pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol SURF4   
Synonyms ERV29
Description surfeit 4
Transcript NM_033161   
Expression
Putative miRNA Targets on SURF4
3'UTR of SURF4
(miRNA target sites are highlighted)
>SURF4|NM_033161|3'UTR
   1 CAGTCACAGATCCCTACCTGCCTGGCTAAGACCCGTGGCCGTCAAGGACTGGTTCGGGGTGGATTCAACAAAACTGCCAG
  81 CTTTTATGTATCCTCTTCCCTTCCCCTCCCTTGGTAAAGGCACAGATGTTTTGAGAACTTTATTTGCAGAGACACCTGAG
 161 AATCGATGGCTCAGTCTGCTCTGGAGCCACAGTCTGGCGTCTGACCCTTCAGTGCAGGCCAGCCTGGCAGCTGGAAGCCT
 241 CCCCCACGCCGAGGCTTTGGAGTGAACAGCCCGCTTGGCTGTGGCATCTCAGTCCTATTTTTGAGTTTTTTTGTGGGGGT
 321 ACAGGAGGGGGCCTTCAAGCTGTACTGTGAGCAGACGCATTGGTATTATCATTCAAAGCAGTCTCCCTCTTATTTGTAAG
 401 TTTACATTTTTAGCGGAAACTACTAAATTATTTTGGGTGGTTCAGCCAAACCTCAAAACAGTTAATCTCCCTGGTTTAAA
 481 ATCACACCAGTGGCTTTGATGTTGTTTCTGCCCCGCATTGTATTTTATAGGAATAGTGAAAACATTTAGGGACACCCAAA
 561 GAATGATGCAGTATTAAAGGGGTGGTAGAAGCTGCTGTTTATGATAAAAGTCATCGGTCAGAAAATCAGCTTGGATTGGT
 641 GCCAAGTGTTTTATTGGGTAACACCCTGGGAGTTTTAGTAGCTTGAGGCAAGGTGGAGGGGCAAGAAGTCCTTGGGGAAG
 721 CTGCTGGTCTGGGTGCTGCTGGCCTCCAAGCTGGCAGTGGGAAGGGCTAGTGAGACCACACAGGGGTAGCCCCAGCAGCA
 801 GCACCCTGCAAGCCAGCCTGGCCAGCTGCTCAGACCAGCTTGCAGAGCCGCAGCCGCTGTGGGCAGGGGGTGTGGCAGGA
 881 GCTCCCAGCACTGGAGACCCACGGACTCAACCCAGTTACCTCACATGGGGCCTTTTCTGAGCAAGGTCTCGAAAGCGCAG
 961 GCCGCCCTGGCTGAGCAGCACCGCCCTTTCCCAGCTGCACTCGCCCTGTGGACAGCCCCGACACACCACTTTCCTGAGGC
1041 TGTCGCTCACTCAGATTGTCCGTTTGCTATGCCGAATGCAGCCAAAATTCCTTTTTACAATTTGTGATGCCTTACCGATT
1121 TGATCTTAATCCTGTATTTAAAGTTTTCTAACACTGCCTTATACTGTGTTTCTCTTTTTGGGGGAGCTTAACTGCTTGTT
1201 GCTCCCTGTCGTCTGCACCATAGTAAATGCCACAAGGGTAGTCGAACACCTCTCTGGCCCCTAGACCTATCTGGGGACAG
1281 GCTGGCTCAGCCTGTCTCCAGGGCTGCTGCGGCCCAGCCCCGAGCCTGCCTCCCTCTTGGCCTCTCATCCATTGGCTCTG
1361 CAGGGCAGGGGTGAGGCAGGTTTCTGCTCATAAGTGCTTTTGGAAGTCACCTACCTTTTTAACACAGCCGAACTAGTCCC
1441 AACGCGTTTGCAAATATTCCCCTGGTAGCCTACTTCCTTACCCCCGAATATTGGTAAGATCGAGCAATGGCTTCAGGACA
1521 TGGGTTCTCTTCTCCTGTGATCATTCAAGTGCTCACTGCATGAAGACTGGCTTGTCTCAGTGTTTCAACCTCACCAGGGC
1601 TGTCTCTTGGTCCACACCTCGCTCCCTGTTAGTGCCGTATGACAGCCCCCATCAAATGACCTTGGCCAAGTCACGGTTTC
1681 TCTGTGGTCAAGGTTGGTTGGCTGATTGGTGGAAAGTAGGGTGGACCAAAGGAGGCCACGTGAGCAGTCAGCACCAGTTC
1761 TGCACCAGCAGCGCCTCCGTCCTAGTGGGTGTTCCTGTTTCTCCTGGCCCTGGGTGGGCTAGGGCCTGATTCGGGAAGAT
1841 GCCTTTGCAGGGAGGGGAGGATAAGTGGGATCTACCAATTGATTCTGGCAAAACAATTTCTAAGATTTTTTTGCTTTATG
1921 TGGGAAACAGATCTAAATCTCATTTTATGCTGTATTTTATATCTTAGTTGTGTTTGAAAACGTTTTGATTTTTGGAAACA
2001 CATCAAAATAAATAATGGCGTTTGTTGTATGCAGTGTGATCCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgACAAUCGGGAUCGGGGCGu 5'
