miRTarBase - #MIRT041074


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pre-miRNA Information
pre-miRNA hsa-mir-504   
Genomic Coordinates chrX: 138667711 - 138667793
Synonyms MIRN504, hsa-mir-504, MIR504
Description Homo sapiens miR-504 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-504-5p
Sequence 13| AGACCCUGGUCUGCACUCUAUC |34
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1297440872 6 dbSNP
rs1429220261 12 dbSNP
rs745623382 14 dbSNP
rs770027520 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF814   
Synonyms -
Description zinc finger protein 814
Transcript NM_001144989   
Expression
Putative miRNA Targets on ZNF814
3'UTR of ZNF814
(miRNA target sites are highlighted)		 
>ZNF814|NM_001144989|3'UTR
   1 GTGTGAGGATTGTCAGAAAGTTTTTAGCAAGAAGGACCACCTCATTGCACACCAGAGAGTTCACACTGGAGAAAGGCCAT
  81 ATGAATGCAGTGATTGTGGGAAGTCATCTACCCACAGCTCTGCATTCTGTGTTCATAAGAGAGTTCACACTGGTCACACC
 161 ACCTTATGAGTGCAGTGAATGTGGGAAATCCTTTGCTGAAACTTTCAGTCTCATTAAACACAGGAGAGTTCACACTGGAG
 241 TAAGGTCTTGTGATTGCAGCAAATGTGGGAAAAAAGTTACCTGAAGGTCTTTTCTCCTTGAATATCAGAGAGTTCACACT
 321 AGACAAATAAAATACATTTGGGCAATTTTGTAGCCACACCTCTTTGCTCCTTCAAGATCAGAGTTAACACTGGATCAGGG
 401 CCTTACCAGTGTGACATGTGAGATATTTATGTAGAAATCTAGCTTCATAACACACAGGAGACTTCCCACTGCAGAAATGC
 481 CTTTTGAATGTAATGAATGCAAGAAAGCCTTCAGCCTTTTTATTGGAGCCTCAAACATTGACATGAGAAAAACACCATAG
 561 ATGTATATGGAATGTTATTTCTTTTTCAATGTAACCCTTTGAGAGTGCCACCTACCTAGATTGAATGTCATTTATTGAGC
 641 ATCTGCAAAAGTTCCAAGTGTGTGGCAGCTACAGTGCATTTTTCACTATACCCAGGTACCTTGCTAGATTTTTTTTGAGA
 721 CAGGTTGTCACTGTGTCGCTCAGGATGGCGTGCAGTGGTGTGTTCACATTTCACTGCACCCTTGATCTGGGCTTAAGTGA
 801 TTCTGTTGCCTCGGCCTCCTGAGTAGCTGAAACCACAGGCATGCACTACCATGCTCCACTAATTTTTTTAAGTTTTGGAG
 881 AGACAGGGTCTCACCATGTTGCCCAGGCTGGTCTTAAACTCCTGGCTCAAGCGATCCTTCCACCTTGGCCTCCAAACATG
 961 CTGGGATTACAGGTGTGAGTTACTGTGCCTGGCCTTTTTTTTTTTTTTTTTTAACTTTTAATTTCTGATCGAGTCACAGA
1041 AGGATTTGTTGAGTAGCTTCAGCACTTCTTCCTTTGTCATTTTTTTCTGTCTGATAAGTCATGCCATGGACGTTACCCAT
1121 TTTTATCCCAGAGGCCTCTTACGTTGACTTGAAAAGACGGACTATGTCTTTCAGAGATCTTGTGGGTATCACATCAATCT
1201 TGACAAATTTTCTACCCTCCAAGTCATGATCCTAAGAACAGCTTGCCTCCCATTTCTCCGGTTTGTGCTATTATGAAGGC
1281 CTTATTGTTTCAGCCTTCTTCAATCTTGAGGGTTGTTGTCACTGTATGGGTGGTTCAGAAATAAGTAGGTCCTGTTACTA
1361 TGAAGGGGGTCACAGCTTTTGTTGGCATAGCTAAACTTTGTGGCTCATGGAACAGTATGAATGCAGAATGTAGCTTTCTC
1441 CACTTGTGGACTGCTTTGCATAGCTGCCAGAGGCCTCCAGAGAAGACCTTCAGGGCTTTGTGGTCTTTATCTGTAGCACG
1521 GATACTAAAATTTGTGGGTTCATAGGTCAGCTGGATACAGGGCATTTTTTGTGACAATTTCTGGCATTTTTTGAACAAGA
1601 CAAAATTCTTTTACGAGGTATATTGCATTGTACTTGGTACGGCTGAGGGAAGTCTGTTGCCCAGCTCTTGCAATGCAGAC
1681 ACATGCCCTGATATCCAGAATTCTGTAGGATAACATCACAGATTGTAATGCTATCAGGTGAAATTATAATTTTATAGAAT
1761 TACTTTATTTATAGGCAGTGGAGGAGACAGAATAATGTAACTGCAACTCATGTCTTTTTTTTCTTTTTTTTTCTTTTTTT
1841 TTGAGGCAGAGCCTCACCCTGTTGCCCAGGCTGGAGTGCAGTGGCATAATCTTGGCTCACGGCAACCTCTGCCTCCCAGG
1921 TTCAAACGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCACCACACCCAGCTAATTTTTGTAT
2001 TTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCTGGCCTCAGCCTC
2081 CCAAAGTCCTGGGATTACAGGTGAGCCACCACGTGCAGCGTAATGCATGTCTTTTAAAAGGGCATCCACAATGATCCAGT
2161 CACTACGTATATGATGAATATGCAGATACAGGAATTATCAGGACTTCCATAATGATGAATATTGTATTGTTGAGGCCATT
2241 GTCAGAGGAAATAATCTAAAGGTTTTGTGAATTCCTGTACTCATTCTGGGCTGTTCTCCTCAAGGTCATTCCTGCATTAA
2321 CAGGAGGAAGATGATAGGGAGAAGGGAGATCTCAGTTCAGTGATGTGGCCTTTGTGACCAGCCAGCCACTTAATCAGGTG
2401 GAAATGGCCTTAGTGCCACATCAATATTTGCTACCGTGGAGGCTAGTTTTCCCACTTAGGGCATGAGAAGAATTGGTGTA
2481 GTCAGTATAGAGTTGCCAAACCTGTTTTCCAAAAATAATGGTAAATCTATATTTTTCTTTTGAACTGCATTTTTTTAATT
2561 ATTATTATTATTTATTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGATGGAGTGCAGTGGCACGATCTCGGCTCAC
2641 TGCAAGCTCTGCCTCCTGGGTTCACACCATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCCCGCCACCA
2721 TACCCAGCTAATTTTTTGTATCTTTACTAGAGATGGGGTTTCACCATGTTAACTAGGATGGTCTCGATCTCCTGACCTCG
2801 TGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCGTGCCCAACCTTTTTTTTTTTTTTTTG
2881 AGACAGAGTCTCACTGTCAGCCAGGCTGGAGTGCAGTGGCATGACCTTGGCTCATTGCAACCTCTACCTCCTAGGTTCAA
2961 GCAATTCTCCTGGCTCAGCCTCCCATGTAGGTGGGACTGGAAGCATGTGCCACCATGCCCGGCCAAGTTTTGTATTTTTA
3041 GTAGAGACGGAGTTTTGCCATGTTGGCCAGGCTGATCTTGGACTCCTGACCTCAGGTGATATGCCTGCCTCAGCCTCCCA
3121 GAGTGGTGGGAATACAGGTGTGAGCCACTGCTGCCAGTCTGAAGTATATTTTAAAGCTGTGATGAGTTATAAATGACATT
3201 CAGTAAGCTATGCATATTTAAGCTGTAGCATGTGATAAATCTTGAGTTTCATATAATCCCATGAAACCATTAACATAGTC
3281 ACAATAATGAACTTAACACCTTTATATTTACTTGGAACCTTTTTATAAAGGCTTTCTTTCTGTTCTCCAGACAACCAATG
3361 ATTTACTTTGCTGTACAGTAGAGTACTTTCCATTTTCTGGAATGTTAGATGAGTGATGTAATAAAGTGTTTCCTCTTATA
3441 ATC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuAUCUCACGUCUGGUCCCAGa 5'
            |:|||   ||| ||||||| 
