miRTarBase - #MIRT038013


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pre-miRNA Information
pre-miRNA hsa-mir-423   
Genomic Coordinates chr17: 30117079 - 30117172
Synonyms MIRN423, hsa-mir-423, MIR423
Description Homo sapiens miR-423 stem-loop
Comment miR-423 (renamed miR-423-3p here) is expressed in human promyelocytic leukemia (HL-60) cells .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-423-5p
Sequence 17| UGAGGGGCAGAGAGCGAGACUUU |39
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31534005 8 COSMIC
COSN31546484 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1237323143 1 dbSNP
rs766187585 6 dbSNP
rs901641664 10 dbSNP
rs776372668 14 dbSNP
rs1410439654 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BW9LU5 miR-423 Safety Biomarker (SAF) Clinical/Experimental Data Expression Higher Urine Quantitative polymerase chain reaction
BW9LU5 miR-423 Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Serum exosomes SRNA-sequencing
Gene Information
Gene Symbol YWHAZ   
Synonyms 14-3-3-zeta, HEL-S-3, HEL-S-93, HEL4, KCIP-1, YWHAD
Description tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta
Transcript NM_001135699   
Other Transcripts NM_001135700 , NM_001135701 , NM_001135702 , NM_003406 , NM_145690   
Expression
Putative miRNA Targets on YWHAZ
3'UTR of YWHAZ
(miRNA target sites are highlighted)		 
>YWHAZ|NM_001135699|3'UTR
   1 CCGGCCTTCCAACTTTTGTCTGCCTCATTCTAAAATTTACACAGTAGACCATTTGTCATCCATGCTGTCCCACAAATAGT
  81 TTTTTGTTTACGATTTATGACAGGTTTATGTTACTTCTATTTGAATTTCTATATTTCCCATGTGGTTTTTATGTTTAATA
 161 TTAGGGGAGTAGAGCCAGTTAACATTTAGGGAGTTATCTGTTTTCATCTTGAGGTGGCCAATATGGGGATGTGGAATTTT
 241 TATACAAGTTATAAGTGTTTGGCATAGTACTTTTGGTACATTGTGGCTTCAAAAGGGCCAGTGTAAAACTGCTTCCATGT
 321 CTAAGCAAAGAAAACTGCCTACATACTGGTTTGTCCTGGCGGGGAATAAAAGGGATCATTGGTTCCAGTCACAGGTGTAG
 401 TAATTGTGGGTACTTTAAGGTTTGGAGCACTTACAAGGCTGTGGTAGAATCATACCCCATGGATACCACATATTAAACCA
 481 TGTATATCTGTGGAATACTCAATGTGTACACCTTTGACTACAGCTGCAGAAGTGTTCCTTTAGACAAAGTTGTGACCCAT
 561 TTTACTCTGGATAAGGGCAGAAACGGTTCACATTCCATTATTTGTAAAGTTACCTGCTGTTAGCTTTCATTATTTTTGCT
 641 ACACTCATTTTATTTGTATTTAAATGTTTTAGGCAACCTAAGAACAAATGTAAAAGTAAAGATGCAGGAAAAATGAATTG
 721 CTTGGTATTCATTACTTCATGTATATCAAGCACAGCAGTAAAACAAAAACCCATGTATTTAACTTTTTTTTAGGATTTTT
 801 GCTTTTGTGATTTTTTTTTTTTTGATACTTGCCTAACATGCATGTGCTGTAAAAATAGTTAACAGGGAAATAACTTGAGA
 881 TGATGGCTAGCTTTGTTTAATGTCTTATGAAATTTTCATGAACAATCCAAGCATAATTGTTAAGAACACGTGTATTAAAT
 961 TCATGTAAGTGGAATAAAAGTTTTATGAATGGACTTTTCAACTACTTTCTCTACAGCTTTTCATGTAAATTAGTCTTGGT
1041 TCTGAAACTTCTCTAAAGGAAATTGTACATTTTTTGAAATTTATTCCTTATTCCCTCTTGGCAGCTAATGGGCTCTTACC
1121 AAGTTTAAACACAAAATTTATCATAACAAAAATACTACTAATATAACTACTGTTTCCATGTCCCATGATCCCCTCTCTTC
1201 CTCCCCACCCTGAAAAAAATGAGTTCCTATTTTTTCTGGGAGAGGGGGGGATTGATTAGAAAAAAATGTAGTGTGTTCCA
1281 TTTAAAATTTTGGCATATGGCATTTTCTAACTTAGGAAGCCACAATGTTCTTGGCCCATCATGACATTGGGTAGCATTAA
1361 CTGTAAGTTTTGTGCTTCCAAATCACTTTTTGGTTTTTAAGAATTTCTTGATACTCTTATAGCCTGCCTTCAATTTTGAT
1441 CCTTTATTCTTTCTATTTGTCAGGTGCACAAGATTACCTTCCTGTTTTAGCCTTCTGTCTTGTCACCAACCATTCTTACT
1521 TGGTGGCCATGTACTTGGAAAAAGGCCGCATGATCTTTCTGGCTCCACTCAGTGTCTAAGGCACCCTGCTTCCTTTGCTT
1601 GCATCCCACAGACTATTTCCCTCATCCTATTTACTGCAGCAAATCTCTCCTTAGTTGATGAGACTGTGTTTATCTCCCTT
1681 TAAAACCCTACCTATCCTGAATGGTCTGTCATTGTCTGCCTTTAAAATCCTTCCTCTTTCTTCCTCCTCTATTCTCTAAA
1761 TAATGATGGGGCTAAGTTATACCCAAAGCTCACTTTACAAAATATTTCCTCAGTACTTTGCAGAAAACACCAAACAAAAA
1841 TGCCATTTTAAAAAAGGTGTATTTTTTCTTTTAGAATGTAAGCTCCTCAAGAGCAGGGACAATGTTTTCTGTATGTTCTA
1921 TTGTGCCTAGTACACTGTAAATGCTCAATAAATATTGATGATGGGAGGCAGTGAGTCTTGATGATAAGGGTGAGAAACTG
2001 AAATCCCAAACACTGTTTTGTTGCTTGTTTTATTATGACCTCAGATTAAATTGGGAAATATTGGCCCTTTTGAATAATTG
2081 TCCCAAATATTACATTCAAATAAAAGTGCAATGGAGAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuUCAGAG---CGAGAGACGGGGAGu 5'
            || | |   |:|||: |||| || 
Target 5' gaAGCCACAATGTTCTTGGCCCATCa 3'
 1316 - 1341 129.00 -16.70
2 
miRNA  3' uuUCAGAGCGAGAG------A--CGGGGAGu 5'
            | |:|: ||:|:      |  ||:|||| 
Target 5' gtATTTTTTCTTTTAGAATGTAAGCTCCTCa 3'
 1859 - 1889 129.00 -14.00
3 
miRNA  3' uuucagagcgagagacGGGGAGu 5'
                          |||||| 
Target 5' ttccatgtcccatgatCCCCTCt 3'
 1174 - 1196 120.00 -12.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30468458 10 COSMIC
COSN31601405 10 COSMIC
COSN26670221 12 COSMIC
COSN30525436 49 COSMIC
COSN30146438 60 COSMIC
COSN30450811 71 COSMIC
COSN26582077 92 COSMIC
COSN31540443 98 COSMIC
COSN26581834 105 COSMIC
COSN31547898 129 COSMIC
COSN30510760 136 COSMIC
COSN30040545 197 COSMIC
COSN21457005 208 COSMIC
COSN26561824 245 COSMIC
COSN26667553 255 COSMIC
COSN28775092 329 COSMIC
COSN30541067 342 COSMIC
COSN6901563 400 COSMIC
COSN31522381 410 COSMIC
COSN26666389 584 COSMIC
COSN28690079 641 COSMIC
COSN31568762 652 COSMIC
COSN31523986 769 COSMIC
COSN25948069 783 COSMIC
COSN30161468 908 COSMIC
COSN31490973 909 COSMIC
COSN31585474 914 COSMIC
COSN26585839 917 COSMIC
COSN31545926 919 COSMIC
COSN26581097 923 COSMIC
COSN21409619 1122 COSMIC
COSN30543585 1282 COSMIC
COSN8050938 1319 COSMIC
COSN28740909 1455 COSMIC
COSN30175544 1740 COSMIC