             ||||: ::|| ||||||| 
Target 5' tgaTGTTGTTTCT-GCCCCGCa 3'
497 - 517 162.00 -24.50
2
miRNA  3' acGACAA--UCGGGAUCGGGGCgu 5'
            ||| |  :|||| |||||||  
Target 5' ggCTGCTGCGGCCC-AGCCCCGag 3'
1302 - 1324 145.00 -28.30
3
miRNA  3' acGACAAUCGGGAUCGGGGCgu 5'
            |||||  :|||:||||:|  
Target 5' tcCTGTTTCTCCTGGCCCTGgg 3'
1793 - 1814 140.00 -26.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8066455 14 COSMIC
COSM7210750 18 COSMIC
COSM6793326 19 COSMIC
COSM5950615 24 COSMIC
COSM8296950 25 COSMIC
COSM7273907 31 COSMIC
COSM8064953 34 COSMIC
COSM7975059 37 COSMIC
COSM7601639 55 COSMIC
COSM8946816 56 COSMIC
COSN1084759 103 COSMIC
COSM8456304 117 COSMIC
COSN31521269 162 COSMIC
COSN30510063 180 COSMIC
COSN28872931 305 COSMIC
COSN6381514 356 COSMIC
COSN26133218 514 COSMIC
COSN9278648 610 COSMIC
COSN20106704 648 COSMIC
COSN28045168 790 COSMIC
COSN31544393 885 COSMIC
COSN31541427 1020 COSMIC
COSN20092032 1269 COSMIC
COSN23753839 1298 COSMIC
COSN19353114 1570 COSMIC
COSN5119795 1576 COSMIC
COSN9278647 1721 COSMIC
COSN27259302 1772 COSMIC
COSN19551348 1901 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782478527 1 dbSNP
rs782210729 6 dbSNP
rs782642223 10 dbSNP
rs1262401793 11 dbSNP
rs782515192 12 dbSNP
rs1391342865 14 dbSNP
rs781907267 16 dbSNP
rs1375323264 18 dbSNP
rs368847312 19 dbSNP
rs1474448948 21 dbSNP
rs958317167 23 dbSNP
rs1248578127 24 dbSNP
rs1470497291 26 dbSNP
rs879483480 28 dbSNP
rs374943143 34 dbSNP
rs376036699 35 dbSNP
rs1174503585 39 dbSNP
rs781799566 40 dbSNP
rs372779831 41 dbSNP
rs782732990 44 dbSNP
rs1294805291 45 dbSNP
rs1433317962 48 dbSNP
rs1002662178 53 dbSNP
rs781978950 54 dbSNP
rs782102362 55 dbSNP
rs1403951272 56 dbSNP
rs1343261223 58 dbSNP
rs781922883 60 dbSNP
rs1301616881 62 dbSNP
rs782796947 63 dbSNP
rs782324255 64 dbSNP
rs184769302 65 dbSNP
rs1170330388 66 dbSNP
rs199633690 71 dbSNP
rs1437809514 75 dbSNP
rs782308529 76 dbSNP
rs1302309413 79 dbSNP
rs1191847182 81 dbSNP
rs1345442564 82 dbSNP
rs782228715 83 dbSNP
rs1218573085 86 dbSNP
rs782032849 86 dbSNP
rs965147138 86 dbSNP
rs1184029746 87 dbSNP
rs1261126336 88 dbSNP
rs1184014640 90 dbSNP
rs781949534 95 dbSNP
rs1250600492 96 dbSNP
rs782378336 97 dbSNP
rs782255423 100 dbSNP
rs1278630577 107 dbSNP
rs782412560 109 dbSNP
rs782036261 110 dbSNP
rs782179057 114 dbSNP
rs782579836 118 dbSNP
rs782466300 128 dbSNP
rs782648307 138 dbSNP
rs1394763023 139 dbSNP
rs1298031859 141 dbSNP
rs782749946 142 dbSNP
rs1160769756 151 dbSNP
