miRTarBase - #MIRT043667


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pre-miRNA Information
pre-miRNA hsa-mir-342   
Genomic Coordinates chr14: 100109655 - 100109753
Synonyms MIRN342, hsa-mir-342, MIR342
Description Homo sapiens miR-342 stem-loop
Comment This sequence was predicted by homology to a rat miRNA .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-342-3p
Sequence 61| UCUCACACAGAAAUCGCACCCGU |83
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
C-to-U 17 14 + 100109731 26209130, 28550310 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30534923 3 COSMIC
COSN31541843 8 COSMIC
COSN30539229 10 COSMIC
COSN31505541 10 COSMIC
COSN1080961 15 COSMIC
COSN1080960 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs751380399 1 dbSNP
rs902260466 4 dbSNP
rs560521928 8 dbSNP
rs757207115 12 dbSNP
rs1253187345 15 dbSNP
rs1450379061 16 dbSNP
rs562656621 19 dbSNP
rs375982953 20 dbSNP
rs368305313 21 dbSNP
rs779049179 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FIGN   
Synonyms -
Description fidgetin, microtubule severing factor
Transcript NM_018086   
Expression
Putative miRNA Targets on FIGN
3'UTR of FIGN
(miRNA target sites are highlighted)		 
>FIGN|NM_018086|3'UTR
   1 TAACTTCTTTAGAAAAAAAAAATGTAATGAATGTTGGCACACACACATAAAACCTGCTACATAGGGAATAGAGCCCCTTT
  81 CCAGTAGAGTTTAAATTGCAAAGGGTACTGGGGAAGATGACGATTAAGTTGCATCTTTAGAGTCAGGGTAGATTTGGAGG
 161 AAAAGTGCATCAAATGAGAGCTTCTGATTTGAAAGCCCCAGATGACAGAAAGCATATGTGGATGCTCAGTTCTGTTCAAG
 241 CTAGACAACACTCACCAAGGAGCAAGGTGCAAGTGTGTTGATTTCAGAAGGACATGAACCTCGTGTGTTGATTCCATTCT
 321 GCTGTTCTCGAGATTTAGTTGCTGTCAAGTGCCTGGAGTGGTGCTTTATTTTTTGTTTGCCTCACAATTACATTGGTGGC
 401 ATGTGCTAATATAAAGAGCTTTAACTTCAAACATTATTGGACTAAAGAGATGAACAGTTGTGTTATGACAGAAAACCAGA
 481 TTTTTGCCATTTTAAGAGCAACAGTATTCCTCAATCCTGTCTGTTCTGCAGTATTAAGCTAAGAACAGGTAAAACAGGGT
 561 AACGGTAATCTGGACCTTAATTTCTGCAGTTCATTTCTTTTAATGTTCTTGTCTGCAAAAACTCAGGAAAGTGATTGTGA
 641 TTTGTACAGTACCTCAAAGGAATGTGTTGAAAGCACTATGTACTGCTGAGAGTAATAGGATAGGCTTCAATGTTACTTTA
 721 TATTAAAATGTATGTTTACCTCAACAATTGGAAAATAGCAAGGAAAATTACTTTGAATGTATCCAGAAAAATACTGAAGT
 801 GTGATACAACTGAATATTTACAGTTTAAAGTAGAAATGGAAGGATTTTTTTAAGTTCTTTTACTAATTATGGGGAATTAA
 881 CCAGAGCAGAATAATTCTTTATGTCAATAACTGCAAGAGTTCTTAGTACATTGCTCCTTGATAATTAAGTGAAAATGTTC
 961 TTAAAAGGTACACTGGTTAATTGAAAGCTACTTATTCAGTTTGTGTTAGTGTCTAGACCTGTCAGCCACAAGACCTGTTT
1041 AGGACCCTGAAAGTCACAGTACCTAAAAACTATGACTGCCTTTTTATTGCATAGGTGGTAGTGGTGGTGATGGTGGTGGT
1121 AGTTTGCAAGTTATCTCTTAAAACTGCTGGGAATGGTGTCATTCTATTCACTAATCTAGCTTATAGACTTGCCGTGCTGT
1201 TTGATAGAATGCAGAGGATAGCAACCAAAACAAATACACAAATAAATAAAAACAAAAACCAACCAACAAACCAACTTACA
1281 TACACATATATATATCCACAAAGAACCTCTCCATCTCCTCCCCTTCTTTTTGACTCCACTCTTGTCAGTGCAATTTTGCT
1361 TCTCATTTTGAAATCTGGGCTGTAGTGCTCCTGCTTTATTTCTACCTCAGTTTTGTTACATTTCTCTTGGAAAGTAAAGT
1441 AGAAAATTGGAAGTGGACACACACACTGCAATGTAGCTTGCCAAACATGTTACTTTGTTTTCTTCCATCTTTCACCGTAA
1521 ATCTAGTTTCCAAAGACATCAGCATTTGTGCTTACTTCCACCTCAGTCTACCAGCCCCACCCCTACCCATGGCATAAGTG
1601 GCATTTTTCTTAATTTCCTATTTTTCTCCTGCTCTCTGTCAAGTTGTTCTTTGTATCCTTTAATGCTTTATGTGCAACCT
1681 TTCATTGATAGTGGGCTGATGTTTGGCAATGCTTCTGAACTGTCACAGAGCAGGCTGTAGCTTTCCACAGCCACTGCCCA
1761 TGCATAAGCAGAACAGCCTGGCCTTTTGAATGTATTTTCCTGGGTTTTTTCCCCTTTTCTTTTTTTAGTTTAGAGATGCA
1841 GTAACAAAACTGTTGCAAAGCACTGGCATTTTATGTATTCAATAAATAAGTGATGTACATTTTTAAAAAAATTTAAATAA
1921 ATGCAATGAGAAGCCCCAAGAAAGGCCTTTCTGTTTTTTTTTTCTTACAAAAATTTTTACCGATCTTATCCACAATATCC
2001 AATTCTCTGAAACACTTAACATAGAGAAAGCTCATGAGGGATTTCTTATCTCTGAAATTTTATGATGCTTGATCTTTACT
2081 CCCCTTTTTTTATTTTTTATGTTGCTAAAAACTGAGCAATTGAACCAGAATTTAATTTACTGTGACATTCTGTCAATTAA
2161 AGCTGTGCTTAAATATAAATATTCCATATTAAAAAGCAGTGCCTTTCATTAAGGATACAAAAAATAATACTTAAATACGC
2241 CCTCTGCTTTTCGCAAGTGAATAAATGCTACAATCGTGTTCTGGGTCTACCCTGTGCATCCCTTGTAAGGAAATTCTAAT
2321 ATCCACATTAACTTGTAGGTTCATATTGATCTCACTGACAAGTTTACTTTTGCACAGTGCTGACCTATTTTCTGACTTTT
2401 AGACATTATATTTCATTTCCGCCAACATGCTGTGTTCACTTGAAAGCGTCTGGCAAGTTTTGACAAACCCAGTCTTATTT
2481 AGACAACTTTGGAAAATCCAATATTGACCCACATTTTTTTGTGGCTAGTAAGATTTAATGCCAAATATATGACTGCACTA
2561 TTGTGTTTTACACTCATTTATAAAACTGAAAATAAATTGAAGTCATACATCTTGGCTTTTAGCTTTAAGTGACTTAAAAA
2641 TTAGAACTCTGAGTGACTTAAAAATTAATTTGAGATGCAAGTGGTCAAAAATCCATGTATTTAGACAGAAGCTGAAGTCG
2721 TATGTGATTTTCATTTAGCCTCACAAAATCCAAGATTTGATCTCTTAGGAAATTGGGCATGTTGAAGAAATGAAGATCTG
2801 TTGGAGGAGATATGGCTGACCTTTGAGTAGATAGTGCTCTCCTGTGATTCTTTGATTCTGCATGGCAGCATTATGAGCTC
2881 TTCTATAAACTAGCTTAATAATGAGCTCTATTCTGACCATCTATTCTGGAACTTGGAGTGGGGGTGGGGTACCACATCCT
2961 CAGAAGTGAATGTGTACAGTCGGTGATAGTACAACTGAGTAATGGGGCTTCATACCCTTGGCCTCTTTTTGACTGCTAAG
3041 AATTTGGAGAAGGCTATTAATGAAGGTAAGGTAATGAGCCAGTCCAAATCCCTCACTGTCTGGCTAAGAGATTGAGCCAT
3121 TCCACTTTACAGCCCCTAATTCCCTTCTTCCCAACTGCAGCAACATTTCCAACAGGGACAAAAAGGAAGTGAAGGAAACC
3201 ACTTCAGTATTGGGATCAATAGAAATTCAAGAGGTAGTTCATAATGACCTTATATGTGACACAAATGGAAATACTCTACA
3281 CTTCTGGCATGCTTCTCTCCCAAATATTTAGAACATTAGTGACAATATGAAAAACTTTGCTGACTGAGCTGATCAATGGA
3361 ATGTGAAGGCAGTATACTTTAAGGCTATTTACTTTCACACAGAATGTTTATCTATTAGTCAGTTTGTATTCTACTCAAAT
3441 GCAGATAGACGGGTATAATGTTTTCTTGTGCATTTGAAACCTATCAAGGAGAAAATAAACCATTCCACTAAAATACATAG
3521 GCCAAACACCATCTGGGAAAGTGATAAAAGCTATCCAGAGGCTATGCTATGTAAAATAGCAAGGTCAATTTACATGGGTT
3601 GCATAGTACTTGGCTATGCAGTTTTCAAAAGAACACATCCAAAAAAAAAAAAAATCCAAATTAGTTCCTATAATAGGTCT
3681 TTGTAAATTTAAATATATTTGTGGGTTGGAAAATACGTTTTTAGAGACATTTAGAATTTCTTTCTCTAAAAATGTATCCA
3761 ACTCCAAGCAGAAAGAGACTTCTGTACTCACATTCTCATGTTTCTTAGAATTGGGTAGCATGATCATTGAATCTGTATTT
3841 TGCAAAGTGAAAGGGACGCAGCTTGTTGAACTATTGAGGCCACTAAAGTAAAGTTCTAATATATATATATAAATATAAAA
3921 TTAGTGTGTGTGTTTGTATGTGTGTATGTGTGTGTGTTCTTTCATCACCACCTAGTTGAACTTTAAAACAGACGTCTACT
4001 TTTCATTATTCAGAAGCAACTTGTTACTTCCTTTCTTCATATGTGCAGAGATACACATGATCATGTTACAATTTGAAGTG
4081 TTTTAATGTGTTTTTTTTTCTTTTGAAACGTAAAGCCTTCAGTTGTTGAATCATCTGCCGATTTTTATATGAAGCACATT