Target 5' ttTGGAG---AGA-CAGGGTCt 3'
 874 - 891 156.00 -18.40
2 
miRNA  3' cuaUCUCA--CGU---CUGGUCCCAGa 5'
             |||||   ||   ||:||||| | 
Target 5' atcAGAGTTAACACTGGATCAGGGCCt 3'
 377 - 403 129.00 -17.50
3 
miRNA  3' cuaucucACGUCUGGUCCCAGa 5'
                 |||   ||||| || 
Target 5' caacctcTGCCTCCCAGGTTCa 3'
 1903 - 1924 119.00 -9.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN22842627 15 COSMIC
COSN30515085 31 COSMIC
COSN30465305 34 COSMIC
COSN31493912 58 COSMIC
COSN30150572 71 COSMIC
COSN28861056 77 COSMIC
COSN31500159 94 COSMIC
COSN9852891 94 COSMIC
COSN30524707 109 COSMIC
COSN30528885 113 COSMIC
COSN30144686 122 COSMIC
COSN30122449 134 COSMIC
COSN18917768 179 COSMIC
COSN30710751 210 COSMIC
COSN32073983 219 COSMIC
COSN31565800 226 COSMIC
COSN15344601 231 COSMIC
COSN30483270 231 COSMIC
COSN30623559 236 COSMIC
COSN19625462 269 COSMIC
COSN30506232 270 COSMIC
COSN30154222 283 COSMIC
COSN30503392 289 COSMIC
COSN31558901 310 COSMIC
COSN21345525 503 COSMIC
COSN23856745 772 COSMIC
COSN20116166 994 COSMIC
COSN32096342 1190 COSMIC
COSN24694940 1587 COSMIC
COSN24051423 1721 COSMIC
COSN19490202 1760 COSMIC
COSN14956773 2129 COSMIC
COSN22463662 2273 COSMIC
COSN24895996 2438 COSMIC
COSN5439866 2531 COSMIC
COSN21224827 2611 COSMIC
COSN7451114 2628 COSMIC
COSN32160516 3161 COSMIC
COSN25031717 3185 COSMIC
COSN22515268 3297 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1455969208 1 dbSNP
rs768834125 2 dbSNP
rs749536496 3 dbSNP
rs1472058683 6 dbSNP
rs1249353251 7 dbSNP
rs1184006254 9 dbSNP
rs1052634637 14 dbSNP
rs780053139 15 dbSNP
rs1266539041 17 dbSNP
rs761697430 18 dbSNP
rs756192498 19 dbSNP
rs1275109137 20 dbSNP
rs750583122 25 dbSNP
rs1328683672 26 dbSNP
rs781541818 27 dbSNP
rs1230582787 28 dbSNP
rs1336700061 29 dbSNP
rs144091647 30 dbSNP
rs1323538495 31 dbSNP
rs1215379077 35 dbSNP
rs1041784573 37 dbSNP
rs751842928 39 dbSNP
rs1392342291 40 dbSNP
rs946049315 41 dbSNP
rs1456388533 42 dbSNP
rs764587286 45 dbSNP
rs1161140449 46 dbSNP
rs1470410338 48 dbSNP
rs1376828955 50 dbSNP
rs1219162663 52 dbSNP
rs760789890 56 dbSNP
rs1275336377 60 dbSNP
rs1190366113 62 dbSNP
rs1213368664 66 dbSNP
rs541447664 74 dbSNP
rs1474937080 75 dbSNP
rs1165831306 76 dbSNP
rs987456968 77 dbSNP
rs932277846 79 dbSNP
rs1047047641 81 dbSNP
rs1339299573 82 dbSNP
rs752922935 86 dbSNP
rs973633287 89 dbSNP
rs1037817856 92 dbSNP
rs1340060032 94 dbSNP
rs149535034 96 dbSNP
rs907932399 102 dbSNP
rs1357312096 103 dbSNP
rs1219984814 105 dbSNP
rs562254756 106 dbSNP
rs983138212 111 dbSNP
rs1331257807 112 dbSNP
rs1210547484 120 dbSNP
rs1436262147 127 dbSNP
rs1262304865 134 dbSNP
rs1351624904 135 dbSNP
rs970378644 143 dbSNP
rs1446260955 144 dbSNP
rs1310458230 146 dbSNP
rs1428400352 148 dbSNP
rs1368110224 151 dbSNP
rs1169177557 153 dbSNP
rs184366306 161 dbSNP
rs1024624328 170 dbSNP
rs1414656032 171 dbSNP
rs573884349 173 dbSNP
rs1415056595 174 dbSNP
rs922586587 177 dbSNP
rs192439514 181 dbSNP
rs977068377 190 dbSNP
rs1384848806 199 dbSNP
rs1380947628 208 dbSNP
rs963710927 213 dbSNP
rs1426890179 221 dbSNP
rs767708293 222 dbSNP
rs36043277 225 dbSNP
rs759829802 230 dbSNP
rs187968320 235 dbSNP
rs1480026762 239 dbSNP
rs1291623624 240 dbSNP
rs4801239 269 dbSNP
rs1000707090 270 dbSNP
rs112781330 270 dbSNP
rs1184179748 270 dbSNP
rs58878435 279 dbSNP
rs1261298807 280 dbSNP
rs1349867404 288 dbSNP
rs1203244641 294 dbSNP
rs1250790617 302 dbSNP
rs1280490150 304 dbSNP
rs1485849156 306 dbSNP
rs957794622 307 dbSNP
rs1186823936 313 dbSNP
rs553701782 313 dbSNP
rs1314138201 317 dbSNP
rs1182257159 332 dbSNP
rs1276840649 336 dbSNP
rs1362642198 338 dbSNP
rs1219000927 339 dbSNP
rs1452275560 344 dbSNP
rs534647464 354 dbSNP
rs1174774294 357 dbSNP
rs1403391845 360 dbSNP
rs1330163167 373 dbSNP
rs1031132322 374 dbSNP
rs1311344205 375 dbSNP
rs1352547581 376 dbSNP
rs1290624820 380 dbSNP
rs1041838344 382 dbSNP
rs1408499913 384 dbSNP
rs1306393073 398 dbSNP
rs1350461892 407 dbSNP
rs763489459 409 dbSNP
rs1236820062 418 dbSNP
rs946144053 418 dbSNP
rs890528291 426 dbSNP
rs773685946 429 dbSNP
rs931970324 437 dbSNP
rs57919430 443 dbSNP
rs1038317376 450 dbSNP
rs942228192 451 dbSNP
rs746522603 453 dbSNP
rs1201696562 457 dbSNP
rs1468982711 457 dbSNP
rs1396186938 458 dbSNP
rs941977614 458 dbSNP
rs1412371521 461 dbSNP
rs548714154 462 dbSNP
rs535130166 466 dbSNP
rs34097701 468 dbSNP
rs139076093 472 dbSNP
rs1394461605 477 dbSNP
rs549925338 481 dbSNP
rs75978493 490 dbSNP
rs146347779 494 dbSNP
rs1233382131 498 dbSNP
rs929863415 501 dbSNP
rs1343975990 523 dbSNP
rs959263878 527 dbSNP
rs113766444 528 dbSNP
rs1479400043 529 dbSNP
rs142466421 537 dbSNP