COSN30175543 1756 COSMIC
COSN30170722 1946 COSMIC
COSN4936315 1989 COSMIC
COSN8050937 2154 COSMIC
COSN27575925 2248 COSMIC
COSN31855054 2249 COSMIC
COSN27616205 2334 COSMIC
COSN9519532 2523 COSMIC
COSN19282438 2575 COSMIC
COSN6901562 2613 COSMIC
COSN24174021 2615 COSMIC
COSN22293856 2827 COSMIC
COSN27349458 2936 COSMIC
COSN22820052 3268 COSMIC
COSN5230151 3532 COSMIC
COSN27914160 3821 COSMIC
COSN25346742 3856 COSMIC
COSN20234160 4083 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs202185783 2 dbSNP
rs201849882 3 dbSNP
rs780150324 5 dbSNP
rs1272264854 6 dbSNP
rs758535439 9 dbSNP
rs1361414520 13 dbSNP
rs201110733 14 dbSNP
rs1272160449 16 dbSNP
rs560476770 21 dbSNP
rs1380063726 26 dbSNP
rs757472369 27 dbSNP
rs541647261 29 dbSNP
rs764328564 30 dbSNP
rs1327508868 38 dbSNP
rs1427029118 44 dbSNP
rs1371732940 51 dbSNP
rs775599297 51 dbSNP
rs1479100856 55 dbSNP
rs1173389880 79 dbSNP
rs752047964 79 dbSNP
rs11551354 86 dbSNP
rs1433014754 89 dbSNP
rs1171670101 91 dbSNP
rs1362433313 92 dbSNP
rs184148359 103 dbSNP
rs1317329463 104 dbSNP
rs752066360 109 dbSNP
rs1438098180 113 dbSNP
rs1303702127 114 dbSNP
rs1231499396 117 dbSNP
rs1406964795 117 dbSNP
rs925564740 119 dbSNP
rs562545470 131 dbSNP
rs1479586278 139 dbSNP
rs1428257897 140 dbSNP
rs975570220 141 dbSNP
rs1453689194 144 dbSNP
rs1430223290 151 dbSNP
rs1252673354 172 dbSNP
rs1452635674 174 dbSNP
rs1160576516 181 dbSNP
rs1381036469 188 dbSNP
rs942873639 188 dbSNP
rs1157945928 193 dbSNP
rs1406932544 197 dbSNP
rs376209416 197 dbSNP
rs1326137020 199 dbSNP
rs1204001238 200 dbSNP
rs1369835868 200 dbSNP
rs1461342063 205 dbSNP
rs766850750 208 dbSNP
rs1310750216 216 dbSNP
rs1335845638 218 dbSNP
rs1259551650 219 dbSNP
rs763268892 219 dbSNP
rs1201318026 221 dbSNP
rs1358895042 225 dbSNP
rs1214764138 229 dbSNP
rs1272750017 233 dbSNP
rs1322478031 239 dbSNP
rs145502947 242 dbSNP
rs1255760297 245 dbSNP
rs191185043 251 dbSNP
rs1180998214 260 dbSNP
rs1213647829 268 dbSNP
rs1362039048 270 dbSNP
rs1476045522 273 dbSNP
rs987264316 274 dbSNP
rs1393479401 280 dbSNP
rs1459494166 281 dbSNP
rs951506256 292 dbSNP
rs1396583978 296 dbSNP
rs1390373533 300 dbSNP
rs1305466220 310 dbSNP
rs558113602 312 dbSNP
rs1342825942 323 dbSNP
rs1050754251 326 dbSNP
rs1026030039 340 dbSNP
rs1293012714 341 dbSNP
rs1333169058 346 dbSNP
rs1200689439 348 dbSNP
rs1480343525 356 dbSNP
rs11551357 358 dbSNP
rs974142115 360 dbSNP
rs1382179782 361 dbSNP
rs1188585014 362 dbSNP
rs533571943 382 dbSNP
rs963260293 385 dbSNP
rs1383542515 394 dbSNP
rs186767787 395 dbSNP
rs1001976453 396 dbSNP
rs1461018048 409 dbSNP
rs1468425772 412 dbSNP
rs905011609 416 dbSNP
rs770025913 417 dbSNP
rs556367600 433 dbSNP
rs1480546471 434 dbSNP
rs1353953326 436 dbSNP
rs1220914999 439 dbSNP
rs1296522420 441 dbSNP
rs1307093517 458 dbSNP
rs1225543243 459 dbSNP
rs1486042134 462 dbSNP
rs11545396 467 dbSNP
rs1211502371 472 dbSNP
rs1024822898 480 dbSNP
rs1013718767 484 dbSNP
rs1256789460 484 dbSNP
rs1262210492 491 dbSNP
rs892218155 492 dbSNP
rs1052528357 493 dbSNP
rs1396294251 502 dbSNP
rs1434876386 503 dbSNP
rs1173550525 514 dbSNP
rs1192314893 517 dbSNP
rs1270830759 519 dbSNP
rs554084123 524 dbSNP
rs904090601 526 dbSNP
rs1040002020 529 dbSNP
rs942948451 541 dbSNP
rs1303763095 545 dbSNP
rs912692387 550 dbSNP
rs986992388 557 dbSNP
rs1250849092 558 dbSNP
rs879002446 561 dbSNP
rs140806054 564 dbSNP
rs1341850498 565 dbSNP
rs565389081 566 dbSNP
rs1249988678 568 dbSNP
rs918715841 575 dbSNP
rs1485426128 583 dbSNP
rs1184404634 584 dbSNP
rs974469560 584 dbSNP
rs962709599 585 dbSNP
rs551539483 587 dbSNP
rs1360876469 592 dbSNP
rs1317234676 594 dbSNP
rs1160470879 614 dbSNP
rs980628006 616 dbSNP
rs1452157222 618 dbSNP
rs1372051110 625 dbSNP
rs969286537 631 dbSNP
rs1025190009 632 dbSNP
rs1375637116 642 dbSNP
rs1013459575 645 dbSNP
rs1284957983 652 dbSNP
rs1316109861 653 dbSNP
rs570522311 656 dbSNP
rs758882848 663 dbSNP
rs1000514429 666 dbSNP
rs1212693606 674 dbSNP
rs1425211235 680 dbSNP
rs1387068397 681 dbSNP
rs903495322 700 dbSNP
rs1161100256 701 dbSNP
rs1443438359 708 dbSNP
rs1417670269 710 dbSNP
rs1039398730 713 dbSNP
rs531619161 725 dbSNP
rs891378705 726 dbSNP
rs1183464514 727 dbSNP
rs4003432 734 dbSNP
rs1324140929 735 dbSNP
rs1356354116 738 dbSNP
rs535786363 739 dbSNP
rs1051695009 740 dbSNP
rs930190713 741 dbSNP
rs568595016 744 dbSNP
rs1490649428 774 dbSNP
rs1226517895 783 dbSNP
rs1294834137 786 dbSNP
rs918650233 789 dbSNP
rs1038396886 792 dbSNP
rs1212672293 792 dbSNP
rs941462794 792 dbSNP
rs3921614 795 dbSNP
rs1244457744 800 dbSNP
rs1355665512 801 dbSNP
rs1280220449 803 dbSNP
rs1241451428 807 dbSNP
rs1479917794 808 dbSNP
rs868532393 809 dbSNP
rs770981479 810 dbSNP
rs866800209 810 dbSNP
rs58344290 811 dbSNP
rs1307160002 812 dbSNP
rs1190716650 813 dbSNP
rs1405377695 813 dbSNP
rs927263604 823 dbSNP
rs1417171338 824 dbSNP
rs142007434 824 dbSNP
rs369444018 824 dbSNP
rs866388383 824 dbSNP
rs869207861 824 dbSNP
rs1438097926 825 dbSNP
rs1367249394 827 dbSNP
rs1301166178 828 dbSNP
rs1423949563 831 dbSNP
rs1407992132 832 dbSNP
rs1159862346 835 dbSNP
rs1258903048 841 dbSNP
rs1485538366 844 dbSNP
