miRTarBase - #MIRT058861


—
pre-miRNA Information
pre-miRNA hsa-mir-6808   
Genomic Coordinates chr1: 1339650 - 1339708
Description Homo sapiens miR-6808 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6808-5p
Sequence 6| CAGGCAGGGAGGUGGGACCAUG |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs200363718 2 dbSNP
rs781187339 3 dbSNP
rs1175964401 5 dbSNP
rs377360440 9 dbSNP
rs1284899234 12 dbSNP
rs747433206 13 dbSNP
rs1431822851 14 dbSNP
rs1342544357 19 dbSNP
rs751585831 20 dbSNP
rs763913520 21 dbSNP
rs755106743 22 dbSNP
Putative Targets

Gene Information
Gene Symbol VANGL1   
Synonyms KITENIN, LPP2, STB2, STBM2
Description VANGL planar cell polarity protein 1
Transcript NM_001172411   
Other Transcripts NM_001172412 , NM_138959   
Expression
Putative miRNA Targets on VANGL1
3'UTR of VANGL1
(miRNA target sites are highlighted)		 
>VANGL1|NM_001172411|3'UTR
   1 AAGTTCTATATTTGTGGCTTTATTAAAAAAAAAAGAAAAATATATAGAGAGATATATATCTATGCCAGAGGGGTGTCTTT
  81 TTTAAAAATTCTTCTTCATTGCTGACTGAAACTGGCAGATGATTGACCAGTATCCTTTGACCATCTGCACTTTATTTGGA
 161 AGGAAGCAGGGGCTGTCCACCCTGAAAAAGAGTGACTGATGACATCTGACTTTTGTCGATGGGACTTCTCAAGAAGCCAT
 241 TCCTTGGAGCTTCTGTTACAGCTGTAAACCAAAGTGGAGCTGGTGCTTCTTGGGAGCCTCGCCTTACAACTAATTCCTGC
 321 CTTTCGTCCAGTACCAAGTCCCCCGTTGCTTCTGGTCAGCCCACTTGTAGACTTCCAGGGGACACATCTTTATTCTGTTT
 401 CAGGAAACCAGTCACGACACGTCCACATATGTATTTGTGTATGTTAATGTCCAGTATCACATCACCCATGAAAGTCGTGG
 481 GCAGTTCAGGAGATACCTGCCTTCATCTTTGTTCTTTGTTGCCTTAGGTTCTTCAGAGAAAGATCACAACAAAAAATGTA
 561 CACTGTCGTTTACAGCTATTAAGTGATTTGATTTTGTTTTTTTCCCAAAGAGAAAACCTACCTGCCCTGTTTCTGATCCC
 641 ACCCCTCTGCTGGCTTGAAGCAGGTAACCCTTTCCCAGCCCTGCAGCTGCCCACCTGGCCTCCATGCCATCCTGCCCCCA
 721 CCTGGCTGGCAGCCCTGGCTCTCCATGTGTGCCCTCCGGCTCTGTGTGAAGCCTCAAGTCAGTCCCAGCATTGTTTCCAT
 801 AGGGAAGTGTGGGGTGCCCAGCAGGTAAAGCACAGGGAGAGAGGGCAGTGGGAATGCCACCTTTAGGCTGCAGCAGGAGC
 881 CCCACACTGCCCAGTTTTCCTCCCCACTGTTCTACACCAACCAGGGGAGACTAACACTGTGACTCTGGGATTGGCAGGTG
 961 CAACTTGGAGCCACTTAATTTCCTGGGGACGTAAGTTCTTCCCAAGCTTAGAGCAAGCTGCCCTGCCAAAGGAGACCAAA
1041 CCATGCCAACCACGCTGGCAACTGCTGCTGTCCAGTCCCTGTGTTTTCTGACCACCGTCACTGTGCAACTCATCGCCTCT
1121 GCCACTTAGGACCAGGAAAGAGGCTGGTTTTGCTCCCACTCTTAGTTGCTGATAAAGTGGGGAGAAGGAAAATGGACACT
1201 CTACAGAGTTTGGGGAAGGGAGAGTAGGGAGCCCATCTTGTCCAGAAAGATTCATCTGTGGTCTGTCTGTTAAACACAGC
1281 TGATTTCAGTGGGCTTTCCCCTGGCCCTGGGGGAGCAGACACTGACTGGGTTGTGGGCAGAGGAGCCATCCTGGCGGAGC
1361 CCTGCTGCAGGGGAGCTCCTTCAGGAGCCCCATCCGGACCTCTTGCACTGGGCTGCCTTTGCCTCCATTTGCCTTCCTGT
1441 ATCTGCAACAAACCTTTTAAAAGTGTTCACTCTTGCTTTTTCCAGTATTTCGGTAATCAGCCATCTTGCTGTAGTACAGG
1521 ATGACATTGTCGAATGCTCTTTGTATGTGTGCACACCCCCTTACTCCCTTACTGCTTCATACACTCCACAAGTGGTACAG
1601 TATTTTGTGTCATTGTAAAAATCAAAATTGGCTTTGGATCTTTGTAATACACCTGTACCTGAAAAAGTAAACAACATTCT
1681 TCAATTACTAGCCTTCAGCTTGAAAAGACATGCTGGAGAAGAAGGAAGGGGGAACCCATAGGTGTGGCGTGGAGCCAAGA
1761 TGTACTATTCAACTATGTGTTTCTGTTTATAAAAAACACATACCATGGAACCATGGTGCTTTTGTTCTTAGTTTTTGCCG
1841 TTAGATCCCTTCAAACTGGAAGTTCCTTACAATATCTTTCTCAGGAAATATTTTGGGAAATGGGGTAAGAGATGGCAAGT
1921 GTGAGACGGGCTGTGTCAGAGGTTGCTACGTCATGGATACAGTGCAGTTCCAAGTGCCATAAGTGTATGTACATATAGTT
2001 AATAATGACACTGTTCATCACCATTCTAAAATACTGTTCTTCCAACCCTATCTTCAATGACCAGTCCAGAAGGGGTTAAG
2081 CTGGATTCATTTGCTCTGGCATGTGCATTCCCAGCAGGGTGAAGAAAGGTTTAAATTAAAGAATTTATTTTCTCTCTCCC
2161 CCTTCCTCTTTCTCCCAGTCTTTGCATAGGAGAATGTTAGACATTCAGAAATTACTGTTTCTGTTTTAAATTGAGTATTG
2241 ATTTTTTTATATTGACTTTGTATTGAGTTCTTTTTGAAAGAATAACAAAATAAAATGCAGGATCTTTGTAAAGCCTTTGC
2321 ACTTTCAACCTCTTTATAGCTTGAGTTACTTTTGCAGTGGGAACAATGTAAATGACATTTAAAAGATTTAAGGTTTCAGA
2401 AAGCTGCATCCCACAATTGAACACAATGCATTTTTATTTCAATTCTTGGAACTGGTAGGCTATTCTTTTTAAAAGGGGGT
2481 AAACTTCGCCCTAAGGCTGGTAGAATGTATGTTCACATTATAGTAGACAGGATTTCATTTGCCTTATATGTTTATAGATT
2561 TTTTATAATTTTCATCCTACGTTATTAAAATTAGAGCATTGAGTGTTAAAGAACTTAATGAGGAGTCTATATCTGAGATT
2641 GCTCTCTTCCCTGGTGATGTTTTAACTGGTAGATAATTTGTTCTTAAATATGTACTTTTGAAGATAGGACAGTTTTTATA
2721 GTCCATGAACTGAATGTTAAAAAGTTCTGTATGCATTCTCAGAGAGGATTTTAAAGCTATATAGTTCATCCATCCTTTGC
2801 ATTATCAAAATGTTAAGTCAAATCTGTAATACTTTGGCTAAAATTCATAAAGTAAGCCCTAGAGAAAATACTTGACCACC
2881 AAATTTTTGCCCAACTATCATCACCTCCCTTCCCCCGCCTCTGTTCTTGCCTTTTGACATCTACATGGAAGACAAGTTCT
2961 TTACAGCAAATGGTAAGAGGCAGGTGACCTGGTGTGTTTGCTGTGTTGTAGTTCATTGCCTGGGGCTTGGGACTCCTTTT
3041 TTAATGGAGAGACTAGCTGTGCAGGTGTGTGTTGGATAGGGATAAAGTGCTCACCCCTGCCCTCTCTACAGTAGTTGGTG
3121 GTAGATTTCTCTCTCATTTTGCCTCATAATCACTTTCGAGTGCATGTATTTACCTAAGGGCTGTAGCTCTGTGGGATGCT
3201 ACCAGCATATTGGACTGACAGAAATTGATTACCTTGCCACTCCAACCTACGTACTGAGTGAGTGCTCCAGCCACTCAGTG
3281 AAACCAACAAAAGTGAGTCCTTGGTTTACCTTCCAATCTGGGTCCTGCTGTGTAAGTATCCCTAAGTGGGGATGCATATT
