miRTarBase - #MIRT055360


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pre-miRNA Information
pre-miRNA hsa-mir-548c   
Genomic Coordinates chr12: 64622509 - 64622605
Description Homo sapiens miR-548c stem-loop
Comment Extensive cloning studies suggest that the 5' miRNA may be the predominant one .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-548c-3p
Sequence 61| CAAAAAUCUCAAUUACUUUUGC |82
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23013696 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396767933 3 dbSNP
rs1314622460 7 dbSNP
rs1226739912 9 dbSNP
rs780547012 11 dbSNP
rs747421587 12 dbSNP
rs1298302643 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PDCD4   
Synonyms H731
Description programmed cell death 4
Transcript NM_014456   
Other Transcripts NM_145341   
Expression
Putative miRNA Targets on PDCD4
3'UTR of PDCD4
(miRNA target sites are highlighted)		 
>PDCD4|NM_014456|3'UTR
   1 ATATAAGAACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTT
  81 TTTTTTTTTTAAGCACTTGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGG
 161 AAATGTTTTTTCTTTTTTTTTTGTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCT
 241 AATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCTAATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTT
 321 CTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAA
 401 ACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGTTATTTCTTTGTCTTAAAGAATTT
 481 TTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAGACAGTTAAGTAAA
 561 AGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAACAT
 641 GTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAAT
 721 CTCATAAGGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAA
 801 GTGAAAAATACAATAGTAAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTA
 881 GAGCTTAATTAAGTTTTAGAAATATGTAATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAA
 961 TGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTGACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAA
1041 AGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGCAAGGCCTCAACGTCTGTGCTAATTTAAACTGCC
1121 AAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGGAGTATACTGCTTACAGGTTTAGA
1201 TATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCATATTACCTCAGCTT
1281 ATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCTTAA
1361 AATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGT
1441 GGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGA
1521 CCAACATGAAGAAACCCTGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACT
1601 TGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTT
1681 TGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATC
1761 TGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGTTAAAAAATTTTGTTTTTTAATTACGTAATGTAA
1841 AAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATTTAATAAACATGTAAAGATCCTCTGTAAA
1921 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUUUUCAUUAACU------CUAAAAAc 5'
            |||:||:: ||:       |||||| 
Target 5' taAAAGGTGGCTGGAACATCTATTTTTc 3'
 557 - 584 126.00 -5.95
2 
miRNA  3' cguuuucaUUAACUCUAAAaac 5'
                  || ||||||||   
Target 5' tttcttaaAAATGAGATTTaag 3'
 1406 - 1427 122.00 -6.00
3 
miRNA  3' cgUUUUCAUU-----AAC------UCUAAAAAc 5'
            :||||| |     |||      ||| |||| 
Target 5' aaGAAAGTTATTTCTTTGTCTTAAAGAATTTTt 3'
 450 - 482 122.00 -5.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30513930 41 COSMIC
COSN20077120 61 COSMIC
COSN31586225 62 COSMIC
COSN20107546 90 COSMIC
COSN20077167 91 COSMIC
COSN1112386 124 COSMIC
COSN31586717 163 COSMIC
COSN29083098 183 COSMIC
COSN6056641 348 COSMIC
COSN31589683 369 COSMIC
COSN1112388 373 COSMIC
COSN31577787 380 COSMIC
COSN31569900 453 COSMIC
COSN31534635 476 COSMIC
COSN8149300 579 COSMIC
COSN27555657 1066 COSMIC
COSN6056642 1123 COSMIC
COSN29854732 1331 COSMIC
COSN1471208 1485 COSMIC
COSN20788217 1516 COSMIC
COSN8149301 1520 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780773533 1 dbSNP
rs192041921 4 dbSNP
rs372012361 5 dbSNP
rs1274530692 8 dbSNP
rs780271274 11 dbSNP
rs1461423681 13 dbSNP
rs749729920 14 dbSNP
rs1252920446 16 dbSNP
rs201739274 17 dbSNP
rs774971106 25 dbSNP
rs748132091 28 dbSNP
rs773643180 28 dbSNP
rs1235425484 29 dbSNP
rs1473481400 31 dbSNP
rs1034503022 32 dbSNP
rs1389478794 33 dbSNP
rs12263197 36 dbSNP
rs1427668941 37 dbSNP
rs376964203 40 dbSNP
rs760994347 41 dbSNP
rs1293533284 50 dbSNP
rs766763981 52 dbSNP
rs1177722312 54 dbSNP
rs1481462408 57 dbSNP
rs945794629 59 dbSNP
rs1254056882 60 dbSNP
rs775140901 61 dbSNP
rs762843302 63 dbSNP
rs763911359 65 dbSNP
rs1296880355 66 dbSNP
rs751537495 68 dbSNP
rs1491521147 70 dbSNP
rs759575771 70 dbSNP
rs761257424 70 dbSNP
rs771292422 70 dbSNP
rs1375667883 71 dbSNP
rs397716645 71 dbSNP
rs5787876 71 dbSNP
rs763160233 71 dbSNP
rs775747835 71 dbSNP
rs776805156 71 dbSNP
rs977086596 71 dbSNP
rs1175129960 74 dbSNP
rs767018039 75 dbSNP
rs750018222 76 dbSNP
rs1344721798 79 dbSNP
rs779798593 81 dbSNP
rs1014210812 87 dbSNP
rs1186940826 91 dbSNP
rs1276051599 91 dbSNP
rs1489992836 91 dbSNP
rs757243971 91 dbSNP
rs1222273709 92 dbSNP
rs1269984987 97 dbSNP
rs1002808943 100 dbSNP
rs749594671 103 dbSNP
rs1192500325 105 dbSNP
rs755392885 106 dbSNP
rs1427468584 107 dbSNP
rs779252577 110 dbSNP
rs1170528262 112 dbSNP
rs556498033 114 dbSNP
rs577882072 115 dbSNP
rs1311283326 130 dbSNP
