pre-miRNA Information
pre-miRNA mmu-mir-690   
Genomic Coordinates chr16: 28599935 - 28600043
Synonyms Mirn690, mmu-mir-690, Mir690
Description Mus musculus miR-690 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA mmu-miR-690
Sequence 83| AAAGGCUAGGCUCACAACCAAA |104
Evidence Experimental
Experiments MPSS
Putative Targets

Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6MEZ5 miR-690 Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Serum Microarray
Gene Information
Gene Symbol Ctnnb1   
Synonyms Bfc, Catnb, Mesc
Description catenin (cadherin associated protein), beta 1
Transcript NM_001165902   
Other Transcripts NM_007614   
Expression
Putative miRNA Targets on Ctnnb1
3'UTR of Ctnnb1
(miRNA target sites are highlighted)
>Ctnnb1|NM_001165902|3'UTR
   1 ATCGTCCTTTAGGTAAGAAAGCTTATAAAAGCCAGTGTGGGTGAATACTTTACTCTGCCTGCAGAACTCCAGAAAGACTT
  81 GGTAGGGTGGGAATGGTTTTAGGCCTGTTTGTAAATCTGCCACCAAACAGATACATACCTTGGAAGGAGATGTTCATGTG
 161 TGGAAGTTTCTCACGTTGATGTTTTTGCCACAGCTTTTGCAGCGTTATACTCAGATGAGTAACATTTGCTGTTTTCAACA
 241 TTAATAGCAGCCTTTCTCTCTATACAGCTGTAGTGTCTGAACGTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCT
 321 CGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAGTCGAAGTACGCT
 401 TTTTGTTCTGGTCCTTTTTGGTCGAGGAGTAACAATACAAATGGATTTGGGGAGTGACTCACGCAGTGAAGAATGCACAC
 481 GAATGGATCACAAGATGGCGTTATCAAACCCTAGCCTTGCTTGTTCTTTGTTTTAATATCTGTAGTGGTGCTGACTTTGC
 561 TTGCTTTTATTTTTTGCAGTAACTGTTAGTTTTTAAGTAGTGTTATGTTCTAGTGAACCTGCTACAGCAATTTCTGATTT
 641 CTAAGAACCGAGTAATGGTGTAGAACACTAATTCATAATCACGCTAATTGTAATCTGGAGACGTGTAACATTGTGTAGCC
 721 TTTTGTATAAATAGACAGATAGAAATGGTCCGATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTC
 801 ATGTTTTTGAACAAAAACTTTATCGGGGATACGTGCGGTAGGGTAAATCAGTAAGAGGTGTTATTTGAGCCTTGTTTTGG
 881 ACAGTATACCAGTTGCCTTTTATCCCAAAGTTGTTGTAACCTGCTGTGATACAATGCTTCAACAGATGCGGTTATAGAAA
 961 TGGTTCAGAATTAAACTTTTAATTCATTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaacCAACA--CUCGGAUCGGAAa 5'
              ||| |   | ||||||||| 
Target 5' tggcGTTATCAAACCCTAGCCTTg 3'
496 - 519 156.00 -13.20
2
miRNA  3' aaaccAACACUCGGAUCGGAAa 5'
               |||||    ||||||| 
Target 5' taacaTTGTG----TAGCCTTt 3'
706 - 723 151.00 -11.50
3
miRNA  3' aaacCAACACUCGGAUCGGAAa 5'
              | ||| | :: |||||| 
Target 5' aagaGGTGTTATTTGAGCCTTg 3'
853 - 874 126.00 -11.29
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions NIH3T3
Location of target site 3'UTR
Tools used in this research unspecified
Original Description (Extracted from the article) ... Ectopic expression of the 3'UTR promoted wound healing by regulating a number of miRNAs that not only targeted versican but also shared target sites with the 3'UTR of 脦虏-catenin ...