rs1361415051 153 dbSNP
rs782553074 155 dbSNP
rs1027208762 164 dbSNP
rs995702776 165 dbSNP
rs1048061455 170 dbSNP
rs1441068039 171 dbSNP
rs969385012 172 dbSNP
rs1023588580 180 dbSNP
rs932369231 187 dbSNP
rs782034766 192 dbSNP
rs369134156 198 dbSNP
rs1401263856 199 dbSNP
rs1307372613 203 dbSNP
rs587686020 204 dbSNP
rs1316126002 207 dbSNP
rs921034080 209 dbSNP
rs1014121381 213 dbSNP
rs587621014 239 dbSNP
rs1052924705 241 dbSNP
rs1214352109 242 dbSNP
rs1252472265 243 dbSNP
rs41306722 245 dbSNP
rs1251681739 246 dbSNP
rs914151868 247 dbSNP
rs903005212 248 dbSNP
rs587692883 250 dbSNP
rs947283183 251 dbSNP
rs980811497 253 dbSNP
rs1391670558 254 dbSNP
rs145481023 262 dbSNP
rs1258244763 271 dbSNP
rs1039393815 272 dbSNP
rs943665928 273 dbSNP
rs754893193 277 dbSNP
rs912335765 281 dbSNP
rs982911459 285 dbSNP
rs1291955121 299 dbSNP
rs1314739415 311 dbSNP
rs782694290 314 dbSNP
rs1232613006 317 dbSNP
rs41297219 318 dbSNP
rs1332850082 321 dbSNP
rs1306860905 324 dbSNP
rs782429069 324 dbSNP
rs920076607 331 dbSNP
rs1252155275 336 dbSNP
rs587651608 352 dbSNP
rs959896365 353 dbSNP
rs1015443855 356 dbSNP
rs1260081428 357 dbSNP
rs782179050 359 dbSNP
rs766377170 361 dbSNP
rs1415016508 369 dbSNP
rs1377955665 370 dbSNP
rs1170685090 372 dbSNP
rs1353606746 373 dbSNP
rs969604618 375 dbSNP
rs1314417773 377 dbSNP
rs1023809261 380 dbSNP
rs992190339 383 dbSNP
rs1414085367 385 dbSNP
rs960962089 387 dbSNP
rs782071245 388 dbSNP
rs1216444424 392 dbSNP
rs1031113439 393 dbSNP
rs899559664 395 dbSNP
rs1307087863 397 dbSNP
rs999999549 410 dbSNP
rs371716035 411 dbSNP
rs781928507 414 dbSNP
rs914034217 418 dbSNP
rs11543366 419 dbSNP
rs1186557426 421 dbSNP
rs1400710239 423 dbSNP
rs370657081 438 dbSNP
rs936892373 447 dbSNP
rs782038870 449 dbSNP
rs925587129 451 dbSNP
rs1440655059 452 dbSNP
rs1433919254 464 dbSNP
rs1238409041 472 dbSNP
rs899755409 473 dbSNP
rs981161796 477 dbSNP
rs1346852533 478 dbSNP
rs1192552923 482 dbSNP
rs1431421078 498 dbSNP
rs1487293345 500 dbSNP
rs1248016601 501 dbSNP
rs1270788515 502 dbSNP
rs112514889 504 dbSNP
rs113643863 505 dbSNP
rs200974230 507 dbSNP
rs1316321601 514 dbSNP
rs114749077 515 dbSNP
rs943732755 523 dbSNP
rs992209498 528 dbSNP
rs2494 536 dbSNP
rs1449193474 537 dbSNP
rs1217134574 542 dbSNP
rs202135735 543 dbSNP
rs371842564 543 dbSNP
rs186392195 544 dbSNP
rs1195087910 557 dbSNP
rs929725344 559 dbSNP
rs149744232 562 dbSNP
rs782200451 567 dbSNP
rs1171470353 568 dbSNP
rs948198803 574 dbSNP
rs587757813 577 dbSNP
rs587719147 582 dbSNP
rs78266970 583 dbSNP