rs1254250432 538 dbSNP
rs1468430834 543 dbSNP
rs1192242979 552 dbSNP
rs1429443131 556 dbSNP
rs1170060445 558 dbSNP
rs1235808888 559 dbSNP
rs942640124 562 dbSNP
rs1203218308 563 dbSNP
rs911108000 566 dbSNP
rs192080069 574 dbSNP
rs1393752096 581 dbSNP
rs74637472 589 dbSNP
rs535904474 591 dbSNP
rs115133608 593 dbSNP
rs1025545673 607 dbSNP
rs563495941 609 dbSNP
rs1380636720 610 dbSNP
rs895409144 611 dbSNP
rs996197531 615 dbSNP
rs1212403407 628 dbSNP
rs900476060 629 dbSNP
rs1037967618 631 dbSNP
rs768376922 635 dbSNP
rs1250413635 640 dbSNP
rs188554598 644 dbSNP
rs1186283491 654 dbSNP
rs757090196 661 dbSNP
rs1425790247 664 dbSNP
rs1451409857 666 dbSNP
rs1165861733 670 dbSNP
rs942303385 675 dbSNP
rs749291938 686 dbSNP
rs1162762990 695 dbSNP
rs1322271697 699 dbSNP
rs1346877896 701 dbSNP
rs1454179162 704 dbSNP
rs777755371 707 dbSNP
rs1359534434 709 dbSNP
rs1230902471 717 dbSNP
rs1397442295 717 dbSNP
rs886433545 717 dbSNP
rs1270642568 719 dbSNP
rs1047838979 721 dbSNP
rs138370027 722 dbSNP
rs1484416824 723 dbSNP
rs1047922096 724 dbSNP
rs1257045852 731 dbSNP
rs558071867 737 dbSNP
rs775902056 737 dbSNP
rs868117818 738 dbSNP
rs9630883 739 dbSNP
rs1411674648 745 dbSNP
rs76156236 749 dbSNP
rs539480365 750 dbSNP
rs911137615 757 dbSNP
rs535187845 758 dbSNP
rs924970343 762 dbSNP
rs936384483 765 dbSNP
rs923589755 772 dbSNP
rs1305447190 777 dbSNP
rs1207214304 782 dbSNP
rs1212022792 784 dbSNP
rs554599842 785 dbSNP
rs1484815698 790 dbSNP
rs1266419078 792 dbSNP
rs970900964 794 dbSNP
rs1224366699 795 dbSNP
rs1233546035 796 dbSNP
rs917641928 803 dbSNP
rs1176591566 812 dbSNP
rs1405676941 813 dbSNP
rs1455468148 818 dbSNP
rs1174029074 824 dbSNP
rs966658006 831 dbSNP
rs571146341 833 dbSNP
rs1008074598 842 dbSNP
rs1312239711 843 dbSNP
rs1354647332 844 dbSNP
rs1244669775 845 dbSNP
rs955154596 846 dbSNP
rs1235569031 854 dbSNP
rs868851383 856 dbSNP
rs755150068 857 dbSNP
rs1230929337 872 dbSNP
rs1346110062 872 dbSNP
rs1273938552 882 dbSNP
rs900570033 886 dbSNP
rs1202511449 887 dbSNP
rs1231174872 887 dbSNP
rs1006468268 896 dbSNP
rs1194125269 905 dbSNP
rs1383892993 910 dbSNP
rs1169334802 911 dbSNP
rs1293917144 919 dbSNP
rs950774386 926 dbSNP
rs1408928757 928 dbSNP
rs1026753286 929 dbSNP
rs1038128915 932 dbSNP
rs1006218140 933 dbSNP
rs1369294339 934 dbSNP
rs150460761 941 dbSNP
rs1338979439 942 dbSNP
rs1162998628 953 dbSNP
rs1450241564 958 dbSNP
rs1212960727 964 dbSNP
rs1275145185 971 dbSNP
rs183231892 972 dbSNP
rs1252269377 975 dbSNP
rs1467012755 984 dbSNP
rs886725160 985 dbSNP
rs1006715816 987 dbSNP
rs1268443820 989 dbSNP
rs1184354583 992 dbSNP
rs76367289 993 dbSNP
rs80162712 994 dbSNP
rs1487778237 995 dbSNP
rs1291762319 1011 dbSNP
rs1221081551 1012 dbSNP
rs10676349 1013 dbSNP
rs1224519704 1013 dbSNP
rs1392906047 1013 dbSNP
rs1408191597 1013 dbSNP
rs775137712 1013 dbSNP
rs889606895 1013 dbSNP
rs1055024879 1015 dbSNP
rs555827896 1016 dbSNP
rs1354169251 1017 dbSNP
rs1206761553 1020 dbSNP
rs1284716318 1021 dbSNP
rs1224725528 1023 dbSNP
rs1214050121 1026 dbSNP
rs936566281 1027 dbSNP
rs1301694476 1030 dbSNP
rs1475282727 1031 dbSNP
rs1186602787 1033 dbSNP
rs1414936357 1036 dbSNP
rs80215917 1037 dbSNP
rs1388361240 1042 dbSNP
rs1384744516 1043 dbSNP
rs570956040 1046 dbSNP
rs1042456067 1051 dbSNP
rs548073254 1067 dbSNP
rs1430350773 1068 dbSNP
rs949557414 1075 dbSNP
rs1166830262 1076 dbSNP
rs1291526578 1080 dbSNP
rs1337559154 1084 dbSNP
rs1241136006 1086 dbSNP
rs1280036536 1087 dbSNP
rs1349749875 1087 dbSNP
rs1461640297 1093 dbSNP
rs896629930 1111 dbSNP
rs1055286750 1112 dbSNP
rs1378474210 1119 dbSNP
rs867818718 1128 dbSNP
rs990560987 1129 dbSNP
rs959558964 1131 dbSNP
rs1201440491 1136 dbSNP
rs74909970 1142 dbSNP
rs909364801 1142 dbSNP
rs1183220657 1143 dbSNP
rs925055118 1143 dbSNP
rs1468982228 1158 dbSNP
rs766778999 1158 dbSNP
rs1183460451 1159 dbSNP
rs1484334795 1164 dbSNP
rs537878115 1166 dbSNP
rs1398779555 1172 dbSNP
rs763288145 1174 dbSNP
rs1329527710 1175 dbSNP
rs997927004 1177 dbSNP
rs1237786315 1179 dbSNP
rs966066775 1182 dbSNP
rs1193624038 1186 dbSNP
rs191210055 1192 dbSNP
rs913825764 1201 dbSNP
rs1017675774 1206 dbSNP
rs548574873 1207 dbSNP
rs1007585166 1208 dbSNP
rs1340929637 1213 dbSNP
rs986695585 1214 dbSNP
rs187678105 1220 dbSNP
rs1234971830 1227 dbSNP
rs563004490 1230 dbSNP
rs1028602178 1231 dbSNP
rs1321084019 1232 dbSNP
rs1000675664 1233 dbSNP
rs1174282899 1234 dbSNP
rs902432083 1247 dbSNP
rs1462620995 1253 dbSNP
rs1167414357 1256 dbSNP
rs1042306235 1258 dbSNP
rs551338678 1259 dbSNP
rs749462723 1260 dbSNP
rs545970421 1261 dbSNP
rs965196096 1268 dbSNP
rs182270203 1274 dbSNP
rs1439868605 1281 dbSNP
rs1006184775 1282 dbSNP