4161 AGCAAACCTGGAGCTATTAGTATTTCAGAATTCACAACCAGCTGTACTTGTGACTAACCAACACATGAACTGAAGCTCAC
4241 ACTTTGCTAAGACCTTTGGTTGACATTCGATTTTGAACCTGCCAGATGCATTTGTGTGAACCAGGGATACTGCATCTTTA
4321 ATGAACAAGTCTCTCCTCTTTCCCCTGTTTTTAAATACAACACAAGCAGTGTAGCACTAGGCACTGCAATTGTCAAAGAC
4401 AATTAGACTGGAAGCAGGAAAATTTCACCTCCCTGTCTCAGTGATATGTAGAATGTCGGCAGCATGGGTCAGCCTTGCCA
4481 CAGAGTTGTGTGAGAATATATGAATCAGTCCTATAGAATGTTAAATATTTATAAAATGGTTCTGTAGTACACCAAGGTTG
4561 GGAGCACATTCATTCCTTCTTGTTGTCTTATGATACAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugcccACG----CUAAAGACACACUCu 5'
               |||    || |  |||||||| 
Target 5' agcctTGCCACAGAGT--TGTGTGAGa 3'
 4471 - 4495 148.00 -15.30
2 
miRNA  3' ugcCCACGCUAAAGACACACUcu 5'
             | ||| |||  |||||||  
Target 5' ccaGATGC-ATT--TGTGTGAac 3'
 4282 - 4301 139.00 -10.10
3 
miRNA  3' ugccCACGCUAAAGACACACUCu 5'
              |||:| | | |||||| | 
Target 5' gtatGTGTG-TATGTGTGTGTGt 3'
 3936 - 3957 130.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30506366 5 COSMIC
COSN30193228 10 COSMIC
COSN27524667 12 COSMIC
COSN20064804 13 COSMIC
COSN28854058 22 COSMIC
COSN30492652 24 COSMIC
COSN30156440 26 COSMIC
COSN5270129 30 COSMIC
COSN30155742 46 COSMIC
COSN30502692 46 COSMIC
COSN31509284 87 COSMIC
COSN27631962 108 COSMIC
COSN31502745 122 COSMIC
COSN28201213 165 COSMIC
COSN28750966 206 COSMIC
COSN31579894 303 COSMIC
COSN5127422 316 COSMIC
COSN31569074 329 COSMIC
COSN1227839 353 COSMIC
COSN22193859 445 COSMIC
COSN31485463 446 COSMIC
COSN19406226 464 COSMIC
COSN26553025 609 COSMIC
COSN25543421 632 COSMIC
COSN26559389 663 COSMIC
COSN8607871 710 COSMIC
COSN31515616 725 COSMIC
COSN30539144 751 COSMIC
COSN20097313 763 COSMIC
COSN4798658 843 COSMIC
COSN4798657 852 COSMIC
COSN24783012 1022 COSMIC
COSN24309160 1055 COSMIC
COSN20598059 1336 COSMIC
COSN31480506 1390 COSMIC
COSN26481370 1535 COSMIC
COSN31539243 1541 COSMIC
COSN23517717 1545 COSMIC
COSN8607870 1583 COSMIC
COSN16975848 1612 COSMIC
COSN25802145 1633 COSMIC
COSN30539066 1693 COSMIC
COSN28749275 1722 COSMIC
COSN20090666 1811 COSMIC
COSN31585598 1822 COSMIC
COSN18017796 1905 COSMIC
COSN28983041 1953 COSMIC
COSN27237603 1954 COSMIC
COSN28648027 2006 COSMIC
COSN25441259 2218 COSMIC
COSN21718651 2224 COSMIC
COSN1803497 2285 COSMIC
COSN15121210 2338 COSMIC
COSN4798656 2420 COSMIC
COSN20295394 2437 COSMIC
COSN17205435 2622 COSMIC
COSN32013846 2756 COSMIC
COSN4798655 2834 COSMIC
COSN20946304 3054 COSMIC
COSN25088955 3169 COSMIC
COSN30327727 3177 COSMIC
COSN6678664 3284 COSMIC
COSN14938220 3293 COSMIC
COSN24997436 3459 COSMIC
COSN18723676 3640 COSMIC
COSN25209599 3751 COSMIC
COSN4986926 3758 COSMIC
COSN24147339 3806 COSMIC
COSN1803496 4004 COSMIC
COSN14959322 4020 COSMIC
COSN18969356 4084 COSMIC
COSN23248577 4090 COSMIC
COSN21056439 4445 COSMIC
COSN15774972 4570 COSMIC
COSN26002330 4575 COSMIC
COSN27290905 4597 COSMIC
COSN1227838 4616 COSMIC
COSN1227837 4617 COSMIC
COSN19197846 4634 COSMIC
COSN21575249 4644 COSMIC
COSN28201591 4668 COSMIC
COSN32042241 4727 COSMIC
COSN23039903 4748 COSMIC
COSN7113764 4846 COSMIC
COSN7113763 4850 COSMIC
COSN8761776 4990 COSMIC
COSN1803495 5052 COSMIC
COSN17223005 5126 COSMIC
COSN18723450 5169 COSMIC
COSN5487948 5301 COSMIC
COSN14534957 5617 COSMIC
COSN21634479 5787 COSMIC
COSN20880514 5999 COSMIC
COSN30317321 6406 COSMIC
COSN25938900 6743 COSMIC
COSN22809167 6916 COSMIC
rs59950510 2576 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1200102380 1 dbSNP
rs1422127311 4 dbSNP
rs1361571155 7 dbSNP
rs769650831 9 dbSNP
rs754721436 11 dbSNP
rs761628875 12 dbSNP
rs776439881 13 dbSNP
rs1216764497 19 dbSNP
rs1491181585 23 dbSNP
rs3833554 23 dbSNP
rs397725251 23 dbSNP
rs550297717 23 dbSNP
rs766204273 23 dbSNP
rs1370449819 25 dbSNP
rs151191583 30 dbSNP
rs1480836261 31 dbSNP
rs746714815 33 dbSNP
rs900176934 41 dbSNP
rs779573744 43 dbSNP
rs771769509 46 dbSNP
rs1240363989 48 dbSNP
rs1211172039 52 dbSNP
rs991653857 59 dbSNP
rs1187099650 70 dbSNP
rs944325996 74 dbSNP
rs762315790 84 dbSNP
rs567101662 85 dbSNP
rs770860855 87 dbSNP
rs988737886 90 dbSNP
rs375836679 98 dbSNP
rs1178299488 99 dbSNP
rs935415779 102 dbSNP
rs1399713148 103 dbSNP
rs958442247 104 dbSNP
rs747281449 108 dbSNP
rs1430806915 109 dbSNP
rs1222428127 121 dbSNP
rs1345399950 122 dbSNP
rs1403539054 147 dbSNP
rs774839329 150 dbSNP
rs1285541341 151 dbSNP
rs1324543593 166 dbSNP
rs559001569 170 dbSNP
rs1282413924 173 dbSNP
rs979538424 177 dbSNP
rs772312547 180 dbSNP
rs969344274 182 dbSNP
rs79736763 183 dbSNP
rs565969325 186 dbSNP
rs1201352742 190 dbSNP
rs1009560674 206 dbSNP
rs901849701 208 dbSNP
rs1175178405 216 dbSNP
rs537719256 225 dbSNP
rs960932512 229 dbSNP
rs1162350395 232 dbSNP
rs1014748346 233 dbSNP
rs769355611 245 dbSNP
rs1423218766 255 dbSNP
rs1008077510 265 dbSNP
rs755544545 269 dbSNP
rs887634358 272 dbSNP
rs1048952718 275 dbSNP
rs1027318567 287 dbSNP
rs1224430227 290 dbSNP
rs995887732 291 dbSNP
rs552333095 300 dbSNP
rs1357195050 303 dbSNP
rs1415978166 306 dbSNP
rs546169730 314 dbSNP
rs749142133 314 dbSNP
rs1437085139 316 dbSNP
rs1202140788 325 dbSNP
rs563795772 328 dbSNP
rs1040055312 329 dbSNP
rs1234302171 330 dbSNP
rs1008460934 332 dbSNP
rs1470279752 334 dbSNP
rs568761229 337 dbSNP
rs1182450527 345 dbSNP
rs60160544 346 dbSNP
rs949962723 352 dbSNP
rs1052721241 356 dbSNP
rs935459263 360 dbSNP
rs535288221 370 dbSNP
rs1409805113 380 dbSNP
rs1043826598 383 dbSNP
rs1356523921 385 dbSNP
rs1447706563 388 dbSNP
rs1463994632 393 dbSNP
rs530109351 401 dbSNP
rs948160075 404 dbSNP
rs780774907 405 dbSNP
rs991146245 419 dbSNP
rs937100295 430 dbSNP
rs1212610660 435 dbSNP
rs1274776209 435 dbSNP
rs979592164 462 dbSNP
rs968182590 464 dbSNP
rs386652230 465 dbSNP
rs756680400 465 dbSNP
rs1214254691 466 dbSNP
rs1314376579 467 dbSNP