3361 TGTTTGTGCGTTTTTATTTCCATATATGTGAGCATTTCTCTGAGTGTATTACCAGACGGATAGCACATTTATATGTCAGA
3441 CATCTTAACATCTGTGTTATCTGTAGCAGGTGTGTAGCTCAGCAGATACGTGTCATTGTGTATATAGCTGAGTGTGTGAG
3521 GGTGTCTGTGTTTCTGCAGTCCCCTGTGTTTGAGAGATGACTTAATAACCCTGTGTTTTGAGAGGTCGCTCTAAACCAGT
3601 GACTTTTCCCTCCCCTGCTTTATTCCTTTCCCTCACTGACACTGGCTTCTCCCGCTAGAGTAAATGGCTTTAGCACAGCA
3681 CTGTCTTCTGGGGAGCCTGCTGTCCTGCAGGCAAGTCCATTAAACTCTTTCTTGCTTTAGGACTCTGAAAACAGCAAGAA
3761 ACAAACAAACAAAGGTCAAGCTCTAAGAAAATTACTGCTCAAACTTCACTACCCTGGAAGCCTTACTAGATATTTCTTAA
3841 GGTAACTTAAAAATTGGGCTTTATTTTTAAAAAGTGATAGGTTACTTACAGTAGCACAGAAATGTTAGCATATTTATTTA
3921 AATAGTCCTGCAGCAGAGACCCTGCGATTGTAAAGTGATTTAAGTATTTCTGGGTAGTGTTTGTGATTTACGGATTTGTT
4001 ACTGAAAAACAAAAAAATCACTACTGTGAATTTACTACTATGTAACCTTGTGGTCGTATTTCATTATAAATAAAATAAGA
4081 ATTGCTCTTCTGCCCACCGTTCTTGATTGGTATTCAGTGCAGTAGCGAAATGAGATAGTTTAGACACTGTTGAAATAACT
4161 GCATTGAGCTTTAACCAAGTGTATGCTCAGAAAATTCAGTTTTGGATCACATTTTGACAAAACATGTTTTGGTCAAAGAA
4241 AGGAAAGGCTACTAACACATTTATCAGGTAATGTATGTCACAGTCCGTGTTCCACCCAGCCTTGTTATCCCCACATTCTT
4321 TCAAGATAGGAGTCATCTTGGTTTTTCGGGTGAAAAACGGAAGGTCAGAGAGGAAGGGGCTTGTCCAAGGTCTCATGTCT
4401 GGTTAACAGAATTTCAAACTAGATGTTTGATTCTAACCCCTCAGTCCACTGTACCTTGAAGTATGGTCTAAATGATTCGG
4481 CACTTCTGGATGTTGAGGAAGGACCTAGAGACACATCCTTGAACTAGAACCTGGGGTGAGAGTTCATTGGGAGGCAGGAT
4561 CTCTTCTTTCACTTTGGATTTACACCTTGTCCCTTGGAAAGCTTCTCCACTATGCTAGCAAATATCTTAGGATATTTGAT
4641 GGAAAGAACTTGAGAATCCCTTCTGGAAAACCCAGCCTTTCAGTGTTAACACCTGCTGCAAGACAGGGATGCTGTTGTTC
4721 TGGCAGCCCCCCTTTGCTTTTGCCTGGCCCCACCTTCTGCTCCCACTCTGCTGGCTTGGGCAAGATGCGTGCCTTGGGCC
4801 TTGGGTGCAGGGAGGCAGGCAGGGGCTTGACCTGGCCTCTCTCTGGTGCCATGGCAACATTATGCCCCAAACTTCTTCCC
4881 TGGTTGGAGTGAGAGGGGCTGTCCACAGCCCCATCCTGTGGGGATCTCAAGCCGGAGTCCCTGGCCTGGCCTCCTTGACG
4961 TAGGTGTTCTCAGCAAGCAGTTTGCATCCCACCGTCTTTCTCACACTTGCCCCCAAGACTTTTGACAGAGCAGACGTAAA
5041 ACAGGACTCAGAAAACCATTTTTCTCTGTTCCCATATGTAGTAAGTTTTGATTCAGTTGTGCATAAACCATAGTTTTCTG
5121 CCCTGCTGTTTGCTTTCAATGGAAGACAGTAAAGGGAAGATGGTGCTCACATCTCTCCATGTGACATCTCATTAGGAATT
5201 AAGATGCGATGGATTAGAAATGTAAAACTTCAGAATAAAATTAAATTTCAGGGCTCTATAAGTCCCGTTTTCCCAGGTCC
5281 TGTTCCGTTTCTACGTAGATAACCCAATTTGTTTTGTCTATGAAATAAGCCTCTTTAGTGGGTTGTTTTAGTCTCTCCAA
5361 CAAAAGAGCAGATTCCTAAAGCCAGGTGCAGCACTGTGAAAAGTTTCTTTCAATATGGCACCAAGACTCTACCATTTATG
5441 TCTCTCTCAGCTTACAAACATCAGCGTTTTGTCCTTGTCATAGTGGAAGAAAGACACTTACTTTAAGCTTTGGGGACAAA
5521 GGTGACAAACCCCAGGCTTTTATCTTAAAAGTGTCTTTGGCACTTCTTTTGGCACTGAAATGGTATTTGGGAAGCATTAT
5601 TTGAATGTACAGTTGTTTGGTTTTGTATGTGCTTATCTTTATCTGAGCTTTCACTTGTAGACATGGCCTTTTGTTGTGAA
5681 GTTGCTCATCATTTAGGAGTGTTTAATTCTAAAAAGCCTTCAGCCTAAGAAAGCTTCATCTGTGGGGACCAGAGACTTGT
5761 TGCTCAGGGAGTTAGTGATGGGACTTGGGCATCTGATCTGCAGGTGACAAGTTTAGTTCAACTGAAGTTGTAGGGAATTT
5841 AGACAGTTGCACATCATTGCCGTTCTAGGGGCCTTGTAGAAAGATGAAACAGTTGTTTTTCATTTACCAGCACCTCTCAG
5921 TTATAGAGGTAATGGAACATTCGCTTACTTTTCATCATCATTCTTTAAAAAGGGAACATACAAAAATCTAAACTATGGCA
6001 ATAATTTATTTTTATAATAGTTTACGGTAGGCTTTAATTAAATGGCAAACTCCTCTGGGACCCCTAAGTTATGGCGTGAT
6081 TAGCCAAATTTGATTTCCAACAGTCATTTATGGCCATAACTATTGCATAGAGTGCAGGATGCCAGCAAAGATGAGGGTGG
6161 GGGCAGATACTGGCTCAGTGATTTAACTCACATTATAGATGACCCCTTCCTCAACAGAAATGCTACTGAGAGAACCAGAG
6241 AGGCCTGGGCCAGGCAGGTCTTATTTGAGAGGAGATTATTTGATAATTGCTTTGGTTAGAAGGACTTTACATTTCCTGAT
6321 TTCAAGTCCAGCACCAATTTAGAAAGTTCAGAGATGAAACCACCTGTCTTTACCTGACAGAGTCATAACGGTTTGTGTAA
6401 AAATGTGGTCAGGGACCTTTTTTGTTCTTTCTGATTAGTTAATACTGTACATTGTAACCAGGAGGGGCAGTTTTGCCAAC
6481 CAGCCTCTGCTCATGGTCACCATATGTGTATGACAAGGCCTGAGTGAGTTCCTGCATAAACTGGGTAGTGGGCTCTTTTG
6561 ACACATTTGCAAGCATGTAAATGAATGAATGACACTACCAGCAACCATCTGTACAGGTCCATTTACTTACATTCATAAGG
6641 TTTATGCTATGAAACTTCTTCTCATTGTGATGTCAGTAACAGAGTTAGTGTCTCTGATGGAATAGTGTACCTGTCACCCA
6721 AGTTATTTTGTTCCTTTTTGGGTCCTCCAGTATAATCCCCCCCTCATCCCAATTAACTGTAAAATGTTTTACACATCACA
6801 TTTTTTATACTGTAAACTTGGAAAATAAACTGAAATATCAAATTG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guaccAGGGUGG--AGGGACGGAc 5'
               | | ||:  |:||||||| 
Target 5' cgcctTACAACTAATTCCTGCCTt 3'
 300 - 323 151.00 -15.80
2 
miRNA  3' guaccaGGGUGGAG----GGACGGAc 5'
                |||:||||    |:||||| 
Target 5' ccttccCCCGCCTCTGTTCTTGCCTt 3'
 2908 - 2933 146.00 -22.60
3 
miRNA  3' guacCAGG--GUGGAGGGACGGAc 5'
              ||:|   |  | ||||||| 
Target 5' ggcaGTTCAGGAGATACCTGCCTt 3'
 480 - 503 144.00 -14.34
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
875537 26 ClinVar
292014 48 ClinVar
292015 84 ClinVar
292016 89 ClinVar
292017 218 ClinVar
873669 230 ClinVar
873670 235 ClinVar
