miRTarBase - #MIRT038632


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pre-miRNA Information
pre-miRNA hsa-mir-125b-2   
Genomic Coordinates chr21: 16590237 - 16590325
Synonyms MIRN125B2, MIR125B2
Description Homo sapiens miR-125b-2 stem-loop
Comment This miRNA sequence is predicted based on homology to a verified miRNA from mouse .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-125b-2-3p
Sequence 54| UCACAAGUCAGGCUCUUGGGAC |75
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 21 + 16590292 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs575583557 6 dbSNP
rs1331783293 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SYT2   
Synonyms CMS7, MYSPC, SytII
Description synaptotagmin 2
Transcript NM_001136504   
Other Transcripts NM_177402   
Expression
Putative miRNA Targets on SYT2
3'UTR of SYT2
(miRNA target sites are highlighted)		 
>SYT2|NM_001136504|3'UTR
   1 ACAGCAGCGGCTGGGACCCCACACCTTTCACGGACACTGACAAGATCCAGAGCTATCAATACCTCAGTTATGCAACCTTA
  81 GAGGTTTTCTTTTTTCTTTCATTTGTTGGGTGGTTGTGTCCTTGTTTTTCCTTGTTTTTCTCTTTTTAAAGACCAACTTC
 161 CCTTTGATGGCTGTGTGAGGAGAGTCCCCTAAGAGGTGAAAGAGAAGCCTGGCTCTGTTCACGGTCCCAGGAGCTGTCCT
 241 TGCTGCATGCCCTGTCACAGTTCCCTCGACTCTTTCAAAGCTTCACATCTGCCTCACCCCAAGCGAGGCTCTCTACTGGC
 321 ACAAACTTGCAGCAGTTCCTGTTTTTTGAGCCTTCTGGACCAACAAAATGGCAGCACATCCTGCTTCCTGACAGGGAAGG
 401 CATCACAGTGGCCAATGATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
 481 GTGTGTGTCTTTGAGCATTTCTCTTCATTCCTGGAATGTGTGTGTGTGTGTGTCTCTTTGAGCATCTCTCTTCATTCCTG
 561 GAATGAGCCATGGACAGTAAAGTTGTGTGGGAAAAGAAGGCTCTTTGGGGACCCTGACATGAAGAAGTCCACTAAGTGGG
 641 AGATCTTCTCTCATCTATGGCAAAGTCTCAGGATCCTGTTCAGATATCGGGGCTTTCATACTCCTGTTGGTGGCTATTTG
 721 GGAGGCAGCAAGATGTGAAGACTGGATGTGTTCAGAACTAGGACCAAACGATGCCATCAAATACTTCCTCCTGCCAGTCA
 801 TGGTTTCCCCAGAAGTGTAGTTCCTGGGACATTCATGGATATGAGCTATTCACTAGTTGGGTCAGACTAACAGGGACTCT
 881 CAGTCCCAAAATCTCACTCTTATTGACAATAAATATCAAACTATGAAGAAACAGAAGTCCCATTACCAGAAAGACCAAAA
 961 TTAAACTCCTGGATCTTCACCCCATCCAGTGGGAAACACAGATGCTTTCTCCCTTTCCAGAATATAAGCAGCCAAGTTCA
1041 TTTGCATTTATTCCCCATTGTGCTTTTGCTTCTGTTTCTCTTTTAAGTGGAGCAACACTGTCTGAAGACACGTTATCTGT
1121 GCAGAGCCAGAGAACTTTAAAAGGAAAGTTTAAATGTTCTTAGTTCTCCTGAGGTCCAGGTAAGAAGGGGGTGGTAAGAA
1201 GAGGATGGGGGACAGATGGCTGAGATCCCTTGGGAGGAGATATAGGGGAGCACTGGAATTCCCCCGACTCCCACTCCTTG
1281 CTCCCTTGGCCCTCTGCCCTCCATGCTGGAGAGCTGATAGGTAGCTGGAGTGGCCCAGGGAGACCTATGGGAAGGACCCG
1361 TCCTACCATTAGGGGGCTTCTCTCTATGAATGCTAAGAAACAAAGGGCATCCATTCCAAATGAGTAGCAGAGGTGACCTT
1441 CTAGGGTTTCTACCCATGCTCAGTTGTATCCCATTCCCTGTTCACCTTTTGTCCCCAGCACTGATATAAAAGCCATATAT
1521 ATGTTAGTCAGGTTTGCACTGAGTCTTCTTCCAATCCTTCAGCCTGGACAACAGAGTGAGGTCCCCTTGTGGCCAGAGGC
1601 CAGCCCTCCTTGCCTGCCTTCCTTTGACCTCTCTTTTCCATCCATGAAGCCCTCAGGCCCTTGCCATTTTTTCACCACAG
1681 AAAACTCATGGCTTCTCCAGAAGCCTGAGTATCTCTCTTTCCCAGCACAAATGGCAGCATCTCTATCCTGCCCCATCTGG
1761 GCCACTTCAGCTTCCTGTAGACACCCAAGACAGATGGACAGTGTTGGAGGGAATCAGGCTTTGAGGATCCAGTGTGAAGA
1841 AGTTGCAGAGTGTCTTTTTATTTTATTTTAAAAAGGGGGAAGGGGCTTTTGGTTTTGCTTTGTTTTTTGGATGAAGGAGT
1921 GAGGGAAATGAGGGAATACCCCCACCAGAAACAGACTGGAAAGCCTGCCTGTCTCTTGGAGATCCTTCTTTGTCTTGTTA
2001 GTGGTACATGGGAAGTTATGTTTTTACTGGTGTGTGTGTGTGTGTGTGTGTGTGTACTTAATGATGGGAAGGTAAGACTC
2081 TGATCAGGATTATGAACTGCGGTCCTTGGGACCAAAGGTGTGGTCATGGTAGAGAGTTGTAGGACAATAGGGTGTTTTCA
2161 GAATCTGGGTGGCCACAGAGTGGGATTTCCTGGTATGGACATCAGAAGTCACTGGACTCTTCTCCCAACCCCAGAGTTAT
2241 GGGATTTTGGTGCTTTCTCAGGGTCTCTCCCCAGACTCACTCTTCTCACCCATATCCCACAGACTCACTCATGGAGACCC
2321 CCTTGTCAATATCCCCTCTACCTTTACTCCTTTGCCCTTTCCCAATTCATCTTCTACCACCTGGATTCTTTTCCATTCAT
2401 GAACTTCATTCAGCCCTTCCAAAGCCCAAGATTTGCATTCCCTTGACAGGGAGGAAAGGCAATGGTAGGAACCTCTGGTG
2481 GTCTGGGTGTCTATGTGCCTGGTGACCAGGGCTGGATTTTTATTACTCTGAGCCCACTGCTAGTGAGGAGCCTTGAGGGG
2561 TGGGGACAGGTTGCTGAGTGATTTTGAACGTTGACACCAGTGTGGAGCCAGTGTGGGTGTGGGGAGCAGTGCCTTCCTCA
2641 GGTCCCAGCTGGTCCTGATATGCCACGTAGTGGATGGCATCTGTCTTGGTCCATGGGCTTGGTGGGAACATGCTTCTGCT
2721 TGTGTGTTTTCCATACCTGAGGGCTGACGTAGCTTAAACCACAGGGCATCATGCCAAACACTCACTGCTGGGCAGGTTTA
2801 TTTCTGGGGATGTCAGGGTACTGGGGTGTAGGCACTAAGCAGGATAGAGTTAGGGTGTCTGGCTAGTAAGGGGTTCTGGA
2881 CGCCTCTGGGGCTGTGAGTTTTCATCTCAAAGTCTGTTCCAGAGAAAGGAAAGTAGTATAGAGGTGATTTTTAGAGAAGC
2961 TGAGACCATGAAAACAAGCCTAATCCCATCCAGAAACTGGGGTAAAGTCTGAAAGTTCGTTTTCTTCTTCCTCCCTGAAT
3041 AATTGTTCCAGAAGGGATGCTAACTCTGCCAGAGCTACAGGCAGATTTTTGGGCTTTGGAAGTGGAAGCTGAGGCCTGGG
3121 GAAGGCTGGGTAAGGAATGCTGGGGCAATCTCAGACAGTAGGCAGGTGCTTGGCATGAATGAGAAGTGACTTTCCTGGAG
3201 TCCCTCAGTAGAGGATGAGATAGCAGGGATTAGGCCACAGTCTCAGATCCTGATCTTTTTTCTTCCTAGGAAAGCATACA
3281 TAACTTGTGTCTGCAGAATCAGTGTGGGATGATTTTGCTGGCCCAAGGCTTCAGCGAGAGGGAGAAGAGAGGTCACTACA
3361 GCCCTCCTGTGGGTAAAAGCAGCTCTCTTATAAACCTGCCTCCATGCAGTGGGGTGGGGGTAAGGGTGGGTGACAGCAAA
3441 GAGGTTGAGGAACCTCCCTGGGTTTGGGGAGTGAGAGCTTCCATGTTCCCTTAATGTCCTAGGTTAATTCATAAGGCATC
3521 TGAGTCCTGGGTCTCACCCAGCCTCACAGAGAGAAAAACTGTCCCTGAGGGTGTCCCCTCCCACTCAAAGGTAGAAAGAG