rs1369575138 467 dbSNP
rs1279747840 468 dbSNP
rs1021194710 469 dbSNP
rs184453963 480 dbSNP
rs192146541 483 dbSNP
rs1166518728 487 dbSNP
rs1422021467 496 dbSNP
rs916567525 499 dbSNP
rs992191517 514 dbSNP
rs1336395197 527 dbSNP
rs1404143358 530 dbSNP
rs1454693965 538 dbSNP
rs960753472 563 dbSNP
rs1346021323 564 dbSNP
rs907758384 581 dbSNP
rs1019378652 584 dbSNP
rs1007548572 596 dbSNP
rs1435916939 607 dbSNP
rs1260925205 644 dbSNP
rs1325187034 647 dbSNP
rs1203793979 652 dbSNP
rs1260348292 683 dbSNP
rs983387886 685 dbSNP
rs1191735812 687 dbSNP
rs572348357 690 dbSNP
rs1176134454 699 dbSNP
rs189491396 710 dbSNP
rs1027738574 715 dbSNP
rs1173250288 715 dbSNP
rs1384425153 725 dbSNP
rs994708103 727 dbSNP
rs557327309 730 dbSNP
rs537109381 732 dbSNP
rs142242301 748 dbSNP
rs777340291 752 dbSNP
rs1404136653 756 dbSNP
rs576114039 759 dbSNP
rs556224441 760 dbSNP
rs535936175 762 dbSNP
rs1347016734 763 dbSNP
rs1359573969 768 dbSNP
rs1259768081 772 dbSNP
rs758033768 779 dbSNP
rs1348002192 783 dbSNP
rs964452464 795 dbSNP
rs1432584239 830 dbSNP
rs1391635505 833 dbSNP
rs1288842198 836 dbSNP
rs1018552306 838 dbSNP
rs1488875677 842 dbSNP
rs573319710 844 dbSNP
rs1168775063 845 dbSNP
rs1448411086 846 dbSNP
rs552795063 851 dbSNP
rs1014603186 852 dbSNP
rs895702406 852 dbSNP
rs1055896675 856 dbSNP
rs553338092 857 dbSNP
rs780749540 858 dbSNP
rs1185328952 879 dbSNP
rs1484513874 897 dbSNP
rs755806538 901 dbSNP
rs1160328652 902 dbSNP
rs1361127859 911 dbSNP
rs1423858424 916 dbSNP
rs1008950931 917 dbSNP
rs1347226856 921 dbSNP
rs1387128015 922 dbSNP
rs1305896880 923 dbSNP
rs184565095 924 dbSNP
rs750028822 926 dbSNP
rs945761199 928 dbSNP
rs1309303706 929 dbSNP
rs1355053440 930 dbSNP
rs1053081822 934 dbSNP
rs1484859108 942 dbSNP
rs1290213433 961 dbSNP
rs1489695054 968 dbSNP
rs1210787925 976 dbSNP
rs999816182 977 dbSNP
rs1250111449 981 dbSNP
rs1417518236 1003 dbSNP
rs1277056891 1010 dbSNP
rs1229397647 1014 dbSNP
rs1307062785 1023 dbSNP
rs914091278 1029 dbSNP
rs1380937753 1034 dbSNP
rs1293490518 1048 dbSNP
rs988298416 1051 dbSNP
rs966724544 1052 dbSNP
rs912131672 1053 dbSNP
rs1230050301 1060 dbSNP
rs1297344324 1062 dbSNP
rs1379841466 1065 dbSNP
rs1392701032 1070 dbSNP
rs566031126 1072 dbSNP
rs558768584 1078 dbSNP
rs948106779 1091 dbSNP
rs192578170 1092 dbSNP
rs570104543 1097 dbSNP
rs1246027980 1100 dbSNP
rs1352313842 1101 dbSNP
rs1251045553 1103 dbSNP
rs1166323422 1115 dbSNP
rs1056568291 1116 dbSNP
rs1423850609 1123 dbSNP
rs994924718 1130 dbSNP
rs962096489 1134 dbSNP
rs1015181969 1139 dbSNP
rs1181803384 1141 dbSNP
rs939307613 1146 dbSNP
rs907876540 1148 dbSNP
rs1169490483 1149 dbSNP
rs1371069905 1151 dbSNP
rs983763679 1155 dbSNP
rs867305094 1156 dbSNP
rs550264542 1171 dbSNP
rs1449863704 1177 dbSNP
rs974575966 1180 dbSNP
rs964527473 1182 dbSNP
rs1480441099 1185 dbSNP
rs187289827 1186 dbSNP
rs567689988 1188 dbSNP
rs1008655900 1193 dbSNP
rs1223865767 1194 dbSNP
rs1306184886 1196 dbSNP
rs764946745 1198 dbSNP
rs955891299 1199 dbSNP
rs1322343926 1203 dbSNP
rs1220810810 1204 dbSNP
rs1259000045 1212 dbSNP
rs1292657635 1216 dbSNP
rs1201885358 1217 dbSNP
rs1239212619 1225 dbSNP
rs556872756 1238 dbSNP
rs1185917371 1239 dbSNP
rs1000169855 1243 dbSNP
rs1259537434 1266 dbSNP
rs1478708946 1270 dbSNP
rs34917512 1273 dbSNP
rs1171067768 1276 dbSNP
rs1352139161 1282 dbSNP
rs10209354 1285 dbSNP
rs1177624456 1286 dbSNP
rs1042681762 1287 dbSNP
rs756793897 1287 dbSNP
rs1183368888 1292 dbSNP
rs148690140 1295 dbSNP
rs1360462610 1296 dbSNP
rs202186132 1296 dbSNP
rs912970368 1301 dbSNP
rs1221852377 1308 dbSNP
rs76144574 1328 dbSNP
rs565621269 1333 dbSNP
rs552226490 1334 dbSNP
rs1393083473 1336 dbSNP
rs878856274 1339 dbSNP
rs1258915930 1341 dbSNP
rs1489208136 1343 dbSNP
rs1194126157 1344 dbSNP
rs532128095 1345 dbSNP
rs1479328459 1348 dbSNP
rs886435039 1351 dbSNP
rs1425390950 1353 dbSNP
rs953572206 1357 dbSNP
rs1156251729 1359 dbSNP
rs1359216748 1361 dbSNP
rs535436207 1362 dbSNP
rs1421985961 1364 dbSNP
rs1299202747 1365 dbSNP
rs1365407243 1375 dbSNP
rs1403485698 1378 dbSNP
rs1183019414 1382 dbSNP
rs562512848 1383 dbSNP
rs1276882538 1387 dbSNP
rs1368514791 1398 dbSNP
rs1418791936 1406 dbSNP
rs1047745912 1421 dbSNP
rs1248696606 1427 dbSNP
rs1304882735 1435 dbSNP
rs1355789760 1436 dbSNP
rs1217328492 1441 dbSNP
rs758261392 1444 dbSNP
rs1193123172 1445 dbSNP
rs1290948483 1447 dbSNP
rs542744322 1448 dbSNP
rs1489811192 1453 dbSNP
rs145941253 1465 dbSNP
rs1272591874 1469 dbSNP
rs930548170 1476 dbSNP
rs1381564197 1477 dbSNP
rs973370726 1489 dbSNP
rs553399364 1498 dbSNP
rs182996669 1507 dbSNP
rs577177720 1508 dbSNP
rs549767317 1516 dbSNP
rs1034562242 1517 dbSNP
rs868299429 1520 dbSNP
rs1001426666 1522 dbSNP
rs1240930183 1524 dbSNP
rs114031893 1525 dbSNP
rs1021274802 1528 dbSNP
rs911763071 1530 dbSNP
rs538934984 1537 dbSNP
rs1229850991 1540 dbSNP
rs1009839462 1543 dbSNP
rs1436875007 1560 dbSNP
rs1202072339 1574 dbSNP
rs987626097 1575 dbSNP
rs891589235 1579 dbSNP
rs955840370 1586 dbSNP
rs1457854473 1592 dbSNP
rs1369668066 1600 dbSNP
rs1031742668 1601 dbSNP
rs1182390992 1611 dbSNP
rs1243104688 1614 dbSNP
rs1472058844 1625 dbSNP
rs1165378479 1626 dbSNP
rs943753898 1634 dbSNP
rs1323288183 1638 dbSNP
rs890633529 1649 dbSNP
rs978423786 1658 dbSNP
rs1051007349 1663 dbSNP
rs1336113493 1664 dbSNP
rs1338630123 1666 dbSNP
rs1436590408 1667 dbSNP
rs932232848 1670 dbSNP
rs192898262 1672 dbSNP
rs920832282 1679 dbSNP
rs1212555095 1682 dbSNP
rs1391472056 1683 dbSNP
rs973422874 1685 dbSNP
rs556457646 1689 dbSNP
rs940670194 1696 dbSNP
rs1202489798 1699 dbSNP
rs1240667671 1702 dbSNP
rs907985469 1705 dbSNP
rs992933520 1709 dbSNP
rs1238529900 1711 dbSNP
rs1453569866 1717 dbSNP
rs1362417207 1727 dbSNP
rs769091515 1728 dbSNP
rs960358832 1730 dbSNP
rs1034201776 1742 dbSNP