292018 301 ClinVar
292019 302 ClinVar
292020 314 ClinVar
292021 341 ClinVar
292022 384 ClinVar
292023 417 ClinVar
292024 484 ClinVar
292025 506 ClinVar
292026 635 ClinVar
292027 695 ClinVar
292028 708 ClinVar
292029 759 ClinVar
873745 802 ClinVar
873746 923 ClinVar
292030 930 ClinVar
292031 932 ClinVar
292032 1043 ClinVar
292033 1044 ClinVar
292034 1183 ClinVar
292035 1278 ClinVar
874702 1403 ClinVar
292036 1457 ClinVar
292037 1484 ClinVar
875643 1493 ClinVar
875644 1493 ClinVar
292038 1517 ClinVar
292039 1546 ClinVar
292040 1628 ClinVar
876641 1639 ClinVar
876642 1653 ClinVar
873797 1749 ClinVar
292041 1750 ClinVar
292042 1750 ClinVar
292043 1773 ClinVar
292044 1971 ClinVar
874758 2010 ClinVar
292045 2044 ClinVar
292046 2100 ClinVar
292047 2108 ClinVar
292048 2117 ClinVar
292049 2188 ClinVar
292050 2330 ClinVar
292051 2337 ClinVar
876685 2345 ClinVar
292052 2352 ClinVar
292053 2461 ClinVar
292054 2490 ClinVar
873852 2505 ClinVar
292055 2542 ClinVar
292056 2543 ClinVar
292057 2582 ClinVar
874802 2593 ClinVar
292058 2696 ClinVar
874803 2709 ClinVar
292059 2866 ClinVar
875742 2918 ClinVar
875743 2962 ClinVar
292060 2993 ClinVar
292061 3024 ClinVar
876734 3050 ClinVar
292062 3124 ClinVar
876735 3151 ClinVar
873905 3268 ClinVar
873906 3274 ClinVar
292063 3290 ClinVar
873907 3291 ClinVar
292064 3337 ClinVar
292065 3407 ClinVar
874853 3410 ClinVar
292066 3418 ClinVar
292067 3497 ClinVar
292068 3545 ClinVar
875786 3560 ClinVar
292069 3599 ClinVar
875787 3609 ClinVar
875788 3654 ClinVar
292070 3667 ClinVar
876783 3672 ClinVar
876784 3709 ClinVar
292071 3721 ClinVar
873966 3743 ClinVar
292072 3759 ClinVar
873967 3845 ClinVar
873968 4042 ClinVar
292073 4088 ClinVar
873969 4210 ClinVar
874904 4255 ClinVar
874905 4273 ClinVar
874906 4348 ClinVar
292074 4464 ClinVar
292075 4479 ClinVar
292076 4505 ClinVar
292077 4677 ClinVar
292078 4732 ClinVar
875842 4789 ClinVar
876832 4801 ClinVar
292079 4841 ClinVar
292080 4847 ClinVar
876833 5009 ClinVar
292081 5023 ClinVar
874026 5037 ClinVar
292082 5067 ClinVar
292083 5133 ClinVar
292084 5267 ClinVar
292085 5268 ClinVar
292086 5268 ClinVar
292087 5352 ClinVar
292088 5369 ClinVar
292089 5414 ClinVar
292090 5441 ClinVar
292091 5445 ClinVar
292092 5467 ClinVar
292093 5634 ClinVar
292094 5638 ClinVar
292095 5752 ClinVar
292096 5809 ClinVar
292097 5842 ClinVar
292098 5863 ClinVar
292099 5930 ClinVar
292100 5994 ClinVar
292101 5996 ClinVar
292102 6027 ClinVar
292103 6085 ClinVar
292104 6129 ClinVar
292105 6200 ClinVar
292106 6213 ClinVar
292107 6322 ClinVar
292108 6361 ClinVar
292109 6475 ClinVar
292110 6603 ClinVar
292111 6641 ClinVar
876931 6682 ClinVar
876932 6688 ClinVar
292112 6722 ClinVar
292113 6757 ClinVar
874140 6795 ClinVar
874141 6838 ClinVar
COSN31605482 14 COSMIC
COSN27004526 26 COSMIC
COSN20068203 35 COSMIC
COSN27004527 47 COSMIC
COSN31489009 48 COSMIC
COSN28870112 52 COSMIC
COSN32074027 64 COSMIC
COSN30518320 69 COSMIC
COSN31606249 92 COSMIC
COSN30130060 117 COSMIC
COSN30159556 155 COSMIC
COSN31488547 199 COSMIC
COSN26671011 265 COSMIC
COSN28834713 327 COSMIC
COSN29467648 349 COSMIC
COSN26375198 372 COSMIC
COSN31590088 416 COSMIC
COSN26574108 421 COSMIC
COSN31960289 478 COSMIC
COSN30170805 482 COSMIC
COSN20326774 569 COSMIC
COSN31533590 608 COSMIC
COSN28834943 715 COSMIC
COSN31591412 758 COSMIC
COSN5999729 865 COSMIC
COSN7173302 868 COSMIC
COSN31539117 881 COSMIC
COSN27606048 960 COSMIC
COSN31520784 983 COSMIC
COSN5197243 1037 COSMIC
COSN31540484 1050 COSMIC
COSN31487266 1123 COSMIC
COSN20095222 1184 COSMIC
COSN31549211 1197 COSMIC
COSN28720024 1278 COSMIC
COSN28834650 1292 COSMIC
COSN31778127 1334 COSMIC
COSN31480956 1341 COSMIC
COSN24975738 1361 COSMIC
COSN32063423 1532 COSMIC
COSN31489234 1912 COSMIC
COSN15660519 1924 COSMIC
COSN8888244 1929 COSMIC
COSN5999730 2116 COSMIC
COSN26197587 2163 COSMIC
COSN25300711 2284 COSMIC
COSN29810404 2375 COSMIC
COSN8888245 2485 COSMIC
COSN23052341 2585 COSMIC
COSN17038116 2818 COSMIC
COSN8318397 3352 COSMIC
COSN32065584 3760 COSMIC
COSN31568828 3802 COSMIC
COSN31595358 3881 COSMIC
COSN31556827 3933 COSMIC
COSN31589221 3946 COSMIC
COSN31518607 3984 COSMIC
COSN31538825 4020 COSMIC
COSN30173708 4057 COSMIC
COSN31535461 4111 COSMIC
COSN31543731 4170 COSMIC
COSN1402568 4314 COSMIC
COSN16399035 4402 COSMIC
COSN22713460 4807 COSMIC
COSN5864364 4854 COSMIC
COSN23768280 4880 COSMIC
COSN19298514 5125 COSMIC
COSN31960290 5208 COSMIC
COSN32057568 5369 COSMIC
COSN5797581 5514 COSMIC
COSN31960291 5863 COSMIC