3601 ATTGAGCCAGGAACTGCCCTCATATCCTCTGCTCTGCCCCTTCCCTTCCCTTTCCTCTGCCCCTCCCACCTAAAGCTGTT
3681 TGGGGCCCTTTCTCAGAGCCCTGGGTGGTGGCAGGCAGGGAGGAGTCCCAAGATCCTGGTGGCCCTGAGCCCCATGCTAT
3761 GGTTGCCAGATTTGGCAAATAAAAATACAGGATGTCCAGTTACATTTGAATTTCAGTTCAACAACAAACAATTATTAAGT
3841 GTAAATATGTCCTAGGCAAATAGTTGGGACATATACTAAAAAATAATTTGTTGTTTATCTGAAATTCAAATGTAACTGGT
3921 CATCCTGCATTGTGTCTGGGAACCCTACCCTATGACTTTTCCCCCTCTCCCTTTGGTCCCAAGGGGCCAGGAACCCCAAG
4001 GATTTGACTTAACCAGTTTTTTGAACTGCAATATTGAGAAGGGGACACTGTGACTTGAAGACACATGAATTACTTTATTT
4081 TTTAAGCAACAACAAAATAAGAACCTTCTGAAGCCATTTGAGCCTCATCTGCCCCCATCCGTGTATATTTAATTATATAT
4161 AAAAGAAGATAATTACCTAGAAACATATGAACAGAATCTTGTTTAATCAAGATGCATGTCTATAACTTTCTGTAAATAGC
4241 CGCATGGCAATGCTGAGAGTCCCCTTGATCCCCAACCTCAAACCCATTTTACAGAACTGGTTGAGGCTGCTCCTTTGATT
4321 TTATGTCGTGTAAAGTCTTTGTTCCCCAGCCCCACCCCTGCCTCCTCCCATCGGGAAACCCCCCATGGGAGTCATCAGTG
4401 GGCGGGAGTCGGTGCCTGCTCCAGTCCAGCCCTGCCTTGGGAGATGCTGGAGGACCCTGTCGCCCTGAAGGCCTGTTTGC
4481 TGCACATCTGCCTGCAGAGCCAAACCTCAGGGCCCGGTGCAGTGTCCAGCCTGGTATCTGGCATCCCAGTAGCTTCCATG
4561 TTCTGTGTATGTGTGTGGTGTGCCCCTTCCTCCCACTGTTTGAATTCACTGAAAAGCCATAAAGGGGGCCTCCTGCTGGA
4641 GATTTGGCCTCCCTTGGCTCCTCCCAGGAGCCCCCATGTCTCTCCAACTGGCTCCCCACAGACCACTTCTGAAGGGCTCA
4721 CCTGTTGTCACTCCCTCCTGCTCCCTCAGTCCCGTGTCATGAGAATGGACGGTGTCCAGGGCTTCCGGTGGGGTCTCAGG
4801 AGATGCCCATGCTGGCCCTGCCCGAGCTGGCTTTCTCGGCCTGGGTTCACAGTTCAGCTCCATCTCTACGCTGGGCGAGG
4881 AGCAGACAGCAGTGGGACTCCATGGTTCTGGATACCTTTCCTGGGGTCCCTGTGGAGGCAACCAGGATTTTCAGGAGCAG
4961 CCAGTCAGCAGCTCAGCCAGGGATGACAGAACCATCCCTGCTTACTCACCTCTGTAGTGTGAGGGTCTGTGGGTGGTGAT
5041 GGAGGAGGGACTCAGGGAGAGGCCGGTGAATACAGGGGCTGACGCTCTTCCCTCGTGCATCCTCCTGCAGTCTGACAGAA
5121 AGCAGCCCAATAGCGGGGCAACCTCAGGGCTACCAGCGATCCCCTGAGAGTGGGGTGGGCAGGTTCAGCTGTGAGAGAGG
5201 CTCAGGCAGAGCAGGTGTGGACTAAGTCCCCTGACCTTCACACCTGCTCCCCAGAGAAGCCCCAGCCAGTTGCACCAAGT
5281 AGCAGAGGTGAGTAGAGGGGCCTGGGGGCTTCCAAGGCCCCAGGTCATCCTGTTGAACTGAGAGGGACAGGTAGCCCCCC
5361 TGCCTGCGGCCCCTGGCCCCATGGGCACCTGAGGGCAGTACTGCATGGGAAGAGCCCAGGATGCCTCAGGCCTGGCAACT
5441 GTGACAAGTATGAGGAAGGAGAGAGAACGGGAAGGGAATCAGGCAGGGCGCATTCGAGGAGGCCAGAGGTGGCGAGGCAG
5521 GCTTGCCCTGCACAAACCACAACAGAAGTTGCACACAGAAGTCCCAGGGACCTTTGTGCTGGGAACTGAAAGAGTGGGGA
5601 AGGTGGAGGGGACCATTTCAGAGCAGGCTGGAATCAGGTGCTTGGACCAGTGAAGACATGTCTTGCTTCCTCCAGCTCTC
5681 TCTGGGGCCCTCCCACTCTCCACACCCACAGCAGAGACAAATTGAGGCAAGAGTTGAGAGAGCATCTGTCTGGTGAGGTG
5761 ATGGGAGCAGTGTGCATGGGGCACCAGGAGTTCCTCCATCCCACCTGCCTTAGCGATCAGGACTTTAGGGGGGCCTCTTC
5841 AAAGATAGTGACCCTTCTGCCCTGACTCCTGCCCATCTAAGGACTTGATTTGCTGCTTTCTGAAAACCCTGGGGCTGAAA
5921 ACTTCAAAATCAGGGCCTGGCAGAGCCTAGCTTCGCCAAGGTCAGCCCACCAGGAGCCCTGCCTTCGTCTCCATAGGAAG
6001 GACACATGTACAGCCCTTGCCCCCGGCCCTCTCATTCCCACTTCTGCTTGGCAATGCTCTCCATCTCCCTTATGTGGACT
6081 CTTGTTCTTGTCTGATCTCTTGTCAAATTGTTATTTTGTAATGAACTGCGTCTCCTTATTAAAGAAATGAGCTGAAAGAA
6161 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' caGGGUUC--UCG---G-ACUGAACACu 5'
            ||:|:|  |||   | | ||||||| 
Target 5' ttCCTAGGAAAGCATACATAACTTGTGt 3'
 3263 - 3290 154.00 -15.90
2 
miRNA  3' cagggUUCU-CGGA-CUGAACACu 5'
               || | ||:|  :|||||| 
Target 5' gtgggAACATGCTTCTGCTTGTGt 3'
 2702 - 2725 133.00 -11.60
3 
miRNA  3' caGGGUUCUCGGACUGAAC-ACu 5'
            :|:|||: |:|||:||| || 
Target 5' caTCTAAGGACTTGATTTGCTGc 3'
 5874 - 5896 128.00 -17.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN1096180 9 COSMIC
COSN31577303 28 COSMIC
COSN30484326 32 COSMIC
COSN26997673 33 COSMIC
COSN24308648 75 COSMIC
COSN30103881 94 COSMIC
COSN30188402 95 COSMIC
COSN20095787 132 COSMIC
COSN30108010 158 COSMIC
COSN23987775 351 COSMIC
COSN20095786 442 COSMIC
COSN28307130 455 COSMIC
COSN28162814 467 COSMIC
COSN22807569 517 COSMIC
COSN32061030 517 COSMIC
COSN24108710 770 COSMIC
COSN25430758 1166 COSMIC
COSN7983397 1477 COSMIC
COSN26625407 1483 COSMIC
COSN6438098 1919 COSMIC
COSN27287387 2029 COSMIC
COSN27418698 2029 COSMIC
COSN28976110 2029 COSMIC
COSN21899828 2362 COSMIC
COSN8428879 2697 COSMIC
COSN29811912 2871 COSMIC
COSN32083671 3236 COSMIC
COSN21704883 3467 COSMIC
COSN23792582 3696 COSMIC
COSN19657837 4396 COSMIC
COSN26649486 4426 COSMIC
COSN31533606 4446 COSMIC
COSN13507979 4516 COSMIC
COSN32069344 4520 COSMIC
COSN31491285 4602 COSMIC
COSN31570849 4615 COSMIC
COSN31533048 4770 COSMIC
COSN31585307 4913 COSMIC
COSN26508947 4916 COSMIC
COSN15974074 4943 COSMIC
COSN17182628 4974 COSMIC
COSN7198401 4992 COSMIC
COSN31564825 5049 COSMIC
COSN24370747 6022 COSMIC
COSN24370746 6023 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs972806350 3 dbSNP
rs376817511 8 dbSNP
rs186174697 9 dbSNP
rs766721785 10 dbSNP
rs201231352 12 dbSNP
rs1003491475 13 dbSNP
rs200863770 17 dbSNP
rs565813796 19 dbSNP
rs969275841 24 dbSNP
rs748748153 26 dbSNP
rs369306021 31 dbSNP
rs769672009 32 dbSNP
rs745809140 37 dbSNP
rs776635690 48 dbSNP