rs1426082785 1744 dbSNP
rs144401263 1747 dbSNP
rs979893683 1750 dbSNP
rs536789073 1760 dbSNP
rs1175811099 1764 dbSNP
rs968630612 1781 dbSNP
rs1021494080 1790 dbSNP
rs1334793123 1792 dbSNP
rs188174686 1804 dbSNP
rs1397946910 1807 dbSNP
rs891470410 1810 dbSNP
rs1019661402 1811 dbSNP
rs1007996676 1821 dbSNP
rs1253882844 1823 dbSNP
rs1346561789 1824 dbSNP
rs1012508978 1826 dbSNP
rs543433603 1827 dbSNP
rs78326322 1830 dbSNP
rs899454210 1832 dbSNP
rs547868762 1845 dbSNP
rs1037949327 1858 dbSNP
rs1265719363 1860 dbSNP
rs1478344227 1861 dbSNP
rs1199053790 1875 dbSNP
rs940887910 1880 dbSNP
rs907871587 1881 dbSNP
rs1004017688 1889 dbSNP
rs1384169100 1892 dbSNP
rs886553610 1893 dbSNP
rs993209261 1900 dbSNP
rs1048289681 1904 dbSNP
rs183294749 1905 dbSNP
rs927352276 1911 dbSNP
rs1233373338 1912 dbSNP
rs571637482 1912 dbSNP
rs1300717601 1923 dbSNP
rs755048658 1926 dbSNP
rs1288775537 1927 dbSNP
rs968517976 1931 dbSNP
rs1265562456 1953 dbSNP
rs914375122 1953 dbSNP
rs746560114 1954 dbSNP
rs988694370 1954 dbSNP
rs190623824 1959 dbSNP
rs1319631354 1962 dbSNP
rs1160428360 1963 dbSNP
rs1019288877 1964 dbSNP
rs1291536985 1964 dbSNP
rs201117900 1964 dbSNP
rs1382123188 1968 dbSNP
rs1383320353 1973 dbSNP
rs373124069 1981 dbSNP
rs911696957 1982 dbSNP
rs187929484 1991 dbSNP
rs562733290 2002 dbSNP
rs542456204 2003 dbSNP
rs7583527 2006 dbSNP
rs1241641789 2009 dbSNP
rs996379819 2013 dbSNP
rs978512733 2014 dbSNP
rs1244524199 2019 dbSNP
rs968338040 2019 dbSNP
rs1171948749 2023 dbSNP
rs200784534 2024 dbSNP
rs1022669036 2025 dbSNP
rs1373716103 2031 dbSNP
rs1037834094 2036 dbSNP
rs991066365 2037 dbSNP
rs959671733 2041 dbSNP
rs1005151212 2042 dbSNP
rs143963882 2063 dbSNP
rs1192435606 2064 dbSNP
rs1057157501 2072 dbSNP
rs938679330 2082 dbSNP
rs1211333188 2092 dbSNP
rs927417162 2096 dbSNP
rs1485187014 2099 dbSNP
rs528736955 2101 dbSNP
rs1448381072 2104 dbSNP
rs1331386574 2109 dbSNP
rs183286962 2116 dbSNP
rs1396019374 2119 dbSNP
rs950966819 2120 dbSNP
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rs765969497 5304 dbSNP
rs373933089 5305 dbSNP
rs957635254 5317 dbSNP
rs1392832379 5319 dbSNP
rs1027641212 5341 dbSNP
rs572853167 5352 dbSNP
rs1401035784 5355 dbSNP
rs1237208545 5358 dbSNP
rs1290423499 5358 dbSNP
rs1033273066 5372 dbSNP
rs1232710645 5373 dbSNP
rs1271206499 5381 dbSNP
rs1156434499 5386 dbSNP
rs1001689813 5387 dbSNP
rs1435840195 5391 dbSNP
rs970635323 5411 dbSNP
rs1474596247 5414 dbSNP
rs1162100117 5419 dbSNP
rs1419374600 5422 dbSNP
rs1459959666 5424 dbSNP
rs1164310542 5427 dbSNP
rs1204336016 5430 dbSNP
rs1395154466 5432 dbSNP
rs897165845 5433 dbSNP
rs114691654 5434 dbSNP
rs1014789691 5435 dbSNP
rs1245449441 5438 dbSNP
rs773035519 5449 dbSNP
rs539683699 5455 dbSNP
rs777086225 5457 dbSNP
rs1245487978 5458 dbSNP
rs1250640017 5460 dbSNP
rs570585220 5473 dbSNP
rs1206947011 5482 dbSNP
rs1274922933 5501 dbSNP
rs1285631571 5502 dbSNP
rs1232429202 5511 dbSNP
rs895216891 5519 dbSNP
rs1037018190 5535 dbSNP
rs1005412394 5536 dbSNP
rs1188881173 5541 dbSNP
rs1304271650 5547 dbSNP
rs936495272 5552 dbSNP
rs1460796154 5561 dbSNP
rs771400098 5586 dbSNP
rs1371550594 5614 dbSNP
rs1434376734 5627 dbSNP
rs1365442771 5631 dbSNP
rs557094655 5635 dbSNP
rs888340263 5637 dbSNP
rs1050110081 5643 dbSNP
rs747753790 5645 dbSNP
rs932467579 5649 dbSNP
rs922460368 5656 dbSNP
rs1040794408 5659 dbSNP
rs1324556605 5662 dbSNP
rs1230502596 5668 dbSNP
rs1339560040 5673 dbSNP
rs1296032756 5676 dbSNP
rs1298153196 5676 dbSNP
rs945129536 5677 dbSNP
rs978419257 5678 dbSNP
rs1346842586 5679 dbSNP
rs1208346292 5682 dbSNP
rs945286714 5690 dbSNP
rs1483310894 5692 dbSNP
rs1375612289 5693 dbSNP
rs1172514811 5694 dbSNP
rs1298502493 5703 dbSNP
rs913555742 5718 dbSNP
rs922940847 5722 dbSNP
rs1412221878 5725 dbSNP
rs1423745879 5727 dbSNP
rs975730690 5731 dbSNP
rs964479576 5744 dbSNP
rs1174256098 5761 dbSNP
rs1361043354 5764 dbSNP
rs1188773958 5768 dbSNP
rs1466626375 5769 dbSNP
rs1017362013 5770 dbSNP
rs985660027 5774 dbSNP
rs1437240191 5778 dbSNP
rs989115695 5783 dbSNP
rs536796115 5794 dbSNP
rs957713029 5805 dbSNP
rs867500324 5813 dbSNP
rs926189760 5817 dbSNP
rs1231753480 5821 dbSNP
rs980771094 5823 dbSNP
rs1027114885 5836 dbSNP
rs970245046 5836 dbSNP
rs184328958 5846 dbSNP
rs1258472556 5853 dbSNP
rs747709997 5854 dbSNP
rs1211146809 5860 dbSNP
rs897392039 5866 dbSNP
rs1014275713 5868 dbSNP
rs961471339 5869 dbSNP
rs1015645416 5874 dbSNP
rs1281256155 5886 dbSNP
rs1427684220 5887 dbSNP
rs1005469721 5895 dbSNP
rs888454858 5899 dbSNP
rs1310493208 5900 dbSNP
rs1028232368 5901 dbSNP
rs774299549 5913 dbSNP
rs773842977 5917 dbSNP
rs1275075143 5923 dbSNP
rs561040380 5926 dbSNP
rs1215080882 5939 dbSNP
rs1317129923 5946 dbSNP
rs532557595 5964 dbSNP
rs1013538640 5974 dbSNP
rs1295133443 5989 dbSNP
rs553484093 5992 dbSNP
rs768195291 5993 dbSNP
rs895270482 5994 dbSNP
rs1330641645 5995 dbSNP
rs997205106 6005 dbSNP
rs1301880460 6014 dbSNP
rs548268376 6016 dbSNP
rs1219999647 6019 dbSNP
rs192816091 6024 dbSNP
rs903700766 6031 dbSNP
rs1176861498 6032 dbSNP
rs1042192582 6034 dbSNP
rs1473617256 6038 dbSNP
rs1159932224 6040 dbSNP
rs945313267 6042 dbSNP
rs1173238804 6062 dbSNP
rs923163737 6064 dbSNP
rs1041303723 6069 dbSNP
rs1466616111 6087 dbSNP
rs1350272318 6088 dbSNP
rs945203108 6089 dbSNP
rs975784486 6095 dbSNP
rs1305797521 6109 dbSNP
rs13431701 6120 dbSNP
rs910185675 6123 dbSNP
rs565102823 6130 dbSNP
rs572522076 6132 dbSNP
rs1476362790 6153 dbSNP
rs1352985070 6158 dbSNP
rs188706367 6160 dbSNP
rs1292586903 6166 dbSNP
rs1322733576 6170 dbSNP
rs1204185595 6175 dbSNP
rs1053537982 6185 dbSNP
rs1181464249 6187 dbSNP
rs1484194334 6188 dbSNP
rs936290821 6196 dbSNP
rs926317938 6198 dbSNP
rs980379472 6199 dbSNP
rs533661735 6202 dbSNP
rs779733822 6203 dbSNP
