pre-miRNA Information | |
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pre-miRNA | mmu-mir-690 |
Genomic Coordinates | chr16: 28599935 - 28600043 |
Synonyms | Mirn690, mmu-mir-690, Mir690 |
Description | Mus musculus miR-690 stem-loop |
Comment | None |
RNA Secondary Structure |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-690 |
Sequence | 83| AAAGGCUAGGCUCACAACCAAA |104 |
Evidence | Experimental |
Experiments | MPSS |
Putative Targets |
Biomarker Information |
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Gene Information | |||||||||||||||||||||
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Gene Symbol | Ctnnb1 | ||||||||||||||||||||
Synonyms | Bfc, Catnb, Mesc | ||||||||||||||||||||
Description | catenin (cadherin associated protein), beta 1 | ||||||||||||||||||||
Transcript | NM_001165902 | ||||||||||||||||||||
Other Transcripts | NM_007614 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Ctnnb1 | |||||||||||||||||||||
3'UTR of Ctnnb1 (miRNA target sites are highlighted) |
>Ctnnb1|NM_001165902|3'UTR 1 ATCGTCCTTTAGGTAAGAAAGCTTATAAAAGCCAGTGTGGGTGAATACTTTACTCTGCCTGCAGAACTCCAGAAAGACTT 81 GGTAGGGTGGGAATGGTTTTAGGCCTGTTTGTAAATCTGCCACCAAACAGATACATACCTTGGAAGGAGATGTTCATGTG 161 TGGAAGTTTCTCACGTTGATGTTTTTGCCACAGCTTTTGCAGCGTTATACTCAGATGAGTAACATTTGCTGTTTTCAACA 241 TTAATAGCAGCCTTTCTCTCTATACAGCTGTAGTGTCTGAACGTGCATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCT 321 CGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGACACACTAACCAAGCTGAGTTTCCTATGGGAACAGTCGAAGTACGCT 401 TTTTGTTCTGGTCCTTTTTGGTCGAGGAGTAACAATACAAATGGATTTGGGGAGTGACTCACGCAGTGAAGAATGCACAC 481 GAATGGATCACAAGATGGCGTTATCAAACCCTAGCCTTGCTTGTTCTTTGTTTTAATATCTGTAGTGGTGCTGACTTTGC 561 TTGCTTTTATTTTTTGCAGTAACTGTTAGTTTTTAAGTAGTGTTATGTTCTAGTGAACCTGCTACAGCAATTTCTGATTT 641 CTAAGAACCGAGTAATGGTGTAGAACACTAATTCATAATCACGCTAATTGTAATCTGGAGACGTGTAACATTGTGTAGCC 721 TTTTGTATAAATAGACAGATAGAAATGGTCCGATTAGTTTCCTTTTTAATATGCTTAAAATAAGCAGGTGGATCTATTTC 801 ATGTTTTTGAACAAAAACTTTATCGGGGATACGTGCGGTAGGGTAAATCAGTAAGAGGTGTTATTTGAGCCTTGTTTTGG 881 ACAGTATACCAGTTGCCTTTTATCCCAAAGTTGTTGTAACCTGCTGTGATACAATGCTTCAACAGATGCGGTTATAGAAA 961 TGGTTCAGAATTAAACTTTTAATTCATTCAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | NIH3T3 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | unspecified | ||||||
Original Description (Extracted from the article) |
...
Ectopic expression of the 3'UTR promoted wound healing by regulating a number of miRNAs that not only targeted versican but also shared target sites with the 3'UTR of 脦虏-catenin
... - Yang W; Yee AJ, 2014, Biochimica et biophysica acta. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Yang W; Yee AJ - Biochimica et biophysica acta, 2014
Versican is an extracellular chondroitin sulfate proteoglycan which functions as a structural molecule but can also regulate a variety of cellular activities. This study was designed to explore the roles of versican in the process of dermal wound repair. To elevate levels of versican, we ectopically expressed the versican 3'-untranslated region (3'UTR) as a competitive endogenous RNA to modulate expression of versican. We demonstrated that wounds closed faster in transgenic mice expressing the versican 3'UTR, as compared to those in wildtype mice. We stably expressed versican 3'UTR in NIH3T3 fibroblasts and found that the 3'UTR-transfected cells showed increased migratory capacity relative to vector-transfected cells. Interestingly, we found that the 3'UTRs of versican and beta-catenin shared common microRNAs (miRNAs) including miR-185, miR-203*, miR-690, miR-680, and miR-434-3p. Luciferase assays showed that all of these miRNAs could target the 3'UTRs of both versican and beta-catenin, when the luciferase constructs contained fragments harboring the miRNA binding sites. As a consequence, expression of both versican and beta-catenin was up-regulated, which was confirmed in vitro and in vivo. Transfection with small interfering RNAs (siRNAs) targeting the versican 3'UTR abolished the 3'UTR's effects on cell migration and invasion. Taken together, these results demonstrate that versican plays important roles in wound repair and that versican messenger RNAs (mRNAs) could compete with endogenous RNAs for regulating miRNA functions.