rs72819730 134 dbSNP
rs1032781331 139 dbSNP
rs1314276292 146 dbSNP
rs1397780523 148 dbSNP
rs1383835412 152 dbSNP
rs554044351 153 dbSNP
rs373862908 158 dbSNP
rs749268636 160 dbSNP
rs1366639391 161 dbSNP
rs1164132811 163 dbSNP
rs1475380272 166 dbSNP
rs1010397344 167 dbSNP
rs1190280165 169 dbSNP
rs1205781530 173 dbSNP
rs1261363981 173 dbSNP
rs138010548 173 dbSNP
rs1486930275 173 dbSNP
rs550230568 173 dbSNP
rs1213640065 180 dbSNP
rs1052550 182 dbSNP
rs1421546024 183 dbSNP
rs1225757702 184 dbSNP
rs966695346 184 dbSNP
rs543153032 190 dbSNP
rs976398998 191 dbSNP
rs1418147360 201 dbSNP
rs1387967989 207 dbSNP
rs12248739 215 dbSNP
rs1167597601 219 dbSNP
rs548643783 219 dbSNP
rs1396652128 220 dbSNP
rs1168248170 240 dbSNP
rs953420949 242 dbSNP
rs1461752056 244 dbSNP
rs1194177840 249 dbSNP
rs1299250990 257 dbSNP
rs1251247168 258 dbSNP
rs1399213623 261 dbSNP
rs1469284066 263 dbSNP
rs1394389347 268 dbSNP
rs146211346 270 dbSNP
rs1339142667 276 dbSNP
rs1251468960 285 dbSNP
rs529863924 287 dbSNP
rs1229185213 293 dbSNP
rs921091660 294 dbSNP
rs768075579 298 dbSNP
rs61469604 303 dbSNP
rs940800810 309 dbSNP
rs1306720036 310 dbSNP
rs756545115 311 dbSNP
rs1409090372 323 dbSNP
rs1396971995 332 dbSNP
rs1168667096 333 dbSNP
rs1463689523 335 dbSNP
rs368483051 336 dbSNP
rs746143494 364 dbSNP
rs1454815676 365 dbSNP
rs1255365411 369 dbSNP
rs1036344767 374 dbSNP
rs1209586899 379 dbSNP
rs1437561198 380 dbSNP
rs1257563402 382 dbSNP
rs1345268277 386 dbSNP
rs1476020013 387 dbSNP
rs1191038232 388 dbSNP
rs1279237536 398 dbSNP
rs1394888963 406 dbSNP
rs899189743 408 dbSNP
rs1349430458 409 dbSNP
rs1277645062 419 dbSNP
rs1336314793 420 dbSNP
rs1441424023 420 dbSNP
rs1330610619 425 dbSNP
rs1373862892 431 dbSNP
rs995078972 442 dbSNP
rs1435356761 448 dbSNP
rs1396989471 451 dbSNP
rs1157300179 460 dbSNP
rs72819732 470 dbSNP
rs905502907 476 dbSNP
rs958946663 476 dbSNP
rs11548764 485 dbSNP
rs1184412616 489 dbSNP
rs1171507735 501 dbSNP
rs1375338553 502 dbSNP
rs1256289038 504 dbSNP
rs1433368499 506 dbSNP
rs796971952 518 dbSNP
rs1376130997 519 dbSNP
rs1281481400 520 dbSNP
rs1054152305 524 dbSNP
rs1351290183 531 dbSNP
rs1416634506 540 dbSNP
rs1231152880 548 dbSNP
rs1354595918 550 dbSNP
rs1312449120 557 dbSNP
rs1361159956 560 dbSNP
rs1415660391 560 dbSNP
rs1316288062 569 dbSNP
rs1400255863 574 dbSNP
rs892875475 579 dbSNP
rs1162010579 587 dbSNP
rs1010030514 588 dbSNP
rs1361479457 599 dbSNP
rs1214962786 606 dbSNP
rs1297423318 610 dbSNP
rs1020458751 613 dbSNP
rs1240057210 614 dbSNP
rs1214449027 619 dbSNP
rs1447082126 619 dbSNP
rs1286187826 621 dbSNP
rs1211765099 626 dbSNP
rs1467628372 629 dbSNP
rs1333829858 635 dbSNP
rs759553259 639 dbSNP
rs1233463322 641 dbSNP
rs1381601649 646 dbSNP
rs1280489142 647 dbSNP
rs998150940 650 dbSNP
rs1268710457 659 dbSNP
rs1430030649 662 dbSNP
rs1486371655 672 dbSNP
rs1029257908 674 dbSNP
rs1323085965 677 dbSNP
rs1460370318 681 dbSNP
rs1394452365 686 dbSNP
rs953785133 691 dbSNP
rs1407499706 711 dbSNP
rs1416863901 713 dbSNP
rs984736615 716 dbSNP
rs1024492157 718 dbSNP
rs1016256413 725 dbSNP
rs761358804 727 dbSNP
rs967132003 729 dbSNP
rs532537004 734 dbSNP
rs139237079 738 dbSNP
rs972129810 745 dbSNP
rs1173577363 746 dbSNP
rs565963166 750 dbSNP
rs1214233230 758 dbSNP
rs957299247 762 dbSNP
rs866368294 765 dbSNP
rs1299886324 770 dbSNP
rs975301420 775 dbSNP
rs1438870762 778 dbSNP
rs949933576 778 dbSNP
rs1436694386 782 dbSNP
rs1353143165 786 dbSNP
rs1169261968 787 dbSNP
rs1156949087 790 dbSNP
rs921142646 791 dbSNP
rs1391686042 793 dbSNP
rs1171185490 804 dbSNP
rs1453342679 810 dbSNP
rs933920544 814 dbSNP
rs1253476559 815 dbSNP
rs1192866878 825 dbSNP
rs981737163 826 dbSNP
rs1431710867 829 dbSNP
rs1205013967 834 dbSNP
rs1050859596 839 dbSNP
rs56875008 858 dbSNP
rs1232087130 860 dbSNP
rs940770586 862 dbSNP
rs1347260445 865 dbSNP
rs1439811981 872 dbSNP
rs1304743483 877 dbSNP
rs1304112024 878 dbSNP
rs1389067216 879 dbSNP
rs1054121612 885 dbSNP
rs1297941842 888 dbSNP
rs376183497 890 dbSNP
rs72377323 890 dbSNP
rs747522218 890 dbSNP
rs549069926 894 dbSNP
rs1036886771 901 dbSNP
rs1237391718 919 dbSNP
rs1310703143 926 dbSNP
rs899161298 927 dbSNP
rs1433500110 932 dbSNP
rs1395185722 950 dbSNP
rs373508013 960 dbSNP
rs1407235544 961 dbSNP
rs1417208347 961 dbSNP
rs994799070 962 dbSNP
rs531826405 968 dbSNP
rs1282905790 970 dbSNP
rs1317214605 977 dbSNP
rs796147119 981 dbSNP
rs1244565042 986 dbSNP
rs1485361887 990 dbSNP
rs1341930842 995 dbSNP
rs1256632329 1007 dbSNP
rs1041503944 1008 dbSNP
rs901977228 1011 dbSNP
rs571420900 1013 dbSNP
rs894701212 1014 dbSNP
rs1413826408 1019 dbSNP
rs537866454 1029 dbSNP
rs1269091786 1039 dbSNP
rs1304061122 1039 dbSNP
rs1344463009 1043 dbSNP
rs1175594613 1050 dbSNP
rs1014533843 1059 dbSNP
rs1415433303 1061 dbSNP
rs1473421423 1061 dbSNP
rs1407340708 1067 dbSNP
rs796343911 1072 dbSNP
rs1257198173 1073 dbSNP
rs1202245029 1076 dbSNP
rs1484937899 1078 dbSNP
rs1315592630 1080 dbSNP
rs367711802 1080 dbSNP
rs568306693 1080 dbSNP
rs1331622994 1081 dbSNP
rs962020555 1097 dbSNP
rs745440231 1098 dbSNP
rs972098737 1099 dbSNP
rs1355688308 1100 dbSNP
rs1314431931 1105 dbSNP
rs1161567474 1106 dbSNP
rs967980002 1109 dbSNP
rs1379965358 1111 dbSNP
rs2146544 1119 dbSNP
rs143977617 1132 dbSNP
rs1392260035 1141 dbSNP
rs1458719530 1141 dbSNP
rs1033217144 1146 dbSNP
rs1461828075 1153 dbSNP
rs1369205435 1158 dbSNP
rs1326311133 1161 dbSNP