rs558442164 6207 dbSNP
rs1409167561 6208 dbSNP
rs36049218 6215 dbSNP
rs992928291 6221 dbSNP
rs1372170976 6222 dbSNP
rs1430045470 6223 dbSNP
rs961527273 6230 dbSNP
rs972908110 6240 dbSNP
rs1449531912 6242 dbSNP
rs755897159 6253 dbSNP
rs564552894 6254 dbSNP
rs1228297578 6259 dbSNP
rs1234963242 6266 dbSNP
rs1295952479 6277 dbSNP
rs745618356 6285 dbSNP
rs781327605 6287 dbSNP
rs538857657 6297 dbSNP
rs1033619217 6302 dbSNP
rs751755898 6311 dbSNP
rs764203259 6312 dbSNP
rs1475080892 6318 dbSNP
rs903921731 6318 dbSNP
rs1186560529 6331 dbSNP
rs1391834682 6334 dbSNP
rs530968890 6335 dbSNP
rs1042635232 6344 dbSNP
rs1422540055 6351 dbSNP
rs1415697303 6355 dbSNP
rs1334311456 6360 dbSNP
rs1344090614 6362 dbSNP
rs576244242 6367 dbSNP
rs1435068715 6378 dbSNP
rs996761974 6380 dbSNP
rs1400240088 6386 dbSNP
rs1329880177 6393 dbSNP
rs1463380319 6396 dbSNP
rs1343205925 6398 dbSNP
rs1009399260 6405 dbSNP
rs779844206 6407 dbSNP
rs1164415080 6411 dbSNP
rs1446477670 6416 dbSNP
rs868025566 6417 dbSNP
rs1422296325 6444 dbSNP
rs374498971 6447 dbSNP
rs756267289 6451 dbSNP
rs1465187295 6455 dbSNP
rs1019544564 6461 dbSNP
rs901794581 6463 dbSNP
rs1244753377 6469 dbSNP
rs1478845224 6470 dbSNP
rs1177881770 6484 dbSNP
rs1040321191 6490 dbSNP
rs1406675890 6509 dbSNP
rs1457357005 6515 dbSNP
rs1157590114 6516 dbSNP
rs534648752 6516 dbSNP
rs796147932 6516 dbSNP
rs1236330517 6521 dbSNP
rs1009365584 6526 dbSNP
rs910238041 6527 dbSNP
rs1275611413 6534 dbSNP
rs1048710627 6535 dbSNP
rs930412866 6539 dbSNP
rs892314899 6545 dbSNP
rs919012618 6553 dbSNP
rs973347244 6558 dbSNP
rs961534790 6568 dbSNP
rs1468796175 6585 dbSNP
rs1265056191 6594 dbSNP
rs1264654550 6602 dbSNP
rs1199162972 6608 dbSNP
rs1219031543 6609 dbSNP
rs1231883761 6613 dbSNP
rs918047771 6619 dbSNP
rs1307204852 6629 dbSNP
rs758564616 6638 dbSNP
rs79164160 6640 dbSNP
rs541891961 6642 dbSNP
rs1458264976 6643 dbSNP
rs904839501 6647 dbSNP
rs1045159183 6653 dbSNP
rs949094323 6654 dbSNP
rs1163163451 6658 dbSNP
rs1389052909 6660 dbSNP
rs917467078 6668 dbSNP
rs993047625 6669 dbSNP
rs184612407 6672 dbSNP
rs1033668139 6681 dbSNP
rs75582562 6681 dbSNP
rs968575419 6681 dbSNP
rs1351151752 6682 dbSNP
rs1244040198 6686 dbSNP
rs1021028948 6691 dbSNP
rs759988086 6700 dbSNP
rs1443733879 6701 dbSNP
rs1273630634 6708 dbSNP
rs1481905779 6715 dbSNP
rs1010031635 6720 dbSNP
rs901678760 6722 dbSNP
rs776961820 6725 dbSNP
rs1347228299 6729 dbSNP
rs952935174 6734 dbSNP
rs1473986632 6737 dbSNP
rs1028418838 6747 dbSNP
rs1164259236 6754 dbSNP
rs757495920 6761 dbSNP
rs975793178 6765 dbSNP
rs1007510650 6766 dbSNP
rs1159446510 6786 dbSNP
rs766934231 6791 dbSNP
rs965407415 6794 dbSNP
rs1395490826 6797 dbSNP
rs1019510731 6798 dbSNP
rs1439238964 6802 dbSNP
rs1378540132 6804 dbSNP
rs1195516818 6809 dbSNP
rs1245418497 6809 dbSNP
rs1296646306 6810 dbSNP
rs34337821 6825 dbSNP
rs1433706159 6843 dbSNP
rs889018410 6846 dbSNP
rs1009524019 6848 dbSNP
rs1274832291 6851 dbSNP
rs1049244145 6852 dbSNP
rs1198180959 6856 dbSNP
rs545804600 6863 dbSNP
rs956525047 6870 dbSNP
rs1444672995 6885 dbSNP
rs1184746403 6887 dbSNP
rs1032202716 6904 dbSNP
rs918885896 6905 dbSNP
rs1036116950 6922 dbSNP
rs1390971709 6926 dbSNP
rs918101427 6926 dbSNP
rs949782796 6926 dbSNP
rs1404440193 6929 dbSNP
rs1396597325 6930 dbSNP
rs577061637 6930 dbSNP
rs140888636 6941 dbSNP
rs1260984517 6942 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 3'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugcccacgcUAAAGACACACUCu 5'
                   :| | |||||| | 
Target 5' --------tGTATGTGTGTGTGt 3'
 		1 - 15
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE26953 Aortic valvular endothelial cells 0.634 4.4e-4 0.656 2.5e-4 24 Click to see details
GSE19536 Breast cancer -0.238 8.6e-3 -0.279 2.5e-3 100 Click to see details
GSE19783 ER- ER- breast cancer -0.243 1.5e-2 -0.323 1.8e-3 79 Click to see details
GSE21032 Prostate cancer -0.218 2.4e-2 -0.109 1.6e-1 83 Click to see details
GSE19783 ER+ ER+ breast cancer -0.375 5.2e-2 -0.174 2.3e-1 20 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.319 6.0e-2 0.240 1.2e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.25 8.4e-2 -0.204 1.3e-1 32 Click to see details
GSE17306 Multiple myeloma 0.185 1.0e-1 0.218 6.6e-2 49 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.253 1.1e-1 -0.228 1.4e-1 25 Click to see details
GSE27834 Pluripotent stem cells 0.305 1.3e-1 0.268 1.6e-1 16 Click to see details
GSE21687 Ependynoma primary tumors 0.128 1.6e-1 0.170 9.0e-2 64 Click to see details
GSE19350 CNS germ cell tumors -0.266 2.0e-1 -0.344 1.4e-1 12 Click to see details
GSE28260 Renal cortex and medulla -0.217 2.4e-1 -0.374 1.0e-1 13 Click to see details
GSE38226 Liver fibrosis 0.16 2.4e-1 -0.033 4.4e-1 21 Click to see details
GSE28544 Breast cancer 0.136 2.6e-1 0.107 3.1e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells 0.136 2.7e-1 0.219 1.6e-1 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.103 3.3e-1 0.150 2.6e-1 20 Click to see details
GSE21849 B cell lymphoma -0.08 3.4e-1 0.362 2.7e-2 29 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.053 4.5e-1 0.000 5.0e-1 9 Click to see details
GSE14794 Lymphoblastoid cells 0.001 5.0e-1 -0.029 3.9e-1 90 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC 0.357 0 0.334 0 68 Click to see details
HNSC -0.373 0.01 -0.285 0.03 42 Click to see details
STAD -0.311 0.04 -0.197 0.14 32 Click to see details
CHOL 0.549 0.06 0.433 0.12 9 Click to see details
ESCA 0.487 0.06 0.491 0.06 11 Click to see details
KICH 0.312 0.06 0.244 0.12 25 Click to see details
KIRP 0.262 0.07 0.192 0.15 32 Click to see details
BLCA -0.313 0.1 -0.420 0.04 18 Click to see details
PCPG 0.948 0.1 1.000 0.5 3 Click to see details
