miRTarBase - #MIRT057820


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pre-miRNA Information
pre-miRNA hsa-mir-5696   
Genomic Coordinates chr2: 101309450 - 101309534
Description Homo sapiens miR-5696 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5696
Sequence 4| CUCAUUUAAGUAGUCUGAUGCC |25
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs571745487 3 dbSNP
rs1187652258 4 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC30A7   
Synonyms ZNT7, ZnT-7, ZnTL2
Description solute carrier family 30 member 7
Transcript NM_133496   
Other Transcripts NM_001144884   
Expression
Putative miRNA Targets on SLC30A7
3'UTR of SLC30A7
(miRNA target sites are highlighted)		 
>SLC30A7|NM_133496|3'UTR
   1 TGAATGGAAAGAAATTATGCACCTTTTATGGACCAAATTTTTCTGGTACTGTACGATCCAAAACATTGTACCCAGCTTTT
  81 TAAAAGAGAGAAATTATCACTACAACTCCCGAGCACTAAGTAGACGGGGTAGAGTCAGCCGTTCATGCTTTGTGGGGAGT
 161 TCACAGCTAAGGGATCAGATTTAAGAGGATATCTCCTGGACTTTTGGTCTTTTCTTTTGTGCTCTTTCCTCCAAATCTTT
 241 TTGACTTCTGAGGTTTTTAGCTTAGGATGTTAATTTGTCCTTTTGTCTTTCTTTTTTTGTTTTTGTTTTCTGTTTGTTTG
 321 TTTTCATGTTGAATGCCCACACCACCATCCTCTCATCCCAGCCAGTAAGAATTTCAGTTGTGGGCCTCCAGTCTTCTGGA
 401 ATGTCTTCACTGCAGCTGCTGGAAATCACTGCTTTCATTCCCACAAAACCAGTATTACTTTTTTTTAAAAAAAGAAAGAA
 481 ATTGGAAATCTGTGCTATACGTAATGTCATAATTGTTGACGTTCTTCAGTATAATCATGTTTGTTAAATTGTTTGTACCT
 561 TGCAAACTTATGAACCAAACCATATTGGGTTTTCAAAGTGCCTTTGTATCCAAAAATGTATTTGCCAGCATAGAAATGTA
 641 CCATCAAGAGTCATGTATGTTTTATTTTTGTTTTTATTTTTTATTTTTTGAGATGGAGTCTCGCTCTGTAGCCAGGCTGG
 721 AGTGCAGTGGCATAATCTCAGCTCACTGCAACCTCTGCTTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTTCTGAGTA
 801 GCTGCGACTATGGGCGTGTGCCACCATGCCCAGCTAATTTTTGCATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCA
 881 GGATGGTCTTGATCTCTTGACCTCGTGATCCGTCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCAC
 961 GCCCGGCTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAATGGATATTCTGTAAAATATCCTGTACAAAACAAGACT
1041 ATTGCCAGTAATGTATACAAATTGTCTTTTTGTGTACTTCCAGCATAGGTTTGGATATATGAACATTTTTCTTTTATTGT
1121 TTTATCTTCACAGAAAATAAAAGGTGTTAATTTGCTTTTTAAAACAAATTTAATTATCACATTTTAAATTACTTTGTGGA
1201 CTGTGTTTTCAAAACTTTGCAAATTCATCTGTTACACAGAAAATTTTGACTTAAAACATCTGCTGAATTCCAAATTTCTG
1281 TAATAGCTACTGTATCTGTGATAAACTTTCCTATATCTTTCCTTGCCATTTCTATGGATTTTATAATGAAAGAAAAAGGC
1361 ATTGGAGACTGAAGGCAGAAATGGTTGTGACAGTGCTGTTTGGCTTTTTCATTCTTCAAATGCCAAGTCATCCACTTTGT
1441 TTTCCTGTTTAGGCTTTGCACAAATACAATTGCTTTCAGGAATCCTAAAGCAGCATTTTATTGAGTTTGAATTATTAAAG
1521 GTACAGAGGAAATGTGGTGATGTAGAACTTTTCCTAACACAGGTATCTAGGAAGTAAGTGCTGAGTTGATTTTCTAGGTT
1601 CTTACGTATTTGAAAAATAAAATTGCAATTCGAGATAAGTGCTTGAGCACTCTACTTAAGTATTCTCTGTGTTTTATGAA
1681 GAGAAAATGATCTGATTTTCCCTTATACTTCATTTTACAATACATATTCCCTTTTAACTTAAAAAAATTGTAAATGTGGG
1761 AGAAAAAACCCTGCAGGATGGAAACAATTATTAAGAATGTAGATCAATAAGTACTTTTTAGTGATGTGGCAGAAATCCCT
1841 GTTGATTCTAAGTTTTAGAGTGTCTTTTCCCCTATTTCTGACCTACAACTATAAACTACTCTCTATTAGGAGAACTAGAC
1921 CACTTTCTTCATTCTTTTCTAAACTGCTGCAGATTGCCGTGAACTCTATCAATAGTCTCTTTTCCGCAGGCAAAGTGGCA
2001 TTTTCTAAACATGTTTGCTTACTGCCAGGTGGTTTGAAATCTATGATTTACTGCAGTAGTATGTGCTTAAAACAACTGTT
2081 GAGGTCTTTTAAGCAGGAAAGTTCAAAAGGAAGTGTCCTGATAATGGTACTGGTTTTTCTACAAATATAAGTAGTCATTA
2161 GAAGTTTGCAACCACCACCAAGTCTGAGAGAACTCTGGGATATTCTGTGGGTTTTGGCATATTAGATAGAGAAAATGACA
2241 GATCTAGATGAAGGGAGCTTTTGGATGTGTGCCTTTAAAAACTGATTATGTATAAATACTGATATTTCACATACGGAGAT
2321 ATTTGAAGACCCAAGTCTGCCTTTCACAGAGCCCTCCATTCCAAGTTTAGTTTTTGTCAAAATATGAATCATTTTATTTG
2401 ACTGTACTATCAGTACACAAATGCATGAGTATGTTTATACAGTGTTAGACTGATGTGAATTTGCATTTGTTACATTACAT
2481 TGCCAGCGCATATCATTTAGCAAGTTGGCATTAACATTTATGCTTTAATTAAATGCCAGTATACCTATGTGTGCAGCAGT
2561 AAAAAATTAGTGAGAAAAAGCAACTTTTTGTCACTCTTAGGAAATATTTTGTCTTATTAGTGTTCTTGGCACATGTATAT
2641 TACTAAAGTAGATAATTCCAATGAGAAATACTACCAGATTATTGTTATAAAATTAATTTACAATGTCCCTGATATTGAGC
2721 TAACTCTTAAAAAAACCAAACAAAACTCGTATCTGAGTGTAACTTTGCCAATATTTTAAAAGCCAAAATATTCTCTGGAC
2801 AACAAATTTGTATTGCTCAGGGACAGTTTACCTTGCCTGGTAAACCTTCCCAAACAGAAATATAGCTATACTATCTTTGG
2881 TTTTGTTTTTTTGTTTTTTTTGTTTGTTTGTATTAGATGGAATTTCACTCTTGTCGCCCAGGCTGGAGTGTAGTGGCGCA
2961 GTCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGTCTCAGCTCCCTGAGTAACTGGAATTACAGG
3041 TGCACGCCACCACGCCCGGCTAATTTTTGTGTTTTTAGCAGAGACAGGGTTTCACCACGTTGGCCAGGGTGGTCTTGGAC
3121 TCCTGACCTCAGGTCATCCTCCTGCCTCGGCCTCCCAAAGTGCTGAGACTACAGGTGTGAGCCACCGTGCTCAGCCACTA
3201 GCTTTGGTTTTTTAAACATAGATTATATTCCTCAAGATGAAGGGCTTAACATATCCACAGCTTCCTCAGTTTGCTAACTC
3281 CCCATGCATCTTTGTGAAGGACAGTATCTAGTTTATCTGTAGGTCAGTGTTCCTTGTGCTGTCATTTCCCTTATATCTGG
3361 AATTTGTCAGCATTCCTGAAAACCTACACGTGTATATCAGTAACCAAAATGCTATGCCTTTTTTGCACCTTTGTACAGCA
3441 GCCAAATCATGAACTCAAAATGTATTTGATCACAGTTCTATAATGTTTTTACCTACCTATTATGGAATAATCAGTTTTTA
3521 CAGAGATTATTAATATGGTAGAACCCTGTTATGTAATTCCAAAACTTAAGAACCATATTTACATTGCTTAACACAGAATT
3601 TTACATCTAAGCAAGGACTGGCTTTAGAAGCAGTGTAGTTCTACCTCTCATTTTACAGATGAGAAAACCGAAGCCCAGAA