rs1186308114 846 dbSNP
rs1244229241 857 dbSNP
rs1475829808 861 dbSNP
rs4085567 865 dbSNP
rs1167557496 866 dbSNP
rs1417453905 867 dbSNP
rs183659599 874 dbSNP
rs969709394 877 dbSNP
rs1298694232 882 dbSNP
rs1414124941 889 dbSNP
rs1362909318 890 dbSNP
rs1327994910 904 dbSNP
rs1269301049 908 dbSNP
rs917874228 908 dbSNP
rs1362386502 909 dbSNP
rs1827729 914 dbSNP
rs193223230 919 dbSNP
rs1281633967 923 dbSNP
rs956590334 924 dbSNP
rs1199269049 925 dbSNP
rs866960160 928 dbSNP
rs1271517435 933 dbSNP
rs1192725630 947 dbSNP
rs570983777 949 dbSNP
rs1000586295 950 dbSNP
rs1194295532 959 dbSNP
rs1285033938 962 dbSNP
rs1207025675 980 dbSNP
rs1433963781 984 dbSNP
rs1170747242 989 dbSNP
rs1017912493 997 dbSNP
rs1317171550 1000 dbSNP
rs1006598851 1001 dbSNP
rs1442694328 1009 dbSNP
rs552599903 1011 dbSNP
rs891361020 1013 dbSNP
rs1287922832 1015 dbSNP
rs1224379809 1017 dbSNP
rs1051375483 1030 dbSNP
rs1347098225 1038 dbSNP
rs749554133 1038 dbSNP
rs1281146206 1045 dbSNP
rs1435668683 1060 dbSNP
rs188798657 1060 dbSNP
rs1345774466 1061 dbSNP
rs1319690178 1070 dbSNP
rs1266658947 1080 dbSNP
rs1398489242 1080 dbSNP
rs1469951469 1091 dbSNP
rs1214568268 1093 dbSNP
rs1431580474 1109 dbSNP
rs1196653968 1124 dbSNP
rs1365516201 1131 dbSNP
rs183506990 1132 dbSNP
rs1157742733 1135 dbSNP
rs897295590 1140 dbSNP
rs1038511510 1148 dbSNP
rs1326244266 1150 dbSNP
rs941409449 1158 dbSNP
rs1384618714 1161 dbSNP
rs140382471 1163 dbSNP
rs1197790943 1174 dbSNP
rs1477978177 1177 dbSNP
rs1243242624 1185 dbSNP
rs1044368704 1191 dbSNP
rs548418297 1198 dbSNP
rs1445306432 1199 dbSNP
rs950107878 1206 dbSNP
rs917807812 1207 dbSNP
rs992064921 1219 dbSNP
rs1272852180 1220 dbSNP
rs1487534682 1220 dbSNP
rs1261007346 1224 dbSNP
rs1197673711 1226 dbSNP
rs754929245 1229 dbSNP
rs770949836 1236 dbSNP
rs1181387423 1237 dbSNP
rs1476096142 1244 dbSNP
rs923733216 1244 dbSNP
rs191755037 1245 dbSNP
rs552290985 1245 dbSNP
rs562576549 1246 dbSNP
rs1363748290 1248 dbSNP
rs1336820579 1251 dbSNP
rs1396610237 1257 dbSNP
rs1018067657 1258 dbSNP
rs1470746265 1262 dbSNP
rs1391254274 1265 dbSNP
rs1306793228 1267 dbSNP
rs985513748 1267 dbSNP
rs1174362589 1268 dbSNP
rs1415836556 1269 dbSNP
rs1320102636 1270 dbSNP
rs749382387 1272 dbSNP
rs1420699521 1282 dbSNP
rs1338835044 1283 dbSNP
rs1204328586 1286 dbSNP
rs542590378 1300 dbSNP
rs1255241347 1315 dbSNP
rs1474716258 1315 dbSNP
rs779319598 1319 dbSNP
rs56284211 1320 dbSNP
rs1184351514 1325 dbSNP
rs1172096479 1333 dbSNP
rs1373149923 1334 dbSNP
rs1428613940 1336 dbSNP
rs1167240688 1337 dbSNP
rs1377842024 1338 dbSNP
rs1462807245 1341 dbSNP
rs1241574857 1347 dbSNP
rs115295165 1361 dbSNP
rs1377455161 1365 dbSNP
rs1384075261 1369 dbSNP
rs1307808061 1371 dbSNP
rs1325904749 1379 dbSNP
rs1226322322 1383 dbSNP
rs187173723 1384 dbSNP
rs1211522296 1388 dbSNP
rs1212663101 1391 dbSNP
rs1393083530 1402 dbSNP
rs1482191772 1403 dbSNP
rs1187891831 1415 dbSNP
rs1262053417 1416 dbSNP
rs1341448521 1417 dbSNP
rs752347610 1418 dbSNP
rs1315114110 1419 dbSNP
rs1454159312 1420 dbSNP
rs1396388634 1422 dbSNP
rs1379984302 1432 dbSNP
rs756248525 1433 dbSNP
rs1017056646 1441 dbSNP
rs1355414637 1453 dbSNP
rs1005710212 1455 dbSNP
rs577607650 1455 dbSNP
rs1433193858 1463 dbSNP
rs1305643323 1464 dbSNP
rs1371821875 1466 dbSNP
rs1428368572 1470 dbSNP
rs1234924671 1475 dbSNP
rs1300577583 1478 dbSNP
rs1310196822 1481 dbSNP
rs1217728463 1486 dbSNP
rs11551356 1487 dbSNP
rs1164259044 1488 dbSNP
rs950197339 1489 dbSNP
rs564686645 1490 dbSNP
rs116414929 1494 dbSNP
rs1423728472 1502 dbSNP
rs751076085 1503 dbSNP
rs765881259 1504 dbSNP
rs1411745299 1509 dbSNP
rs1181440063 1513 dbSNP
rs1481082379 1519 dbSNP
rs762866086 1520 dbSNP
rs540828852 1526 dbSNP
rs572466390 1527 dbSNP
rs1202247653 1528 dbSNP
rs923891846 1531 dbSNP
rs1288689604 1537 dbSNP
rs1328234239 1544 dbSNP
rs1281729066 1547 dbSNP
rs979249623 1548 dbSNP
rs554273550 1550 dbSNP
rs946557747 1556 dbSNP
rs1220130976 1559 dbSNP
rs1244496559 1576 dbSNP
rs911077888 1583 dbSNP
rs1356571602 1584 dbSNP
rs1178283915 1586 dbSNP
rs1311397122 1599 dbSNP
rs1471848181 1619 dbSNP
rs1167344047 1621 dbSNP
rs1418900824 1626 dbSNP
rs146766382 1629 dbSNP
rs1162713495 1630 dbSNP
rs1356370282 1644 dbSNP
rs1375149158 1647 dbSNP
rs1234708345 1649 dbSNP
rs955310373 1653 dbSNP
rs1308636712 1662 dbSNP
rs4003437 1664 dbSNP
rs1300240514 1668 dbSNP
rs1408428758 1669 dbSNP
rs1370366192 1670 dbSNP
rs575049075 1672 dbSNP
rs1294934058 1674 dbSNP
rs1356545875 1676 dbSNP
rs765135393 1688 dbSNP
rs113114570 1689 dbSNP
rs1227395935 1696 dbSNP
rs1287044488 1696 dbSNP
rs556703474 1698 dbSNP
rs1029292355 1703 dbSNP
rs1427123493 1708 dbSNP
rs761634525 1710 dbSNP
rs1482265647 1712 dbSNP
rs1190452157 1714 dbSNP
rs1258691964 1715 dbSNP
rs1472551957 1718 dbSNP
rs1180347757 1729 dbSNP
rs972850772 1734 dbSNP
rs1410666942 1739 dbSNP
rs1164247156 1740 dbSNP
rs961600671 1740 dbSNP
rs538485217 1741 dbSNP
rs3956010 1744 dbSNP
rs1419878413 1750 dbSNP
rs1314414826 1751 dbSNP
rs182781718 1761 dbSNP
rs1017170650 1762 dbSNP
rs1446820781 1764 dbSNP
rs189790503 1764 dbSNP
rs906015816 1765 dbSNP
rs1023102210 1766 dbSNP