rs1420705060 584 dbSNP
rs899540396 591 dbSNP
rs1394916637 594 dbSNP
rs587754501 596 dbSNP
rs1433054570 597 dbSNP
rs1019244712 600 dbSNP
rs1172157403 607 dbSNP
rs1007910308 609 dbSNP
rs1440479716 610 dbSNP
rs1273368327 611 dbSNP
rs1426805097 615 dbSNP
rs41302669 617 dbSNP
rs1224810919 636 dbSNP
rs1284234638 638 dbSNP
rs960761654 642 dbSNP
rs1314579762 645 dbSNP
rs71281255 652 dbSNP
rs892232124 652 dbSNP
rs185237735 653 dbSNP
rs35905067 653 dbSNP
rs1485236776 658 dbSNP
rs587763416 664 dbSNP
rs978232465 678 dbSNP
rs1052541860 679 dbSNP
rs1470424062 687 dbSNP
rs968131979 695 dbSNP
rs181331016 697 dbSNP
rs587670687 698 dbSNP
rs1045355508 701 dbSNP
rs116430927 706 dbSNP
rs899640859 710 dbSNP
rs1440434081 711 dbSNP
rs1321890752 723 dbSNP
rs1018222395 727 dbSNP
rs1443432955 738 dbSNP
rs1008545422 739 dbSNP
rs1279367902 744 dbSNP
rs1349117841 757 dbSNP
rs1279430670 768 dbSNP
rs1273194757 772 dbSNP
rs1333604941 774 dbSNP
rs1211423688 779 dbSNP
rs890836419 781 dbSNP
rs759994156 782 dbSNP
rs907986382 784 dbSNP
rs1476115933 785 dbSNP
rs1302193521 790 dbSNP
rs1188649956 791 dbSNP
rs986590800 803 dbSNP
rs929611027 818 dbSNP
rs898253969 819 dbSNP
rs1418643445 822 dbSNP
rs1038056158 849 dbSNP
rs952613026 850 dbSNP
rs948250631 852 dbSNP
rs1328532737 853 dbSNP
rs112902455 855 dbSNP
rs916716707 856 dbSNP
rs963949408 858 dbSNP
rs1354247586 859 dbSNP
rs587633441 861 dbSNP
rs1242035042 866 dbSNP
rs992461877 868 dbSNP
rs587758357 869 dbSNP
rs1375338170 870 dbSNP
rs1019212190 871 dbSNP
rs1194890292 871 dbSNP
rs939588765 875 dbSNP
rs1272136079 877 dbSNP
rs1486560659 878 dbSNP
rs201309595 880 dbSNP
rs924180097 886 dbSNP
rs1256764942 887 dbSNP
rs782699943 888 dbSNP
rs968018557 890 dbSNP
rs1185447383 891 dbSNP
rs587702406 895 dbSNP
rs1379041875 899 dbSNP
rs915342962 902 dbSNP
rs1427423431 903 dbSNP
rs1369083102 905 dbSNP
rs974813995 920 dbSNP
rs963898909 922 dbSNP
rs28634037 925 dbSNP
rs1008179837 929 dbSNP
rs1319657899 931 dbSNP
rs1326516400 932 dbSNP
rs587745736 938 dbSNP
rs373617682 943 dbSNP
rs1025521054 950 dbSNP
rs1361867396 951 dbSNP
rs147188103 956 dbSNP
rs953784738 957 dbSNP
rs77706944 962 dbSNP
rs1038108683 963 dbSNP
rs1206838668 964 dbSNP
rs587734625 966 dbSNP
rs895349523 967 dbSNP
rs587675712 971 dbSNP
rs1188130730 975 dbSNP
rs192500515 977 dbSNP
rs924205057 980 dbSNP
rs1280217277 982 dbSNP
rs587713993 983 dbSNP
rs776974291 985 dbSNP
rs587640109 986 dbSNP
rs1042635602 988 dbSNP
rs1160858480 994 dbSNP
rs1355410140 996 dbSNP
rs963917922 997 dbSNP
rs1019515317 1002 dbSNP