COSN32057569 6213 COSMIC
COSN18976671 6222 COSMIC
COSN26895259 6390 COSMIC
COSN32058269 6632 COSMIC
COSN20095223 6764 COSMIC
rs3204955 1278 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs754699346 6 dbSNP
rs377233845 9 dbSNP
rs202050152 24 dbSNP
rs151052987 25 dbSNP
rs747990770 25 dbSNP
rs879057814 25 dbSNP
rs577473121 26 dbSNP
rs1390981808 27 dbSNP
rs1294254464 32 dbSNP
rs893687354 33 dbSNP
rs1324608217 35 dbSNP
rs1006261207 37 dbSNP
rs1315875005 39 dbSNP
rs1346755749 40 dbSNP
rs773274144 43 dbSNP
rs1314285104 45 dbSNP
rs376792729 46 dbSNP
rs190792695 48 dbSNP
rs1284876842 50 dbSNP
rs779748390 51 dbSNP
rs1222287600 52 dbSNP
rs536352724 59 dbSNP
rs1157960941 63 dbSNP
rs1416893946 66 dbSNP
rs1409581693 67 dbSNP
rs868226610 71 dbSNP
rs962446900 72 dbSNP
rs1035517369 74 dbSNP
rs956039545 80 dbSNP
rs1220826838 83 dbSNP
rs3811013 84 dbSNP
rs1266362748 88 dbSNP
rs746915495 89 dbSNP
rs886045120 89 dbSNP
rs1315320043 92 dbSNP
rs576046495 95 dbSNP
rs1269573774 99 dbSNP
rs1344902613 106 dbSNP
rs1441299306 115 dbSNP
rs771402153 116 dbSNP
rs147518221 117 dbSNP
rs1234979818 122 dbSNP
rs910551058 124 dbSNP
rs943455364 136 dbSNP
rs1211853503 143 dbSNP
rs559013927 145 dbSNP
rs916231637 146 dbSNP
rs902023791 155 dbSNP
rs969122647 160 dbSNP
rs1023798060 168 dbSNP
rs1468843976 176 dbSNP
rs1447707393 177 dbSNP
rs774724883 179 dbSNP
rs982264138 192 dbSNP
rs770899456 193 dbSNP
rs929439850 201 dbSNP
rs1481677321 205 dbSNP
rs41299565 218 dbSNP
rs183938394 219 dbSNP
rs1365322256 220 dbSNP
rs1485049946 221 dbSNP
rs1418060428 226 dbSNP
rs1460622785 230 dbSNP
rs188834002 234 dbSNP
rs1322961292 252 dbSNP
rs1261287587 276 dbSNP
rs140372918 287 dbSNP
rs1312667235 295 dbSNP
rs41310108 301 dbSNP
rs193075321 302 dbSNP
rs1289089051 304 dbSNP
rs1035380436 306 dbSNP
rs1050357267 308 dbSNP
rs3811012 314 dbSNP
rs1177927617 315 dbSNP
rs1293714996 321 dbSNP
rs1333945682 326 dbSNP
rs989019015 327 dbSNP
rs1021452680 331 dbSNP
rs1264249986 332 dbSNP
rs1189476331 334 dbSNP
rs1461018404 336 dbSNP
rs775792970 338 dbSNP
rs886045121 341 dbSNP
rs529973396 345 dbSNP
rs1345708943 346 dbSNP
rs1250706928 374 dbSNP
rs897887010 383 dbSNP
rs75277108 384 dbSNP
rs565074026 386 dbSNP
rs1244855097 393 dbSNP
rs1027767556 395 dbSNP
rs910583672 412 dbSNP
rs887971659 416 dbSNP
rs3811011 417 dbSNP
rs753367522 421 dbSNP
rs183137974 422 dbSNP
rs1486951727 426 dbSNP
rs1169584162 432 dbSNP
rs1444314421 437 dbSNP
rs1383606992 442 dbSNP
rs929498480 443 dbSNP
rs565563973 448 dbSNP
rs1249860972 458 dbSNP
rs1257215003 460 dbSNP
rs536314021 467 dbSNP
rs548311895 469 dbSNP
rs187145225 477 dbSNP
rs1221443949 478 dbSNP
rs1162331007 481 dbSNP
rs886045122 484 dbSNP
rs1316721461 487 dbSNP
rs956453057 489 dbSNP
rs1245012304 491 dbSNP
rs987916339 497 dbSNP
rs1334680881 505 dbSNP
rs6700610 506 dbSNP
rs946570867 507 dbSNP
rs986038372 519 dbSNP
rs1390204591 522 dbSNP
rs910430708 538 dbSNP
rs1309085178 542 dbSNP
rs1424440874 543 dbSNP
rs1382646316 544 dbSNP
rs944639272 545 dbSNP
rs1044598021 551 dbSNP
rs905556188 556 dbSNP
rs1002455966 557 dbSNP
rs1313462351 562 dbSNP
rs1420868220 564 dbSNP
rs1035411134 567 dbSNP
rs1040347510 568 dbSNP
rs1412780450 569 dbSNP
rs897850830 576 dbSNP
rs929375423 586 dbSNP
rs1336598075 589 dbSNP
rs1009988534 593 dbSNP
rs1350510832 595 dbSNP
rs537095279 597 dbSNP
rs1238352843 599 dbSNP
rs770078745 608 dbSNP
rs559191001 610 dbSNP
rs887940786 614 dbSNP
rs765225137 617 dbSNP
rs1350193285 619 dbSNP
rs1325919606 625 dbSNP
rs1406213340 628 dbSNP
rs1212193794 634 dbSNP
rs546423374 635 dbSNP
rs1384509372 644 dbSNP
rs1156985536 645 dbSNP
rs1021898424 648 dbSNP
rs907426018 650 dbSNP
rs1479401326 661 dbSNP
rs1006823440 663 dbSNP
rs1003548188 665 dbSNP
rs1018179336 670 dbSNP
rs1034677525 679 dbSNP
rs750189795 683 dbSNP
rs1329282946 684 dbSNP
rs1419334781 687 dbSNP
rs987885289 690 dbSNP
rs964708406 691 dbSNP
rs41312690 695 dbSNP
rs543435783 698 dbSNP
rs562969850 708 dbSNP
rs950888132 712 dbSNP
rs1326146541 713 dbSNP
rs778070238 715 dbSNP
rs983543611 715 dbSNP
rs1316536224 718 dbSNP
rs191916791 723 dbSNP
rs985938363 729 dbSNP
rs1436108187 731 dbSNP
rs1174184929 732 dbSNP
rs1437484187 733 dbSNP
rs575100770 734 dbSNP
rs1374781032 735 dbSNP
rs910390711 736 dbSNP
rs1468225581 739 dbSNP
rs748466324 742 dbSNP
rs1173035297 746 dbSNP
rs542722999 748 dbSNP
rs561013957 752 dbSNP
rs976429175 754 dbSNP
rs919264225 755 dbSNP
rs929344338 758 dbSNP
rs546932643 759 dbSNP
rs1305188608 764 dbSNP
rs909259296 773 dbSNP
rs1201227543 784 dbSNP
rs1373269564 786 dbSNP