rs1269105454 52 dbSNP
rs1304464190 55 dbSNP
rs1181468936 56 dbSNP
rs1448892093 57 dbSNP
rs890768229 58 dbSNP
rs1051470432 67 dbSNP
rs932545618 75 dbSNP
rs899673652 77 dbSNP
rs1054280313 78 dbSNP
rs73087556 80 dbSNP
rs1040668905 81 dbSNP
rs1256264714 83 dbSNP
rs532190349 84 dbSNP
rs1391650461 96 dbSNP
rs977480835 105 dbSNP
rs1327892322 109 dbSNP
rs890027260 110 dbSNP
rs1288977705 111 dbSNP
rs1354267502 114 dbSNP
rs950109860 120 dbSNP
rs1048608995 128 dbSNP
rs201555680 134 dbSNP
rs201821317 135 dbSNP
rs138552846 138 dbSNP
rs375004536 138 dbSNP
rs758977378 138 dbSNP
rs867783510 139 dbSNP
rs200478576 141 dbSNP
rs780022195 141 dbSNP
rs917235938 142 dbSNP
rs1182990568 144 dbSNP
rs992155660 157 dbSNP
rs973242673 160 dbSNP
rs958914768 170 dbSNP
rs1257345584 185 dbSNP
rs938767917 185 dbSNP
rs1474520440 186 dbSNP
rs1189650297 188 dbSNP
rs1236442336 198 dbSNP
rs1208095477 210 dbSNP
rs1027813293 222 dbSNP
rs928644695 223 dbSNP
rs980096354 225 dbSNP
rs1308416436 226 dbSNP
rs1374716318 240 dbSNP
rs1286214226 242 dbSNP
rs111689615 244 dbSNP
rs750645262 254 dbSNP
rs1023560058 258 dbSNP
rs1268114522 260 dbSNP
rs572825915 263 dbSNP
rs989389393 267 dbSNP
rs1015772322 268 dbSNP
rs1256929008 291 dbSNP
rs1003941581 292 dbSNP
rs767666221 304 dbSNP
rs1030819650 315 dbSNP
rs1378330621 316 dbSNP
rs1392185928 319 dbSNP
rs1450342909 323 dbSNP
rs1291591321 325 dbSNP
rs549707454 334 dbSNP
rs1374663455 338 dbSNP
rs1361429284 342 dbSNP
rs500569 364 dbSNP
rs1451852505 377 dbSNP
rs1304570601 388 dbSNP
rs1402286118 391 dbSNP
rs1352028806 407 dbSNP
rs561207025 413 dbSNP
rs1165907528 415 dbSNP
rs996798764 417 dbSNP
rs1405360328 418 dbSNP
rs1412174660 420 dbSNP
rs1228722228 421 dbSNP
rs1303090196 422 dbSNP
rs1185177967 423 dbSNP
rs1346226260 424 dbSNP
rs1236056450 425 dbSNP
rs1478487990 426 dbSNP
rs1485830698 426 dbSNP
rs1263493055 428 dbSNP
rs1192539471 430 dbSNP
rs1019270710 433 dbSNP
rs1484677072 439 dbSNP
rs565374387 439 dbSNP
rs1267055950 440 dbSNP
rs1054312695 441 dbSNP
rs1162732210 442 dbSNP
rs935805212 443 dbSNP
rs1431292665 444 dbSNP
rs1222029774 445 dbSNP
rs547363093 445 dbSNP
rs1452991393 447 dbSNP
rs532155802 447 dbSNP
rs10800841 449 dbSNP
rs1156265566 449 dbSNP
rs1166086825 449 dbSNP
rs1262301030 449 dbSNP
rs1283895186 449 dbSNP
rs60259163 449 dbSNP
rs71142541 449 dbSNP
rs71564191 449 dbSNP
rs71564192 449 dbSNP
rs12029661 451 dbSNP
rs370922909 451 dbSNP
rs1321057868 452 dbSNP
rs1192658183 453 dbSNP
rs1251298377 453 dbSNP
rs761347631 453 dbSNP
rs1271135049 454 dbSNP
rs1163591228 455 dbSNP
rs776266935 455 dbSNP
rs915976163 455 dbSNP
rs1220571066 456 dbSNP
rs1408517584 457 dbSNP
rs879162027 457 dbSNP
rs984888813 457 dbSNP
rs1290819461 459 dbSNP
rs199588874 459 dbSNP
rs59534045 459 dbSNP
rs71142540 459 dbSNP
rs113871158 461 dbSNP
rs1328919502 461 dbSNP
rs1425159176 461 dbSNP
rs1414742442 463 dbSNP
rs149900121 463 dbSNP
rs778116778 463 dbSNP
rs796270537 463 dbSNP
rs112188414 465 dbSNP
rs879561557 465 dbSNP
rs1229088296 467 dbSNP
rs950126028 467 dbSNP
rs879853681 469 dbSNP
rs917248142 469 dbSNP
rs1341250902 471 dbSNP
rs1483319596 471 dbSNP
rs1235225917 473 dbSNP
rs1277616857 473 dbSNP
rs1380797902 475 dbSNP
rs1182085430 477 dbSNP
rs1418276409 477 dbSNP
rs1170825964 479 dbSNP
rs1369990890 479 dbSNP
rs1391210601 481 dbSNP
rs1434618149 481 dbSNP
rs1332833047 483 dbSNP
rs1360960339 483 dbSNP
rs1294494254 485 dbSNP
rs1055791471 486 dbSNP
rs1457668414 487 dbSNP
rs937634757 487 dbSNP
rs1210146204 489 dbSNP
rs1246909450 489 dbSNP
rs1296006739 489 dbSNP
rs1299512628 489 dbSNP
rs1342675219 489 dbSNP
rs1444074903 489 dbSNP
rs1454160063 489 dbSNP
rs58376514 489 dbSNP
rs748207668 489 dbSNP
rs755496150 489 dbSNP
rs773617099 489 dbSNP
rs1392945515 497 dbSNP
rs920828344 499 dbSNP
rs1049142385 501 dbSNP
rs973596626 501 dbSNP
rs1158428023 504 dbSNP
rs1386597580 506 dbSNP
rs181370207 511 dbSNP
rs1321539418 513 dbSNP
rs1365660855 516 dbSNP
rs897345299 530 dbSNP
rs1037185148 534 dbSNP
rs138135811 534 dbSNP
rs1386068388 534 dbSNP
rs754366315 534 dbSNP
rs907996504 534 dbSNP
rs938788755 534 dbSNP
rs201982466 542 dbSNP
rs928697133 548 dbSNP
rs1268295135 552 dbSNP
rs768046221 552 dbSNP
rs1450700398 553 dbSNP
rs1197140954 557 dbSNP
rs982947095 558 dbSNP
rs1423779341 560 dbSNP
rs1478626091 563 dbSNP
rs955141176 567 dbSNP
rs1169119256 570 dbSNP
rs948718496 575 dbSNP
rs1458952830 576 dbSNP
rs1029779793 586 dbSNP
rs914550159 587 dbSNP
rs1393954716 623 dbSNP
rs1403841080 629 dbSNP
rs996494732 631 dbSNP
rs1332657975 632 dbSNP
rs1437090749 636 dbSNP
rs1268946158 637 dbSNP
rs751931625 640 dbSNP
rs989831912 642 dbSNP
rs1348561599 650 dbSNP
rs963983225 653 dbSNP
rs1032943647 654 dbSNP
rs1000092087 655 dbSNP
rs559469814 657 dbSNP
rs1355160377 658 dbSNP
rs1294973424 662 dbSNP
rs1207744818 665 dbSNP