3681 AAACTCTCATTTGCTCAAAGTCACAGAGAAAATTAGTGGCAAAGCCAAAAAGATTCAGATCTTCTGACTCGAAGTTGAGA
3761 GTTCTTTATACTCTATTATGCTGCCTCTCCAGTGTAATATTTGCCTTTCTGTAAATGGGATTAAATATGATTTGTAAATA
3841 AAGGACATCTGACCTCCTTTTTTGGTACATTAAGGCACTTTATAAATGGACTTTTATTGTCTCATTTTTCGTATATAATT
3921 ATTTCCATCATATTCTTTATGGAAGATGCAATTAATTTTAACTTTTTTACTCTTATAAAACCAGTTCCTGACATTTTAAA
4001 AAACAATATCTGTAAAATGGATCCTTTTATGAGTGAATTTTTCTGCTAATTGCCCAAGGCTAAATCCAATTTAAGGATTG
4081 CTTAGTTTCTTTATTTTGTTTATGGTCTCTGAACTGGTATTTTTTTATAAACCAGGCTAATTCACAGGTCATACCATTTC
4161 ATTCTTGTCGTGTTGGCTTCCAGTCACTGGAAAAGCTTTTGCATTTTAAAGATTTTTAGAGCCATGCAAAACTGGGCATT
4241 AAATGTTGCATAAAGCAAATCTTTTAAGTAAGGTAAAATGTTGAAGTCTTAACCAGAATTCCTACAACTAATTACTAAAA
4321 CTGCTATTTCTAACTCTTCATGAAAGCATTACCTTTGGAAAGTTAAACTTTTTTTTTCCTTTCATCACCGTCTTTGAAAC
4401 AAATTATTTTCCAATTCATAAGAACTTTGGTAAAAAAAAAAATAAAAGGAAATTATATGTTTTTCTTTGGACATTCATTG
4481 GAAGGCTTGTTGAAGACATGATCCCCCAGAAGCCTTAGTGACCCAGATCTCAACCAGAGACTCAAGATAGCCTCAAATAC
4561 AGTGAAAGATTATGTATCCAAAAAAAAAAAAAAAAAAAAAAGAAAAGGAGCAGGGAAGGACAGTTCTAGTTAAAGCCAAA
4641 TGGATGTGAGTCTGACAAGGGTGTCTTTGATTTATATTTCCTAACTGCAAATTACACAGAAAGTGAGAATGGGGAATAAC
4721 TTTTATTAAGTATTTATGTGCCAGGCGGTTAGTGTGGCCTTCATGTTATTACATTTAATCCTCAAATTTCTACAAAGGAA
4801 TAATTTTGCATGATTTTATGATTGACGGAGCATTTTCAAATCTCCTCTAATTCTCATAACATCTCTGTGAGGAAGGAATT
4881 TTTATCCTTATTTTACAGATGAGGAAGCTGTTTGGAGATAATTTAAGTGACTTGCCTGGGGAATCTAGCCAGTAGTAGAG
4961 TACTGATTAATCAGGTGCTGACATCTGCTCTGCTTTGTGTATGTAATTCAGCAGTGCTTCAAAGATCCAAGAAGCTGTAG
5041 CAGATCTCAATACACTCTCCTATAAAATTAGTGAATAATCACCATGACAAAATTGGTATGGCGGAACAGTCATTATACAT
5121 TATTTAGACTCATTCCTTCTTCCAGTGCCCTTATGATTATTTCCTACCTTTACCATTGATCTTAAACTGTGCAGGCTAAA
5201 AAGAGGAACCAGAACTCCCTTAAGCACTTTTAAGACTATTTAAAAAATAAAGTTTTGTTGGCATTGAAGAGTAAGCTGCT
5281 TAAGGGACTGAATGAAAAGATAGTACCCTTTGTGGCTGTATGAAGAGAGAAACTGAATTTCTATCCAAGAGACCTTAATT
5361 TAGTTTATTAGGGAATTATCTTCCCCAAAAGTACAAGTAATTTTGCACTGCAGGAGAAGGATAAGTAGATTTGATTTACA
5441 TCACATTTTATACACACCTTTCAAAAGGAAGAAATCTGTTTCATAAATAGTAGTAATCTATGCTTAAACTTAACATTTAA
5521 TGTTGACTTCTTACAACAGCCTTGAAAATTATTTGTAATTTTGATCATGATGTTGGAAAGCTTGTAATAAAGAATATCTT
5601 TCTCTTCTGCATCCTTTTATCCTCAAACTTAGCATGGATTCACATGCTGAGTAAATGTTTGGTTAACTAGTGAACATTTT
5681 AGATAGTTGTGTCAAAAATAAGGGTTAGGGATAGGTAAAACCAGTAATTTACTGTTTTTTACAGAAGACATCTCAGCATT
5761 TCTTTGGCATTTTTGCACAAATAAATGACTATATATTCACCTTGGCCATTTTTTTTTTTAAGTAGCCCTATGAGCTGCTC
5841 ATTCTTTTTCATATACAGTGGAAGTATACAGATGTTATCCATTTTACAAATTGTTGGATCGGAATTTGACAGAATTGGGA
5921 CTGTGGAACCTGGGTCACTTGAATTTTCTATATTTTGTATGGCCAAATCAGGAACCAGACAGTCTCCATAGTCTCCTTTG
6001 TTTTTATGGAAAATTGCCATATTCACATATTTCATTTATCCTAATGTATTGTCATCCAAAATGAAAGAGGTCTTTCTTGA
6081 AGGTGCTTTAAAGACATCACTACATGTATTCAATTACTGATTTAAATATTCCCAGAATTATTTTTTACCTTTCTCTTTTT
6161 CCTCTCAAACACAAAATTTTAGTAGTACCTCCCTCTATTTCTTCACTGATTTTTCATCTGTTTTCATTGTTATTTCCACT
6241 ATAGAACTTCTACTTTATACTAGCGGGGAAAATTTTTTTATTTAGAATTTTAATATTTGAATTTTGTTTATGTATCACAT
6321 ACTGTGCTACAGTTAGCCTCAATGAAGATTCTATTTTGAACTAGACATCCTGTCAATAGTTTGTCAAGTAACTTCATTGC
6401 TTCCTTTGATAGCAATTCAGTGAAATTTTTTCCCAAGTGATATTTTCCCCCAACTTTTGTGAGTTTGATAAATAGGATGA
6481 GTCTTTTATATTGGAAATACTGTGAATGGAAAATTGCCAAATCCCTTCTTAGTATATTTTAAGCACCCTACAACACTTTA
6561 CCTCCCTGCCTTTAGTGGTATTTAAACATATGGCCAAGTTAGTATTTGGGTTTGATTCCTTTGGTGAAGATTAAGGCATC
6641 AAAACATTTCTTAAAATGTTTGAGTACAAGGCTAAGTTATAATGTCAACTTTCAAAGACTATGTTGTGATTCGGTTTGAA
6721 TATGCTGAAGTGAGCAATTATGATTTGCCCAAGTGCAATACAACAAATCTATAATGTATATTTCACATTTTCTACTTGAA
6801 CACATTCATGTATATATTTTGTTAAACTTCATATGTATTTAAAAAGAATCATGAACTGTATCAAAATTCTTTCAATAAAA
6881 TTTCTATTTAAAAATCTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccguagUCUGAUGAAUUUACUc 5'
                |||: |:||||:||| 
Target 5' gtttggAGATAATTTAAGTGAc 3'
 4910 - 4931 148.00 -9.80
2 
miRNA  3' ccGUAG-UCUGAUGA---AUUUACUc 5'
            |||: ||:| |||   ||||||: 
Target 5' taCATTAAGGC-ACTTTATAAATGGa 3'
 3866 - 3890 143.00 -10.80
3 
miRNA  3' ccGU-AGUCUG--AUGAAUUUACuc 5'
            || |:| :|  || |||||||  
Target 5' aaCATTTATGCTTTAATTAAATGcc 3'
 2513 - 2537 138.00 -6.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN23519392 12 COSMIC
COSN30182366 34 COSMIC
COSN30449990 46 COSMIC
COSN31483900 56 COSMIC
COSN30131555 58 COSMIC
COSN20875624 59 COSMIC
COSN30139005 65 COSMIC
COSN31571767 91 COSMIC
COSN31521806 458 COSMIC
COSN23421713 468 COSMIC
COSN26602722 607 COSMIC
COSN1395350 733 COSMIC
COSN16432390 918 COSMIC
COSN31595139 935 COSMIC
COSN8882621 936 COSMIC
COSN24297516 1025 COSMIC
COSN22240431 1387 COSMIC
COSN25992976 1684 COSMIC
COSN31530156 1818 COSMIC
COSN31582546 1913 COSMIC
COSN20703498 1997 COSMIC
COSN15002171 2034 COSMIC
COSN26720243 2062 COSMIC
COSN20095086 2160 COSMIC
COSN31555028 2219 COSMIC
COSN17527166 2309 COSMIC
COSN20090292 2311 COSMIC
COSN217013 2737 COSMIC
COSN14840663 3055 COSMIC
COSN19216359 3132 COSMIC
COSN1395351 3276 COSMIC
COSN14495372 4599 COSMIC