rs1273314135 1768 dbSNP
rs1062376 1772 dbSNP
rs1340607412 1773 dbSNP
rs1014304521 1779 dbSNP
rs1279708888 1780 dbSNP
rs1442262217 1780 dbSNP
rs895888747 1782 dbSNP
rs1472115754 1785 dbSNP
rs1475879835 1786 dbSNP
rs751321717 1790 dbSNP
rs1187964106 1791 dbSNP
rs1062382 1792 dbSNP
rs1388408225 1793 dbSNP
rs534287930 1796 dbSNP
rs4106220 1802 dbSNP
rs1269354523 1805 dbSNP
rs566842756 1805 dbSNP
rs548307222 1806 dbSNP
rs529984551 1807 dbSNP
rs562666808 1808 dbSNP
rs527327647 1810 dbSNP
rs1224545431 1811 dbSNP
rs1384923888 1816 dbSNP
rs1402639000 1819 dbSNP
rs1413740918 1822 dbSNP
rs1331766013 1825 dbSNP
rs1053121731 1830 dbSNP
rs999294449 1831 dbSNP
rs1264336812 1840 dbSNP
rs1296142370 1845 dbSNP
rs1362416023 1849 dbSNP
rs1237121473 1850 dbSNP
rs1276027837 1851 dbSNP
rs1178310468 1854 dbSNP
rs1215948470 1859 dbSNP
rs1344710907 1861 dbSNP
rs902414476 1862 dbSNP
rs1043643191 1868 dbSNP
rs1286823225 1868 dbSNP
rs1318315423 1869 dbSNP
rs1304363582 1889 dbSNP
rs1246252508 1890 dbSNP
rs1200876372 1891 dbSNP
rs946631402 1891 dbSNP
rs1292076117 1896 dbSNP
rs911025654 1901 dbSNP
rs578074629 1902 dbSNP
rs933753905 1903 dbSNP
rs1457388878 1907 dbSNP
rs1319541262 1909 dbSNP
rs922380114 1911 dbSNP
rs1139382 1918 dbSNP
rs1442511616 1918 dbSNP
rs1324752980 1919 dbSNP
rs550749527 1920 dbSNP
rs961051479 1923 dbSNP
rs1281581054 1927 dbSNP
rs1062393 1934 dbSNP
rs1292986390 1948 dbSNP
rs1228013134 1951 dbSNP
rs1266518107 1954 dbSNP
rs909568698 1955 dbSNP
rs1347065395 1959 dbSNP
rs1157146831 1967 dbSNP
rs1456920516 1986 dbSNP
rs1450894767 1989 dbSNP
rs1231442362 1998 dbSNP
rs150080587 2007 dbSNP
rs1201392131 2009 dbSNP
rs3203463 2012 dbSNP
rs1157914267 2015 dbSNP
rs970291867 2017 dbSNP
rs557854107 2031 dbSNP
rs1163269566 2038 dbSNP
rs1389410111 2039 dbSNP
rs1385584495 2042 dbSNP
rs539896641 2043 dbSNP
rs1486533150 2046 dbSNP
rs1265710516 2050 dbSNP
rs1409654832 2051 dbSNP
rs1207634505 2057 dbSNP
rs1286872936 2072 dbSNP
rs960141570 2074 dbSNP
rs1264126029 2078 dbSNP
rs1225784748 2082 dbSNP
rs1354404885 2090 dbSNP
rs528197675 2093 dbSNP
rs1207982530 2100 dbSNP
rs1032200295 2106 dbSNP
rs560906332 2111 dbSNP
rs1383285904 2119 dbSNP
rs998960418 2119 dbSNP
rs1425130814 2144 dbSNP
rs542294618 2149 dbSNP
rs904497044 2157 dbSNP
rs768712475 2160 dbSNP
rs1455970526 2169 dbSNP
rs1051885762 2171 dbSNP
rs1043090241 2172 dbSNP
rs1429708361 2179 dbSNP
rs35693484 2179 dbSNP
rs1306487159 2180 dbSNP
rs1434631512 2183 dbSNP
rs933373743 2184 dbSNP
rs1312361722 2186 dbSNP
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Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 5'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuucagagcgagagacGGGGAGu 5'
                          |||| | 
Target 5' ------------cctcCCCCACc 3'
 		1 - 11
2 
miRNA  3' uuucagagcgagagaCGGggagu 5'
                         |||     
Target 5' gcgcggcggggagggGCCgg--- 3'
 		25 - 44
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.903 2.5e-8 0.893 5.9e-8 20 Click to see details
GSE21032 Prostate cancer -0.298 3.1e-3 -0.246 1.2e-2 83 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.504 5.1e-3 0.589 9.7e-4 25 Click to see details
GSE19783 ER- ER- breast cancer 0.283 5.7e-3 0.255 1.2e-2 79 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.783 6.3e-3 0.667 2.5e-2 9 Click to see details
GSE32688 Pancreatic cancer -0.402 1.1e-2 -0.343 2.7e-2 32 Click to see details
GSE19536 Breast cancer 0.158 5.8e-2 0.172 4.4e-2 100 Click to see details
GSE28544 Breast cancer 0.314 6.8e-2 0.577 1.6e-3 24 Click to see details
GSE21687 Ependynoma primary tumors -0.172 8.7e-2 -0.086 2.5e-1 64 Click to see details
GSE38226 Liver fibrosis -0.104 3.3e-1 -0.071 3.8e-1 21 Click to see details
GSE17498 Multiple myeloma -0.069 3.4e-1 -0.070 3.3e-1 40 Click to see details
GSE19783 ER+ ER+ breast cancer -0.1 3.4e-1 -0.084 3.6e-1 20 Click to see details
GSE28260 Renal cortex and medulla 0.098 3.8e-1 -0.022 4.7e-1 13 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.039 4.3e-1 0.046 4.1e-1 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.035 4.4e-1 0.088 3.4e-1 23 Click to see details
GSE26953 Aortic valvular endothelial cells -0.032 4.4e-1 -0.082 3.5e-1 24 Click to see details
GSE19350 CNS germ cell tumors 0.009 4.9e-1 0.021 4.7e-1 12 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA 0.478 0.02 0.540 0.01 18 Click to see details
PCPG -0.979 0.07 -1.000 0.5 3 Click to see details
HNSC -0.188 0.12 -0.205 0.1 42 Click to see details
CHOL -0.38 0.16 -0.283 0.23 9 Click to see details
KIRC 0.122 0.16 0.122 0.16 68 Click to see details
THCA -0.122 0.18 -0.143 0.14 59 Click to see details
KIRP -0.15 0.21 -0.108 0.28 32 Click to see details
LIHC 0.111 0.22 0.081 0.29 49 Click to see details
CESC -0.673 0.27 -1.000 0.5 3 Click to see details
PRAD -0.075 0.3 -0.083 0.28 50 Click to see details
COAD -0.191 0.33 -0.048 0.46 8 Click to see details
KICH 0.087 0.34 -0.047 0.41 25 Click to see details
BRCA -0.044 0.35 -0.021 0.42 84 Click to see details
LUAD -0.082 0.4 -0.133 0.34 12 Click to see details