rs957148553 1166 dbSNP
rs1373154558 1179 dbSNP
rs971248810 1180 dbSNP
rs1261170021 1189 dbSNP
rs1189344889 1190 dbSNP
rs975018707 1191 dbSNP
rs981281339 1193 dbSNP
rs1278505215 1197 dbSNP
rs1213381496 1201 dbSNP
rs1373445108 1202 dbSNP
rs115021775 1204 dbSNP
rs958605891 1205 dbSNP
rs990076859 1207 dbSNP
rs914204576 1210 dbSNP
rs1333642953 1227 dbSNP
rs1436718766 1233 dbSNP
rs775616314 1241 dbSNP
rs1325145977 1244 dbSNP
rs1441291023 1250 dbSNP
rs116669104 1252 dbSNP
rs1165182596 1258 dbSNP
rs1460632964 1259 dbSNP
rs572244618 1264 dbSNP
rs1451409709 1269 dbSNP
rs923025458 1277 dbSNP
rs1193579254 1279 dbSNP
rs532881191 1285 dbSNP
rs1194487317 1286 dbSNP
rs1050607723 1289 dbSNP
rs117501349 1292 dbSNP
rs973935747 1293 dbSNP
rs1345137187 1294 dbSNP
rs576331563 1300 dbSNP
rs1470554249 1303 dbSNP
rs1233923377 1310 dbSNP
rs1302527597 1310 dbSNP
rs920641886 1313 dbSNP
rs1326585305 1316 dbSNP
rs1416027735 1319 dbSNP
rs1390666987 1320 dbSNP
rs897802703 1326 dbSNP
rs1474987377 1330 dbSNP
rs571704165 1345 dbSNP
rs1165468211 1348 dbSNP
rs930727918 1351 dbSNP
rs1396393823 1355 dbSNP
rs535870892 1357 dbSNP
rs1055780881 1358 dbSNP
rs894504715 1363 dbSNP
rs950268884 1364 dbSNP
rs993447482 1365 dbSNP
rs1379939259 1366 dbSNP
rs543427963 1367 dbSNP
rs1328106739 1369 dbSNP
rs1437682329 1369 dbSNP
rs1206910800 1371 dbSNP
rs768527963 1372 dbSNP
rs903350635 1374 dbSNP
rs760414646 1376 dbSNP
rs1278939229 1377 dbSNP
rs184164741 1385 dbSNP
rs763246128 1393 dbSNP
rs958532831 1397 dbSNP
rs532647939 1403 dbSNP
rs1290877178 1404 dbSNP
rs1289189660 1405 dbSNP
rs892861715 1410 dbSNP
rs914476331 1417 dbSNP
rs1233514747 1419 dbSNP
rs996573900 1423 dbSNP
rs867314467 1429 dbSNP
rs541373922 1434 dbSNP
rs146414879 1438 dbSNP
rs188713884 1439 dbSNP
rs922962287 1448 dbSNP
rs1184824515 1452 dbSNP
rs1473991969 1453 dbSNP
rs1475087791 1457 dbSNP
rs1256381142 1464 dbSNP
rs1210122140 1465 dbSNP
rs1443703773 1476 dbSNP
rs1258448635 1477 dbSNP
rs1015886528 1484 dbSNP
rs1272955212 1485 dbSNP
rs961325608 1486 dbSNP
rs974284621 1489 dbSNP
rs774549387 1492 dbSNP
rs910691078 1499 dbSNP
rs919788416 1503 dbSNP
rs930696809 1510 dbSNP
rs991600931 1517 dbSNP
rs1316811264 1522 dbSNP
rs548773635 1522 dbSNP
rs915907321 1527 dbSNP
rs950071375 1532 dbSNP
rs1037856868 1536 dbSNP
rs1188942375 1537 dbSNP
rs1412609944 1538 dbSNP
rs1182140294 1539 dbSNP
rs1420208111 1539 dbSNP
rs1473478135 1544 dbSNP
rs1474322629 1545 dbSNP
rs898068979 1554 dbSNP
rs1045735530 1556 dbSNP
rs1465247978 1561 dbSNP
rs993744051 1569 dbSNP
rs903401797 1575 dbSNP
rs377721423 1578 dbSNP
rs1289403011 1582 dbSNP
rs906527793 1585 dbSNP
rs1310614704 1588 dbSNP
rs934945278 1591 dbSNP
rs1414802660 1592 dbSNP
rs1366467780 1599 dbSNP
rs1034191190 1600 dbSNP
rs561051882 1606 dbSNP
rs958134628 1607 dbSNP
rs1165971583 1613 dbSNP
rs55858908 1618 dbSNP
rs1324275923 1620 dbSNP
rs192265483 1623 dbSNP
rs1021504349 1627 dbSNP
rs1191722221 1629 dbSNP
rs149734425 1632 dbSNP
rs1269951480 1647 dbSNP
rs1247026005 1648 dbSNP
rs1340769730 1649 dbSNP
rs1453481319 1654 dbSNP
rs182879722 1656 dbSNP
rs1227752499 1658 dbSNP
rs1278743357 1659 dbSNP
rs1028068006 1660 dbSNP
rs11548763 1664 dbSNP
rs145626064 1678 dbSNP
rs1232697157 1679 dbSNP
rs1211639143 1685 dbSNP
rs1258557671 1686 dbSNP
rs1445472299 1687 dbSNP
rs1192252744 1689 dbSNP
rs1367550079 1689 dbSNP
rs1294429727 1691 dbSNP
rs187023714 1694 dbSNP
rs1476382871 1695 dbSNP
rs1171696543 1701 dbSNP
rs985875614 1702 dbSNP
rs1307089275 1703 dbSNP
rs1394327171 1705 dbSNP
rs1429801064 1708 dbSNP
rs1434828084 1708 dbSNP
rs1491333548 1708 dbSNP
rs754057095 1708 dbSNP
rs1204760448 1709 dbSNP
rs1249869792 1709 dbSNP
rs1420323869 1709 dbSNP
rs1483525287 1709 dbSNP
rs200583503 1709 dbSNP
rs201736448 1709 dbSNP
rs537232273 1709 dbSNP
rs1015272907 1711 dbSNP
rs1382380498 1712 dbSNP
rs961565790 1723 dbSNP
rs1318149006 1724 dbSNP
rs1475634434 1725 dbSNP
rs941813166 1726 dbSNP
rs973533031 1729 dbSNP
rs1301926492 1730 dbSNP
rs1410013506 1737 dbSNP
rs919464628 1742 dbSNP
rs1396238820 1750 dbSNP
rs974041950 1752 dbSNP
rs565692123 1759 dbSNP
rs929534218 1770 dbSNP
rs1047092035 1771 dbSNP
rs1348891381 1773 dbSNP
rs558844759 1780 dbSNP
rs554731075 1785 dbSNP
rs1182664658 1786 dbSNP
rs577554924 1794 dbSNP
rs1254253150 1797 dbSNP
rs1180188349 1804 dbSNP
rs1191469549 1807 dbSNP
rs1252318986 1815 dbSNP
rs1454637875 1816 dbSNP
rs1212911329 1818 dbSNP
rs991569865 1822 dbSNP
rs915959835 1826 dbSNP
rs1267842582 1828 dbSNP
rs754084731 1832 dbSNP
rs576468849 1833 dbSNP
rs1394930265 1835 dbSNP
rs757693138 1837 dbSNP
rs1021430769 1838 dbSNP
rs1451482480 1839 dbSNP
rs569691826 1841 dbSNP
rs998754097 1845 dbSNP
rs1386634026 1852 dbSNP
rs537134116 1859 dbSNP
rs558527459 1861 dbSNP
rs1163010892 1875 dbSNP
rs1423286685 1879 dbSNP
rs764810501 1879 dbSNP
rs34559036 1881 dbSNP
rs986187058 1892 dbSNP
rs1463887438 1901 dbSNP
rs1247952586 1912 dbSNP
rs1209742766 1915 dbSNP
rs1263288517 1917 dbSNP
rs1331728099 1917 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_145341 | 3UTR | UAAAGGAAAUGUUUUUUCUUUUUUUUUUGUUUUUCGAGGGGGCAAGGAGGGACAGAAAAGUAACCUCUUCUUAAGUGGAAUAUUCUAAUAAGCUACCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000280154.7 | 3UTR | ACAUUUUAUAAACCUACAUUUAAGGGGAAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.496 6.9e-3 0.512 5.3e-3 24 Click to see details
GSE21032 Prostate cancer -0.262 8.4e-3 -0.254 1.0e-2 83 Click to see details