COSN29132410 4603 COSMIC
COSN5729358 4692 COSMIC
COSN1395352 4887 COSMIC
COSN20694710 5270 COSMIC
COSN30437905 5302 COSMIC
COSN21173437 5635 COSMIC
COSN29042955 5820 COSMIC
COSN21087386 5979 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs147461172 1 dbSNP
rs1440420533 5 dbSNP
rs375040777 7 dbSNP
rs745942746 8 dbSNP
rs1257771170 9 dbSNP
rs1400710367 18 dbSNP
rs769827798 20 dbSNP
rs780163776 22 dbSNP
rs749803365 23 dbSNP
rs1333303906 24 dbSNP
rs1302643641 25 dbSNP
rs1001037791 26 dbSNP
rs202151278 27 dbSNP
rs762109416 34 dbSNP
rs1368231311 37 dbSNP
rs1277633267 38 dbSNP
rs771718988 44 dbSNP
rs1219788871 47 dbSNP
rs1264736827 49 dbSNP
rs1321191321 51 dbSNP
rs1201949661 52 dbSNP
rs538403564 55 dbSNP
rs1353556283 56 dbSNP
rs558621073 60 dbSNP
rs7512997 76 dbSNP
rs1025002330 83 dbSNP
rs10595928 85 dbSNP
rs151267300 85 dbSNP
rs373122516 87 dbSNP
rs1175361270 89 dbSNP
rs769844252 94 dbSNP
rs1431374912 96 dbSNP
rs969848810 98 dbSNP
rs1443289502 101 dbSNP
rs1251159016 103 dbSNP
rs980816425 106 dbSNP
rs1213328808 111 dbSNP
rs1458353587 116 dbSNP
rs1255608770 118 dbSNP
rs1237843902 124 dbSNP
rs534624505 126 dbSNP
rs190381720 127 dbSNP
rs1257089566 131 dbSNP
rs574022089 131 dbSNP
rs1233073955 133 dbSNP
rs1346354562 134 dbSNP
rs1310745198 135 dbSNP
rs1446940737 136 dbSNP
rs1375673260 137 dbSNP
rs149183895 142 dbSNP
rs1397562235 143 dbSNP
rs907731063 146 dbSNP
rs1432732166 147 dbSNP
rs940489604 155 dbSNP
rs1160499590 158 dbSNP
rs1234664713 160 dbSNP
rs1379901389 160 dbSNP
rs7550190 161 dbSNP
rs923063186 167 dbSNP
rs931684239 174 dbSNP
rs1200258887 175 dbSNP
rs1050101996 181 dbSNP
rs932019186 188 dbSNP
rs1240231257 189 dbSNP
rs903507748 192 dbSNP
rs773519422 193 dbSNP
rs936965345 212 dbSNP
rs1052087695 213 dbSNP
rs1415916140 218 dbSNP
rs1052619586 219 dbSNP
rs576574948 220 dbSNP
rs999749439 223 dbSNP
rs142405385 232 dbSNP
rs1362356604 244 dbSNP
rs756842584 255 dbSNP
rs1420377992 262 dbSNP
rs1384259658 278 dbSNP
rs35293308 279 dbSNP
rs1052307819 286 dbSNP
rs1440654203 288 dbSNP
rs893553951 290 dbSNP
rs1010628084 292 dbSNP
rs1013720067 292 dbSNP
rs1023394874 292 dbSNP
rs1265974063 296 dbSNP
rs1237022330 300 dbSNP
rs969428696 301 dbSNP
rs1278591771 304 dbSNP
rs1347510622 306 dbSNP
rs1281463165 311 dbSNP
rs1206119575 312 dbSNP
rs1211145463 330 dbSNP
rs112995660 344 dbSNP
rs1347528325 357 dbSNP
rs1003237020 359 dbSNP
rs1231210294 361 dbSNP
rs151315219 364 dbSNP
rs1342215314 372 dbSNP
rs560951305 379 dbSNP
rs1278613485 381 dbSNP
rs1436081122 388 dbSNP
rs1324637835 419 dbSNP
rs1316260747 444 dbSNP
rs1046979743 449 dbSNP
rs1391710860 453 dbSNP
rs905281126 453 dbSNP
rs748675693 457 dbSNP
rs1247272536 459 dbSNP
rs527756313 467 dbSNP
rs541465370 468 dbSNP
rs1394238589 473 dbSNP
rs1475351101 475 dbSNP
rs141899602 492 dbSNP
rs1169221889 493 dbSNP
rs1393732199 496 dbSNP
rs530060123 501 dbSNP
rs1006168862 502 dbSNP
rs1014861404 510 dbSNP
rs745482966 521 dbSNP
rs550099409 522 dbSNP
rs569921236 525 dbSNP
rs973436242 540 dbSNP
rs1217816516 544 dbSNP
rs1337329522 556 dbSNP
rs532343819 572 dbSNP
rs923063452 576 dbSNP
rs114417061 581 dbSNP
rs931963668 586 dbSNP
rs1325322368 608 dbSNP
rs1051796380 609 dbSNP
rs1229412397 612 dbSNP
rs147034878 619 dbSNP
rs911796875 634 dbSNP
rs1409803923 637 dbSNP
rs1417975050 640 dbSNP
rs986280272 646 dbSNP
rs1478645494 648 dbSNP
rs1251769867 662 dbSNP
rs1191225613 663 dbSNP
rs534395259 665 dbSNP
rs771050609 671 dbSNP
rs796722105 674 dbSNP
rs1197753155 683 dbSNP
rs529626026 683 dbSNP
rs924997618 699 dbSNP
rs1195344402 703 dbSNP
rs1290679853 704 dbSNP
rs1469815316 707 dbSNP
rs1219681899 708 dbSNP
rs1010765513 709 dbSNP
rs1302715467 712 dbSNP
rs554177973 725 dbSNP
rs1332366204 746 dbSNP
rs1044822000 751 dbSNP
rs12048777 756 dbSNP
rs544475078 764 dbSNP
rs904962234 779 dbSNP
rs1003616764 781 dbSNP
rs914174242 785 dbSNP
rs1171161171 787 dbSNP
rs1441051239 790 dbSNP
rs1380527708 792 dbSNP
rs1176203840 794 dbSNP
rs12048780 795 dbSNP
rs1238941785 803 dbSNP
rs567709020 806 dbSNP
rs951123337 807 dbSNP
rs1046568140 811 dbSNP
rs1278169758 815 dbSNP
rs905352300 816 dbSNP
rs536594108 817 dbSNP
rs1310083114 825 dbSNP
rs1015143365 826 dbSNP
rs1048942342 827 dbSNP
rs1396016151 831 dbSNP
rs973565492 844 dbSNP
rs1449262771 860 dbSNP
rs1375347051 862 dbSNP
rs1311652189 863 dbSNP
rs1422068040 867 dbSNP
rs1324385521 872 dbSNP
rs1394240801 873 dbSNP
rs888501794 874 dbSNP
rs779771049 880 dbSNP
rs987872932 895 dbSNP
rs1182211460 905 dbSNP
rs775371714 906 dbSNP
rs911856141 907 dbSNP
rs1218614385 910 dbSNP
rs181056744 912 dbSNP
rs961962077 913 dbSNP
rs997833857 914 dbSNP
rs1284869063 921 dbSNP
rs1315314520 925 dbSNP
rs1292345099 928 dbSNP
rs576628030 929 dbSNP
rs1355150111 931 dbSNP
rs988025802 935 dbSNP
rs1402349907 941 dbSNP
rs1336955335 947 dbSNP
rs1341719148 948 dbSNP
rs1287751552 956 dbSNP