BRCA -0.125 0.13 -0.074 0.25 84 Click to see details
CESC -0.858 0.17 -1.000 0.5 3 Click to see details
LUSC -0.158 0.17 -0.163 0.16 38 Click to see details
PRAD -0.096 0.25 -0.090 0.27 50 Click to see details
LUAD 0.192 0.27 0.252 0.21 12 Click to see details
UCEC -0.125 0.31 -0.081 0.37 19 Click to see details
LIHC 0.05 0.37 0.159 0.14 49 Click to see details
THCA -0.033 0.4 -0.131 0.16 59 Click to see details
COAD -0.031 0.47 -0.119 0.39 8 Click to see details
PAAD 0.007 0.5 -0.200 0.4 4 Click to see details
PAAD 0.007 0.5 -0.200 0.4 4 Click to see details
PAAD 0.007 0.5 -0.200 0.4 4 Click to see details
303 hsa-miR-342-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005881 GEMIN4 gem nuclear organelle associated protein 4 4 3
MIRT005882 BMP7 bone morphogenetic protein 7 2 1
MIRT006443 DNMT1 DNA methyltransferase 1 3 1
MIRT043661 TMEM98 transmembrane protein 98 1 1
MIRT043662 IDH3B isocitrate dehydrogenase 3 (NAD(+)) beta 1 1
MIRT043663 KPNA2 karyopherin subunit alpha 2 1 1
MIRT043664 PRKCE protein kinase C epsilon 1 1
MIRT043665 TRMT61A tRNA methyltransferase 61A 1 1
MIRT043666 ZNF766 zinc finger protein 766 1 1
MIRT043667 FIGN fidgetin, microtubule severing factor 1 1
MIRT043668 FIBP FGF1 intracellular binding protein 1 1
MIRT043669 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1 1
MIRT043670 KCTD15 potassium channel tetramerization domain containing 15 1 1
MIRT043671 RPS3A ribosomal protein S3A 1 1
MIRT043672 NCAN neurocan 1 1
MIRT043673 SLC6A12 solute carrier family 6 member 12 1 1
MIRT043674 RPS9 ribosomal protein S9 1 1
MIRT043675 ATXN7 ataxin 7 1 1
MIRT043676 ISOC2 isochorismatase domain containing 2 1 1
MIRT043677 CRB2 crumbs 2, cell polarity complex component 2 3
MIRT043678 PPIE peptidylprolyl isomerase E 1 1
MIRT043679 PSAT1 phosphoserine aminotransferase 1 1 1
MIRT043680 GJA1 gap junction protein alpha 1 1 1
MIRT043681 CANX calnexin 1 1
MIRT043682 NOP2 NOP2 nucleolar protein 1 1
MIRT043683 VAPB VAMP associated protein B and C 1 1
MIRT043684 ATF4 activating transcription factor 4 1 1
MIRT043685 BPTF bromodomain PHD finger transcription factor 1 1
MIRT043686 RPL26 ribosomal protein L26 1 1
MIRT043687 NGRN neugrin, neurite outgrowth associated 1 1
MIRT043688 TNS3 tensin 3 2 3
MIRT043689 RPL15 ribosomal protein L15 1 1
MIRT043690 FN3KRP fructosamine 3 kinase related protein 1 1
MIRT043691 METTL2A methyltransferase like 2A 1 1
MIRT043692 VPS35 VPS35, retromer complex component 1 1
MIRT043693 IDS iduronate 2-sulfatase 1 1
MIRT043694 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 1 1
MIRT043695 ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase 1 1
MIRT043696 SLC30A9 solute carrier family 30 member 9 1 1
MIRT043697 RPL27A ribosomal protein L27a 1 1
MIRT043698 GOT2 glutamic-oxaloacetic transaminase 2 1 1
MIRT043699 PRKCSH protein kinase C substrate 80K-H 1 1
MIRT043700 RRM2 ribonucleotide reductase regulatory subunit M2 1 1
MIRT043701 RFX3 regulatory factor X3 1 1
MIRT043702 CCND2 cyclin D2 1 1
MIRT043703 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT043704 ZNF430 zinc finger protein 430 1 1
MIRT043705 NAPG NSF attachment protein gamma 1 1
MIRT043706 GTF2H2C GTF2H2 family member C 1 1
MIRT043707 FAM3C family with sequence similarity 3 member C 1 1
MIRT043708 PWP2 PWP2, small subunit processome component 1 1
MIRT043709 PTRF caveolae associated protein 1 2 3
MIRT043710 ZC3H12C zinc finger CCCH-type containing 12C 1 1
MIRT043711 ACTG1 actin gamma 1 1 1
MIRT043712 TRERF1 transcriptional regulating factor 1 2 3
MIRT043713 CBX1 chromobox 1 1 1
MIRT043714 TOMM70A translocase of outer mitochondrial membrane 70 1 1
MIRT043715 ZSCAN29 zinc finger and SCAN domain containing 29 2 3
MIRT043716 NABP2 nucleic acid binding protein 2 1 1
MIRT043717 HARS histidyl-tRNA synthetase 1 1
MIRT043718 INO80D INO80 complex subunit D 1 1
MIRT043719 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 1 1
MIRT043720 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 1 1
MIRT043721 PA2G4 proliferation-associated 2G4 1 1
MIRT043722 STRN striatin 1 1
MIRT043723 CCDC6 coiled-coil domain containing 6 1 1
MIRT043724 EXOSC1 exosome component 1 1 1
MIRT043725 EPB41 erythrocyte membrane protein band 4.1 2 3
MIRT043726 ZFC3H1 zinc finger C3H1-type containing 1 1
MIRT043727 XPOT exportin for tRNA 1 1
MIRT043728 JUN Jun proto-oncogene, AP-1 transcription factor subunit 1 1
MIRT043729 SOD2 superoxide dismutase 2 1 1
MIRT043730 EEF2 eukaryotic translation elongation factor 2 1 1
MIRT043731 TCP1 t-complex 1 1 1
MIRT043732 TCF3 transcription factor 3 1 1
MIRT043733 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1 1
MIRT043734 TRAP1 TNF receptor associated protein 1 1 1
MIRT043735 FOSL2 FOS like 2, AP-1 transcription factor subunit 1 1
MIRT043736 APTX aprataxin 1 1
MIRT043737 SF3B3 splicing factor 3b subunit 3 1 1
MIRT043738 SF3B2 splicing factor 3b subunit 2 1 1
MIRT043739 TACC1 transforming acidic coiled-coil containing protein 1 1 1
MIRT043740 CXADR CXADR, Ig-like cell adhesion molecule 1 1
MIRT054884 ID4 inhibitor of DNA binding 4, HLH protein 3 1
MIRT102908 INSIG1 insulin induced gene 1 2 4
MIRT407297 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT437733 RMND5A required for meiotic nuclear division 5 homolog A 2 1
MIRT437734 SYNPO2L synaptopodin 2 like 2 1
MIRT437735 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 1
MIRT437736 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 1
MIRT437737 C20orf11 GID complex subunit 8 homolog 3 2
MIRT437738 TIAM1 T-cell lymphoma invasion and metastasis 1 2 1
MIRT437783 ANKRD49 ankyrin repeat domain 49 2 1
MIRT438066 SREBF1 sterol regulatory element binding transcription factor 1 3 1
MIRT438067 SREBF2 sterol regulatory element binding transcription factor 2 3 1