STAD -0.046 0.4 -0.041 0.41 32 Click to see details
UCEC -0.057 0.41 0.089 0.36 19 Click to see details
ESCA -0.064 0.43 -0.100 0.38 11 Click to see details
LUSC -0.03 0.43 -0.086 0.3 38 Click to see details
PAAD 0.002 0.5 0.000 0.5 4 Click to see details
PAAD 0.002 0.5 0.000 0.5 4 Click to see details
PAAD 0.002 0.5 0.000 0.5 4 Click to see details
300 hsa-miR-423-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038011 RABAC1 Rab acceptor 1 1 1
MIRT038012 NMD3 NMD3 ribosome export adaptor 1 1
MIRT038013 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 1 1
MIRT038014 RGPD2 RANBP2-like and GRIP domain containing 2 1 1
MIRT038015 TSPYL6 TSPY like 6 1 1
MIRT038016 HIST2H2BE histone cluster 2 H2B family member e 1 1
MIRT038017 USP6 ubiquitin specific peptidase 6 1 1
MIRT038018 PGAM4 phosphoglycerate mutase family member 4 2 3
MIRT038019 DIP2A disco interacting protein 2 homolog A 1 1
MIRT038020 NOS1AP nitric oxide synthase 1 adaptor protein 2 3
MIRT038021 IGDCC4 immunoglobulin superfamily DCC subclass member 4 1 1
MIRT038022 RC3H1 ring finger and CCCH-type domains 1 1 1
MIRT038023 KIF1A kinesin family member 1A 1 1
MIRT038024 SRSF11 serine and arginine rich splicing factor 11 1 1
MIRT038025 BCLAF1 BCL2 associated transcription factor 1 1 1
MIRT038026 RPS15A ribosomal protein S15a 1 1
MIRT038027 CCNI cyclin I 1 1
MIRT038028 GDF11 growth differentiation factor 11 1 1
MIRT038029 FAM127A retrotransposon Gag like 8C 1 1
MIRT038030 NME2 NME/NM23 nucleoside diphosphate kinase 2 1 1
MIRT038031 COX1 cytochrome c oxidase subunit I 1 1
MIRT038032 ARPC1A actin related protein 2/3 complex subunit 1A 1 1
MIRT038033 MYBL2 MYB proto-oncogene like 2 1 1
MIRT038034 ND5 NADH dehydrogenase, subunit 5 (complex I) 1 1
MIRT038035 NDE1 nudE neurodevelopment protein 1 1 1
MIRT038036 CDKN2A cyclin dependent kinase inhibitor 2A 1 1
MIRT038037 TDRKH tudor and KH domain containing 1 1
MIRT038038 AKAP13 A-kinase anchoring protein 13 1 1
MIRT038039 RPS10 ribosomal protein S10 1 1
MIRT038040 PRPF38B pre-mRNA processing factor 38B 1 1
MIRT038041 PPIAL4G peptidylprolyl isomerase A like 4G 1 1
MIRT038042 MRPL34 mitochondrial ribosomal protein L34 1 1
MIRT038043 NDRG1 N-myc downstream regulated 1 1 1
MIRT038044 ZBTB34 zinc finger and BTB domain containing 34 1 1
MIRT038045 ATP6 ATP synthase F0 subunit 6 1 1
MIRT038046 ZFP36L1 ZFP36 ring finger protein like 1 1 1
MIRT038047 COQ6 coenzyme Q6, monooxygenase 1 1
MIRT038048 EPM2AIP1 EPM2A interacting protein 1 1 1
MIRT038049 REPS1 RALBP1 associated Eps domain containing 1 1 1
MIRT038050 AAR2 AAR2 splicing factor homolog 1 1
MIRT038051 PPIA peptidylprolyl isomerase A 1 1
MIRT038052 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 7
MIRT038053 DDX21 DExD-box helicase 21 1 1
MIRT038054 SLC6A6 solute carrier family 6 member 6 1 1
MIRT038055 RPS2 ribosomal protein S2 1 1
MIRT038056 CSTB cystatin B 1 1
MIRT038057 ABCC5 ATP binding cassette subfamily C member 5 2 5
MIRT038058 PAK1 p21 (RAC1) activated kinase 1 1 1
MIRT038059 ERRFI1 ERBB receptor feedback inhibitor 1 1 1
MIRT038060 CEACAM6 carcinoembryonic antigen related cell adhesion molecule 6 1 1
MIRT038061 FHOD1 formin homology 2 domain containing 1 1 1
MIRT038062 LMNB2 lamin B2 1 1
MIRT038063 NECAP1 NECAP endocytosis associated 1 1 1
MIRT038064 NPLOC4 NPL4 homolog, ubiquitin recognition factor 1 1
MIRT038065 PMPCA peptidase, mitochondrial processing alpha subunit 1 1
MIRT038066 C12orf10 chromosome 12 open reading frame 10 1 1
MIRT038067 DDX54 DEAD-box helicase 54 1 1
MIRT038068 VAC14 Vac14, PIKFYVE complex component 1 1
MIRT038069 RUNX1 runt related transcription factor 1 1 1
MIRT038070 FAM98A family with sequence similarity 98 member A 1 1
MIRT038071 EPN1 epsin 1 1 1
MIRT038072 TMUB1 transmembrane and ubiquitin like domain containing 1 1 1
MIRT038073 UBE2L3 ubiquitin conjugating enzyme E2 L3 1 1
MIRT038074 FAM110B family with sequence similarity 110 member B 1 1
MIRT038075 MICALL1 MICAL like 1 1 1
MIRT038076 PNRC1 proline rich nuclear receptor coactivator 1 1 1
MIRT038077 DLX5 distal-less homeobox 5 1 1
MIRT038078 ZNF655 zinc finger protein 655 1 1
MIRT038079 FAAH fatty acid amide hydrolase 1 1
MIRT038080 ATN1 atrophin 1 1 1
MIRT038081 ATP6V1E1 ATPase H+ transporting V1 subunit E1 1 1
MIRT038082 SLC9A3R1 SLC9A3 regulator 1 1 1
MIRT038083 NOLC1 nucleolar and coiled-body phosphoprotein 1 1 1
MIRT038084 PLCB1 phospholipase C beta 1 5 1
MIRT038085 SQSTM1 sequestosome 1 1 1
MIRT038086 CLSTN1 calsyntenin 1 1 1
MIRT038087 ULK1 unc-51 like autophagy activating kinase 1 1 1
MIRT038088 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 1 1
MIRT038089 EPB41 erythrocyte membrane protein band 4.1 1 1
MIRT038090 HIST1H1C histone cluster 1 H1 family member c 1 1
MIRT038091 AGPAT6 glycerol-3-phosphate acyltransferase 4 1 1
MIRT038092 TPGS2 tubulin polyglutamylase complex subunit 2 1 1
MIRT038093 FKBP4 FK506 binding protein 4 1 1
MIRT038094 GNG12 G protein subunit gamma 12 1 1
MIRT038095 RPS9 ribosomal protein S9 1 1
MIRT038096 RPL18A ribosomal protein L18a 1 1
MIRT038097 CCND2 cyclin D2 1 1