rs1451058789 957 dbSNP
rs539244424 961 dbSNP
rs1231413680 962 dbSNP
rs1460597635 965 dbSNP
rs1030202705 966 dbSNP
rs1195605698 968 dbSNP
rs1478084097 969 dbSNP
rs1185978104 970 dbSNP
rs1260998975 970 dbSNP
rs953316933 971 dbSNP
rs1168315940 972 dbSNP
rs1172511791 972 dbSNP
rs1220894124 972 dbSNP
rs1248665569 972 dbSNP
rs1269497894 972 dbSNP
rs1293618239 972 dbSNP
rs1308577566 972 dbSNP
rs1391875510 972 dbSNP
rs1434839992 972 dbSNP
rs1439643174 972 dbSNP
rs1465986861 972 dbSNP
rs1466848410 972 dbSNP
rs375847322 972 dbSNP
rs549034728 972 dbSNP
rs567101202 972 dbSNP
rs750798538 972 dbSNP
rs757503241 972 dbSNP
rs757736165 972 dbSNP
rs985928150 972 dbSNP
rs1194378322 973 dbSNP
rs1272420962 974 dbSNP
rs1251425590 976 dbSNP
rs1465272775 977 dbSNP
rs1206711932 978 dbSNP
rs1251112873 979 dbSNP
rs1259392736 981 dbSNP
rs1446125513 983 dbSNP
rs1187739098 984 dbSNP
rs1419390747 987 dbSNP
rs925037388 989 dbSNP
rs1368302351 994 dbSNP
rs10604120 995 dbSNP
rs1163426120 995 dbSNP
rs1395417493 999 dbSNP
rs867195210 999 dbSNP
rs1296264565 1001 dbSNP
rs1454760682 1002 dbSNP
rs1291063462 1004 dbSNP
rs1453926036 1007 dbSNP
rs1383188154 1010 dbSNP
rs915187860 1011 dbSNP
rs1381868525 1015 dbSNP
rs1180672194 1027 dbSNP
rs957760723 1030 dbSNP
rs562784632 1031 dbSNP
rs1419911711 1047 dbSNP
rs946521706 1048 dbSNP
rs1194470334 1055 dbSNP
rs1044941475 1068 dbSNP
rs1281728767 1074 dbSNP
rs1313671440 1079 dbSNP
rs1209505038 1095 dbSNP
rs754560131 1098 dbSNP
rs1357472945 1118 dbSNP
rs369884062 1121 dbSNP
rs1231584635 1126 dbSNP
rs904940285 1131 dbSNP
rs987772122 1145 dbSNP
rs1056625402 1151 dbSNP
rs1304564706 1166 dbSNP
rs1397619045 1174 dbSNP
rs1329846844 1178 dbSNP
rs1375980793 1179 dbSNP
rs1241081906 1193 dbSNP
rs886749893 1200 dbSNP
rs1003852226 1204 dbSNP
rs1015110805 1211 dbSNP
rs760669944 1211 dbSNP
rs1160553420 1212 dbSNP
rs1470611394 1214 dbSNP
rs913538456 1221 dbSNP
rs558862742 1223 dbSNP
rs1200704115 1224 dbSNP
rs138320236 1225 dbSNP
rs768475827 1229 dbSNP
rs926837994 1236 dbSNP
rs938189983 1237 dbSNP
rs541530716 1239 dbSNP
rs184266082 1246 dbSNP
rs1205250711 1247 dbSNP
rs940052362 1263 dbSNP
rs1349479620 1276 dbSNP
rs574891617 1281 dbSNP
rs901169937 1282 dbSNP
rs1246713826 1288 dbSNP
rs543796929 1290 dbSNP
rs1355781395 1293 dbSNP
rs987537737 1304 dbSNP
rs142413129 1310 dbSNP
rs1161830912 1314 dbSNP
rs1362454925 1315 dbSNP
rs956665772 1326 dbSNP
rs988171479 1327 dbSNP
rs1030650758 1329 dbSNP
rs150212673 1335 dbSNP
rs1157116307 1338 dbSNP
rs1463213671 1340 dbSNP
rs1418954487 1352 dbSNP
rs1377542394 1353 dbSNP
rs3087816 1363 dbSNP
rs1266037259 1373 dbSNP
rs138809907 1399 dbSNP
rs1374075656 1408 dbSNP
rs189957716 1416 dbSNP
rs1259067904 1423 dbSNP
rs1211209051 1425 dbSNP
rs1335104644 1430 dbSNP
rs957793040 1442 dbSNP
rs1272267032 1444 dbSNP
rs1417950691 1447 dbSNP
rs1319880929 1450 dbSNP
rs1304726786 1466 dbSNP
rs1431565458 1470 dbSNP
rs987844343 1479 dbSNP
rs1325861276 1500 dbSNP
rs547877264 1501 dbSNP
rs567768381 1502 dbSNP
rs1334969887 1511 dbSNP
rs970784940 1512 dbSNP
rs1282198143 1513 dbSNP
rs1448419820 1518 dbSNP
rs1422266335 1522 dbSNP
rs181179847 1533 dbSNP
rs771172414 1537 dbSNP
rs886882271 1538 dbSNP
rs1194991142 1546 dbSNP
rs926884089 1548 dbSNP
rs1252040037 1550 dbSNP
rs938236065 1570 dbSNP
rs1458973548 1575 dbSNP
rs1481306053 1580 dbSNP
rs1179486874 1586 dbSNP
rs550133482 1592 dbSNP
rs1337391867 1594 dbSNP
rs1268450382 1597 dbSNP
rs1418975653 1599 dbSNP
rs899420900 1602 dbSNP
rs776881147 1607 dbSNP
rs1325562731 1608 dbSNP
rs940125724 1624 dbSNP
rs570356595 1633 dbSNP
rs1356586795 1635 dbSNP
rs753515530 1635 dbSNP
rs1037099721 1644 dbSNP
rs1409859019 1646 dbSNP
rs1395014293 1653 dbSNP
rs1174945806 1656 dbSNP
rs901204198 1661 dbSNP
rs889259435 1666 dbSNP
rs1191291162 1671 dbSNP
rs1009495541 1682 dbSNP
rs112441610 1690 dbSNP
rs1203596041 1703 dbSNP
rs934000148 1713 dbSNP
rs1463543341 1722 dbSNP
rs1049727425 1723 dbSNP
rs1213106807 1724 dbSNP
rs1348598694 1729 dbSNP
rs1302789987 1731 dbSNP
rs1232310238 1733 dbSNP
rs1019018541 1734 dbSNP
rs538949018 1735 dbSNP
rs1375841722 1738 dbSNP
rs1280474928 1741 dbSNP
rs956811152 1742 dbSNP
rs1334492270 1750 dbSNP
rs1315436437 1753 dbSNP
rs1435883457 1754 dbSNP
rs1372608579 1756 dbSNP
rs759782642 1758 dbSNP
rs889034082 1759 dbSNP
rs1171225284 1763 dbSNP
rs1402042991 1771 dbSNP
rs559148883 1774 dbSNP
rs548264813 1775 dbSNP
rs1176399654 1788 dbSNP
rs1032173522 1790 dbSNP
rs1368437289 1791 dbSNP
rs1468471290 1792 dbSNP
rs17123572 1799 dbSNP
rs980685595 1800 dbSNP
rs1485319140 1806 dbSNP
rs1279656035 1807 dbSNP
rs1308873418 1809 dbSNP
rs1009297062 1811 dbSNP
rs764755731 1815 dbSNP
rs1020672522 1816 dbSNP
rs1250261898 1819 dbSNP
rs149287565 1826 dbSNP
rs555112087 1848 dbSNP
rs574949255 1850 dbSNP
rs1214800044 1853 dbSNP
rs1295514246 1857 dbSNP