rs1251100885 672 dbSNP
rs1200502498 673 dbSNP
rs143967467 675 dbSNP
rs748811233 684 dbSNP
rs1250167224 688 dbSNP
rs1041520902 689 dbSNP
rs1225243680 692 dbSNP
rs1182935719 701 dbSNP
rs1368004038 710 dbSNP
rs1471918958 716 dbSNP
rs1014789451 749 dbSNP
rs1165278062 750 dbSNP
rs1392609194 755 dbSNP
rs1441206968 762 dbSNP
rs1405671803 763 dbSNP
rs965148369 769 dbSNP
rs1368579142 770 dbSNP
rs1411618898 775 dbSNP
rs576888912 776 dbSNP
rs1302184575 778 dbSNP
rs1242148691 779 dbSNP
rs895898918 785 dbSNP
rs1356623834 791 dbSNP
rs780082717 792 dbSNP
rs937330307 799 dbSNP
rs1484302182 804 dbSNP
rs1369291715 808 dbSNP
rs1206561246 815 dbSNP
rs920570870 817 dbSNP
rs1255539430 823 dbSNP
rs1037918914 834 dbSNP
rs769883701 839 dbSNP
rs189764675 843 dbSNP
rs1467590810 848 dbSNP
rs1449115199 850 dbSNP
rs996185054 861 dbSNP
rs897403329 871 dbSNP
rs763417163 872 dbSNP
rs1037640406 880 dbSNP
rs745840178 881 dbSNP
rs781110934 885 dbSNP
rs908069315 886 dbSNP
rs1459976707 895 dbSNP
rs987652096 903 dbSNP
rs113041036 909 dbSNP
rs907346385 910 dbSNP
rs757131359 914 dbSNP
rs1453397966 915 dbSNP
rs1255849332 918 dbSNP
rs1393100196 933 dbSNP
rs1180268509 944 dbSNP
rs183694054 950 dbSNP
rs948768993 958 dbSNP
rs1186965553 983 dbSNP
rs1237431324 985 dbSNP
rs143509224 987 dbSNP
rs1451175153 988 dbSNP
rs1170886966 991 dbSNP
rs1376944704 1005 dbSNP
rs377156394 1012 dbSNP
rs534933167 1037 dbSNP
rs1406230124 1044 dbSNP
rs1433884511 1046 dbSNP
rs1318208203 1050 dbSNP
rs1054457603 1051 dbSNP
rs1383070177 1056 dbSNP
rs1032640878 1062 dbSNP
rs936616975 1063 dbSNP
rs923886179 1067 dbSNP
rs977936392 1078 dbSNP
rs965205231 1085 dbSNP
rs1345978610 1091 dbSNP
rs912369292 1111 dbSNP
rs1241245204 1112 dbSNP
rs985206720 1117 dbSNP
rs1266451296 1123 dbSNP
rs1000124751 1127 dbSNP
rs1027107055 1129 dbSNP
rs1429371194 1130 dbSNP
rs1456184421 1133 dbSNP
rs566272794 1135 dbSNP
rs967315251 1143 dbSNP
rs1020576948 1144 dbSNP
rs995176373 1145 dbSNP
rs1293272136 1156 dbSNP
rs1365993166 1164 dbSNP
rs1014070324 1168 dbSNP
rs961299886 1180 dbSNP
rs1284559931 1188 dbSNP
rs895918314 1188 dbSNP
rs1226591476 1191 dbSNP
rs1290321013 1193 dbSNP
rs1330046948 1194 dbSNP
rs1221170167 1198 dbSNP
rs57612502 1200 dbSNP
rs1211417077 1203 dbSNP
rs1269436600 1213 dbSNP
rs1001533232 1215 dbSNP
rs1302901067 1219 dbSNP
rs1433784878 1220 dbSNP
rs1003098208 1221 dbSNP
rs557282440 1235 dbSNP
rs1160246220 1245 dbSNP
rs899178959 1246 dbSNP
rs1363188208 1257 dbSNP
rs1179623713 1260 dbSNP
rs1013044280 1262 dbSNP
rs538747357 1263 dbSNP
rs1037657968 1265 dbSNP
rs1374213777 1266 dbSNP
rs1425462568 1266 dbSNP
rs1227952295 1270 dbSNP
rs940977039 1272 dbSNP
rs1210249376 1280 dbSNP
rs1247832933 1283 dbSNP
rs1292266775 1286 dbSNP
rs1482670032 1295 dbSNP
rs569718891 1298 dbSNP
rs1253327768 1303 dbSNP
rs549531004 1312 dbSNP
rs1288356870 1315 dbSNP
rs1480712313 1320 dbSNP
rs779196540 1322 dbSNP
rs934678944 1325 dbSNP
rs529655725 1327 dbSNP
rs561058466 1329 dbSNP
rs1164568482 1340 dbSNP
rs1052390723 1343 dbSNP
rs1428361770 1344 dbSNP
rs1310456991 1348 dbSNP
rs1278119380 1349 dbSNP
rs1042300501 1351 dbSNP
rs933515107 1354 dbSNP
rs147516294 1359 dbSNP
rs527527003 1360 dbSNP
rs1453704339 1363 dbSNP
rs953965459 1368 dbSNP
rs1413563876 1370 dbSNP
rs754950679 1372 dbSNP
rs564749665 1374 dbSNP
rs770870081 1386 dbSNP
rs1274948946 1391 dbSNP
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rs961084316 1400 dbSNP
rs1015255756 1404 dbSNP
rs1484013371 1420 dbSNP
rs1183876735 1434 dbSNP
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rs1175798408 1445 dbSNP
rs544758074 1453 dbSNP
rs180938690 1455 dbSNP
rs1170889320 1459 dbSNP
rs769193048 1467 dbSNP
rs879270416 1468 dbSNP
rs563769458 1486 dbSNP
rs1156581303 1494 dbSNP
rs978421432 1497 dbSNP
rs1414429350 1525 dbSNP
rs1459442579 1532 dbSNP
rs543488245 1536 dbSNP
rs753946143 1540 dbSNP
rs1013098233 1543 dbSNP
rs1363293623 1547 dbSNP
rs1432562815 1550 dbSNP
rs1271740797 1552 dbSNP
rs574753283 1554 dbSNP
rs6427958 1555 dbSNP
rs1194707398 1556 dbSNP
rs993125831 1560 dbSNP
rs959902104 1567 dbSNP
rs1034111398 1572 dbSNP
rs12033887 1574 dbSNP
rs1267029306 1584 dbSNP
rs1463285036 1586 dbSNP
rs572736578 1589 dbSNP
rs559196264 1598 dbSNP
rs1195725890 1599 dbSNP
rs903215823 1606 dbSNP
rs539205060 1614 dbSNP
rs1016240053 1620 dbSNP
rs1004869464 1633 dbSNP
rs1470381924 1637 dbSNP
rs1158502829 1638 dbSNP
rs143168515 1650 dbSNP
rs139391099 1652 dbSNP
rs1232183101 1653 dbSNP
rs767761802 1654 dbSNP
rs1345512209 1658 dbSNP
rs919732057 1661 dbSNP
rs4520471 1664 dbSNP
rs1279514506 1666 dbSNP
rs1400287618 1673 dbSNP
rs567245957 1675 dbSNP
rs1315969193 1680 dbSNP
rs1039215706 1698 dbSNP
rs746632399 1712 dbSNP
rs150270241 1717 dbSNP
rs1451327052 1720 dbSNP
rs527586589 1730 dbSNP
rs1391393657 1732 dbSNP
rs74136795 1734 dbSNP