rs986428088 1003 dbSNP
rs1302343558 1006 dbSNP
rs1310281130 1007 dbSNP
rs782502860 1018 dbSNP
rs1031093213 1019 dbSNP
rs1351464565 1020 dbSNP
rs782008980 1020 dbSNP
rs587602764 1025 dbSNP
rs915230193 1032 dbSNP
rs974866168 1033 dbSNP
rs1194515752 1036 dbSNP
rs1297954583 1044 dbSNP
rs781841671 1045 dbSNP
rs965149354 1048 dbSNP
rs896720859 1049 dbSNP
rs1396050625 1053 dbSNP
rs1461627527 1054 dbSNP
rs1397642725 1056 dbSNP
rs1056772085 1060 dbSNP
rs79976494 1061 dbSNP
rs987042232 1062 dbSNP
rs1335053894 1066 dbSNP
rs1367820006 1067 dbSNP
rs955212455 1069 dbSNP
rs1266251739 1073 dbSNP
rs781913239 1074 dbSNP
rs1425469555 1077 dbSNP
rs1214544486 1085 dbSNP
rs994026522 1090 dbSNP
rs962392613 1091 dbSNP
rs1179281888 1099 dbSNP
rs1251697652 1101 dbSNP
rs1472518270 1102 dbSNP
rs1039495322 1108 dbSNP
rs139684139 1116 dbSNP
rs587770777 1119 dbSNP
rs587713399 1125 dbSNP
rs1260182789 1127 dbSNP
rs1199385180 1134 dbSNP
rs1011830611 1152 dbSNP
rs912472366 1154 dbSNP
rs1347703953 1156 dbSNP
rs1334163681 1157 dbSNP
rs1298464867 1158 dbSNP
rs1395520459 1162 dbSNP
rs1407901956 1163 dbSNP
rs147258944 1165 dbSNP
rs956626539 1166 dbSNP
rs782454351 1170 dbSNP
rs923606595 1170 dbSNP
rs587759266 1174 dbSNP
rs1206909206 1176 dbSNP
rs1306788840 1180 dbSNP
rs902669401 1184 dbSNP
rs1203593340 1185 dbSNP
rs979520643 1185 dbSNP
rs1445003034 1186 dbSNP
rs1475832847 1187 dbSNP
rs781997827 1190 dbSNP
rs1332877193 1205 dbSNP
rs782401909 1208 dbSNP
rs587695452 1210 dbSNP
rs1023829142 1211 dbSNP
rs141898333 1212 dbSNP
rs1375952546 1214 dbSNP
rs1389456948 1216 dbSNP
rs1302281753 1217 dbSNP
rs1377147060 1219 dbSNP
rs946951238 1220 dbSNP
rs1216545915 1228 dbSNP
rs1296612396 1233 dbSNP
rs35337827 1239 dbSNP
rs1341868820 1241 dbSNP
rs1226583234 1245 dbSNP
rs587740256 1252 dbSNP
rs915279523 1256 dbSNP
rs1039061689 1258 dbSNP
rs1160943130 1262 dbSNP
rs1459414993 1266 dbSNP
rs1210043947 1267 dbSNP
rs78072806 1271 dbSNP
rs1186709880 1275 dbSNP
rs1035193219 1279 dbSNP
rs911982922 1282 dbSNP
rs587630481 1285 dbSNP
rs1395475694 1286 dbSNP
rs1413828618 1288 dbSNP
rs987559335 1293 dbSNP
rs1357470908 1297 dbSNP
rs933840433 1298 dbSNP
rs587734562 1301 dbSNP
rs1321324965 1302 dbSNP
rs587771767 1307 dbSNP
rs1451240627 1311 dbSNP
rs1433173335 1314 dbSNP
rs1265445365 1315 dbSNP
rs1211685842 1317 dbSNP
rs1306008318 1317 dbSNP
rs1049048453 1318 dbSNP
rs1331510598 1319 dbSNP
rs1277163672 1320 dbSNP
rs189616967 1321 dbSNP
rs900584808 1322 dbSNP
rs962607699 1328 dbSNP
rs587597421 1332 dbSNP