MIRT038098 PCBP1 poly(rC) binding protein 1 1 1
MIRT038099 AP3M1 adaptor related protein complex 3 mu 1 subunit 1 1
MIRT038100 PDPK1 3-phosphoinositide dependent protein kinase 1 4 2
MIRT038101 WBP2 WW domain binding protein 2 1 1
MIRT038102 CLSPN claspin 1 1
MIRT038103 PTTG1 pituitary tumor-transforming 1 1 1
MIRT038104 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT038105 GAPDH glyceraldehyde-3-phosphate dehydrogenase 1 1
MIRT038106 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT038107 KCTD2 potassium channel tetramerization domain containing 2 1 1
MIRT038108 RNF139 ring finger protein 139 1 1
MIRT038109 ARHGAP32 Rho GTPase activating protein 32 1 1
MIRT038110 HIST1H2BK histone cluster 1 H2B family member k 1 1
MIRT038111 SAR1B secretion associated Ras related GTPase 1B 1 1
MIRT038112 PA2G4 proliferation-associated 2G4 1 1
MIRT038113 UBE2D3 ubiquitin conjugating enzyme E2 D3 1 1
MIRT038114 GTPBP1 GTP binding protein 1 1 1
MIRT038115 HIST2H2BF histone cluster 2 H2B family member f 1 1
MIRT038116 NUTM1 NUT midline carcinoma family member 1 1 1
MIRT038117 COPS7A COP9 signalosome subunit 7A 1 1
MIRT038118 POLR3H RNA polymerase III subunit H 1 1
MIRT038119 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT038120 NFKB2 nuclear factor kappa B subunit 2 1 1
MIRT038121 SLC7A2 solute carrier family 7 member 2 1 1
MIRT038122 TIMP3 TIMP metallopeptidase inhibitor 3 1 1
MIRT038123 PTMA prothymosin, alpha 1 1
MIRT038124 CSDE1 cold shock domain containing E1 1 1
MIRT038125 CD81 CD81 molecule 1 1
MIRT038126 CCNF cyclin F 1 1
MIRT038127 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 1 1
MIRT038128 RCE1 Ras converting CAAX endopeptidase 1 1 1
MIRT038129 FAM83H family with sequence similarity 83 member H 1 1
MIRT038130 HES4 hes family bHLH transcription factor 4 1 1
MIRT038131 FAM189B family with sequence similarity 189 member B 2 3
MIRT038132 SLC48A1 solute carrier family 48 member 1 1 1
MIRT038133 SNX8 sorting nexin 8 1 1
MIRT038134 ZYX zyxin 1 1
MIRT038135 DRAP1 DR1 associated protein 1 1 1
MIRT038136 TEX2 testis expressed 2 1 1
MIRT038137 C15orf39 chromosome 15 open reading frame 39 1 1
MIRT038138 LRCH4 leucine rich repeats and calponin homology domain containing 4 1 1
MIRT038139 CHD8 chromodomain helicase DNA binding protein 8 1 1
MIRT038140 MYC MYC proto-oncogene, bHLH transcription factor 1 1
MIRT038141 TRIM28 tripartite motif containing 28 1 1
MIRT038142 SEPN1 selenoprotein N 1 1
MIRT038143 MIER2 MIER family member 2 1 1
MIRT038144 HOXA7 homeobox A7 1 1
MIRT038145 PRRC2A proline rich coiled-coil 2A 1 1
MIRT038146 SRP54 signal recognition particle 54 1 1
MIRT038147 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT038148 SRM spermidine synthase 2 7
MIRT038149 GTF2F1 general transcription factor IIF subunit 1 1 1
MIRT038150 HIPK2 homeodomain interacting protein kinase 2 1 1
MIRT038151 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 1 1
MIRT038152 COPZ1 coatomer protein complex subunit zeta 1 1 1
MIRT038153 GLUL glutamate-ammonia ligase 1 1
MIRT038154 PPARGC1B PPARG coactivator 1 beta 1 1
MIRT038155 PKM pyruvate kinase, muscle 1 1
MIRT038156 MTCH2 mitochondrial carrier 2 1 1
MIRT038157 ACTG1 actin gamma 1 1 1
MIRT038158 MTMR3 myotubularin related protein 3 1 1
MIRT038159 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 1 1
MIRT038160 DDX24 DEAD-box helicase 24 1 1
MIRT038161 TUBB tubulin beta class I 1 1
MIRT038162 NSD1 nuclear receptor binding SET domain protein 1 2 3
MIRT038163 PAX2 paired box 2 2 3
MIRT038164 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT038165 CEBPB CCAAT/enhancer binding protein beta 1 1
MIRT038166 YARS tyrosyl-tRNA synthetase 1 1
MIRT038167 STRIP2 striatin interacting protein 2 1 1
MIRT038168 KCTD15 potassium channel tetramerization domain containing 15 1 1
MIRT038169 RPL23A ribosomal protein L23a 1 1
MIRT038170 MFGE8 milk fat globule-EGF factor 8 protein 1 1
MIRT038171 SF3B3 splicing factor 3b subunit 3 2 5
MIRT038172 RPL10 ribosomal protein L10 1 1
MIRT038173 SALL1 spalt like transcription factor 1 1 1
MIRT038174 BCCIP BRCA2 and CDKN1A interacting protein 1 1
MIRT038175 PSMD6 proteasome 26S subunit, non-ATPase 6 1 1
MIRT038176 MED28 mediator complex subunit 28 2 3
MIRT038177 MESDC1 talin rod domain containing 1 1 1
MIRT038178 DAG1 dystroglycan 1 1 1
MIRT053601 TFF1 trefoil factor 1 3 1
MIRT060312 RPS6KA4 ribosomal protein S6 kinase A4 2 2
MIRT113259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT246175 TXNIP thioredoxin interacting protein 2 6
MIRT253003 CALM3 calmodulin 3 2 2
MIRT254645 NF2 neurofibromin 2 2 2
MIRT283307 UBFD1 ubiquitin family domain containing 1 2 4
MIRT348822 U2AF2 U2 small nuclear RNA auxiliary factor 2 2 2
MIRT369280 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT448590 PCP4L1 Purkinje cell protein 4 like 1 2 2
MIRT449933 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT451072 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT451722 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451796 TLR5 toll like receptor 5 2 2