rs1271752751 1742 dbSNP
rs925674311 1743 dbSNP
rs1181599631 1745 dbSNP
rs1459785196 1747 dbSNP
rs978863874 1751 dbSNP
rs773809428 1752 dbSNP
rs945747030 1754 dbSNP
rs551178723 1785 dbSNP
rs1023223765 1790 dbSNP
rs531387871 1809 dbSNP
rs992125886 1815 dbSNP
rs1321317332 1823 dbSNP
rs1367419553 1826 dbSNP
rs563661034 1833 dbSNP
rs1240512418 1837 dbSNP
rs1033584353 1839 dbSNP
rs998974914 1843 dbSNP
rs12033827 1845 dbSNP
rs1018936120 1846 dbSNP
rs1355191834 1850 dbSNP
rs1227011769 1852 dbSNP
rs960220467 1858 dbSNP
rs1252728022 1860 dbSNP
rs1490664561 1860 dbSNP
rs1034185081 1875 dbSNP
rs771854582 1882 dbSNP
rs1182606306 1909 dbSNP
rs1439563893 1909 dbSNP
rs889076906 1918 dbSNP
rs12033091 1919 dbSNP
rs775108762 1921 dbSNP
rs1161480468 1923 dbSNP
rs769475847 1931 dbSNP
rs1386809334 1939 dbSNP
rs1259506866 1940 dbSNP
rs1167813224 1942 dbSNP
rs1368627687 1943 dbSNP
rs932547763 1945 dbSNP
rs745785159 1956 dbSNP
rs898351842 1968 dbSNP
rs1267996068 1971 dbSNP
rs1445302621 1991 dbSNP
rs1317634055 1992 dbSNP
rs1038608322 2002 dbSNP
rs1331514862 2020 dbSNP
rs781255498 2027 dbSNP
rs55680589 2030 dbSNP
rs1342063114 2031 dbSNP
rs886445800 2031 dbSNP
rs981147990 2032 dbSNP
rs1030715926 2034 dbSNP
rs539177847 2044 dbSNP
rs1440932379 2051 dbSNP
rs1402283892 2052 dbSNP
rs1185592340 2053 dbSNP
rs1244751306 2054 dbSNP
rs1491459645 2055 dbSNP
rs1187682295 2056 dbSNP
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rs1371314222 2056 dbSNP
rs1445087280 2056 dbSNP
rs1491469105 2056 dbSNP
rs34702742 2056 dbSNP
rs1265364672 2057 dbSNP
rs915549035 2071 dbSNP
rs1479206386 2076 dbSNP
rs991785565 2082 dbSNP
rs867353061 2087 dbSNP
rs1456346042 2095 dbSNP
rs778839895 2097 dbSNP
rs997814753 2100 dbSNP
rs561342830 2101 dbSNP
rs900754837 2122 dbSNP
rs536132060 2128 dbSNP
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rs1478466418 2142 dbSNP
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rs1008914502 2168 dbSNP
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rs1001022520 2170 dbSNP
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rs547293441 2724 dbSNP
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rs1416598981 2990 dbSNP
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rs980961151 3992 dbSNP
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rs910016142 4000 dbSNP
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rs781502947 4097 dbSNP
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rs925246218 4351 dbSNP
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rs765851191 4754 dbSNP
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rs931653979 4876 dbSNP
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rs1415603823 5000 dbSNP
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rs753130803 5128 dbSNP
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rs1192566082 5138 dbSNP
rs1284833695 5142 dbSNP
rs981353750 5146 dbSNP
rs914949649 5149 dbSNP
rs1053862539 5157 dbSNP
rs191346938 5162 dbSNP
rs1160629452 5172 dbSNP
rs1022355408 5175 dbSNP
rs1295142006 5178 dbSNP
rs923848206 5181 dbSNP
rs981969782 5183 dbSNP
rs371102102 5189 dbSNP
rs557951653 5191 dbSNP
rs1342566983 5193 dbSNP
rs764938936 5194 dbSNP
rs916378901 5197 dbSNP
rs1029602000 5198 dbSNP
rs4950781 5204 dbSNP
rs201990866 5205 dbSNP
rs1485743668 5212 dbSNP
rs1318279898 5213 dbSNP
rs571932940 5215 dbSNP
rs1260627721 5221 dbSNP
rs1027009918 5222 dbSNP
rs4950780 5227 dbSNP
rs76220753 5231 dbSNP
rs1048870007 5253 dbSNP
rs1477240958 5260 dbSNP
rs929021135 5261 dbSNP
rs1019898016 5264 dbSNP
rs1008445854 5268 dbSNP
rs889967175 5269 dbSNP
rs1258260719 5272 dbSNP
rs1296365710 5298 dbSNP
rs1056132183 5300 dbSNP
rs113345115 5307 dbSNP
rs1382926503 5316 dbSNP
rs538583365 5322 dbSNP
rs893529722 5329 dbSNP
rs1053487116 5335 dbSNP
rs761548746 5340 dbSNP
rs1276590932 5353 dbSNP
rs1348447375 5355 dbSNP
rs915399004 5355 dbSNP
rs71635587 5356 dbSNP
rs759789708 5359 dbSNP
rs56997970 5361 dbSNP
rs1201422101 5362 dbSNP
rs1275198266 5364 dbSNP
rs550197475 5367 dbSNP
rs949295029 5368 dbSNP
rs35997680 5370 dbSNP
rs657910 5376 dbSNP
rs397832409 5377 dbSNP
rs34044010 5381 dbSNP
rs916454061 5385 dbSNP
rs770975643 5390 dbSNP
rs1310805640 5397 dbSNP
rs1388815275 5398 dbSNP
rs1017951140 5401 dbSNP
rs1327606488 5403 dbSNP
rs1371654137 5405 dbSNP
rs931443042 5412 dbSNP
rs1355301355 5416 dbSNP
rs376291866 5417 dbSNP
rs537946496 5422 dbSNP
rs1048922406 5423 dbSNP
rs993278526 5424 dbSNP
rs1212020183 5425 dbSNP
rs530567125 5435 dbSNP
rs1253951840 5436 dbSNP
rs1457598342 5437 dbSNP
rs897584201 5443 dbSNP
rs1240551174 5444 dbSNP
rs371252602 5444 dbSNP
rs920017012 5445 dbSNP
rs939031398 5446 dbSNP
rs972819694 5448 dbSNP
rs961373290 5463 dbSNP
rs758536200 5465 dbSNP
rs1166828408 5467 dbSNP
rs747069519 5468 dbSNP