rs938931159 791 dbSNP
rs1057242305 797 dbSNP
rs891440716 800 dbSNP
rs768206672 802 dbSNP
rs1366191519 803 dbSNP
rs904374520 807 dbSNP
rs1450565220 817 dbSNP
rs1360903290 820 dbSNP
rs1334787950 822 dbSNP
rs1409255404 846 dbSNP
rs1417190885 847 dbSNP
rs1170217377 849 dbSNP
rs1303227310 853 dbSNP
rs1449768636 860 dbSNP
rs749313962 862 dbSNP
rs1346359816 864 dbSNP
rs1181299308 865 dbSNP
rs1207016569 871 dbSNP
rs1252220660 875 dbSNP
rs1006687842 877 dbSNP
rs1044540453 880 dbSNP
rs1211497227 882 dbSNP
rs543010660 885 dbSNP
rs564903074 888 dbSNP
rs1194864193 895 dbSNP
rs1437722199 900 dbSNP
rs1271406859 901 dbSNP
rs1003107665 903 dbSNP
rs1343240683 904 dbSNP
rs1314642291 909 dbSNP
rs1455146026 914 dbSNP
rs1381463513 918 dbSNP
rs532280468 922 dbSNP
rs142123586 923 dbSNP
rs998099238 924 dbSNP
rs892128374 926 dbSNP
rs886045123 930 dbSNP
rs1431395747 932 dbSNP
rs886045124 932 dbSNP
rs1364689127 943 dbSNP
rs1030776670 954 dbSNP
rs950718585 959 dbSNP
rs922836234 960 dbSNP
rs1413936121 979 dbSNP
rs1176116696 985 dbSNP
rs771463201 991 dbSNP
rs774778047 992 dbSNP
rs980274876 1000 dbSNP
rs1291441476 1007 dbSNP
rs1219710328 1011 dbSNP
rs1140940 1025 dbSNP
rs927466297 1026 dbSNP
rs886045125 1043 dbSNP
rs150705915 1044 dbSNP
rs1223281152 1050 dbSNP
rs1057367121 1051 dbSNP
rs184219889 1054 dbSNP
rs912901021 1055 dbSNP
rs571773716 1058 dbSNP
rs1459180071 1070 dbSNP
rs1350093246 1081 dbSNP
rs532624321 1091 dbSNP
rs1017419946 1097 dbSNP
rs1398453197 1098 dbSNP
rs189281695 1109 dbSNP
rs1162035346 1115 dbSNP
rs966313112 1116 dbSNP
rs976019288 1118 dbSNP
rs548271849 1120 dbSNP
rs1489623277 1123 dbSNP
rs1325340274 1124 dbSNP
rs570088872 1125 dbSNP
rs1215250331 1131 dbSNP
rs772549096 1133 dbSNP
rs1228972791 1134 dbSNP
rs904237820 1136 dbSNP
rs1368922717 1144 dbSNP
rs1281204821 1158 dbSNP
rs1388306918 1182 dbSNP
rs3841008 1183 dbSNP
rs745513363 1183 dbSNP
rs200424846 1184 dbSNP
rs984730186 1188 dbSNP
rs1287960008 1194 dbSNP
rs775715683 1195 dbSNP
rs1390268569 1197 dbSNP
rs866898864 1198 dbSNP
rs1458291567 1199 dbSNP
rs948791933 1200 dbSNP
rs760417261 1201 dbSNP
rs1435282724 1206 dbSNP
rs1044896632 1208 dbSNP
rs1426251385 1215 dbSNP
rs1186196540 1216 dbSNP
rs537559714 1222 dbSNP
rs1307276823 1224 dbSNP
rs900994585 1225 dbSNP
rs1250052685 1232 dbSNP
rs768401140 1233 dbSNP
rs1460880708 1237 dbSNP
rs192418098 1244 dbSNP
rs998524174 1247 dbSNP
rs1025537311 1253 dbSNP
rs1255695394 1254 dbSNP
rs1312583828 1270 dbSNP
rs886443301 1275 dbSNP
rs3204955 1278 dbSNP
rs1366916998 1279 dbSNP
rs1251803438 1289 dbSNP
rs1487249207 1299 dbSNP
rs1403183487 1300 dbSNP
rs1053298738 1305 dbSNP
rs535300651 1311 dbSNP
rs963471592 1314 dbSNP
rs1170182510 1319 dbSNP
rs536991615 1323 dbSNP
rs1392266229 1327 dbSNP
rs1189376933 1332 dbSNP
rs1444114584 1334 dbSNP
rs1034505963 1349 dbSNP
rs1202158055 1351 dbSNP
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rs892013450 1356 dbSNP
rs1011848145 1357 dbSNP
rs1049887638 1363 dbSNP
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rs1343968922 1376 dbSNP
rs553736072 1383 dbSNP
rs1244739605 1389 dbSNP
rs554953611 1394 dbSNP
rs1007306816 1396 dbSNP
rs185557879 1397 dbSNP
rs557599497 1399 dbSNP
rs1017804624 1409 dbSNP
rs965828924 1412 dbSNP
rs997717371 1413 dbSNP
rs1424239361 1415 dbSNP
rs576009207 1418 dbSNP
rs1366839333 1426 dbSNP
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rs1039443726 1432 dbSNP
rs1289892871 1438 dbSNP
rs1026162399 1449 dbSNP
rs1380834346 1453 dbSNP
rs886045126 1457 dbSNP
rs933801440 1467 dbSNP
rs1221331642 1476 dbSNP
rs886045127 1484 dbSNP
rs558234836 1492 dbSNP
rs752428680 1493 dbSNP
rs1272220258 1500 dbSNP
rs1319402912 1504 dbSNP
rs139030532 1516 dbSNP
rs886045128 1517 dbSNP
rs766234280 1518 dbSNP
rs980203790 1522 dbSNP
rs1217320553 1529 dbSNP
rs1288303207 1531 dbSNP
rs751286344 1533 dbSNP
rs1242574896 1542 dbSNP
rs938782686 1544 dbSNP
rs117337677 1546 dbSNP
rs899160845 1549 dbSNP
rs1363263012 1552 dbSNP
rs1458479061 1552 dbSNP
rs1156887549 1554 dbSNP
rs1473513385 1557 dbSNP
rs1252350698 1561 dbSNP
rs913430145 1583 dbSNP
rs1191467719 1592 dbSNP
rs1449598122 1595 dbSNP
rs1269022517 1597 dbSNP
rs1210018946 1601 dbSNP
rs1001583943 1604 dbSNP
rs1265670384 1608 dbSNP
rs947599857 1614 dbSNP
rs1043367186 1624 dbSNP
rs376483138 1626 dbSNP
rs1034371650 1627 dbSNP
rs149888685 1628 dbSNP
rs756347879 1639 dbSNP
rs529826781 1648 dbSNP
rs146512242 1653 dbSNP
rs1325813046 1665 dbSNP
rs1387519910 1670 dbSNP
rs563498729 1671 dbSNP
rs1388062822 1674 dbSNP