MIRT446662 MXI1 MAX interactor 1, dimerization protein 2 4
MIRT451848 TXNDC5 thioredoxin domain containing 5 2 2
MIRT454440 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT457188 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT463394 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT464518 UBXN7 UBX domain protein 7 2 2
MIRT469230 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT472349 NETO2 neuropilin and tolloid like 2 2 2
MIRT503514 USP51 ubiquitin specific peptidase 51 2 6
MIRT510418 ZNF268 zinc finger protein 268 2 4
MIRT511283 KLHL15 kelch like family member 15 2 2
MIRT524562 CALR calreticulin 2 2
MIRT527248 ASB3 ankyrin repeat and SOCS box containing 3 2 2
MIRT528806 RAB32 RAB32, member RAS oncogene family 2 2
MIRT529775 ZNF486 zinc finger protein 486 2 2
MIRT530278 CIRH1A UTP4, small subunit processome component 2 4
MIRT531817 GPR75-ASB3 GPR75-ASB3 readthrough 2 2
MIRT534376 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT534784 RAD23B RAD23 homolog B, nucleotide excision repair protein 2 2
MIRT539662 EID1 EP300 interacting inhibitor of differentiation 1 2 10
MIRT539827 KLF8 Kruppel like factor 8 2 2
MIRT540117 KLF17 Kruppel like factor 17 2 2
MIRT540474 MLLT6 MLLT6, PHD finger containing 2 6
MIRT540605 CD3D CD3d molecule 2 2
MIRT540671 LHFPL3 LHFPL tetraspan subfamily member 3 2 4
MIRT540697 ATG10 autophagy related 10 2 4
MIRT540765 RALGPS1 Ral GEF with PH domain and SH3 binding motif 1 2 4
MIRT541057 SEPHS1 selenophosphate synthetase 1 2 2
MIRT541345 FRMD3 FERM domain containing 3 2 4
MIRT541479 ARF3 ADP ribosylation factor 3 2 6
MIRT541574 SYT5 synaptotagmin 5 2 6
MIRT541714 TMEM33 transmembrane protein 33 2 2
MIRT541893 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT541944 NBPF10 NBPF member 10 2 4
MIRT542038 FAM180B family with sequence similarity 180 member B 2 11
MIRT542120 EPHB3 EPH receptor B3 2 8
MIRT542150 EGR3 early growth response 3 2 4
MIRT547498 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT551163 UBTF upstream binding transcription factor, RNA polymerase I 2 4
MIRT557042 HOXB3 homeobox B3 2 2
MIRT560204 AK4 adenylate kinase 4 2 2
MIRT565953 RRAGD Ras related GTP binding D 2 2
MIRT566178 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT569210 SHC3 SHC adaptor protein 3 2 2
MIRT570179 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT571553 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT572159 DDX3X DEAD-box helicase 3, X-linked 2 2
MIRT572574 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT573183 P2RX3 purinergic receptor P2X 3 2 2
MIRT575398 Zdhhc22 zinc finger, DHHC-type containing 22 2 3
MIRT575406 Rnf152 ring finger protein 152 2 5
MIRT576117 Klf6 Kruppel-like factor 6 2 2
MIRT576239 Rgs4 regulator of G-protein signaling 4 2 3
MIRT576246 Asah2 N-acylsphingosine amidohydrolase 2 2 5
MIRT607088 RNF152 ring finger protein 152 2 7
MIRT607211 ASAH2 N-acylsphingosine amidohydrolase 2 2 7
MIRT607280 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 4
MIRT609144 ZNF610 zinc finger protein 610 2 2
MIRT609878 RAD54L2 RAD54 like 2 2 4
MIRT610080 CRLF1 cytokine receptor like factor 1 2 2
MIRT610223 HDAC9 histone deacetylase 9 2 2
MIRT610232 ACOT9 acyl-CoA thioesterase 9 2 4
MIRT610558 NBPF14 NBPF member 14 2 2
MIRT610699 ZNF548 zinc finger protein 548 2 2
MIRT611213 CLN8 CLN8, transmembrane ER and ERGIC protein 2 6
MIRT611288 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT611307 ZDHHC22 zinc finger DHHC-type containing 22 2 3
MIRT611504 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT611759 PLA2G7 phospholipase A2 group VII 2 6
MIRT611976 ZNF175 zinc finger protein 175 2 2
MIRT612318 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT612387 TCTE1 t-complex-associated-testis-expressed 1 2 8
MIRT612411 SPAG7 sperm associated antigen 7 2 2
MIRT612514 SH3PXD2A SH3 and PX domains 2A 2 4
MIRT612542 RPAP2 RNA polymerase II associated protein 2 2 2
MIRT612812 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT613262 C2orf72 chromosome 2 open reading frame 72 2 4
MIRT613327 ANTXR2 anthrax toxin receptor 2 2 2
MIRT613372 ACVR1B activin A receptor type 1B 2 2
MIRT614341 PVRIG poliovirus receptor related immunoglobulin domain containing 2 4
MIRT614774 SLC41A2 solute carrier family 41 member 2 2 4
MIRT615053 DCAF12 DDB1 and CUL4 associated factor 12 2 2
MIRT615063 CRIM1 cysteine rich transmembrane BMP regulator 1 2 2
MIRT615345 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT615628 F11R F11 receptor 2 4
MIRT615687 ZNF280B zinc finger protein 280B 2 2
MIRT616247 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 4
MIRT616521 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT616579 FAM107A family with sequence similarity 107 member A 2 2
MIRT617567 RPSAP58 ribosomal protein SA pseudogene 58 2 4
MIRT617921 WDR73 WD repeat domain 73 2 2
MIRT618484 SIGLEC15 sialic acid binding Ig like lectin 15 2 2
MIRT618697 KIF13A kinesin family member 13A 2 2
MIRT620429 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT620696 RFTN2 raftlin family member 2 2 2
MIRT622433 NUDT19 nudix hydrolase 19 2 2
MIRT623125 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT623435 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT623633 IGF1R insulin like growth factor 1 receptor 2 2
MIRT623758 GRID1 glutamate ionotropic receptor delta type subunit 1 2 2
MIRT624078 DUSP6 dual specificity phosphatase 6 2 2
MIRT624149 DIAPH1 diaphanous related formin 1 2 2
MIRT625971 PKP1 plakophilin 1 2 2
MIRT626853 IREB2 iron responsive element binding protein 2 2 2
MIRT627799 PXDN peroxidasin 2 2
MIRT628216 FOXJ3 forkhead box J3 2 2
MIRT628728 IKZF3 IKAROS family zinc finger 3 2 2