rs1461482156 5469 dbSNP
rs1348754416 5470 dbSNP
rs1040010 5473 dbSNP
rs139563328 5474 dbSNP
rs34822479 5477 dbSNP
rs1429867720 5481 dbSNP
rs187570561 5489 dbSNP
rs954276570 5490 dbSNP
rs915452687 5492 dbSNP
rs553289575 5495 dbSNP
rs1273412491 5498 dbSNP
rs1317749073 5513 dbSNP
rs1012147406 5514 dbSNP
rs1260587602 5524 dbSNP
rs1481220357 5534 dbSNP
rs1181362876 5538 dbSNP
rs1254789087 5540 dbSNP
rs893278367 5542 dbSNP
rs1254084717 5548 dbSNP
rs1032507503 5549 dbSNP
rs922691926 5556 dbSNP
rs546052271 5558 dbSNP
rs1423154131 5563 dbSNP
rs1464942533 5564 dbSNP
rs1263703241 5567 dbSNP
rs964419454 5569 dbSNP
rs1018257013 5577 dbSNP
rs902219631 5582 dbSNP
rs1302189523 5588 dbSNP
rs986491828 5591 dbSNP
rs114627427 5594 dbSNP
rs184068247 5602 dbSNP
rs1298104174 5619 dbSNP
rs895053211 5627 dbSNP
rs1226626624 5628 dbSNP
rs1373883671 5636 dbSNP
rs537964876 5643 dbSNP
rs369000756 5649 dbSNP
rs1035197329 5653 dbSNP
rs1003282904 5656 dbSNP
rs931159510 5658 dbSNP
rs904883010 5662 dbSNP
rs1476936229 5665 dbSNP
rs569286083 5676 dbSNP
rs1191243541 5678 dbSNP
rs1044735482 5684 dbSNP
rs947004064 5691 dbSNP
rs1175337896 5696 dbSNP
rs748700967 5700 dbSNP
rs1359517277 5711 dbSNP
rs1397671936 5712 dbSNP
rs1354738027 5720 dbSNP
rs973236160 5722 dbSNP
rs1218982401 5723 dbSNP
rs940079985 5728 dbSNP
rs935521599 5730 dbSNP
rs1235146335 5731 dbSNP
rs912609024 5731 dbSNP
rs1427545307 5738 dbSNP
rs779402417 5740 dbSNP
rs922758958 5742 dbSNP
rs986783605 5745 dbSNP
rs1218284849 5748 dbSNP
rs1242061742 5752 dbSNP
rs1396616920 5755 dbSNP
rs549397908 5756 dbSNP
rs977263196 5762 dbSNP
rs1455492418 5768 dbSNP
rs942795261 5768 dbSNP
rs1173716997 5773 dbSNP
rs911244444 5777 dbSNP
rs954307576 5778 dbSNP
rs1319932219 5782 dbSNP
rs1194205437 5783 dbSNP
rs1029008048 5788 dbSNP
rs1265358837 5795 dbSNP
rs1436246307 5796 dbSNP
rs1292101475 5797 dbSNP
rs990377032 5800 dbSNP
rs555043318 5802 dbSNP
rs957778701 5814 dbSNP
rs371591474 5815 dbSNP
rs1351661853 5817 dbSNP
rs1225508412 5820 dbSNP
rs1285254113 5821 dbSNP
rs971944505 5827 dbSNP
rs1031828666 5828 dbSNP
rs1250828942 5831 dbSNP
rs555496973 5833 dbSNP
rs1469650742 5834 dbSNP
rs867399234 5834 dbSNP
rs1237474696 5840 dbSNP
rs373956951 5846 dbSNP
rs1159754950 5854 dbSNP
rs1408296438 5870 dbSNP
rs192131877 5872 dbSNP
rs1294488978 5877 dbSNP
rs186939485 5881 dbSNP
rs1462273923 5886 dbSNP
rs1203238896 5895 dbSNP
rs1024625875 5908 dbSNP
rs1444484159 5913 dbSNP
rs1350535114 5922 dbSNP
rs1281423966 5923 dbSNP
rs1280148699 5938 dbSNP
rs147375893 5946 dbSNP
rs116716550 5954 dbSNP
rs1298632312 5955 dbSNP
rs1214060044 5960 dbSNP
rs1392603342 5961 dbSNP
rs1055455946 5962 dbSNP
rs1338849129 5967 dbSNP
rs969157160 5986 dbSNP
rs995403622 5987 dbSNP
rs1232886865 5994 dbSNP
rs552080559 5999 dbSNP
rs1185411304 6006 dbSNP
rs1036864621 6007 dbSNP
rs570946101 6024 dbSNP
rs912640382 6025 dbSNP
rs1398751050 6037 dbSNP
rs1412065921 6050 dbSNP
rs1010533416 6051 dbSNP
rs551112010 6057 dbSNP
rs1300436340 6061 dbSNP
rs1051154220 6062 dbSNP
rs1173956718 6062 dbSNP
rs1465538956 6063 dbSNP
rs1295394744 6074 dbSNP
rs1356296571 6075 dbSNP
rs1375842037 6084 dbSNP
rs1161431030 6085 dbSNP
rs1277272450 6086 dbSNP
rs868325110 6087 dbSNP
rs1052650463 6089 dbSNP
rs1273602683 6091 dbSNP
rs932659791 6092 dbSNP
rs779580186 6094 dbSNP
rs1441375864 6097 dbSNP
rs1259206207 6102 dbSNP
rs999712946 6102 dbSNP
rs1475295841 6109 dbSNP
rs115094098 6114 dbSNP
rs957638857 6129 dbSNP
rs561789544 6130 dbSNP
rs1046269 6132 dbSNP
rs1425046877 6137 dbSNP
rs202131300 6138 dbSNP
rs1314776267 6150 dbSNP
rs977545742 6153 dbSNP
rs1376307820 6154 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 3'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' caGGGUUCUCGGACUGAAC-ACu 5'
            ||||:||||:   |||| || 
Target 5' gtCCCAGGAGCTGTCCTTGCTGc 3'
 		20 - 42
2 
miRNA  3' caggguucUCGGACUGA-ACAcu 5'
                  ||||||:|| |||  
Target 5' -------aAGCCTGGCTCTGTtc 3'
 		1 - 16
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE15076 Monocyte-derived dendritic cells -0.999 1.4e-2 -1.000 5.0e-1 3 Click to see details
GSE19350 CNS germ cell tumors -0.628 1.4e-2 -0.684 7.1e-3 12 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.376 3.2e-2 -0.094 3.3e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.321 3.7e-2 -0.199 1.4e-1 32 Click to see details
GSE19536 Breast cancer -0.169 4.6e-2 -0.172 4.4e-2 100 Click to see details
GSE19783 ER- ER- breast cancer -0.125 1.4e-1 -0.159 8.1e-2 79 Click to see details
GSE38226 Liver fibrosis 0.243 1.4e-1 0.399 3.7e-2 21 Click to see details
GSE21687 Ependynoma primary tumors 0.122 1.7e-1 0.103 2.1e-1 64 Click to see details
GSE19783 ER+ ER+ breast cancer -0.225 1.7e-1 -0.265 1.3e-1 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.217 1.8e-1 0.212 1.8e-1 20 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.127 2.7e-1 0.092 3.3e-1 25 Click to see details