rs587741496 1334 dbSNP
rs1039129103 1336 dbSNP
rs1260603696 1342 dbSNP
rs1195177774 1344 dbSNP
rs990909518 1347 dbSNP
rs1477598697 1352 dbSNP
rs1189377218 1357 dbSNP
rs1410009011 1362 dbSNP
rs959039873 1365 dbSNP
rs1159916408 1366 dbSNP
rs944801359 1366 dbSNP
rs1035213643 1367 dbSNP
rs587653574 1369 dbSNP
rs587606187 1375 dbSNP
rs1050904023 1376 dbSNP
rs1310430917 1377 dbSNP
rs782257020 1380 dbSNP
rs143682688 1386 dbSNP
rs587691001 1390 dbSNP
rs1376088412 1393 dbSNP
rs1039281524 1395 dbSNP
rs979101502 1416 dbSNP
rs968157190 1423 dbSNP
rs943378315 1426 dbSNP
rs587631689 1429 dbSNP
rs587735762 1430 dbSNP
rs1450708075 1435 dbSNP
rs929398719 1436 dbSNP
rs1219060337 1441 dbSNP
rs919308310 1442 dbSNP
rs587676985 1443 dbSNP
rs1181436808 1444 dbSNP
rs941172016 1445 dbSNP
rs28560158 1446 dbSNP
rs950979644 1448 dbSNP
rs1417646756 1457 dbSNP
rs1028363666 1459 dbSNP
rs994843293 1461 dbSNP
rs1356706266 1462 dbSNP
rs1410971855 1463 dbSNP
rs900468108 1464 dbSNP
rs1477847621 1472 dbSNP
rs1376111203 1476 dbSNP
rs781810127 1479 dbSNP
rs990738563 1481 dbSNP
rs1201128367 1482 dbSNP
rs959323199 1485 dbSNP
rs1438246498 1486 dbSNP
rs1034690870 1487 dbSNP
rs1249584848 1489 dbSNP
rs982305364 1490 dbSNP
rs782669849 1493 dbSNP
rs1215153433 1494 dbSNP
rs1008914703 1501 dbSNP
rs149425301 1502 dbSNP
rs1059773 1504 dbSNP
rs41309956 1507 dbSNP
rs587688006 1514 dbSNP
rs1307834072 1524 dbSNP
rs1272676931 1528 dbSNP
rs1017892663 1529 dbSNP
rs1369206276 1531 dbSNP
rs146867534 1531 dbSNP
rs369816986 1531 dbSNP
rs1334180673 1532 dbSNP
rs782132220 1537 dbSNP
rs782778253 1539 dbSNP
rs1271607178 1542 dbSNP
rs990502022 1543 dbSNP
rs1227326967 1544 dbSNP
rs1007806671 1545 dbSNP
rs1277006955 1546 dbSNP
rs587628713 1548 dbSNP
rs1051779483 1549 dbSNP
rs1362348915 1555 dbSNP
rs927723768 1556 dbSNP
rs587755791 1557 dbSNP
rs1298635619 1562 dbSNP
rs983637932 1565 dbSNP
rs782691141 1566 dbSNP
rs1413655080 1571 dbSNP
rs2240172 1574 dbSNP
rs1450359277 1577 dbSNP
rs1168280477 1581 dbSNP
rs897930216 1588 dbSNP
rs1027830282 1591 dbSNP
rs782367658 1595 dbSNP
rs1400831110 1599 dbSNP
rs965009401 1601 dbSNP
rs1017531496 1610 dbSNP
rs1008880536 1617 dbSNP
rs192053765 1620 dbSNP
rs1373003253 1621 dbSNP
rs1423087468 1622 dbSNP
rs1255392672 1626 dbSNP
rs1342813403 1627 dbSNP
rs1198764245 1628 dbSNP
rs587720982 1628 dbSNP
rs1465466361 1634 dbSNP
rs1188229254 1635 dbSNP
rs909702600 1636 dbSNP
rs11101 1637 dbSNP
rs782420483 1640 dbSNP
rs1465009098 1643 dbSNP
rs371167333 1649 dbSNP
rs1388809705 1658 dbSNP