rs886402712 1283 dbSNP
rs773773705 1285 dbSNP
rs367769846 1288 dbSNP
rs896717805 1291 dbSNP
rs1055741865 1295 dbSNP
rs937764402 1296 dbSNP
rs938187080 1297 dbSNP
rs765709771 1298 dbSNP
rs1467707284 1302 dbSNP
rs760119481 1303 dbSNP
rs929450735 1307 dbSNP
rs945044878 1308 dbSNP
rs190756738 1311 dbSNP
rs986448934 1336 dbSNP
rs1421350069 1337 dbSNP
rs1462973224 1345 dbSNP
rs933917640 1347 dbSNP
rs572209677 1349 dbSNP
rs1017540236 1358 dbSNP
rs1428968379 1360 dbSNP
rs554962631 1361 dbSNP
rs1461053349 1374 dbSNP
rs186190562 1376 dbSNP
rs986069970 1387 dbSNP
rs140530352 1390 dbSNP
rs1473846433 1397 dbSNP
rs1295352544 1407 dbSNP
rs1339028794 1408 dbSNP
rs1410475013 1411 dbSNP
rs975685100 1413 dbSNP
rs1436656404 1417 dbSNP
rs1256265546 1422 dbSNP
rs962541259 1426 dbSNP
rs555889357 1429 dbSNP
rs984816759 1430 dbSNP
rs1218814899 1435 dbSNP
rs1262098982 1438 dbSNP
rs902336645 1440 dbSNP
rs1021319375 1441 dbSNP
rs950790046 1444 dbSNP
rs1228827807 1449 dbSNP
rs745560193 1451 dbSNP
rs570346066 1459 dbSNP
rs181966466 1460 dbSNP
rs937628471 1471 dbSNP
rs554039856 1481 dbSNP
rs1454524108 1483 dbSNP
rs887527127 1487 dbSNP
rs896766182 1493 dbSNP
rs1033903137 1510 dbSNP
rs28637480 1519 dbSNP
rs1417083284 1520 dbSNP
rs903999898 1521 dbSNP
rs1355435401 1525 dbSNP
rs1226085700 1538 dbSNP
rs73068574 1542 dbSNP
rs1308550487 1552 dbSNP
rs191804423 1555 dbSNP
rs919418138 1557 dbSNP
rs1486524562 1565 dbSNP
rs749094298 1568 dbSNP
rs139752283 1571 dbSNP
rs944978094 1573 dbSNP
rs568798953 1575 dbSNP
rs892203752 1576 dbSNP
rs1050789743 1579 dbSNP
rs1410276725 1581 dbSNP
rs910774364 1583 dbSNP
rs142482429 1585 dbSNP
rs1321630191 1587 dbSNP
rs1436944927 1591 dbSNP
rs1313911268 1593 dbSNP
rs1359050076 1593 dbSNP
rs1459217815 1594 dbSNP
rs1406247629 1596 dbSNP
rs1299325714 1605 dbSNP
rs1158443156 1607 dbSNP
rs1445480302 1609 dbSNP
rs186797968 1615 dbSNP
rs1349654453 1618 dbSNP
rs1039584823 1620 dbSNP
rs941210362 1622 dbSNP
rs977520672 1625 dbSNP
rs755939115 1628 dbSNP
rs966969800 1629 dbSNP
rs181103139 1630 dbSNP
rs909688291 1633 dbSNP
rs1020806477 1638 dbSNP
rs141417065 1640 dbSNP
rs950841359 1641 dbSNP
rs548807472 1644 dbSNP
rs1174599705 1645 dbSNP
rs11084521 1648 dbSNP
rs1442367853 1649 dbSNP
rs1001907068 1663 dbSNP
rs1242206896 1664 dbSNP
rs1328729860 1673 dbSNP
rs887432373 1674 dbSNP
rs560010767 1680 dbSNP
rs73567720 1682 dbSNP
rs118116015 1683 dbSNP
rs1307441033 1688 dbSNP
rs897545713 1690 dbSNP
rs527459566 1694 dbSNP
rs1204428309 1710 dbSNP
rs1256258641 1713 dbSNP
rs944842295 1723 dbSNP
rs1357002912 1726 dbSNP
rs781369155 1732 dbSNP
rs1246409511 1735 dbSNP
rs1477234408 1738 dbSNP
rs910844615 1742 dbSNP
rs1002429064 1746 dbSNP
rs1420799401 1752 dbSNP
rs1382306268 1755 dbSNP
rs936033725 1757 dbSNP
rs968694131 1758 dbSNP
rs1298519845 1763 dbSNP
rs1167846764 1766 dbSNP
rs775068910 1768 dbSNP
rs977803057 1770 dbSNP
rs1322458462 1772 dbSNP
rs1347807022 1773 dbSNP
rs1343758282 1779 dbSNP
rs967503745 1786 dbSNP
rs917290104 1792 dbSNP
rs1022496961 1794 dbSNP
rs546553414 1797 dbSNP
rs892256018 1801 dbSNP
rs991997973 1811 dbSNP
rs146431340 1812 dbSNP
rs1164918979 1819 dbSNP
rs1291136640 1821 dbSNP
rs1002106538 1823 dbSNP
rs1033627715 1823 dbSNP
rs951824788 1823 dbSNP
rs1243071972 1827 dbSNP
rs1027341181 1828 dbSNP
rs1192123468 1832 dbSNP
rs1420729281 1832 dbSNP
rs1318654726 1833 dbSNP
rs1411127221 1833 dbSNP
rs201345616 1833 dbSNP
rs746429130 1833 dbSNP
rs993541025 1833 dbSNP
rs1040487639 1836 dbSNP
rs575637844 1837 dbSNP
rs78091031 1842 dbSNP
rs143974207 1843 dbSNP
rs200424958 1843 dbSNP
rs369219010 1843 dbSNP
rs559646063 1843 dbSNP
rs1354443123 1844 dbSNP
rs1384075627 1844 dbSNP
rs1225690136 1845 dbSNP
rs899475579 1851 dbSNP
rs1040040074 1855 dbSNP
rs7250728 1856 dbSNP
rs926171126 1859 dbSNP
rs909800757 1861 dbSNP
rs1470919616 1863 dbSNP
rs946001179 1867 dbSNP
rs1379358527 1876 dbSNP
rs375856922 1884 dbSNP
rs546121515 1885 dbSNP
rs960556236 1885 dbSNP
rs929776083 1889 dbSNP
rs919343331 1891 dbSNP
rs1229289898 1896 dbSNP
rs1220170099 1899 dbSNP
rs144473991 1900 dbSNP
rs961001307 1901 dbSNP
rs1353309703 1902 dbSNP
rs1275474259 1906 dbSNP
rs1230839922 1910 dbSNP
rs1238379366 1915 dbSNP
rs1375798727 1920 dbSNP
rs1360187970 1926 dbSNP
rs926670929 1927 dbSNP
rs1200386424 1932 dbSNP
rs981164761 1935 dbSNP
rs968370551 1936 dbSNP
rs1022548600 1938 dbSNP
rs534162727 1941 dbSNP
rs1424596041 1947 dbSNP
rs1437463942 1948 dbSNP
rs1364351852 1949 dbSNP
rs1168709787 1950 dbSNP
rs1027951008 1962 dbSNP
rs1411264516 1965 dbSNP
rs1417009650 1966 dbSNP
rs1170731517 1968 dbSNP
rs1167103889 1969 dbSNP
rs1478196406 1978 dbSNP
rs1270797046 1979 dbSNP