MIRT454761 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT454905 SEPT8 septin 8 2 17
MIRT455511 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT455534 GJB1 gap junction protein beta 1 2 2
MIRT456322 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 2 2
MIRT456420 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT456577 NID1 nidogen 1 2 2
MIRT457530 ZMAT5 zinc finger matrin-type 5 2 2
MIRT458422 KLHL38 kelch like family member 38 2 6
MIRT459072 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 2 2
MIRT459510 TACR3 tachykinin receptor 3 2 2
MIRT460957 MUL1 mitochondrial E3 ubiquitin protein ligase 1 2 2
MIRT462614 C20orf27 chromosome 20 open reading frame 27 2 2
MIRT463958 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT464328 UST uronyl 2-sulfotransferase 2 2
MIRT464375 URM1 ubiquitin related modifier 1 2 2
MIRT466752 SYNGR2 synaptogyrin 2 2 2
MIRT467206 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT467294 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT467370 SP1 Sp1 transcription factor 2 2
MIRT468366 SETD8 lysine methyltransferase 5A 2 2
MIRT470189 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT470469 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470813 PLXND1 plexin D1 2 2
MIRT471415 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT472958 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT473207 MINK1 misshapen like kinase 1 2 4
MIRT473434 MDM4 MDM4, p53 regulator 2 2
MIRT473741 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT474273 LASP1 LIM and SH3 protein 1 2 2
MIRT477211 EVI5L ecotropic viral integration site 5 like 2 2
MIRT477700 EFHD2 EF-hand domain family member D2 2 2
MIRT477781 E2F3 E2F transcription factor 3 2 2
MIRT478657 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT479241 CHTF8 chromosome transmission fidelity factor 8 2 2
MIRT481453 ARRB2 arrestin beta 2 2 2
MIRT482151 AK2 adenylate kinase 2 2 2
MIRT482660 FAM195B MAPK regulated corepressor interacting protein 1 2 4
MIRT483709 ASPH aspartate beta-hydroxylase 2 2
MIRT484556 BARHL1 BarH like homeobox 1 2 6
MIRT484675 ZBTB46 zinc finger and BTB domain containing 46 2 8
MIRT485697 CCDC64 BICD family like cargo adaptor 1 2 4
MIRT485948 BRSK1 BR serine/threonine kinase 1 2 2
MIRT486535 CLCN7 chloride voltage-gated channel 7 2 2
MIRT487030 LIMS2 LIM zinc finger domain containing 2 2 4
MIRT487048 C10orf55 chromosome 10 open reading frame 55 2 2
MIRT487089 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT487463 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487485 BANP BTG3 associated nuclear protein 2 4
MIRT487882 CASZ1 castor zinc finger 1 2 4
MIRT488413 NKX6-2 NK6 homeobox 2 2 4
MIRT489230 ASCL2 achaete-scute family bHLH transcription factor 2 2 4
MIRT489300 B4GALNT4 beta-1,4-N-acetyl-galactosaminyltransferase 4 2 2
MIRT489364 SYNGR1 synaptogyrin 1 2 4
MIRT489480 SLITRK5 SLIT and NTRK like family member 5 2 2
MIRT489647 ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 2 4
MIRT489664 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT490918 STRN4 striatin 4 2 2
MIRT491504 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT491626 RIN3 Ras and Rab interactor 3 2 2
MIRT491691 MNT MAX network transcriptional repressor 2 4
MIRT491894 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT491991 UNK unkempt family zinc finger 2 2
MIRT492114 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 2 2
MIRT492189 SOX12 SRY-box 12 5 2
MIRT492992 NAV1 neuron navigator 1 2 2
MIRT493009 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT493231 MEX3A mex-3 RNA binding family member A 2 2
MIRT493434 KCNK3 potassium two pore domain channel subfamily K member 3 2 2
MIRT493726 GPRIN1 G protein regulated inducer of neurite outgrowth 1 2 2
MIRT493983 EIF1 eukaryotic translation initiation factor 1 2 4
MIRT494370 SOLH calpain 15 1 1
MIRT494585 ATG9A autophagy related 9A 2 2
MIRT494665 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT494794 ANKRD13B ankyrin repeat domain 13B 2 4
MIRT496595 TAGLN transgelin 2 2
MIRT496775 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 2 2
MIRT497819 STAT5B signal transducer and activator of transcription 5B 2 2
MIRT498182 CREB1 cAMP responsive element binding protein 1 2 2
MIRT499186 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT500208 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 2 4
MIRT501015 SPATA2 spermatogenesis associated 2 2 6
MIRT501095 SLC5A6 solute carrier family 5 member 6 2 4
MIRT507872 CBX6 chromobox 6 2 2
MIRT509415 MCM7 minichromosome maintenance complex component 7 2 6
MIRT544297 TSPYL1 TSPY like 1 2 2
MIRT552011 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT561765 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT568305 BAK1 BCL2 antagonist/killer 1 2 2
MIRT573517 MMP17 matrix metallopeptidase 17 2 2
MIRT574579 NFIX nuclear factor I X 2 2
MIRT575680 Map1b microtubule-associated protein 1B 2 2
MIRT606935 CDK15 cyclin dependent kinase 15 2 2
MIRT642007 NCS1 neuronal calcium sensor 1 2 2