rs530880333 1675 dbSNP
rs1411901321 1677 dbSNP
rs1020863116 1683 dbSNP
rs758084839 1684 dbSNP
rs1402460197 1685 dbSNP
rs374184679 1689 dbSNP
rs1171863191 1714 dbSNP
rs979405642 1723 dbSNP
rs552654551 1725 dbSNP
rs1379100884 1728 dbSNP
rs1026093202 1730 dbSNP
rs1345070586 1731 dbSNP
rs942320807 1734 dbSNP
rs527469515 1735 dbSNP
rs886298335 1740 dbSNP
rs199831777 1742 dbSNP
rs975162955 1744 dbSNP
rs143344734 1749 dbSNP
rs3811010 1750 dbSNP
rs3811009 1752 dbSNP
rs1276952372 1757 dbSNP
rs1046933216 1765 dbSNP
rs757271569 1766 dbSNP
rs1364714479 1767 dbSNP
rs1295602518 1768 dbSNP
rs980471573 1771 dbSNP
rs114033235 1773 dbSNP
rs770940025 1774 dbSNP
rs941318935 1774 dbSNP
rs1284382920 1776 dbSNP
rs1315862982 1777 dbSNP
rs1214342934 1778 dbSNP
rs1282469201 1779 dbSNP
rs1448564046 1782 dbSNP
rs1038219310 1783 dbSNP
rs1190035388 1786 dbSNP
rs1485836937 1801 dbSNP
rs1186971616 1806 dbSNP
rs960387122 1807 dbSNP
rs1210095711 1814 dbSNP
rs988934887 1814 dbSNP
rs1001449598 1819 dbSNP
rs1281237181 1825 dbSNP
rs558495908 1840 dbSNP
rs913399331 1841 dbSNP
rs1272791935 1845 dbSNP
rs895933542 1846 dbSNP
rs947569136 1847 dbSNP
rs536160074 1854 dbSNP
rs1283640546 1855 dbSNP
rs1020474378 1857 dbSNP
rs1342184158 1867 dbSNP
rs757181512 1871 dbSNP
rs1407327167 1879 dbSNP
rs190492027 1883 dbSNP
rs1428879783 1886 dbSNP
rs1437974978 1891 dbSNP
rs942981966 1894 dbSNP
rs1170118389 1898 dbSNP
rs1368427693 1898 dbSNP
rs569451320 1899 dbSNP
rs901540075 1919 dbSNP
rs1179593846 1926 dbSNP
rs963716372 1928 dbSNP
rs374222902 1929 dbSNP
rs576542934 1950 dbSNP
rs576424816 1951 dbSNP
rs955173151 1958 dbSNP
rs1005976776 1960 dbSNP
rs1343131989 1961 dbSNP
rs1289320158 1962 dbSNP
rs746455152 1971 dbSNP
rs540663881 1977 dbSNP
rs982924220 1980 dbSNP
rs1037500304 1984 dbSNP
rs1409086259 1992 dbSNP
rs1348454128 1994 dbSNP
rs772428353 1997 dbSNP
rs1410126578 2000 dbSNP
rs1348955120 2003 dbSNP
rs1162178905 2005 dbSNP
rs1406632956 2007 dbSNP
rs1001488384 2009 dbSNP
rs181543393 2010 dbSNP
rs1166344815 2012 dbSNP
rs1472530706 2013 dbSNP
rs1250145923 2016 dbSNP
rs747329406 2018 dbSNP
rs960106278 2024 dbSNP
rs1010316665 2029 dbSNP
rs74117021 2044 dbSNP
rs1279829274 2048 dbSNP
rs926509670 2049 dbSNP
rs769937758 2051 dbSNP
rs937924106 2058 dbSNP
rs1290656350 2076 dbSNP
rs1227753152 2078 dbSNP
rs968790293 2097 dbSNP
rs886045129 2100 dbSNP
rs911404702 2101 dbSNP
rs1348528809 2104 dbSNP
rs886045130 2108 dbSNP
rs886045131 2117 dbSNP
rs1276200702 2118 dbSNP
rs1438134872 2120 dbSNP
rs184469057 2122 dbSNP
rs1319296257 2126 dbSNP
rs964635035 2127 dbSNP
rs977057311 2131 dbSNP
rs1014369999 2136 dbSNP
rs1161922430 2144 dbSNP
rs1420088576 2147 dbSNP
rs922929325 2155 dbSNP
rs563303749 2156 dbSNP
rs1232592666 2157 dbSNP
rs376302608 2160 dbSNP
rs530767210 2163 dbSNP
rs1253782707 2166 dbSNP
rs1208174160 2177 dbSNP
rs1042165604 2182 dbSNP
rs375230119 2187 dbSNP
rs146730302 2188 dbSNP
rs1047395708 2190 dbSNP
rs1000330959 2201 dbSNP
rs1298876241 2202 dbSNP
rs1396162184 2209 dbSNP
rs1220659320 2218 dbSNP
rs907592300 2224 dbSNP
rs1296347255 2240 dbSNP
rs559112941 2242 dbSNP
rs1390155589 2243 dbSNP
rs1323169317 2252 dbSNP
rs1171380643 2255 dbSNP
rs1454742617 2261 dbSNP
rs1358990137 2270 dbSNP
rs1174394271 2287 dbSNP
rs1435192331 2287 dbSNP
rs1395923427 2289 dbSNP
rs1188121398 2314 dbSNP
rs1422080162 2314 dbSNP
rs866622913 2315 dbSNP
rs188964296 2330 dbSNP
rs148944333 2337 dbSNP
rs761542338 2341 dbSNP
rs905719521 2344 dbSNP
rs531884184 2345 dbSNP
rs12121158 2352 dbSNP
rs1273510210 2357 dbSNP
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rs1327365663 2364 dbSNP
rs574291338 2367 dbSNP
rs1366805467 2371 dbSNP
rs1010200653 2390 dbSNP
rs1383337458 2401 dbSNP
rs1020313258 2404 dbSNP
rs1371140322 2404 dbSNP
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rs1301546698 2409 dbSNP
rs1232407743 2415 dbSNP
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rs1273069986 2437 dbSNP
rs1168246738 2439 dbSNP
rs1428026571 2443 dbSNP
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rs950053762 2558 dbSNP
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rs1054650695 2610 dbSNP
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rs1266661021 2640 dbSNP
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rs1337861432 2649 dbSNP
rs1329819413 2651 dbSNP
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rs904550841 2659 dbSNP
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rs1277366076 2666 dbSNP