rs782107085 1666 dbSNP
rs587616890 1669 dbSNP
rs747818264 1674 dbSNP
rs913667296 1675 dbSNP
rs989216977 1676 dbSNP
rs1323803336 1680 dbSNP
rs927692660 1680 dbSNP
rs958230528 1696 dbSNP
rs1017762700 1697 dbSNP
rs41306724 1704 dbSNP
rs782336618 1707 dbSNP
rs973611766 1708 dbSNP
rs587688780 1709 dbSNP
rs1210766334 1711 dbSNP
rs1278723246 1712 dbSNP
rs1447026761 1715 dbSNP
rs782306007 1733 dbSNP
rs754693940 1739 dbSNP
rs1472008793 1744 dbSNP
rs1037772514 1755 dbSNP
rs2107368 1760 dbSNP
rs1415295516 1761 dbSNP
rs141335545 1763 dbSNP
rs782586507 1765 dbSNP
rs1467212214 1766 dbSNP
rs1292674402 1772 dbSNP
rs1031638967 1774 dbSNP
rs1181729414 1778 dbSNP
rs888315787 1779 dbSNP
rs782408646 1781 dbSNP
rs1054976986 1786 dbSNP
rs1323658363 1787 dbSNP
rs968848058 1789 dbSNP
rs1265225526 1794 dbSNP
rs1472089158 1799 dbSNP
rs1207898606 1801 dbSNP
rs1239649412 1802 dbSNP
rs937804170 1804 dbSNP
rs587733671 1805 dbSNP
rs1010765008 1807 dbSNP
rs1415352369 1828 dbSNP
rs587699217 1830 dbSNP
rs1163717183 1832 dbSNP
rs587600967 1833 dbSNP
rs1064704 1838 dbSNP
rs1431450804 1839 dbSNP
rs1003471746 1841 dbSNP
rs906159271 1842 dbSNP
rs782298077 1845 dbSNP
rs989262590 1846 dbSNP
rs1306193504 1854 dbSNP
rs1381523609 1860 dbSNP
rs1273075485 1861 dbSNP
rs1312343864 1867 dbSNP
rs1320169007 1870 dbSNP
rs957781194 1873 dbSNP
rs929020171 1878 dbSNP
rs587717932 1879 dbSNP
rs1227734049 1880 dbSNP
rs910253844 1881 dbSNP
rs1238695382 1890 dbSNP
rs1483313278 1891 dbSNP
rs117381245 1896 dbSNP
rs1253582879 1903 dbSNP
rs1339199961 1904 dbSNP
rs138420913 1905 dbSNP
rs1389332594 1909 dbSNP
rs1427726326 1910 dbSNP
rs1178196541 1912 dbSNP
rs1360946269 1913 dbSNP
rs1466576261 1913 dbSNP
rs188444259 1920 dbSNP
rs1377166952 1922 dbSNP
rs1437566525 1927 dbSNP
rs1376476803 1928 dbSNP
rs1329479309 1931 dbSNP
rs1365011484 1932 dbSNP
rs1449106286 1937 dbSNP
rs993691655 1950 dbSNP
rs1164167042 1954 dbSNP
rs910795672 1955 dbSNP
rs1253741088 1957 dbSNP
rs962060438 1959 dbSNP
rs954959029 1963 dbSNP
rs587650921 1968 dbSNP
rs1016212209 1970 dbSNP
rs924581129 1970 dbSNP
rs1164224842 1981 dbSNP
rs1439432289 1985 dbSNP
rs977461202 1989 dbSNP
rs587755484 1990 dbSNP
rs969194068 1999 dbSNP
rs1006145519 2001 dbSNP
rs1010737629 2003 dbSNP
rs1176339551 2003 dbSNP
rs959159140 2009 dbSNP
rs1033514992 2010 dbSNP
rs1458808829 2014 dbSNP
rs782641219 2019 dbSNP
rs906464203 2020 dbSNP
rs587694135 2024 dbSNP
rs1368831468 2027 dbSNP
rs1220154072 2030 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 3'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.658 8.1e-4 -0.674 5.6e-4 20 Click to see details