rs750111529 1864 dbSNP
rs982185574 1875 dbSNP
rs369438465 1883 dbSNP
rs1415882509 1887 dbSNP
rs959923790 1889 dbSNP
rs1355416817 1892 dbSNP
rs144571038 1894 dbSNP
rs186128138 1897 dbSNP
rs940156988 1902 dbSNP
rs939812453 1904 dbSNP
rs972867680 1906 dbSNP
rs372976179 1914 dbSNP
rs1419704945 1920 dbSNP
rs1165425156 1921 dbSNP
rs866536587 1931 dbSNP
rs190454832 1939 dbSNP
rs1255382199 1947 dbSNP
rs932320080 1950 dbSNP
rs934052143 1952 dbSNP
rs17449022 1955 dbSNP
rs1242776841 1956 dbSNP
rs112056403 1959 dbSNP
rs181586429 1960 dbSNP
rs1327369220 1966 dbSNP
rs1168500334 1967 dbSNP
rs370400031 1969 dbSNP
rs1311292513 1973 dbSNP
rs1461902364 1974 dbSNP
rs1216835670 1977 dbSNP
rs1361968954 1980 dbSNP
rs552298685 1986 dbSNP
rs1428172311 1987 dbSNP
rs1053614214 1989 dbSNP
rs893694349 1999 dbSNP
rs1460778348 2011 dbSNP
rs1009372343 2012 dbSNP
rs1420256684 2014 dbSNP
rs892642683 2014 dbSNP
rs752148616 2018 dbSNP
rs1463686766 2019 dbSNP
rs757792844 2030 dbSNP
rs766969096 2039 dbSNP
rs1042161558 2044 dbSNP
rs1230200313 2054 dbSNP
rs561469721 2055 dbSNP
rs1212426649 2057 dbSNP
rs906280593 2060 dbSNP
rs1294201235 2075 dbSNP
rs1225615086 2087 dbSNP
rs1372713603 2092 dbSNP
rs1294245239 2095 dbSNP
rs1022402311 2099 dbSNP
rs1439710545 2110 dbSNP
rs1334847761 2111 dbSNP
rs1186052313 2118 dbSNP
rs1299685781 2123 dbSNP
rs1462397022 2125 dbSNP
rs968018311 2135 dbSNP
rs749952971 2145 dbSNP
rs1033802084 2148 dbSNP
rs143913938 2158 dbSNP
rs397780878 2158 dbSNP
rs397861582 2158 dbSNP
rs1275538123 2159 dbSNP
rs1194442861 2165 dbSNP
rs1033588684 2172 dbSNP
rs960940682 2174 dbSNP
rs959051285 2179 dbSNP
rs1481235732 2187 dbSNP
rs1251302934 2190 dbSNP
rs1005834601 2197 dbSNP
rs1280431753 2203 dbSNP
rs961201792 2203 dbSNP
rs138126852 2218 dbSNP
rs1329025784 2221 dbSNP
rs1308840261 2228 dbSNP
rs1391805868 2237 dbSNP
rs1372508808 2247 dbSNP
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rs1486981815 2254 dbSNP
rs1017211643 2268 dbSNP
rs932314068 2271 dbSNP
rs961598694 2286 dbSNP
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rs113365939 2297 dbSNP
rs570345634 2306 dbSNP
rs955679561 2315 dbSNP
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rs369291054 2324 dbSNP
rs866889293 2330 dbSNP
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rs1263238018 2500 dbSNP
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rs985979505 2646 dbSNP
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rs1364714528 2689 dbSNP
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rs897105454 2772 dbSNP
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rs978016081 2782 dbSNP
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rs1368110339 2820 dbSNP
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rs1434914651 2846 dbSNP
rs1055343166 2850 dbSNP
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rs1213214520 2891 dbSNP
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rs577166134 2894 dbSNP
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rs967337673 2997 dbSNP
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rs1443631796 3215 dbSNP
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rs1324261115 3260 dbSNP
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rs919031124 5151 dbSNP
rs1472422161 5154 dbSNP
rs1389363011 5158 dbSNP
rs1023239999 5165 dbSNP
rs970257029 5166 dbSNP
rs41306169 5167 dbSNP
rs973575088 5168 dbSNP
rs532031426 5175 dbSNP
rs1165179185 5178 dbSNP
rs1437434115 5179 dbSNP
rs773754999 5180 dbSNP
rs950903417 5182 dbSNP
rs760144604 5184 dbSNP
rs761464291 5186 dbSNP
rs1157632920 5187 dbSNP
rs983538510 5193 dbSNP
rs535473857 5196 dbSNP
rs1375544541 5199 dbSNP
rs911911176 5204 dbSNP
rs944738452 5205 dbSNP
rs1243135418 5206 dbSNP
rs1436093355 5210 dbSNP
rs1314567474 5240 dbSNP
rs1291446193 5241 dbSNP
rs1246219604 5257 dbSNP
rs1358349268 5262 dbSNP
rs1312629041 5270 dbSNP
rs765868884 5270 dbSNP
rs1230424523 5276 dbSNP
rs1365675705 5277 dbSNP
rs1288164718 5279 dbSNP
rs1428589192 5285 dbSNP
rs1038988474 5294 dbSNP
rs548940112 5302 dbSNP
rs1039962670 5307 dbSNP
rs899971004 5311 dbSNP
rs932538347 5316 dbSNP
rs1331585459 5319 dbSNP
rs1425517326 5321 dbSNP
rs1384916803 5351 dbSNP
rs1161912480 5355 dbSNP
rs1451659933 5365 dbSNP
rs1357987719 5389 dbSNP
rs569083166 5392 dbSNP
rs1186407857 5395 dbSNP
rs1485202038 5395 dbSNP
rs1247926321 5397 dbSNP
rs77270027 5399 dbSNP
rs10493941 5409 dbSNP
rs1289063648 5411 dbSNP
rs998866854 5412 dbSNP
rs999037761 5412 dbSNP
rs1212710212 5413 dbSNP
rs1369707630 5414 dbSNP
rs1276682195 5423 dbSNP
rs1405559413 5424 dbSNP
rs1365054006 5426 dbSNP
rs1331093248 5429 dbSNP
rs1052885331 5441 dbSNP
rs893144405 5445 dbSNP
rs1355450765 5455 dbSNP
rs895530159 5457 dbSNP
rs1022900525 5472 dbSNP
rs1348836991 5473 dbSNP
rs971185665 5474 dbSNP