GSE38226 Liver fibrosis 0.496 1.1e-2 0.605 1.8e-3 21 Click to see details
GSE19350 CNS germ cell tumors 0.646 1.2e-2 0.615 1.7e-2 12 Click to see details
GSE42095 Differentiated embryonic stem cells -0.455 1.5e-2 -0.447 1.6e-2 23 Click to see details
GSE28260 Renal cortex and medulla 0.573 2.0e-2 0.620 1.2e-2 13 Click to see details
GSE17498 Multiple myeloma -0.303 2.9e-2 -0.268 4.7e-2 40 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.597 5.9e-2 -0.571 7.0e-2 8 Click to see details
GSE17306 Multiple myeloma 0.219 6.5e-2 0.230 5.6e-2 49 Click to see details
GSE21849 B cell lymphoma 0.278 7.2e-2 0.286 6.6e-2 29 Click to see details
GSE14794 Lymphoblastoid cells 0.086 2.1e-1 0.008 4.7e-1 90 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.148 2.4e-1 -0.043 4.2e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.119 2.6e-1 0.004 4.9e-1 32 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.148 2.7e-1 -0.301 9.9e-2 20 Click to see details
GSE27834 Pluripotent stem cells -0.168 2.7e-1 -0.309 1.2e-1 16 Click to see details
GSE21687 Ependynoma primary tumors 0.047 3.6e-1 0.014 4.6e-1 64 Click to see details
GSE19783 ER+ ER+ breast cancer 0.077 3.7e-1 0.129 2.9e-1 20 Click to see details
GSE19536 Breast cancer -0.019 4.3e-1 -0.011 4.6e-1 100 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.039 4.3e-1 -0.195 1.8e-1 25 Click to see details
GSE26953 Aortic valvular endothelial cells 0.017 4.7e-1 -0.082 3.5e-1 24 Click to see details
GSE19783 ER- ER- breast cancer -0.008 4.7e-1 -0.011 4.6e-1 79 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
459 hsa-miR-548c-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055126 SCD stearoyl-CoA desaturase 2 2
MIRT055360 PDCD4 programmed cell death 4 2 2
MIRT057340 PANK1 pantothenate kinase 1 2 2
MIRT058532 PRDM10 PR/SET domain 10 2 2
MIRT064700 CCND2 cyclin D2 2 4
MIRT068070 SPATA13 spermatogenesis associated 13 2 4
MIRT069438 CDCA4 cell division cycle associated 4 2 4
MIRT070546 EXOC5 exocyst complex component 5 2 2
MIRT070866 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071492 CALM1 calmodulin 1 2 6
MIRT077694 ZNF652 zinc finger protein 652 2 2
MIRT078290 RPS6KB1 ribosomal protein S6 kinase B1 2 2
MIRT080233 SMAD4 SMAD family member 4 2 6
MIRT080612 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT081130 LDLR low density lipoprotein receptor 2 6
MIRT083622 NCOA3 nuclear receptor coactivator 3 2 2
MIRT088674 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT089617 MAT2A methionine adenosyltransferase 2A 2 2
MIRT091138 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT091699 TGFBR2 transforming growth factor beta receptor 2 2 4
MIRT093590 SPCS3 signal peptidase complex subunit 3 2 2
MIRT096243 CANX calnexin 2 2
MIRT099747 SOX4 SRY-box 4 2 6
MIRT101977 EPHA7 EPH receptor A7 2 4
MIRT102959 EN2 engrailed homeobox 2 2 4
MIRT107464 NFIB nuclear factor I B 2 2
MIRT107876 FXN frataxin 2 2
MIRT110174 ZNF711 zinc finger protein 711 2 2
MIRT115410 UNKL unkempt family like zinc finger 2 4
MIRT121611 LMNB1 lamin B1 2 2
MIRT130394 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT134673 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT142311 RBBP6 RB binding protein 6, ubiquitin ligase 2 2
MIRT165349 AFF4 AF4/FMR2 family member 4 2 2
MIRT165649 DCTN4 dynactin subunit 4 2 2
MIRT166971 FCHO2 FCH domain only 2 2 2
MIRT176163 PGK1 phosphoglycerate kinase 1 2 2
MIRT181740 UHMK1 U2AF homology motif kinase 1 2 4
MIRT186876 CCNT1 cyclin T1 2 2
MIRT187285 DAZAP2 DAZ associated protein 2 2 2
MIRT188824 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 4
MIRT196761 CRLF3 cytokine receptor like factor 3 2 2
MIRT200994 ZNF805 zinc finger protein 805 2 4
MIRT203681 DIP2A disco interacting protein 2 homolog A 2 2
MIRT206304 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT208377 SLC25A36 solute carrier family 25 member 36 2 2
MIRT211083 C4ORF32 family with sequence similarity 241 member A 2 2
MIRT211231 FGF2 fibroblast growth factor 2 2 6
MIRT212651 SH3BP2 SH3 domain binding protein 2 2 2
MIRT217310 FOXO3 forkhead box O3 2 2
MIRT218910 GLO1 glyoxalase I 2 4
MIRT223962 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT242382 TMC5 transmembrane channel like 5 2 2
MIRT262836 CCDC6 coiled-coil domain containing 6 2 2
MIRT264533 TARDBP TAR DNA binding protein 2 6
MIRT273412 SLC11A2 solute carrier family 11 member 2 2 2
MIRT274711 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT275277 NUDT4 nudix hydrolase 4 2 2
MIRT298516 SPOPL speckle type BTB/POZ protein like 2 2
MIRT298567 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT302422 CLIP4 CAP-Gly domain containing linker protein family member 4 2 4
MIRT320613 ZNRF2 zinc and ring finger 2 2 2
MIRT320791 PURB purine rich element binding protein B 2 2
MIRT322922 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT340714 MZT1 mitotic spindle organizing protein 1 2 2
MIRT347234 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT348559 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT354233 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT354310 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT358523 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT362352 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT363825 GOLGA7 golgin A7 2 2