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rs899925570 2684 dbSNP
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rs1255741013 3210 dbSNP
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rs912714472 3280 dbSNP
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rs569511862 3294 dbSNP
rs1253683462 3300 dbSNP
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rs1277775112 3331 dbSNP
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rs925823022 3335 dbSNP
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rs61732170 3337 dbSNP
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rs140931431 3410 dbSNP
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rs757056873 3672 dbSNP
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rs1327903418 3720 dbSNP
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rs115376031 3743 dbSNP
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rs1254299305 3771 dbSNP
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rs528983735 3845 dbSNP
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rs568777465 3855 dbSNP
rs1383724303 3858 dbSNP
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rs1385369719 3874 dbSNP
rs1032827360 3877 dbSNP
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rs1378930780 3895 dbSNP
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rs957472626 3911 dbSNP
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rs1191604527 3932 dbSNP
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rs921140168 3941 dbSNP
rs539706381 3942 dbSNP
rs192127758 3946 dbSNP
rs566672397 3947 dbSNP
rs1420301183 3952 dbSNP
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rs908576159 3966 dbSNP
rs758351443 3974 dbSNP
rs1235126919 3975 dbSNP
rs940088665 3989 dbSNP
rs534022853 3992 dbSNP
rs555608031 3993 dbSNP
rs1229474826 4011 dbSNP
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rs1312031705 4021 dbSNP
rs1412635729 4024 dbSNP
rs1028892054 4025 dbSNP
rs1313067034 4026 dbSNP
rs752178359 4041 dbSNP
rs755509900 4042 dbSNP
rs889787963 4046 dbSNP
rs1055303773 4047 dbSNP
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rs1187701580 4053 dbSNP
rs1340289227 4056 dbSNP
rs183004818 4057 dbSNP
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rs1398543999 4065 dbSNP
rs187382548 4066 dbSNP
rs1045413730 4067 dbSNP
rs1340005890 4068 dbSNP
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rs138659832 4088 dbSNP
rs886045141 4088 dbSNP
rs577985242 4099 dbSNP
rs1319456287 4100 dbSNP
rs961507896 4101 dbSNP
rs369489322 4103 dbSNP
rs998603613 4110 dbSNP
rs1352332011 4119 dbSNP
rs1033139937 4120 dbSNP
rs545273391 4127 dbSNP
rs1027122546 4128 dbSNP
rs1401671254 4135 dbSNP
rs1460248583 4147 dbSNP
rs1487802254 4147 dbSNP
rs1420429951 4163 dbSNP
rs560496354 4171 dbSNP
rs527870031 4177 dbSNP
rs1469805244 4184 dbSNP
rs755820428 4189 dbSNP
rs1259824414 4198 dbSNP
rs1028169993 4210 dbSNP
rs112297385 4215 dbSNP
rs190660373 4220 dbSNP
rs553904776 4221 dbSNP
rs1181547831 4225 dbSNP
rs561345682 4227 dbSNP
rs955456568 4230 dbSNP
rs1211720131 4232 dbSNP
rs1411698930 4235 dbSNP
rs1421022662 4241 dbSNP
rs147501140 4247 dbSNP
rs1222913378 4248 dbSNP
rs1015542734 4252 dbSNP
rs961390698 4255 dbSNP
rs777221691 4273 dbSNP
rs981841489 4284 dbSNP
rs780171641 4287 dbSNP
rs1053506220 4288 dbSNP
rs938130066 4301 dbSNP
rs1165943189 4305 dbSNP
rs1463695829 4306 dbSNP
rs113030671 4337 dbSNP
rs1406100285 4342 dbSNP
rs748846675 4346 dbSNP
rs138485279 4348 dbSNP
rs1050780256 4349 dbSNP
rs949597935 4350 dbSNP
rs1042702402 4358 dbSNP
rs902843537 4359 dbSNP
rs770407344 4360 dbSNP
rs1247157055 4373 dbSNP
rs773851221 4381 dbSNP
rs1309817535 4383 dbSNP
rs1314873346 4407 dbSNP
rs149626166 4413 dbSNP
rs892848051 4417 dbSNP
rs1237918710 4424 dbSNP
rs996637986 4427 dbSNP
rs1346604625 4428 dbSNP
rs867990504 4439 dbSNP
rs1019640996 4443 dbSNP
rs1442390866 4459 dbSNP
rs886045142 4464 dbSNP
rs994230624 4466 dbSNP
rs1294589397 4474 dbSNP
rs17034226 4479 dbSNP
rs890995233 4480 dbSNP
rs551695255 4483 dbSNP
rs1235947055 4499 dbSNP
rs1008090070 4504 dbSNP
rs17034228 4505 dbSNP
rs1380185235 4506 dbSNP
rs1171865424 4508 dbSNP
rs1425829174 4519 dbSNP
rs1455594527 4519 dbSNP
rs1438353805 4527 dbSNP
rs534079988 4528 dbSNP
rs555571183 4534 dbSNP
rs1216955727 4536 dbSNP
rs1485147068 4539 dbSNP
rs565324540 4547 dbSNP
rs567362385 4548 dbSNP
rs1235893110 4573 dbSNP
rs538319593 4579 dbSNP
rs982760594 4583 dbSNP
rs879135456 4586 dbSNP
rs1414326901 4587 dbSNP
rs1302645401 4590 dbSNP
rs1214464652 4591 dbSNP