MIRT628742 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT628913 DARS aspartyl-tRNA synthetase 2 2
MIRT630686 HUNK hormonally up-regulated Neu-associated kinase 2 4
MIRT631701 C1QTNF6 C1q and TNF related 6 2 2
MIRT631987 CLSTN3 calsyntenin 3 2 4
MIRT632221 YME1L1 YME1 like 1 ATPase 2 2
MIRT632387 SLITRK4 SLIT and NTRK like family member 4 2 2
MIRT632429 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT632639 OSMR oncostatin M receptor 2 2
MIRT633415 TMEM120B transmembrane protein 120B 2 2
MIRT634312 SNTN sentan, cilia apical structure protein 2 2
MIRT634424 PHKG2 phosphorylase kinase catalytic subunit gamma 2 2 2
MIRT634486 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT635142 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT637088 SELPLG selectin P ligand 2 2
MIRT637595 PLD6 phospholipase D family member 6 2 2
MIRT637685 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT638438 PLXNA4 plexin A4 2 2
MIRT638660 GGCX gamma-glutamyl carboxylase 2 2
MIRT638775 EMC7 ER membrane protein complex subunit 7 2 2
MIRT638956 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT640594 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT646836 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT648283 TRAPPC2L trafficking protein particle complex 2 like 2 2
MIRT650728 TNFSF8 TNF superfamily member 8 2 2
MIRT652628 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT653036 STRN3 striatin 3 2 2
MIRT655877 NFASC neurofascin 2 2
MIRT656165 MRRF mitochondrial ribosome recycling factor 2 2
MIRT659533 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT659637 CDK6 cyclin dependent kinase 6 2 2
MIRT661112 FPR1 formyl peptide receptor 1 2 2
MIRT661503 EIF1AD eukaryotic translation initiation factor 1A domain containing 2 2
MIRT661660 ZNF623 zinc finger protein 623 2 2
MIRT662095 ZNF419 zinc finger protein 419 2 2
MIRT665496 VAPA VAMP associated protein A 2 2
MIRT665750 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT665777 TMEM236 transmembrane protein 236 2 2
MIRT665952 TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor 2 4
MIRT670473 TMEM105 transmembrane protein 105 2 2
MIRT670999 PTGIS prostaglandin I2 synthase 2 2
MIRT671254 ATP6V0E1 ATPase H+ transporting V0 subunit e1 2 2
MIRT671291 RPL37A ribosomal protein L37a 2 2
MIRT671600 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT671611 C6orf25 megakaryocyte and platelet inhibitory receptor G6b 2 2
MIRT671769 PLA2G4A phospholipase A2 group IVA 2 2
MIRT672458 POU2F3 POU class 2 homeobox 3 2 2
MIRT672625 IGF2R insulin like growth factor 2 receptor 2 4
MIRT672805 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673029 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT674322 POLR1B RNA polymerase I subunit B 2 2
MIRT674576 KIF3A kinesin family member 3A 2 2
MIRT675032 SNX1 sorting nexin 1 2 2
MIRT675155 NDRG1 N-myc downstream regulated 1 2 2
MIRT675211 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT675221 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT678334 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT683473 RGS4 regulator of G protein signaling 4 2 3
MIRT689825 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT697534 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT697709 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT703498 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT704278 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT705829 AIFM2 apoptosis inducing factor, mitochondria associated 2 2 2
MIRT708261 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708690 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT708892 ZNF780A zinc finger protein 780A 2 2
MIRT709317 HMBOX1 homeobox containing 1 2 2
MIRT709582 LETMD1 LETM1 domain containing 1 2 2
MIRT710166 MTRF1L mitochondrial translational release factor 1 like 2 2
MIRT711301 ACOX1 acyl-CoA oxidase 1 2 2
MIRT711508 ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1 2 2
MIRT711644 LIPG lipase G, endothelial type 2 2
MIRT711758 CCDC59 coiled-coil domain containing 59 2 2
MIRT712005 F9 coagulation factor IX 2 2
MIRT712260 PTPRN2 protein tyrosine phosphatase, receptor type N2 2 2
MIRT712796 KCTD16 potassium channel tetramerization domain containing 16 2 2
MIRT714112 TMED9 transmembrane p24 trafficking protein 9 2 2
MIRT714533 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT714569 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 2 2
MIRT714940 ZNF330 zinc finger protein 330 2 2
MIRT715509 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT715573 CYP4F11 cytochrome P450 family 4 subfamily F member 11 2 2
MIRT715977 TFRC transferrin receptor 2 2
MIRT716139 LSAMP limbic system-associated membrane protein 2 2
MIRT720215 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT721332 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT722069 TP53INP2 tumor protein p53 inducible nuclear protein 2 2 2
MIRT722189 DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 2 2
MIRT722969 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723246 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT724116 PKNOX1 PBX/knotted 1 homeobox 1 2 2
MIRT725378 MLXIP MLX interacting protein 2 2
MIRT733613 ANXA2 annexin A2 3 0
MIRT733614 MTOR mechanistic target of rapamycin kinase 3 0
MIRT734786 MAP1LC3B microtubule associated protein 1 light chain 3 beta 3 0
MIRT735433 MAPK1 mitogen-activated protein kinase 1 3 0
MIRT735531 SOX6 SRY-box 6 3 0
MIRT736919 BAG1 BCL2 associated athanogene 1 4 0
MIRT737360 LINC00460 long intergenic non-protein coding RNA 460 3 0
MIRT737361 AGR2 anterior gradient 2, protein disulphide isomerase family member 3 0
miRNA-Drug Associations