- Yang W; Yee AJ, 2014, Biochimica et biophysica acta.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaaccAACACUCGGAUCGGAAa 5'
               |||||    ||||||| 
Target 5' taacaTTGTG----TAGCCTTt 3'
13 - 30
Article - Yang W; Yee AJ
- Biochimica et biophysica acta, 2014
Versican is an extracellular chondroitin sulfate proteoglycan which functions as a structural molecule but can also regulate a variety of cellular activities. This study was designed to explore the roles of versican in the process of dermal wound repair. To elevate levels of versican, we ectopically expressed the versican 3'-untranslated region (3'UTR) as a competitive endogenous RNA to modulate expression of versican. We demonstrated that wounds closed faster in transgenic mice expressing the versican 3'UTR, as compared to those in wildtype mice. We stably expressed versican 3'UTR in NIH3T3 fibroblasts and found that the 3'UTR-transfected cells showed increased migratory capacity relative to vector-transfected cells. Interestingly, we found that the 3'UTRs of versican and beta-catenin shared common microRNAs (miRNAs) including miR-185, miR-203*, miR-690, miR-680, and miR-434-3p. Luciferase assays showed that all of these miRNAs could target the 3'UTRs of both versican and beta-catenin, when the luciferase constructs contained fragments harboring the miRNA binding sites. As a consequence, expression of both versican and beta-catenin was up-regulated, which was confirmed in vitro and in vivo. Transfection with small interfering RNAs (siRNAs) targeting the versican 3'UTR abolished the 3'UTR's effects on cell migration and invasion. Taken together, these results demonstrate that versican plays important roles in wound repair and that versican messenger RNAs (mRNAs) could compete with endogenous RNAs for regulating miRNA functions.
LinkOut: [PMID: 24594381]
29 mmu-miR-690 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054611 Vcan versican 3 1
MIRT054612 Ctnnb1 catenin (cadherin associated protein), beta 1 3 1
MIRT438463 Cebpe CCAAT/enhancer binding protein (C/EBP), epsilon 2 1
MIRT580328 Tnrc6a trinucleotide repeat containing 6a 2 2
MIRT587416 Dnase2a deoxyribonuclease II alpha 2 4
MIRT588924 Shroom3 shroom family member 3 2 2
MIRT593056 Madd MAP-kinase activating death domain 2 2
MIRT593335 Cebpa CCAAT/enhancer binding protein (C/EBP), alpha 2 2
MIRT593667 Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 2 2
MIRT594943 Fnta farnesyltransferase, CAAX box, alpha 2 2
MIRT595735 Apcdd1 adenomatosis polyposis coli down-regulated 1 2 2
MIRT596853 Ttc26 tetratricopeptide repeat domain 26 2 2
MIRT596914 Trim27 tripartite motif-containing 27 2 2
MIRT597246 Slc39a1 solute carrier family 39 (zinc transporter), member 1 2 2
MIRT597547 Ranbp3l RAN binding protein 3-like 2 2
MIRT600400 Sgms2 sphingomyelin synthase 2 2 2
MIRT600700 Lpp LIM domain containing preferred translocation partner in lipoma 2 2
MIRT600812 Gpcpd1 glycerophosphocholine phosphodiesterase 1 2 2
MIRT601006 Cst6 cystatin E/M 2 2
MIRT601281 2010107G23Rik RIKEN cDNA 2010107G23 gene 2 2
MIRT601474 Tnfaip6 tumor necrosis factor alpha induced protein 6 2 2
MIRT601744 Rbm34 RNA binding motif protein 34 2 2
MIRT603545 Ptchd2 dispatched RND transporter family member 3 2 2
MIRT603901 Htr5a 5-hydroxytryptamine (serotonin) receptor 5A 2 2
MIRT605244 Soga1 suppressor of glucose, autophagy associated 1 1 1
MIRT605502 Siglece sialic acid binding Ig-like lectin E 2 2
MIRT605746 Fgfr1 fibroblast growth factor receptor 1 2 2
MIRT735810 Map2k3 mitogen-activated protein kinase kinase 3 2 0
MIRT735811 Map3k7 mitogen-activated protein kinase kinase kinase 7 2 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-690 Glucose NULL 5793 Microarray pancreatic {beta} cells 19096044 2009 down-regulated
miR-690 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-690 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse liver 19270793 2009 up-regulated
miR-690 Phenethyl isothiocyanate(PEITC) NULL 16741 Microarray neonatal mice liver 20145010 2010 up-regulated
miR-690 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated

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