rs993180584 1983 dbSNP
rs1332163994 1989 dbSNP
rs575076813 1990 dbSNP
rs1376375588 2005 dbSNP
rs988317175 2005 dbSNP
rs555347282 2008 dbSNP
rs766580940 2011 dbSNP
rs1254742955 2015 dbSNP
rs1342132446 2016 dbSNP
rs1198674695 2017 dbSNP
rs1029437103 2018 dbSNP
rs962007999 2021 dbSNP
rs1456127370 2024 dbSNP
rs1018678877 2025 dbSNP
rs1008584292 2030 dbSNP
rs888841905 2031 dbSNP
rs1029131740 2033 dbSNP
rs1374684715 2037 dbSNP
rs189672990 2044 dbSNP
rs202022320 2045 dbSNP
rs1464192861 2047 dbSNP
rs1207446605 2050 dbSNP
rs899567829 2053 dbSNP
rs1328151056 2059 dbSNP
rs1017978622 2064 dbSNP
rs904778714 2065 dbSNP
rs1386529762 2070 dbSNP
rs1272644202 2071 dbSNP
rs1005621601 2072 dbSNP
rs576879084 2073 dbSNP
rs1219793838 2074 dbSNP
rs946101157 2075 dbSNP
rs1347502777 2078 dbSNP
rs1215075020 2082 dbSNP
rs1281792981 2084 dbSNP
rs1265634843 2090 dbSNP
rs569282403 2093 dbSNP
rs1046924127 2112 dbSNP
rs1207792797 2112 dbSNP
rs929828316 2113 dbSNP
rs7249451 2115 dbSNP
rs927333372 2119 dbSNP
rs1057352488 2120 dbSNP
rs1369226936 2126 dbSNP
rs1457608363 2127 dbSNP
rs539143045 2131 dbSNP
rs1401055649 2132 dbSNP
rs566876993 2139 dbSNP
rs1339147615 2144 dbSNP
rs1234549231 2146 dbSNP
rs758765084 2147 dbSNP
rs750743715 2151 dbSNP
rs1242167222 2159 dbSNP
rs765687506 2163 dbSNP
rs980831225 2166 dbSNP
rs1215685534 2167 dbSNP
rs1480058012 2169 dbSNP
rs1412695432 2174 dbSNP
rs1018585072 2176 dbSNP
rs987069645 2177 dbSNP
rs1179019118 2179 dbSNP
rs149719477 2186 dbSNP
rs1423391677 2189 dbSNP
rs75729684 2191 dbSNP
rs1232382656 2200 dbSNP
rs915500035 2202 dbSNP
rs988369358 2209 dbSNP
rs1211022668 2213 dbSNP
rs1302848641 2214 dbSNP
rs1450831680 2214 dbSNP
rs956872313 2215 dbSNP
rs1029865650 2220 dbSNP
rs1377801632 2220 dbSNP
rs561500755 2224 dbSNP
rs1462849044 2228 dbSNP
rs1354016713 2232 dbSNP
rs1261625239 2233 dbSNP
rs1283646113 2234 dbSNP
rs1223330410 2237 dbSNP
rs1349886654 2239 dbSNP
rs1028662007 2243 dbSNP
rs765875261 2245 dbSNP
rs977321954 2247 dbSNP
rs1000411453 2255 dbSNP
rs1180233365 2261 dbSNP
rs904684531 2275 dbSNP
rs1440575627 2277 dbSNP
rs1290684128 2278 dbSNP
rs1020561145 2282 dbSNP
rs180832666 2286 dbSNP
rs1416582253 2289 dbSNP
rs754269004 2293 dbSNP
rs1297135711 2298 dbSNP
rs1332826239 2299 dbSNP
rs1377115692 2302 dbSNP
rs1448264943 2302 dbSNP
rs1445592252 2305 dbSNP
rs767188519 2312 dbSNP
rs1334434397 2315 dbSNP
rs1300467327 2322 dbSNP
rs1310399520 2326 dbSNP
rs896045435 2327 dbSNP
rs1005219788 2330 dbSNP
rs888088049 2332 dbSNP
rs1057165351 2335 dbSNP
rs7249185 2337 dbSNP
rs994072470 2344 dbSNP
rs1192175091 2349 dbSNP
rs905948232 2351 dbSNP
rs1407292952 2369 dbSNP
rs1048954890 2374 dbSNP
rs1172116745 2380 dbSNP
rs1400390390 2382 dbSNP
rs1464703766 2383 dbSNP
rs1182559205 2391 dbSNP
rs930527712 2398 dbSNP
rs1436884584 2402 dbSNP
rs1296532017 2407 dbSNP
rs1274050994 2408 dbSNP
rs1446646039 2409 dbSNP
rs1278839794 2414 dbSNP
rs1241593179 2417 dbSNP
rs920404784 2418 dbSNP
rs562526944 2421 dbSNP
rs940617513 2422 dbSNP
rs1057006507 2424 dbSNP
rs1214223662 2426 dbSNP
rs911777988 2427 dbSNP
rs1246499338 2432 dbSNP
rs535722703 2433 dbSNP
rs937166149 2434 dbSNP
rs576758303 2435 dbSNP
rs953048336 2436 dbSNP
rs1305650767 2437 dbSNP
rs1322570252 2452 dbSNP
rs1045517942 2460 dbSNP
rs1401674525 2461 dbSNP
rs1339805056 2463 dbSNP
rs1399432889 2470 dbSNP
rs1268510184 2480 dbSNP
rs1028735648 2488 dbSNP
rs1229104183 2493 dbSNP
rs59708331 2496 dbSNP
rs1357717677 2510 dbSNP
rs1219305562 2518 dbSNP
rs915217337 2521 dbSNP
rs1020889258 2526 dbSNP
rs1312371507 2527 dbSNP
rs988127318 2529 dbSNP
rs773016260 2530 dbSNP
rs568256035 2533 dbSNP
rs922836641 2545 dbSNP
rs188401331 2546 dbSNP
rs748165716 2548 dbSNP
rs1421255245 2549 dbSNP
rs184910956 2550 dbSNP
rs192641595 2555 dbSNP
rs80316665 2556 dbSNP
rs1048497749 2557 dbSNP
rs905854748 2557 dbSNP
rs996014597 2558 dbSNP
rs1165552608 2559 dbSNP
rs1426696606 2561 dbSNP
rs764953226 2564 dbSNP
rs575979075 2568 dbSNP
rs1383477904 2570 dbSNP
rs952449624 2571 dbSNP
rs1203895678 2573 dbSNP
rs1353535098 2573 dbSNP
rs563308691 2573 dbSNP
rs897210615 2573 dbSNP
rs1183172932 2578 dbSNP
rs1281420101 2580 dbSNP
rs1025285118 2581 dbSNP
rs559180398 2583 dbSNP
rs538688951 2584 dbSNP
rs566579781 2590 dbSNP
rs1185196782 2595 dbSNP
rs1417700012 2597 dbSNP
rs1485821995 2599 dbSNP
rs1174227127 2616 dbSNP
rs57539547 2617 dbSNP
rs531625415 2627 dbSNP
rs1360899173 2628 dbSNP
rs868089166 2634 dbSNP
rs978425326 2641 dbSNP
rs1310354356 2642 dbSNP
rs1244732692 2651 dbSNP
rs1045168592 2668 dbSNP
rs1277087185 2672 dbSNP
rs1346364113 2678 dbSNP
rs968884860 2688 dbSNP
rs1260718311 2691 dbSNP
rs1297427124 2700 dbSNP