MIRT367234 RPL5 ribosomal protein L5 2 6
MIRT368206 ADIPOR2 adiponectin receptor 2 2 2
MIRT372013 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 4
MIRT374304 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT377387 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT379837 USP6NL USP6 N-terminal like 2 8
MIRT392413 RREB1 ras responsive element binding protein 1 2 4
MIRT395591 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT400810 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT401743 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT408462 MTX3 metaxin 3 2 2
MIRT441521 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT442173 AZF1 azoospermia factor 1 2 2
MIRT443086 ABLIM1 actin binding LIM protein 1 2 2
MIRT443391 CHML CHM like, Rab escort protein 2 2 2
MIRT443459 ANP32B acidic nuclear phosphoprotein 32 family member B 2 6
MIRT443653 MRAS muscle RAS oncogene homolog 2 2
MIRT443718 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT443963 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT444249 CTNND1 catenin delta 1 2 2
MIRT444795 TMEM251 transmembrane protein 251 2 2
MIRT444943 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT445180 ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 2 2
MIRT445334 CWC27 CWC27 spliceosome associated protein homolog 2 2
MIRT445707 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT446048 TPR translocated promoter region, nuclear basket protein 2 2
MIRT446091 ENAH ENAH, actin regulator 2 2
MIRT446236 FZD6 frizzled class receptor 6 2 4
MIRT446543 GOLGA8B golgin A8 family member B 2 2
MIRT446592 FBXO40 F-box protein 40 2 2
MIRT446741 MYEF2 myelin expression factor 2 2 2
MIRT446775 ATAD5 ATPase family, AAA domain containing 5 2 2
MIRT447451 ADM adrenomedullin 2 2
MIRT447801 EPC2 enhancer of polycomb homolog 2 2 2
MIRT448179 IL1RAP interleukin 1 receptor accessory protein 2 4
MIRT448773 GOLGA8A golgin A8 family member A 2 2
MIRT449473 HAT1 histone acetyltransferase 1 2 2
MIRT449635 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT450237 CDKN2AIP CDKN2A interacting protein 2 2
MIRT450379 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT450506 ALPK3 alpha kinase 3 2 2
MIRT451500 FOPNL FGFR1OP N-terminal like 2 2
MIRT452105 NUCB2 nucleobindin 2 2 2
MIRT456851 ZNF460 zinc finger protein 460 2 2
MIRT463263 ZIC5 Zic family member 5 2 4
MIRT463348 ZFHX3 zinc finger homeobox 3 2 2
MIRT464778 UBE2G1 ubiquitin conjugating enzyme E2 G1 2 2
MIRT467594 SLC7A5 solute carrier family 7 member 5 2 6
MIRT468223 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468469 SET SET nuclear proto-oncogene 2 4
MIRT469368 REST RE1 silencing transcription factor 2 6
MIRT470526 PPP1CC protein phosphatase 1 catalytic subunit gamma 2 4
MIRT472908 MT1E metallothionein 1E 2 2
MIRT473336 METTL21A methyltransferase like 21A 2 2
MIRT476666 FXR1 FMR1 autosomal homolog 1 2 2
MIRT477145 FAM102B family with sequence similarity 102 member B 2 2
MIRT478928 CPNE3 copine 3 2 2
MIRT479047 COIL coilin 2 8
MIRT481917 ANKRD40 ankyrin repeat domain 40 2 6
MIRT483700 BICD2 BICD cargo adaptor 2 2 8
MIRT483889 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT484733 SF3A1 splicing factor 3a subunit 1 2 2
MIRT485053 THBS1 thrombospondin 1 2 2
MIRT485497 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT485747 CALCR calcitonin receptor 2 2
MIRT486125 MT2A metallothionein 2A 2 2
MIRT494099 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT494103 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT499091 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT501109 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503173 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT504132 RCC1 regulator of chromosome condensation 1 2 6
MIRT504717 DLC1 DLC1 Rho GTPase activating protein 2 6
MIRT505379 TMEM154 transmembrane protein 154 2 4
MIRT505657 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT505887 RNF219 ring finger protein 219 2 2
MIRT506525 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507083 GXYLT1 glucoside xylosyltransferase 1 2 6
MIRT507090 GPR180 G protein-coupled receptor 180 2 6
MIRT507174 GAN gigaxonin 2 10
MIRT507940 BTG3 BTG anti-proliferation factor 3 2 6
MIRT508316 RPL18 ribosomal protein L18 2 4
MIRT509452 CAPRIN1 cell cycle associated protein 1 2 4
MIRT509488 LARP1 La ribonucleoprotein domain family member 1 2 10
MIRT509609 GALK2 galactokinase 2 2 8
MIRT510229 PLEKHG3 pleckstrin homology and RhoGEF domain containing G3 2 8
MIRT510607 TPPP tubulin polymerization promoting protein 2 6
MIRT510842 RARB retinoic acid receptor beta 2 6
MIRT510983 PFN2 profilin 2 2 6
MIRT511370 IKZF4 IKAROS family zinc finger 4 2 6
MIRT512481 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 4
MIRT513061 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT513873 HOXA5 homeobox A5 2 2
MIRT515645 MYBPC1 myosin binding protein C, slow type 2 2
MIRT516649 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT516926 OSTF1 osteoclast stimulating factor 1 2 6
MIRT517348 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 6
MIRT519196 NAA38 LSM8 homolog, U6 small nuclear RNA associated 2 6
MIRT520215 WASL Wiskott-Aldrich syndrome like 2 8
MIRT520541 TRA2B transformer 2 beta homolog 2 4
MIRT521613 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT522258 NLK nemo like kinase 2 2