GSE21032 Prostate cancer -0.036 3.7e-1 -0.013 4.5e-1 83 Click to see details
GSE28260 Renal cortex and medulla -0.098 3.8e-1 -0.225 2.3e-1 13 Click to see details
GSE26953 Aortic valvular endothelial cells 0.059 3.9e-1 -0.048 4.1e-1 24 Click to see details
GSE28544 Breast cancer -0.051 4.1e-1 -0.055 4.0e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.038 4.3e-1 -0.196 1.9e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.421 0 0.334 0.02 42 Click to see details
BLCA 0.575 0.01 0.455 0.03 18 Click to see details
KIRC -0.281 0.01 -0.272 0.01 68 Click to see details
CHOL 0.711 0.02 0.633 0.03 9 Click to see details
LUAD 0.546 0.03 0.559 0.03 12 Click to see details
PRAD -0.231 0.05 -0.133 0.18 50 Click to see details
ESCA 0.494 0.06 0.491 0.06 11 Click to see details
STAD 0.271 0.07 0.259 0.08 32 Click to see details
LUSC 0.196 0.12 0.189 0.13 38 Click to see details
UCEC -0.266 0.14 -0.363 0.06 19 Click to see details
COAD -0.422 0.15 -0.452 0.13 8 Click to see details
KIRP 0.116 0.26 0.070 0.35 32 Click to see details
BRCA 0.067 0.27 0.087 0.22 84 Click to see details
KICH -0.124 0.28 -0.113 0.3 25 Click to see details
CESC 0.634 0.28 0.500 0.33 3 Click to see details
PCPG -0.519 0.33 -0.500 0.33 3 Click to see details
LIHC 0.054 0.36 0.050 0.37 49 Click to see details
THCA 0.043 0.37 0.051 0.35 59 Click to see details
PAAD -0.139 0.43 0.200 0.4 4 Click to see details
PAAD -0.139 0.43 0.200 0.4 4 Click to see details
PAAD -0.139 0.43 0.200 0.4 4 Click to see details
91 hsa-miR-125b-2-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038624 HN1L Jupiter microtubule associated homolog 2 1 1
MIRT038625 KDELC2 KDEL motif containing 2 1 1
MIRT038626 ABHD15 abhydrolase domain containing 15 1 1
MIRT038627 PPP1R12C protein phosphatase 1 regulatory subunit 12C 1 1
MIRT038628 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 1 1
MIRT038629 ASH2L ASH2 like histone lysine methyltransferase complex subunit 1 1
MIRT038630 USP22 ubiquitin specific peptidase 22 1 1
MIRT038631 CSTB cystatin B 1 1
MIRT038632 SYT2 synaptotagmin 2 1 1
MIRT038633 NDUFS7 NADH:ubiquinone oxidoreductase core subunit S7 1 1
MIRT038634 MTA2 metastasis associated 1 family member 2 1 1
MIRT053086 IGF1R insulin like growth factor 1 receptor 3 1
MIRT055788 PLEKHA1 pleckstrin homology domain containing A1 2 12
MIRT061248 AMOTL1 angiomotin like 1 2 10
MIRT061649 BTG2 BTG anti-proliferation factor 2 2 6
MIRT079046 TNRC6C trinucleotide repeat containing 6C 2 4
MIRT084583 BCL2L11 BCL2 like 11 2 8
MIRT093523 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 2
MIRT097383 LHFPL2 LHFPL tetraspan subfamily member 2 2 4
MIRT098030 SOBP sine oculis binding protein homolog 2 2
MIRT186262 TCEB3 elongin A 2 2
MIRT187284 DAZAP2 DAZ associated protein 2 2 10
MIRT361113 LRRC1 leucine rich repeat containing 1 2 2
MIRT443585 FAM84B family with sequence similarity 84 member B 2 2
MIRT452249 TRAM1 translocation associated membrane protein 1 2 2
MIRT476289 GMFB glia maturation factor beta 2 8
MIRT483871 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT484250 ANK1 ankyrin 1 2 2
MIRT499251 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT502270 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 4
MIRT504652 RPL9 ribosomal protein L9 2 6
MIRT505210 UBN2 ubinuclein 2 2 6
MIRT512690 POP1 POP1 homolog, ribonuclease P/MRP subunit 2 2
MIRT517341 ZNF529 zinc finger protein 529 2 4
MIRT518946 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT520866 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521236 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT528324 GIGYF2 GRB10 interacting GYF protein 2 2 2
MIRT533297 USP46 ubiquitin specific peptidase 46 2 2
MIRT541024 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT544034 ERRFI1 ERBB receptor feedback inhibitor 1 2 2
MIRT547037 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556102 MOAP1 modulator of apoptosis 1 2 2
MIRT558320 DR1 down-regulator of transcription 1 2 2
MIRT558520 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT566230 PTMA prothymosin, alpha 2 4
MIRT568437 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT570584 OTUD7B OTU deubiquitinase 7B 2 2
MIRT571384 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572798 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT573864 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT609930 SLC38A1 solute carrier family 38 member 1 2 4
MIRT610437 CSMD2 CUB and Sushi multiple domains 2 2 2
MIRT614407 MURC caveolae associated protein 4 2 2
MIRT618625 GREB1 growth regulation by estrogen in breast cancer 1 2 2
MIRT620605 SAP30 Sin3A associated protein 30 2 2