rs562763643 2701 dbSNP
rs1458766027 2702 dbSNP
rs1380373092 2704 dbSNP
rs1361177864 2705 dbSNP
rs546046780 2713 dbSNP
rs190073734 2714 dbSNP
rs1200779193 2715 dbSNP
rs1052469806 2717 dbSNP
rs1378088992 2719 dbSNP
rs1477664898 2721 dbSNP
rs1163052612 2730 dbSNP
rs1403998216 2738 dbSNP
rs1467302159 2742 dbSNP
rs185173026 2744 dbSNP
rs960191803 2747 dbSNP
rs1399890619 2748 dbSNP
rs935285206 2755 dbSNP
rs1001774190 2756 dbSNP
rs1332119183 2758 dbSNP
rs922879980 2761 dbSNP
rs779376134 2772 dbSNP
rs531381818 2778 dbSNP
rs1027415204 2780 dbSNP
rs757544060 2785 dbSNP
rs562674783 2786 dbSNP
rs552438023 2789 dbSNP
rs1037118543 2791 dbSNP
rs1267797261 2796 dbSNP
rs541680851 2797 dbSNP
rs952501222 2799 dbSNP
rs1004708718 2800 dbSNP
rs918330470 2802 dbSNP
rs1051653522 2805 dbSNP
rs972383073 2806 dbSNP
rs931916655 2807 dbSNP
rs1391898832 2809 dbSNP
rs1490011274 2815 dbSNP
rs1386620522 2817 dbSNP
rs28491108 2821 dbSNP
rs1043122501 2825 dbSNP
rs947032333 2830 dbSNP
rs7253068 2833 dbSNP
rs540104916 2841 dbSNP
rs969988208 2846 dbSNP
rs950005090 2851 dbSNP
rs111854720 2853 dbSNP
rs1283723504 2854 dbSNP
rs980238349 2858 dbSNP
rs1225237400 2860 dbSNP
rs55635810 2861 dbSNP
rs1302618092 2862 dbSNP
rs866009631 2862 dbSNP
rs55654637 2863 dbSNP
rs71188055 2864 dbSNP
rs1398738120 2867 dbSNP
rs893902907 2870 dbSNP
rs78889591 2878 dbSNP
rs1296611449 2879 dbSNP
rs1362943509 2880 dbSNP
rs1420843783 2880 dbSNP
rs1424380971 2880 dbSNP
rs201749862 2880 dbSNP
rs367814582 2880 dbSNP
rs374566407 2880 dbSNP
rs57591690 2880 dbSNP
rs779413728 2880 dbSNP
rs553110839 2881 dbSNP
rs745485513 2881 dbSNP
rs758682359 2881 dbSNP
rs1461688445 2885 dbSNP
rs1378529388 2886 dbSNP
rs1179079999 2887 dbSNP
rs1016124865 2888 dbSNP
rs1302939787 2889 dbSNP
rs1008250786 2891 dbSNP
rs1429273618 2892 dbSNP
rs1450013367 2893 dbSNP
rs1311085016 2895 dbSNP
rs891183785 2896 dbSNP
rs1239218005 2898 dbSNP
rs1198058388 2900 dbSNP
rs1304743642 2904 dbSNP
rs1254205216 2910 dbSNP
rs1030132672 2911 dbSNP
rs995930271 2914 dbSNP
rs900418882 2919 dbSNP
rs529778623 2925 dbSNP
rs192855979 2926 dbSNP
rs999544021 2930 dbSNP
rs901139527 2933 dbSNP
rs1041036830 2935 dbSNP
rs1177021940 2940 dbSNP
rs1193678456 2941 dbSNP
rs942967400 2942 dbSNP
rs891447282 2944 dbSNP
rs1427979454 2945 dbSNP
rs1052879378 2946 dbSNP
rs1332926150 2948 dbSNP
rs1225178880 2949 dbSNP
rs1400626751 2958 dbSNP
rs367902732 2958 dbSNP
rs1296255591 2960 dbSNP
rs544844673 2964 dbSNP
rs143802034 2969 dbSNP
rs1219736718 2970 dbSNP
rs1322891288 2972 dbSNP
rs928335898 2972 dbSNP
rs1048581065 2980 dbSNP
rs1260195182 2986 dbSNP
rs1282487628 2990 dbSNP
rs1204192693 2996 dbSNP
rs766159049 2999 dbSNP
rs762702034 3020 dbSNP
rs866550479 3021 dbSNP
rs931450444 3022 dbSNP
rs1192268718 3028 dbSNP
rs1268860457 3032 dbSNP
rs1337557818 3042 dbSNP
rs1304993210 3044 dbSNP
rs559036872 3045 dbSNP
rs1407172322 3048 dbSNP
rs972435815 3049 dbSNP
rs1409017398 3061 dbSNP
rs920206848 3070 dbSNP
rs974340084 3070 dbSNP
rs1436997597 3074 dbSNP
rs866264243 3078 dbSNP
rs772713912 3083 dbSNP
rs961702116 3084 dbSNP
rs1015611636 3085 dbSNP
rs546771089 3087 dbSNP
rs1340235582 3091 dbSNP
rs1471460353 3102 dbSNP
rs979775024 3110 dbSNP
rs1028323436 3114 dbSNP
rs1291636733 3117 dbSNP
rs996003826 3120 dbSNP
rs1418137970 3121 dbSNP
rs545638834 3124 dbSNP
rs1021517649 3128 dbSNP
rs1263269423 3140 dbSNP
rs1205183231 3147 dbSNP
rs1184388061 3157 dbSNP
rs989985342 3170 dbSNP
rs1168549815 3172 dbSNP
rs1415566168 3182 dbSNP
rs955832751 3185 dbSNP
rs1459771577 3187 dbSNP
rs1405700728 3202 dbSNP
rs1021989475 3205 dbSNP
rs1262306704 3207 dbSNP
rs1011474102 3210 dbSNP
rs1421445406 3211 dbSNP
rs891678605 3212 dbSNP
rs1327083709 3214 dbSNP
rs1052778803 3216 dbSNP
rs938289116 3223 dbSNP
rs1381657426 3228 dbSNP
rs906991640 3229 dbSNP
rs1291510793 3232 dbSNP
rs1205602865 3233 dbSNP
rs1352794963 3247 dbSNP
rs75560452 3252 dbSNP
rs769267486 3256 dbSNP
rs1238491263 3262 dbSNP
rs1213077119 3270 dbSNP
rs1000045484 3275 dbSNP
rs1238799517 3276 dbSNP
rs1472931687 3281 dbSNP
rs1182676974 3284 dbSNP
rs1383148518 3286 dbSNP
rs1047404 3292 dbSNP
rs1020070389 3293 dbSNP
rs1384214388 3303 dbSNP
rs1400150715 3304 dbSNP
rs1006883022 3305 dbSNP
rs890043531 3307 dbSNP
rs1047405 3312 dbSNP
rs1314699736 3316 dbSNP
rs931501189 3318 dbSNP
rs897302935 3319 dbSNP
rs1450740231 3330 dbSNP
rs1037149246 3332 dbSNP
rs778033217 3333 dbSNP
rs73937057 3334 dbSNP
rs372333305 3335 dbSNP
rs928401845 3339 dbSNP
rs1287592299 3340 dbSNP
rs769987210 3342 dbSNP
rs980209929 3342 dbSNP
rs1240938201 3347 dbSNP
rs908763193 3348 dbSNP
rs986763835 3352 dbSNP
rs768521547 3358 dbSNP