MIRT522809 KPNA3 karyopherin subunit alpha 3 2 6
MIRT522945 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT523347 GUCD1 guanylyl cyclase domain containing 1 2 4
MIRT523375 GSR glutathione-disulfide reductase 2 4
MIRT525158 ZNF329 zinc finger protein 329 2 2
MIRT526066 CCDC81 coiled-coil domain containing 81 2 2
MIRT526164 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT526182 HEPH hephaestin 2 2
MIRT526646 TRIM16L tripartite motif containing 16 like 2 2
MIRT527156 SCN9A sodium voltage-gated channel alpha subunit 9 2 4
MIRT527442 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527685 ZNF552 zinc finger protein 552 2 4
MIRT527751 NANOGNB NANOG neighbor homeobox 2 2
MIRT527788 TMEM44 transmembrane protein 44 2 8
MIRT528462 NXT2 nuclear transport factor 2 like export factor 2 2 4
MIRT528869 RSPH3 radial spoke head 3 homolog 2 2
MIRT529046 ARL9 ADP ribosylation factor like GTPase 9 2 2
MIRT529107 TLL2 tolloid like 2 2 2
MIRT529377 SKP1 S-phase kinase associated protein 1 2 4
MIRT529403 ICK intestinal cell kinase 2 2
MIRT529591 TMEM220 transmembrane protein 220 2 2
MIRT530213 NSUN7 NOP2/Sun RNA methyltransferase family member 7 2 2
MIRT530800 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT530839 MAPK7 mitogen-activated protein kinase 7 2 2
MIRT530859 TTLL5 tubulin tyrosine ligase like 5 2 2
MIRT531433 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT532311 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT532501 HOXA13 homeobox A13 2 2
MIRT532601 SIX4 SIX homeobox 4 2 2
MIRT533356 UBE2W ubiquitin conjugating enzyme E2 W 2 4
MIRT534389 SEPT2 septin 2 2 2
MIRT534798 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT536193 MAML3 mastermind like transcriptional coactivator 3 2 2
MIRT536243 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT536534 KCTD10 potassium channel tetramerization domain containing 10 2 2
MIRT536932 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2 2
MIRT538628 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT538836 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT538944 BMP2K BMP2 inducible kinase 2 2
MIRT539038 ATXN7L1 ataxin 7 like 1 2 2
MIRT539379 ADSS adenylosuccinate synthase 2 6
MIRT539746 SH3RF2 SH3 domain containing ring finger 2 2 2
MIRT539879 RPL32 ribosomal protein L32 2 2
MIRT539956 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT540458 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT541611 ASB11 ankyrin repeat and SOCS box containing 11 2 2
MIRT543034 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT544838 PLA2G16 phospholipase A2 group XVI 2 2
MIRT546177 TRIAP1 TP53 regulated inhibitor of apoptosis 1 2 2
MIRT546320 TM9SF3 transmembrane 9 superfamily member 3 2 4
MIRT546897 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT546950 SFTPA1 surfactant protein A1 2 2
MIRT547166 PDZD8 PDZ domain containing 8 2 2
MIRT547323 NPTN neuroplastin 2 2
MIRT547359 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT547562 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548082 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548218 FKBP1A FK506 binding protein 1A 2 2
MIRT548768 CNN3 calponin 3 2 2
MIRT548925 CDK6 cyclin dependent kinase 6 2 2
MIRT548954 CDC27 cell division cycle 27 2 2
MIRT549696 TLE3 transducin like enhancer of split 3 2 4
MIRT549734 NUP37 nucleoporin 37 2 2
MIRT549863 MCM4 minichromosome maintenance complex component 4 2 2
MIRT551070 MKLN1 muskelin 1 2 2
MIRT551194 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT552113 EMC7 ER membrane protein complex subunit 7 2 2
MIRT552236 SART3 squamous cell carcinoma antigen recognized by T-cells 3 2 2
MIRT552287 CBY1 chibby family member 1, beta catenin antagonist 2 4
MIRT552468 ZNF280B zinc finger protein 280B 2 2
MIRT553628 TJP1 tight junction protein 1 2 2
MIRT555507 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT556953 IGF1R insulin like growth factor 1 receptor 2 4
MIRT557203 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 4
MIRT557538 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT557603 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT558233 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT558261 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT558336 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558875 CCT6A chaperonin containing TCP1 subunit 6A 2 2
MIRT559684 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT559986 RPL24 ribosomal protein L24 2 2
MIRT561051 SKP2 S-phase kinase associated protein 2 2 2
MIRT561783 PAXBP1 PAX3 and PAX7 binding protein 1 2 2
MIRT561833 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT562588 CBX2 chromobox 2 2 2
MIRT562956 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563047 NBPF12 NBPF member 12 2 2
MIRT563157 NOLC1 nucleolar and coiled-body phosphoprotein 1 2 2
MIRT563213 ZNF813 zinc finger protein 813 2 2
MIRT563436 SLC3A2 solute carrier family 3 member 2 2 2
MIRT563927 STAT2 signal transducer and activator of transcription 2 2 2
MIRT564149 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT564204 ABT1 activator of basal transcription 1 2 2
MIRT564214 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564637 ZNF562 zinc finger protein 562 2 4
MIRT564932 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT565587 SLC6A8 solute carrier family 6 member 8 2 2