rs1266187553 5475 dbSNP
rs981268758 5491 dbSNP
rs1026012766 5511 dbSNP
rs1013923278 5514 dbSNP
rs1313742453 5515 dbSNP
rs1022602478 5519 dbSNP
rs950509841 5536 dbSNP
rs906147735 5541 dbSNP
rs995085405 5544 dbSNP
rs1027848508 5546 dbSNP
rs1239808684 5570 dbSNP
rs1374407801 5573 dbSNP
rs976053294 5599 dbSNP
rs1460727406 5600 dbSNP
rs761161764 5602 dbSNP
rs1177731059 5603 dbSNP
rs376440603 5605 dbSNP
rs369696645 5608 dbSNP
rs1478799383 5614 dbSNP
rs1170313516 5632 dbSNP
rs1183780473 5635 dbSNP
rs1423776161 5657 dbSNP
rs983997633 5662 dbSNP
rs1175131047 5663 dbSNP
rs1484085327 5666 dbSNP
rs1243564854 5668 dbSNP
rs1202927147 5677 dbSNP
rs527688175 5688 dbSNP
rs1261322619 5691 dbSNP
rs1019048160 5693 dbSNP
rs1414430873 5694 dbSNP
rs113937881 5699 dbSNP
rs1306492269 5703 dbSNP
rs974724785 5706 dbSNP
rs921931060 5708 dbSNP
rs932612420 5721 dbSNP
rs1353516894 5726 dbSNP
rs1385396619 5749 dbSNP
rs546675569 5752 dbSNP
rs1452530402 5757 dbSNP
rs542665616 5765 dbSNP
rs1331097572 5768 dbSNP
rs548321168 5776 dbSNP
rs1054559983 5778 dbSNP
rs925831809 5779 dbSNP
rs1216036412 5788 dbSNP
rs142318430 5797 dbSNP
rs1453777501 5804 dbSNP
rs1362729545 5806 dbSNP
rs143243660 5808 dbSNP
rs376906224 5809 dbSNP
rs552212617 5809 dbSNP
rs777294591 5809 dbSNP
rs1243509200 5810 dbSNP
rs1182820879 5812 dbSNP
rs544887089 5814 dbSNP
rs564577521 5820 dbSNP
rs111354969 5831 dbSNP
rs1044123109 5842 dbSNP
rs1215110123 5848 dbSNP
rs1486211138 5850 dbSNP
rs570627651 5855 dbSNP
rs1237124437 5857 dbSNP
rs1002658645 5858 dbSNP
rs1245610756 5860 dbSNP
rs12726628 5864 dbSNP
rs758324781 5867 dbSNP
rs1197850807 5875 dbSNP
rs1027922185 5882 dbSNP
rs1286663001 5890 dbSNP
rs886667499 5891 dbSNP
rs1162546339 5894 dbSNP
rs151272297 5901 dbSNP
rs529328085 5902 dbSNP
rs1019498124 5908 dbSNP
rs966189332 5911 dbSNP
rs1193768508 5930 dbSNP
rs1427895867 5931 dbSNP
rs1261108612 5932 dbSNP
rs1245648146 5934 dbSNP
rs1490862147 5936 dbSNP
rs1475486032 5949 dbSNP
rs974798286 5952 dbSNP
rs1222051109 5953 dbSNP
rs1357687802 5955 dbSNP
rs548997501 5963 dbSNP
rs1172159517 5967 dbSNP
rs1228767222 5970 dbSNP
rs974470807 5976 dbSNP
rs1292823644 5980 dbSNP
rs35128906 5986 dbSNP
rs762753937 5991 dbSNP
rs1464505333 5996 dbSNP
rs1170424409 5998 dbSNP
rs1302090753 5999 dbSNP
rs1422403682 6008 dbSNP
rs1028976275 6019 dbSNP
rs766142938 6023 dbSNP
rs751047961 6025 dbSNP
rs955571993 6028 dbSNP
rs987059227 6039 dbSNP
rs925893799 6042 dbSNP
rs1198934240 6045 dbSNP
rs777823378 6045 dbSNP
rs1489935538 6060 dbSNP
rs766226835 6066 dbSNP
rs934537986 6067 dbSNP
rs924745003 6074 dbSNP
rs1338354279 6077 dbSNP
rs1339148895 6080 dbSNP
rs1217868377 6083 dbSNP
rs187395171 6085 dbSNP
rs1358143409 6106 dbSNP
rs1054930878 6107 dbSNP
rs1207824354 6123 dbSNP
rs11555028 6139 dbSNP
rs1402701869 6141 dbSNP
rs914690724 6142 dbSNP
rs751687350 6149 dbSNP
rs1409095365 6156 dbSNP
rs1394094877 6162 dbSNP
rs1178450678 6165 dbSNP
rs1470284419 6166 dbSNP
rs1447216114 6190 dbSNP
rs1430052240 6192 dbSNP
rs1195293411 6193 dbSNP
rs1477160091 6202 dbSNP
rs1234754550 6220 dbSNP
rs1044413972 6224 dbSNP
rs1437562489 6227 dbSNP
rs531551545 6228 dbSNP
rs907215870 6238 dbSNP
rs1002709348 6242 dbSNP
rs1047649457 6247 dbSNP
rs917052336 6253 dbSNP
rs15862 6265 dbSNP
rs192294462 6266 dbSNP
rs1352234562 6268 dbSNP
rs1369428887 6270 dbSNP
rs1441065867 6273 dbSNP
rs41309201 6282 dbSNP
rs533991098 6286 dbSNP
rs1405348451 6287 dbSNP
rs1390373276 6310 dbSNP
rs930297639 6313 dbSNP
rs1174191684 6322 dbSNP
rs995931565 6327 dbSNP
rs1029969573 6329 dbSNP
rs954373924 6330 dbSNP
rs1420522732 6331 dbSNP
rs1049181377 6332 dbSNP
rs1300122130 6341 dbSNP
rs924882356 6343 dbSNP
rs956389737 6351 dbSNP
rs553981114 6354 dbSNP
rs914638836 6355 dbSNP
rs886705771 6368 dbSNP
rs1448182426 6375 dbSNP
rs1284390733 6380 dbSNP
rs1399352841 6384 dbSNP
rs1005531355 6392 dbSNP
rs1293886037 6395 dbSNP
rs1316886282 6411 dbSNP
rs567396139 6413 dbSNP
rs1044465414 6419 dbSNP
rs1381790810 6431 dbSNP
rs1342165012 6441 dbSNP
rs1242426744 6455 dbSNP
rs928609099 6460 dbSNP
rs1347010354 6463 dbSNP
rs1319128625 6468 dbSNP
rs1400332366 6469 dbSNP
rs1358779847 6470 dbSNP
rs1165711787 6475 dbSNP
rs1445564731 6482 dbSNP
rs938700801 6484 dbSNP
rs1040568523 6485 dbSNP
rs1476701124 6498 dbSNP
rs902003480 6503 dbSNP
rs886393495 6517 dbSNP
rs1293422745 6525 dbSNP
rs1222803576 6532 dbSNP
rs1358419161 6536 dbSNP
rs1310365948 6545 dbSNP
rs1216236909 6548 dbSNP
rs996269205 6549 dbSNP
rs1218253420 6550 dbSNP
rs1006465703 6551 dbSNP
rs1487646072 6556 dbSNP
rs1210950736 6559 dbSNP
rs1430032279 6562 dbSNP
rs1037502995 6566 dbSNP
rs1257531110 6571 dbSNP
rs1029038431 6580 dbSNP
rs995897148 6581 dbSNP
rs1163188389 6589 dbSNP
rs113128037 6592 dbSNP
rs1186460514 6603 dbSNP
rs1420765985 6603 dbSNP
rs1000836839 6616 dbSNP
rs1440583861 6622 dbSNP
rs1476527241 6680 dbSNP