rs921381786 3359 dbSNP
rs1427340641 3360 dbSNP
rs914511274 3361 dbSNP
rs964925889 3362 dbSNP
rs557019677 3366 dbSNP
rs1404229997 3373 dbSNP
rs1021477111 3376 dbSNP
rs1449403922 3377 dbSNP
rs1329989310 3379 dbSNP
rs1011791835 3381 dbSNP
rs1335622765 3381 dbSNP
rs990037543 3382 dbSNP
rs747115324 3385 dbSNP
rs1385330467 3387 dbSNP
rs1185004719 3400 dbSNP
rs955927382 3401 dbSNP
rs1031530431 3407 dbSNP
rs975937283 3409 dbSNP
rs1260821535 3418 dbSNP
rs1242266076 3426 dbSNP
rs537690952 3426 dbSNP
rs780069886 3428 dbSNP
rs1019664028 3432 dbSNP
rs906857155 3433 dbSNP
rs1269571275 3435 dbSNP
rs1480784075 3438 dbSNP
rs569029708 3439 dbSNP
rs1427391644 3441 dbSNP
rs1448645386 3442 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 3'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuaucUCACGUCUGGUCCCaga 5'
               | |||| ||||| |   
Target 5' -----ATTGCACACCAGAGagt 3'
 		1 - 17
2 
miRNA  3' cuaUCUCACGUCUG-----GUCCCaga 5'
             | ||  || |:     ||| |   
Target 5' gagAAAGGCCATATGAATGCAGTG--- 3'
 		26 - 49
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.357 0 -0.335 0 65 Click to see details
LIHC 0.309 0.02 0.308 0.02 43 Click to see details
LUAD -0.588 0.03 -0.673 0.01 11 Click to see details
PAAD 0.816 0.09 1.000 0.5 4 Click to see details
KIRC 0.184 0.1 0.204 0.08 51 Click to see details
STAD 0.224 0.15 0.277 0.1 24 Click to see details
PRAD 0.148 0.15 0.169 0.12 50 Click to see details
ESCA 0.565 0.16 0.700 0.09 5 Click to see details
THCA -0.109 0.23 0.042 0.39 49 Click to see details
LUSC -0.143 0.23 -0.115 0.28 29 Click to see details
KICH -0.146 0.24 -0.275 0.09 25 Click to see details
CHOL -0.239 0.3 -0.321 0.24 7 Click to see details
BLCA 0.145 0.31 0.371 0.1 14 Click to see details
HNSC -0.084 0.34 -0.123 0.27 28 Click to see details
KIRP -0.075 0.35 -0.067 0.37 28 Click to see details
UCEC 0.097 0.37 0.107 0.35 15 Click to see details
COAD 0.061 0.46 -0.100 0.44 5 Click to see details
COAD 0.061 0.46 -0.100 0.44 5 Click to see details
COAD 0.061 0.46 -0.100 0.44 5 Click to see details
COAD 0.061 0.46 -0.100 0.44 5 Click to see details
COAD 0.061 0.46 -0.100 0.44 5 Click to see details
101 hsa-miR-504-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000044 DRD1 dopamine receptor D1 2 1
MIRT004457 VEGFA vascular endothelial growth factor A 2 1
MIRT016249 BAX BCL2 associated X, apoptosis regulator 1 1
MIRT016251 GADD45A growth arrest and DNA damage inducible alpha 1 1
MIRT016252 FAS Fas cell surface death receptor 1 1
MIRT016253 BBC3 BCL2 binding component 3 1 1
MIRT016254 TP53I3 tumor protein p53 inducible protein 3 1 1
MIRT016255 TCEAL1 transcription elongation factor A like 1 2 1
MIRT016256 MDM2 MDM2 proto-oncogene 2 1
MIRT016257 TP53 tumor protein p53 3 1
MIRT041072 P2RY13 purinergic receptor P2Y13 1 1
MIRT041073 PPIL1 peptidylprolyl isomerase like 1 1 1
MIRT041074 ZNF814 zinc finger protein 814 1 1
MIRT041075 HIST1H2AC histone cluster 1 H2A family member c 1 1
MIRT041076 FEM1A fem-1 homolog A 1 1
MIRT041077 TXNRD1 thioredoxin reductase 1 1 1
MIRT041078 RAI1 retinoic acid induced 1 1 1
MIRT041079 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT041080 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 1 1
MIRT041081 PDLIM1 PDZ and LIM domain 1 1 1
MIRT041082 FAM208B family with sequence similarity 208 member B 1 1
MIRT041083 PSAT1 phosphoserine aminotransferase 1 1 1
MIRT041084 TMEM8A transmembrane protein 8A 1 1
MIRT041085 RABGAP1 RAB GTPase activating protein 1 1 1
MIRT041086 BRD2 bromodomain containing 2 1 1
MIRT041087 C11orf58 chromosome 11 open reading frame 58 1 1
MIRT041088 CNOT8 CCR4-NOT transcription complex subunit 8 1 1
MIRT041089 RPL10 ribosomal protein L10 1 1
MIRT041090 SMCR7L mitochondrial elongation factor 1 1 1
MIRT041091 CENPBD1 CENPB DNA-binding domain containing 1 1 1
MIRT041092 SF3B1 splicing factor 3b subunit 1 1 1
MIRT041093 MTFP1 mitochondrial fission process 1 1 1
MIRT438313 CDK6 cyclin dependent kinase 6 1 1
MIRT438352 TFF1 trefoil factor 1 3 1
MIRT443009 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT448052 SFRP1 secreted frizzled related protein 1 2 2
MIRT457649 ZNF69 zinc finger protein 69 2 2
MIRT458626 TRIM72 tripartite motif containing 72 2 2
MIRT466176 TMED5 transmembrane p24 trafficking protein 5 2 2
MIRT472583 NACC1 nucleus accumbens associated 1 2 2
MIRT473576 MAT2A methionine adenosyltransferase 2A 2 6
MIRT485155 RASL10B RAS like family 10 member B 2 2
MIRT490063 PRRT2 proline rich transmembrane protein 2 2 2
MIRT493015 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT499425 PLCG2 phospholipase C gamma 2 2 11