MIRT565667 SIX1 SIX homeobox 1 2 2
MIRT566233 PTMA prothymosin, alpha 2 2
MIRT566237 PTCH1 patched 1 2 2
MIRT566454 PHAX phosphorylated adaptor for RNA export 2 4
MIRT566949 LEPROT leptin receptor overlapping transcript 2 2
MIRT567323 HMGB2 high mobility group box 2 2 2
MIRT568381 ATP13A3 ATPase 13A3 2 2
MIRT568427 ATF7IP activating transcription factor 7 interacting protein 2 4
MIRT571579 USP15 ubiquitin specific peptidase 15 2 2
MIRT572335 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT573391 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT573574 RANBP1 RAN binding protein 1 2 2
MIRT574388 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT576611 Ccdc117 coiled-coil domain containing 117 2 2
MIRT608962 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609962 ATF7IP2 activating transcription factor 7 interacting protein 2 2 2
MIRT611714 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT613603 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT614014 PAOX polyamine oxidase 2 2
MIRT614159 GNA14 G protein subunit alpha 14 2 2
MIRT614181 FAM53B family with sequence similarity 53 member B 2 2
MIRT614544 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 2 2
MIRT615284 FGF5 fibroblast growth factor 5 2 2
MIRT615831 PCSK7 proprotein convertase subtilisin/kexin type 7 2 2
MIRT618541 SEMA5A semaphorin 5A 2 2
MIRT619136 MCOLN3 mucolipin 3 2 2
MIRT619455 NUP214 nucleoporin 214 2 2
MIRT620038 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT620243 CCDC65 coiled-coil domain containing 65 2 2
MIRT620369 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT620474 CERS6 ceramide synthase 6 2 2
MIRT620881 KCTD7 potassium channel tetramerization domain containing 7 2 2
MIRT621948 STYX serine/threonine/tyrosine interacting protein 2 2
MIRT622156 SNTG1 syntrophin gamma 1 2 2
MIRT622312 SETD5 SET domain containing 5 2 2
MIRT622486 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT623190 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT623650 HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 2 2
MIRT623655 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT624403 CCDC80 coiled-coil domain containing 80 2 4
MIRT624489 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 2 2
MIRT624694 AR androgen receptor 2 2
MIRT625011 PAK4 p21 (RAC1) activated kinase 4 2 2
MIRT625792 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha 2 2
MIRT625987 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626122 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626394 ZMYM6 zinc finger MYM-type containing 6 2 2
MIRT626560 NAGS N-acetylglutamate synthase 2 2
MIRT626568 DRAM2 DNA damage regulated autophagy modulator 2 2 2
MIRT626647 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT626956 PRDM2 PR/SET domain 2 2 2
MIRT627868 PARVB parvin beta 2 2
MIRT628071 KCNJ13 potassium voltage-gated channel subfamily J member 13 2 2
MIRT628198 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 2 2
MIRT630547 GJB7 gap junction protein beta 7 2 2
MIRT633570 LAMP2 lysosomal associated membrane protein 2 2 2
MIRT635535 ELMOD2 ELMO domain containing 2 2 2
MIRT636219 SNAI2 snail family transcriptional repressor 2 2 2
MIRT636614 CLIC5 chloride intracellular channel 5 2 2
MIRT640754 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640996 PROK2 prokineticin 2 2 2
MIRT641143 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT642288 ZNF99 zinc finger protein 99 2 2
MIRT643506 ZNF28 zinc finger protein 28 2 2
MIRT644027 ZNF792 zinc finger protein 792 2 2
MIRT644073 PARG poly(ADP-ribose) glycohydrolase 2 2
MIRT644598 SPOP speckle type BTB/POZ protein 2 2
MIRT644631 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT644955 IFNB1 interferon beta 1 2 2
MIRT646357 CPT1B carnitine palmitoyltransferase 1B 2 2
MIRT647624 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT649089 FBXO25 F-box protein 25 2 4
MIRT649382 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT651176 ZNF319 zinc finger protein 319 2 2
MIRT652305 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652393 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT652815 TBL2 transducin beta like 2 2 2
MIRT653111 SRSF1 serine and arginine rich splicing factor 1 2 2
MIRT653145 SRPK2 SRSF protein kinase 2 2 2
MIRT653815 SIN3A SIN3 transcription regulator family member A 2 2
MIRT653947 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 2 2
MIRT655157 PHF21A PHD finger protein 21A 2 2
MIRT655317 PDCD11 programmed cell death 11 2 2
MIRT656937 KIAA1456 KIAA1456 2 2
MIRT657000 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT657557 GSK3B glycogen synthase kinase 3 beta 2 2
MIRT657692 GPR135 G protein-coupled receptor 135 2 2
MIRT658251 FAXC failed axon connections homolog 2 2
MIRT658717 ELOVL4 ELOVL fatty acid elongase 4 2 2
MIRT659421 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT659488 CLDN1 claudin 1 2 2
MIRT659534 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT659574 CEP85L centrosomal protein 85 like 2 2
MIRT660570 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT661595 BMPR1B bone morphogenetic protein receptor type 1B 2 2
MIRT661844 ZNF587B zinc finger protein 587B 2 2