rs555933096 6684 dbSNP
rs1031408740 6689 dbSNP
rs956007564 6694 dbSNP
rs1199661131 6699 dbSNP
rs200713518 6703 dbSNP
rs989131951 6713 dbSNP
rs575992621 6714 dbSNP
rs1263448927 6722 dbSNP
rs41313266 6728 dbSNP
rs1303499130 6736 dbSNP
rs1032330804 6741 dbSNP
rs1404345158 6742 dbSNP
rs1216754821 6746 dbSNP
rs558443450 6749 dbSNP
rs1285326934 6750 dbSNP
rs1405765983 6752 dbSNP
rs927047219 6754 dbSNP
rs1345189484 6770 dbSNP
rs930349910 6772 dbSNP
rs1444744027 6786 dbSNP
rs779166355 6791 dbSNP
rs1170315881 6804 dbSNP
rs907512843 6808 dbSNP
rs1464561247 6813 dbSNP
rs940989665 6815 dbSNP
rs1176603783 6827 dbSNP
rs1241897673 6827 dbSNP
rs1479825009 6828 dbSNP
rs1306687926 6834 dbSNP
rs1264751918 6842 dbSNP
rs548117643 6853 dbSNP
rs756403722 6857 dbSNP
rs902067354 6859 dbSNP
rs1484532781 6863 dbSNP
rs189199117 6863 dbSNP
rs796194534 6867 dbSNP
rs1325652998 6876 dbSNP
rs1050526831 6887 dbSNP
rs142577804 6895 dbSNP
rs559063100 6897 dbSNP
rs1140055 6900 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 148867.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000370112.4 | 3UTR | CAUUUCUUUGGCAUUUUUGCACAAAUAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000370112.4 | 3UTR | CAUUUCUUUGGCAUUUUUGCACAAAUAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
145 hsa-miR-5696 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057820 SLC30A7 solute carrier family 30 member 7 2 2
MIRT061215 MED17 mediator complex subunit 17 2 2
MIRT061275 IPO7 importin 7 2 2
MIRT087540 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT090979 DPH3 diphthamide biosynthesis 3 2 2
MIRT100413 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT108737 XIAP X-linked inhibitor of apoptosis 2 2
MIRT116191 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT185488 LBR lamin B receptor 2 2
MIRT239133 GLO1 glyoxalase I 2 2
MIRT314678 TMEM167A transmembrane protein 167A 2 4
MIRT365830 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT375653 VPS53 VPS53, GARP complex subunit 2 2
MIRT441652 DEK DEK proto-oncogene 2 2
MIRT442230 BTD biotinidase 2 2
MIRT443351 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT444349 KIAA1211 KIAA1211 2 2
MIRT444907 KIAA1841 KIAA1841 2 2
MIRT445301 PRR26 proline rich 26 2 2
MIRT446678 SMIM10 small integral membrane protein 10 2 2
MIRT449658 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 4
MIRT456346 OLIG3 oligodendrocyte transcription factor 3 2 8
MIRT466384 TGOLN2 trans-golgi network protein 2 2 4
MIRT467279 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT478065 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT479422 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT482866 SMIM12 small integral membrane protein 12 2 4
MIRT484696 RNF11 ring finger protein 11 2 2
MIRT497699 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT499111 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT500787 TLK1 tousled like kinase 1 2 6
MIRT504644 RPL9 ribosomal protein L9 2 6
MIRT505947 RAN RAN, member RAS oncogene family 2 6
MIRT513837 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT514437 C15orf59 chromosome 15 open reading frame 59 2 2
MIRT518810 AKAP8 A-kinase anchoring protein 8 2 4
MIRT519802 ZMYM2 zinc finger MYM-type containing 2 2 4
MIRT525377 SYNM synemin 2 2
MIRT525993 MAGEL2 MAGE family member L2 2 2
MIRT527715 SSC5D scavenger receptor cysteine rich family member with 5 domains 2 4
MIRT528057 OLAH oleoyl-ACP hydrolase 2 2
MIRT528636 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT529170 CCDC25 coiled-coil domain containing 25 2 2
MIRT529585 TMEM220 transmembrane protein 220 2 2
MIRT529806 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT531260 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT531428 MPZL3 myelin protein zero like 3 2 2
MIRT532139 ZNF331 zinc finger protein 331 2 2
MIRT532350 PLEK pleckstrin 2 2
MIRT533533 TPR translocated promoter region, nuclear basket protein 2 2
MIRT535822 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT539243 ANKRD50 ankyrin repeat domain 50 2 2
MIRT543556 RPF2 ribosome production factor 2 homolog 2 4
MIRT544899 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT545103 RAG1 recombination activating 1 2 2
MIRT549060 CALM1 calmodulin 1 2 2
MIRT550044 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT550055 MDM2 MDM2 proto-oncogene 2 2
MIRT550475 TMEM241 transmembrane protein 241 2 2
MIRT550654 ZFP37 ZFP37 zinc finger protein 2 2
MIRT553599 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT554614 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT555639 PHIP pleckstrin homology domain interacting protein 2 2
MIRT556262 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT558529 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT559171 BRAP BRCA1 associated protein 2 2