LinkOut: [PMID: 24594381]
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29 mmu-miR-690 Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT054611 | Vcan | versican | 3 | 1 | ||||||||
MIRT054612 | Ctnnb1 | catenin (cadherin associated protein), beta 1 | 3 | 1 | ||||||||
MIRT438463 | Cebpe | CCAAT/enhancer binding protein (C/EBP), epsilon | 2 | 1 | ||||||||
MIRT580328 | Tnrc6a | trinucleotide repeat containing 6a | 2 | 2 | ||||||||
MIRT587416 | Dnase2a | deoxyribonuclease II alpha | 2 | 4 | ||||||||
MIRT588924 | Shroom3 | shroom family member 3 | 2 | 2 | ||||||||
MIRT593056 | Madd | MAP-kinase activating death domain | 2 | 2 | ||||||||
MIRT593335 | Cebpa | CCAAT/enhancer binding protein (C/EBP), alpha | 2 | 2 | ||||||||
MIRT593667 | Smarcc1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 | 2 | 2 | ||||||||
MIRT594943 | Fnta | farnesyltransferase, CAAX box, alpha | 2 | 2 | ||||||||
MIRT595735 | Apcdd1 | adenomatosis polyposis coli down-regulated 1 | 2 | 2 | ||||||||
MIRT596853 | Ttc26 | tetratricopeptide repeat domain 26 | 2 | 2 | ||||||||
MIRT596914 | Trim27 | tripartite motif-containing 27 | 2 | 2 | ||||||||
MIRT597246 | Slc39a1 | solute carrier family 39 (zinc transporter), member 1 | 2 | 2 | ||||||||
MIRT597547 | Ranbp3l | RAN binding protein 3-like | 2 | 2 | ||||||||
MIRT600400 | Sgms2 | sphingomyelin synthase 2 | 2 | 2 | ||||||||
MIRT600700 | Lpp | LIM domain containing preferred translocation partner in lipoma | 2 | 2 | ||||||||
MIRT600812 | Gpcpd1 | glycerophosphocholine phosphodiesterase 1 | 2 | 2 | ||||||||
MIRT601006 | Cst6 | cystatin E/M | 2 | 2 | ||||||||
MIRT601281 | 2010107G23Rik | RIKEN cDNA 2010107G23 gene | 2 | 2 | ||||||||
MIRT601474 | Tnfaip6 | tumor necrosis factor alpha induced protein 6 | 2 | 2 | ||||||||
MIRT601744 | Rbm34 | RNA binding motif protein 34 | 2 | 2 | ||||||||
MIRT603545 | Ptchd2 | dispatched RND transporter family member 3 | 2 | 2 | ||||||||
MIRT603901 | Htr5a | 5-hydroxytryptamine (serotonin) receptor 5A | 2 | 2 | ||||||||
MIRT605244 | Soga1 | suppressor of glucose, autophagy associated 1 | 1 | 1 | ||||||||
MIRT605502 | Siglece | sialic acid binding Ig-like lectin E | 2 | 2 | ||||||||
MIRT605746 | Fgfr1 | fibroblast growth factor receptor 1 | 2 | 2 | ||||||||
MIRT735810 | Map2k3 | mitogen-activated protein kinase kinase 3 | 2 | 0 | ||||||||
MIRT735811 | Map3k7 | mitogen-activated protein kinase kinase kinase 7 | 2 | 0 |
miRNA-Drug Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
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