MIRT663397 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT664409 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT664804 GALC galactosylceramidase 2 2
MIRT664834 GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 2 2
MIRT666146 SP4 Sp4 transcription factor 2 2
MIRT666779 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT667105 SLC25A2 solute carrier family 25 member 2 2 2
MIRT667115 OLA1 Obg like ATPase 1 2 2
MIRT667504 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT668011 HCFC2 host cell factor C2 2 2
MIRT672876 TTC28 tetratricopeptide repeat domain 28 2 2
MIRT682598 CPA4 carboxypeptidase A4 2 2
MIRT683340 ZNF581 zinc finger protein 581 2 2
MIRT683581 CARD8 caspase recruitment domain family member 8 2 2
MIRT683691 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683712 EXOSC6 exosome component 6 2 4
MIRT684560 ZNF708 zinc finger protein 708 2 2
MIRT685425 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT685509 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT686052 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686140 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT686425 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT687716 KLF2 Kruppel like factor 2 2 2
MIRT687727 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT688183 FRRS1 ferric chelate reductase 1 2 2
MIRT688306 FAM208A family with sequence similarity 208 member A 2 2
MIRT688420 DUSP2 dual specificity phosphatase 2 2 2
MIRT688491 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT688725 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689208 ZNF574 zinc finger protein 574 2 2
MIRT690340 DHX36 DEAH-box helicase 36 2 2
MIRT690516 ZNF845 zinc finger protein 845 2 2
MIRT690614 DCTN3 dynactin subunit 3 2 2
MIRT691051 RDH13 retinol dehydrogenase 13 2 2
MIRT691265 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT692171 RNF207 ring finger protein 207 2 2
MIRT692728 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT693384 ZNF528 zinc finger protein 528 2 2
MIRT694449 GSG2 histone H3 associated protein kinase 2 2
MIRT694485 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT695650 NUP205 nucleoporin 205 2 2
MIRT695803 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT696128 GLP2R glucagon like peptide 2 receptor 2 2
MIRT696694 APOC3 apolipoprotein C3 2 2
MIRT696888 SAMD15 sterile alpha motif domain containing 15 2 2
MIRT697790 UBXN7 UBX domain protein 7 2 2
MIRT698144 TNPO3 transportin 3 2 2
MIRT698363 TMEM127 transmembrane protein 127 2 2
MIRT698489 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699121 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT699849 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT701321 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT701386 NOA1 nitric oxide associated 1 2 2
MIRT701391 NLRC3 NLR family CARD domain containing 3 2 2
MIRT701954 MITF melanogenesis associated transcription factor 2 2
MIRT702167 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT702782 IFNLR1 interferon lambda receptor 1 2 2
MIRT703466 FOXJ3 forkhead box J3 2 2
MIRT703968 EMP2 epithelial membrane protein 2 2 2
MIRT703973 EMC10 ER membrane protein complex subunit 10 2 2
MIRT704350 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704603 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705272 BAHD1 bromo adjacent homology domain containing 1 2 2
MIRT707156 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707271 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT707461 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707505 AXL AXL receptor tyrosine kinase 2 2
MIRT707705 FAM118A family with sequence similarity 118 member A 2 2
MIRT707722 CDC6 cell division cycle 6 2 2
MIRT708018 TSPAN1 tetraspanin 1 2 2
MIRT708071 LIX1L limb and CNS expressed 1 like 2 2
MIRT708139 GK5 glycerol kinase 5 (putative) 2 2
MIRT710550 NR4A2 nuclear receptor subfamily 4 group A member 2 2 2
MIRT713228 GPR75 G protein-coupled receptor 75 2 2
MIRT713273 SPRTN SprT-like N-terminal domain 2 2
MIRT715622 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT716477 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT716492 ZNF394 zinc finger protein 394 2 2
MIRT717715 NCKAP1 NCK associated protein 1 2 2
MIRT718046 ANAPC1 anaphase promoting complex subunit 1 2 2
MIRT719400 SLC15A4 solute carrier family 15 member 4 2 2
MIRT719899 PTGIS prostaglandin I2 synthase 2 2
MIRT720781 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722063 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
MIRT723234 FAM91A1 family with sequence similarity 91 member A1 2 2
MIRT723768 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT724057 FAM84A family with sequence similarity 84 member A 2 2
MIRT725194 SDAD1 SDA1 domain containing 1 2 2
MIRT735687 IL6ST interleukin 6 signal transducer 2 0
MIRT735689 ACVR1C activin A receptor type 1C 2 0
MIRT736080 SPOCK1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-548c-3p Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548c Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-548c-3p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (HepG2, Hep-394, Hep-SWX, Huh-7)
hsa-miR-548c-3p Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548c-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548c-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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