MIRT565206 TROVE2 TROVE domain family member 2 2 2
MIRT566063 RCC2 regulator of chromosome condensation 2 2 2
MIRT566721 MSL2 MSL complex subunit 2 2 2
MIRT566775 KIAA1804 mitogen-activated protein kinase kinase kinase 21 2 2
MIRT567594 FANCF Fanconi anemia complementation group F 2 2
MIRT568752 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT571253 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT573768 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT609525 AZI2 5-azacytidine induced 2 2 4
MIRT613118 EID1 EP300 interacting inhibitor of differentiation 1 2 2
MIRT613588 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 2 2
MIRT616958 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT622619 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 2
MIRT624015 EPHB1 EPH receptor B1 2 2
MIRT624709 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT625797 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT627957 NLK nemo like kinase 2 2
MIRT634868 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT635722 ALKBH4 alkB homolog 4, lysine demethylase 2 2
MIRT636107 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT636943 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637009 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT638057 YAE1D1 Yae1 domain containing 1 2 4
MIRT640158 CDK13 cyclin dependent kinase 13 2 2
MIRT640170 ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 2 2
MIRT640992 PROK2 prokineticin 2 2 2
MIRT641339 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT642042 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT642074 FUT11 fucosyltransferase 11 2 2
MIRT642101 FAM84B family with sequence similarity 84 member B 2 2
MIRT642348 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT642583 KIAA0101 PCNA clamp associated factor 2 2
MIRT644131 TRAPPC13 trafficking protein particle complex 13 2 2
MIRT646409 HLA-DRB1 major histocompatibility complex, class II, DR beta 1 2 2
MIRT646829 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT648356 AKIP1 A-kinase interacting protein 1 2 2
MIRT650019 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 2
MIRT650602 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 2 2
MIRT650727 TNFSF8 TNF superfamily member 8 2 2
MIRT651322 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652450 TMEM236 transmembrane protein 236 2 2
MIRT652676 TIGD2 tigger transposable element derived 2 2 2
MIRT652720 TGFBRAP1 transforming growth factor beta receptor associated protein 1 2 2
MIRT653517 SLC41A1 solute carrier family 41 member 1 2 2
MIRT654405 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT654655 PSPH phosphoserine phosphatase 2 2
MIRT654943 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT655062 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT656554 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT657666 GPR26 G protein-coupled receptor 26 2 2
MIRT659634 CDKN2AIP CDKN2A interacting protein 2 2
MIRT660584 APP amyloid beta precursor protein 2 2
MIRT664200 TBCA tubulin folding cofactor A 2 2
MIRT664577 CD44 CD44 molecule (Indian blood group) 2 2
MIRT665240 ZNF514 zinc finger protein 514 2 2
MIRT665248 ZNF362 zinc finger protein 362 2 2
MIRT666382 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT667264 NAV2 neuron navigator 2 2 2
MIRT668770 DCP2 decapping mRNA 2 2 2
MIRT668905 CREB1 cAMP responsive element binding protein 1 2 2
MIRT669411 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT672667 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT675818 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT690310 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT707804 TSPAN6 tetraspanin 6 2 2
MIRT709402 TADA2A transcriptional adaptor 2A 2 2
MIRT709982 RBM41 RNA binding motif protein 41 2 2
MIRT711203 SMIM14 small integral membrane protein 14 2 2
MIRT714928 ZNF264 zinc finger protein 264 2 2
MIRT717438 TENM1 teneurin transmembrane protein 1 2 2
MIRT717501 UFL1 UFM1 specific ligase 1 2 2
MIRT719812 TXNDC17 thioredoxin domain containing 17 2 2
MIRT720569 TMEM72 transmembrane protein 72 2 2
MIRT721192 FAIM3 Fc fragment of IgM receptor 1 1
MIRT721414 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721575 SLC5A12 solute carrier family 5 member 12 2 2
MIRT724675 NCAPG non-SMC condensin I complex subunit G 2 2
MIRT725507 FUT9 fucosyltransferase 9 2 2
MIRT725533 EN2 engrailed homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-5696 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-5696 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-5696 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-5696 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)

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