GSE21687 Ependynoma primary tumors -0.28 1.3e-2 -0.293 9.4e-3 64 Click to see details
GSE21032 Prostate cancer 0.209 2.9e-2 0.266 7.5e-3 83 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.35 4.3e-2 0.398 2.4e-2 25 Click to see details
GSE19783 ER+ ER+ breast cancer 0.384 4.7e-2 0.263 1.3e-1 20 Click to see details
GSE38226 Liver fibrosis 0.36 5.4e-2 0.496 1.1e-2 21 Click to see details
GSE42095 Differentiated embryonic stem cells 0.263 1.1e-1 0.278 1.0e-1 23 Click to see details
GSE19783 ER- ER- breast cancer -0.137 1.1e-1 -0.107 1.7e-1 79 Click to see details
GSE19350 CNS germ cell tumors -0.356 1.3e-1 -0.329 1.5e-1 12 Click to see details
GSE28260 Renal cortex and medulla -0.329 1.4e-1 -0.324 1.4e-1 13 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.154 2.3e-1 0.335 5.1e-2 25 Click to see details
GSE26953 Aortic valvular endothelial cells 0.149 2.4e-1 0.034 4.4e-1 24 Click to see details
GSE19536 Breast cancer -0.043 3.4e-1 -0.017 4.3e-1 100 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.153 3.5e-1 -0.400 1.4e-1 9 Click to see details
GSE32688 Pancreatic cancer 0.066 3.6e-1 0.137 2.3e-1 32 Click to see details
GSE28544 Breast cancer -0.062 3.9e-1 0.020 4.6e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KICH -0.308 0.07 -0.330 0.05 25 Click to see details
LIHC 0.167 0.13 0.221 0.06 49 Click to see details
STAD 0.2 0.14 0.232 0.1 32 Click to see details
LUSC 0.175 0.15 0.075 0.33 38 Click to see details
THCA -0.139 0.15 -0.159 0.11 59 Click to see details
CESC 0.864 0.17 1.000 0.5 3 Click to see details
COAD -0.382 0.18 -0.119 0.39 8 Click to see details
BRCA -0.094 0.2 -0.082 0.23 84 Click to see details
BLCA 0.17 0.25 0.226 0.18 18 Click to see details
PRAD 0.095 0.26 0.087 0.27 50 Click to see details
KIRC -0.069 0.29 -0.085 0.25 68 Click to see details
PAAD -0.386 0.31 0.000 0.5 4 Click to see details
HNSC -0.078 0.31 -0.077 0.31 42 Click to see details
ESCA -0.137 0.34 -0.127 0.35 11 Click to see details
KIRP 0.031 0.43 0.026 0.44 32 Click to see details
LUAD -0.049 0.44 0.210 0.26 12 Click to see details
UCEC 0.036 0.44 -0.139 0.29 19 Click to see details
CHOL -0.025 0.47 -0.217 0.29 9 Click to see details
PCPG 0.064 0.48 0.500 0.33 3 Click to see details
PCPG 0.064 0.48 0.500 0.33 3 Click to see details
PCPG 0.064 0.48 0.500 0.33 3 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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