MIRT635313 FAM179A TOG array regulator of axonemal microtubules 2 2 2
MIRT635918 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638507 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT640597 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT644066 IQCE IQ motif containing E 2 2
MIRT648287 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT653089 SSR3 signal sequence receptor subunit 3 2 2
MIRT654651 PTAFR platelet activating factor receptor 2 2
MIRT658084 FOXR2 forkhead box R2 2 2
MIRT665306 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT665974 SYTL4 synaptotagmin like 4 2 2
MIRT674905 RASSF9 Ras association domain family member 9 2 2
MIRT680085 THAP1 THAP domain containing 1 2 2
MIRT681487 DIP2A disco interacting protein 2 homolog A 2 2
MIRT691243 DFNB59 pejvakin 2 2
MIRT692361 AGTRAP angiotensin II receptor associated protein 2 2
MIRT693034 MB21D1 Mab-21 domain containing 1 2 2
MIRT694478 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT696069 ZNF264 zinc finger protein 264 2 2
MIRT696579 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696759 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 2
MIRT697306 ZNF652 zinc finger protein 652 2 2
MIRT698736 STX12 syntaxin 12 2 2
MIRT701055 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT701197 OTUD3 OTU deubiquitinase 3 2 2
MIRT701334 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT703617 FBXO45 F-box protein 45 2 2
MIRT708893 ZNF780A zinc finger protein 780A 2 2
MIRT711621 DGKH diacylglycerol kinase eta 2 2
MIRT713744 TMEM81 transmembrane protein 81 2 2
MIRT715060 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT719711 CD101 CD101 molecule 2 2
MIRT720293 DLGAP3 DLG associated protein 3 2 2
MIRT722605 CCDC152 coiled-coil domain containing 152 2 2
MIRT724565 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-125b-2 Ascorbate approved 54670067 Microarray Metastatic melanoma cell lines 25202679 2014 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-125b-2 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-125b-2 Methotrexate 126941 NSC740 approved resistant High Colorectal Adenocarcinoma cell line (HT-29)
hsa-mir-125b-2 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-mir-125b-2 Doxorubicin 31703 NSC123127 approved sensitive Low Hepatocellular Carcinoma cell line (Huh-7, HLE, HuH1)
hsa-mir-125b-2 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375)
hsa-mir-125b-2 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-125b-2 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-125b-2 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-125b-2 Vincristine 5978 approved resistant cell line (W1)
hsa-mir-125b-2 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-mir-125b-2 Tamoxifen 2733525 NSC180973 approved resistant tissue (ER-positive breast cancer)
hsa-mir-125b-2 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-125b-2 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-125b-2-3p Platinum 23939 resistant High Ovarian Cancer tissue
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive Low Cervical Cancer tissue
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-miR-125b-2-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-125b-2-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-125b-2-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-125b-2-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-125b-2-3p Cyclophosphamide + Doxorubicin + Vincristine + Prednisone + Rituximab resistant High Diffuse Large B-Cell Lymphoma cell line (SU-DHL-2)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-125b-2-3p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (HCT8, HCT-116)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-125b-2-3p Antiepileptic Drug sensitive High Pediatric Epilepsy tissue
hsa-miR-125b-2-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-125b-2-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-125b-2-3p 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-125b-2-3p Ethanol+Tamoxifen resistant cell line (LY2)
hsa-miR-125b-2-3p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-125b-2-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-125b-2-3p Oxaliplatin 6857599 NSC266046 approved resistant cell line (IGROV-1)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-125b-2-3p Paclitaxel 36314 NSC125973 approved resistant cell line (PC3PR70)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-125b-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-125b-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-125b-2-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-125b-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)

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