MIRT506956 HOXB3 homeobox B3 2 4
MIRT507100 GPCPD1 glycerophosphocholine phosphodiesterase 1 2 2
MIRT508101 ANKRD33B ankyrin repeat domain 33B 2 4
MIRT522215 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT530327 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT531042 ZNF502 zinc finger protein 502 2 2
MIRT532580 GSS glutathione synthetase 2 2
MIRT534841 RAB15 RAB15, member RAS oncogene family 2 2
MIRT536820 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT538303 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT546344 TFAP2C transcription factor AP-2 gamma 2 2
MIRT546704 RORA RAR related orphan receptor A 2 4
MIRT549222 BCL2L11 BCL2 like 11 2 4
MIRT549623 TMEM101 transmembrane protein 101 2 2
MIRT549931 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT550163 ZNF223 zinc finger protein 223 2 4
MIRT550555 ARSK arylsulfatase family member K 2 2
MIRT553402 TRIM2 tripartite motif containing 2 2 4
MIRT554084 SNX4 sorting nexin 4 2 4
MIRT556962 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT558525 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT558565 CRLF3 cytokine receptor like factor 3 2 4
MIRT560946 TPM4 tropomyosin 4 2 4
MIRT561628 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT562174 HOXA13 homeobox A13 2 2
MIRT568635 ACVR2A activin A receptor type 2A 2 2
MIRT574908 Plcg2 phospholipase C, gamma 2 2 7
MIRT575177 Atg9a autophagy related 9A 2 2
MIRT611972 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613623 CLASP1 cytoplasmic linker associated protein 1 2 4
MIRT635830 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 4
MIRT637344 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 4
MIRT643205 JAK3 Janus kinase 3 2 2
MIRT650232 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT655940 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT662021 ZNF445 zinc finger protein 445 2 2
MIRT662037 FUT2 fucosyltransferase 2 2 2
MIRT666873 POU2F2 POU class 2 homeobox 2 2 2
MIRT684310 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT687333 OSMR oncostatin M receptor 2 2
MIRT689008 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT695137 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695154 PRY PTPN13-like, Y-linked 2 2
MIRT700695 POLR3D RNA polymerase III subunit D 2 2
MIRT703269 GNL3L G protein nucleolar 3 like 2 2
MIRT708941 CRY2 cryptochrome circadian clock 2 2 2
MIRT709200 SAPCD2 suppressor APC domain containing 2 2 2
MIRT709572 PDE4A phosphodiesterase 4A 2 2
MIRT711295 PSME3 proteasome activator subunit 3 2 2
MIRT712425 MACROD2 MACRO domain containing 2 2 2
MIRT713941 PIGR polymeric immunoglobulin receptor 2 2
MIRT714124 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT714630 KIAA1143 KIAA1143 2 2
MIRT724046 SMIM14 small integral membrane protein 14 2 2
MIRT724649 PKDREJ polycystin family receptor for egg jelly 2 2
MIRT725476 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-504 Emodin NULL 3220 Microarray K562 cells 23744534 2013 down-regualted
miR-504 Mistletoe lectin-I NULL NULL Microarray colorectal cancer cells CLY cells 20955366 2011 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-504 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-504 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-504 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-504-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-504-5p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-504-5p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-504-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-504-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-504-5p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-504-5p Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7, MCF-7-TT)
hsa-miR-504-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-504-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (A375)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-504-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-504-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM17)
hsa-miR-504-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-504-5p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-miR-504-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-504-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-504-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-504-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-504-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-504-5p Cisplatin 5460033 NSC119875 approved resistant cell line (H460)

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