MIRT644451 ALDOC aldolase, fructose-bisphosphate C 2 2
MIRT654231 RNF165 ring finger protein 165 2 2
MIRT655874 NFASC neurofascin 2 2
MIRT661923 MLN motilin 2 2
MIRT692263 SLC2A5 solute carrier family 2 member 5 2 2
MIRT694387 MTA1 metastasis associated 1 2 2
MIRT705555 ARID5B AT-rich interaction domain 5B 2 2
MIRT710756 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT711005 CCDC106 coiled-coil domain containing 106 2 2
MIRT712118 TMEM11 transmembrane protein 11 2 2
MIRT713436 AJAP1 adherens junctions associated protein 1 2 2
MIRT722673 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT731653 FAM3A family with sequence similarity 3 member A 3 1
MIRT735672 USF2 upstream transcription factor 2, c-fos interacting 3 0
MIRT736182 CXCL12 C-X-C motif chemokine ligand 12 2 0
MIRT736539 TNIP2 TNFAIP3 interacting protein 2 2 0
MIRT737112 LOC105371414 uncharacterized LOC105371414 3 0
MIRT737113 ADCY3 adenylate cyclase 3 3 0
MIRT737402 CASC9 cancer susceptibility 9 (non-protein coding) 3 0
MIRT755749 SRF serum response factor 4 1
MIRT755800 CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 3 1
MIRT755861 MTM1 myotubularin 1 4 1
MIRT756274 SLIT2 slit guidance ligand 2 5 1
MIRT756275 PGM5-AS1 PGM5 antisense RNA 1 5 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-423 Bio-Oss NULL NULL Microarray osteoblast-like cell line (MG63) 20224834 2010 up-regulated
miR-423 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-423-5p 5-Fluorouracil approved 3385 Microarray HCT-116 colon cancer cell line 19956872 2010 down-regulated
miR-423-5p 5-Fluorouracil approved 3385 Microarray HCT-8 colon cancer cell line 19956872 2010 down-regulated
miR-423-5p Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-423-5p Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 down-regulated
miR-423-5p N-ethyl-N-nitrosourea NULL 12967 Quantitative real-time PCR mouse liver 21029445 2010 up-regulated
miR-423-5p Morphine approved 5288826 Microarray human monocyte-derived macrophages (h-mdms) infection with HIV-1 20564181 2010 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-423 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-423 Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-mir-423 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-mir-423 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-423 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-423 Cisplatin 5460033 NSC119875 approved sensitive cell line (KYSE)
hsa-mir-423 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-423 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-423-5p Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-423-5p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (Huh-7, PLC)
hsa-miR-423-5p Temozolomide 5394 NSC362856 approved resistant Low Glioma cell line (U87, U251)
hsa-miR-423-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-423-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-423-5p Docetaxel 148124 NSC628503 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-423-5p Fluorouracil 3385 NSC19893 approved sensitive High Colorectal Cancer cell line (DLD-1)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant Low Triple-Negative Breast Cancer cell line (MDA-MB-231)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant Low Triple-Negative Breast Cancer cell line (MDA-MB-231)
hsa-miR-423-5p Erlotinib 176870 NSC718781 approved resistant High Head And Neck Squamous Cell Carcinoma cell line (HN6)
hsa-miR-423-5p Paclitaxel 36314 NSC125973 approved sensitive High Breast Cancer cell line (BCap37)
hsa-miR-423-5p Imatinib 5291 NSC743414 approved sensitive Low Chronic Myelogenous Leukemia tissue
hsa-miR-423-5p Taxane 9548828 resistant Low Prostate Cancer cell line (LNCaP, 22Rv-1, C4-2)
hsa-miR-423-5p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (Huh-7, PLC)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-423-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (mitochondrial RNA)
hsa-miR-423-5p Paclitaxel 36314 NSC125973 approved resistant cell line (SKVO3ip1)
hsa-miR-423-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM17)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-423-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-423-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-miR-423-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-423-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-423-5p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-423-5p Bortezomib 387447 NSC681239 approved resistant cell line (CCRF-CEM) (200 nM)
hsa-miR-423-5p Bortezomib 387447 NSC681239 approved resistant cell line (CCRF-CEM) (100 nM)
hsa-miR-423-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-423-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-423-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine sensitive cell line (Bats-72)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)
hsa-miR-423-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MDAH-2774)

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