rs1333013682 4594 dbSNP
rs923645892 4596 dbSNP
rs1400935551 4598 dbSNP
rs1375078758 4599 dbSNP
rs775285864 4602 dbSNP
rs556409337 4605 dbSNP
rs1311252889 4618 dbSNP
rs1436688190 4623 dbSNP
rs58002309 4631 dbSNP
rs1359796706 4637 dbSNP
rs866449956 4642 dbSNP
rs1169731226 4644 dbSNP
rs748478348 4646 dbSNP
rs970919606 4647 dbSNP
rs1421496484 4648 dbSNP
rs1448290249 4649 dbSNP
rs1331396108 4650 dbSNP
rs760348771 4655 dbSNP
rs924165005 4659 dbSNP
rs1212550965 4670 dbSNP
rs936920371 4672 dbSNP
rs989233182 4673 dbSNP
rs886045143 4677 dbSNP
rs1306272274 4682 dbSNP
rs1276613223 4685 dbSNP
rs1219654877 4693 dbSNP
rs1345367720 4698 dbSNP
rs1054515053 4699 dbSNP
rs866827433 4703 dbSNP
rs1218439508 4705 dbSNP
rs1291704179 4708 dbSNP
rs1397996344 4713 dbSNP
rs1380070873 4727 dbSNP
rs182580560 4730 dbSNP
rs1460480729 4731 dbSNP
rs144489409 4732 dbSNP
rs1049529022 4733 dbSNP
rs765502534 4736 dbSNP
rs1189697939 4737 dbSNP
rs1424024518 4742 dbSNP
rs1199553568 4743 dbSNP
rs1174985458 4744 dbSNP
rs1481298614 4745 dbSNP
rs890882888 4746 dbSNP
rs1199781283 4747 dbSNP
rs1007978853 4748 dbSNP
rs1334661785 4750 dbSNP
rs1271659255 4751 dbSNP
rs370211174 4753 dbSNP
rs1247360659 4755 dbSNP
rs553759348 4756 dbSNP
rs911701750 4757 dbSNP
rs944651873 4769 dbSNP
rs773363593 4773 dbSNP
rs1332015411 4776 dbSNP
rs897051594 4784 dbSNP
rs148437823 4789 dbSNP
rs542929859 4790 dbSNP
rs561517528 4794 dbSNP
rs1027382711 4801 dbSNP
rs994093777 4808 dbSNP
rs1420393497 4833 dbSNP
rs796473644 4837 dbSNP
rs886045144 4841 dbSNP
rs959440455 4843 dbSNP
rs868558700 4847 dbSNP
rs888568760 4861 dbSNP
rs1025030792 4863 dbSNP
rs1212032193 4864 dbSNP
rs1171020870 4866 dbSNP
rs1012729126 4877 dbSNP
rs1260404175 4878 dbSNP
rs970819578 4890 dbSNP
rs978225101 4900 dbSNP
rs1356018928 4923 dbSNP
rs1310074535 4926 dbSNP
rs924134099 4929 dbSNP
rs377056964 4931 dbSNP
rs576590010 4934 dbSNP
rs866257362 4935 dbSNP
rs1387165379 4942 dbSNP
rs914212317 4944 dbSNP
rs1435438341 4951 dbSNP
rs1031220044 4952 dbSNP
rs1286803684 4953 dbSNP
rs369257328 4954 dbSNP
rs1380465153 4959 dbSNP
rs956368912 4960 dbSNP
rs544294241 4961 dbSNP
rs932299346 4962 dbSNP
rs1342200000 4966 dbSNP
rs1049862535 4969 dbSNP
rs912290664 4971 dbSNP
rs562486521 4979 dbSNP
rs1036815659 4980 dbSNP
rs897018988 4982 dbSNP
rs1203679301 4994 dbSNP
rs995827846 4995 dbSNP
rs1286936327 4996 dbSNP
rs117347999 5009 dbSNP
rs1345763069 5010 dbSNP
rs895064272 5011 dbSNP
rs1012225135 5014 dbSNP
rs1024993115 5015 dbSNP
rs886045145 5023 dbSNP
rs1291159683 5026 dbSNP
rs1401558332 5027 dbSNP
rs772520606 5027 dbSNP
rs188051509 5036 dbSNP
rs1432374941 5037 dbSNP
rs1403695591 5039 dbSNP
rs1174888105 5043 dbSNP
rs1197429915 5044 dbSNP
rs1478640784 5046 dbSNP
rs560209785 5051 dbSNP
rs1415433395 5059 dbSNP
rs1191503115 5061 dbSNP
rs970788521 5065 dbSNP
rs930557875 5066 dbSNP
rs751663783 5067 dbSNP
rs888436803 5072 dbSNP
rs1031170731 5075 dbSNP
rs1249500754 5078 dbSNP
rs958262216 5099 dbSNP
rs990061138 5104 dbSNP
rs1029205678 5109 dbSNP
rs773492574 5111 dbSNP
rs527547472 5126 dbSNP
rs549041171 5133 dbSNP
rs1341815637 5142 dbSNP
rs985115586 5149 dbSNP
rs1390882343 5167 dbSNP
rs1404678060 5170 dbSNP
rs1169111988 5171 dbSNP
rs912261302 5172 dbSNP
rs1467546838 5174 dbSNP
rs943773378 5196 dbSNP
rs972496428 5206 dbSNP
rs1031167537 5208 dbSNP
rs768094574 5209 dbSNP
rs1362218615 5211 dbSNP
rs567432080 5212 dbSNP
rs577300305 5223 dbSNP
rs1277741025 5224 dbSNP
rs1188364669 5231 dbSNP
rs1011149798 5235 dbSNP
rs1021982254 5241 dbSNP
rs953137780 5257 dbSNP
rs753112550 5259 dbSNP
rs1272313643 5260 dbSNP
rs985900364 5265 dbSNP
rs17034230 5267 dbSNP
rs75064936 5268 dbSNP
rs972344946 5280 dbSNP
rs148451859 5281 dbSNP
rs1488786557 5283 dbSNP
rs192672583 5287 dbSNP
rs930592412 5288 dbSNP
rs1164662466 5292 dbSNP
rs1046412732 5293 dbSNP
rs906570832 5294 dbSNP
rs1426333239 5295 dbSNP
rs1164020936 5296 dbSNP
rs1469738636 5298 dbSNP
rs999601281 5304 dbSNP
rs909907170 5308 dbSNP
rs1189252267 5319 dbSNP
rs948012448 5321 dbSNP
rs1219137548 5325 dbSNP
rs184529007 5329 dbSNP
rs1472219121 5335 dbSNP
rs1222825109 5336 dbSNP
rs1347992772 5340 dbSNP
rs1447640344 5342 dbSNP
rs561795855 5343 dbSNP
rs893884503 5343 dbSNP
rs762453158 5352 dbSNP
rs1420034038 5361 dbSNP
rs1325780576 5364 dbSNP
rs10494179 5369 dbSNP
rs778444298 5370 dbSNP
rs987708662 5382 dbSNP
rs1400338493 5385 dbSNP
rs1378629317 5389 dbSNP
rs745334273 5390 dbSNP
rs1440341245 5392 dbSNP
rs1335181524 5396 dbSNP
rs1339880523 5407 dbSNP
rs1478913985 5408 dbSNP
rs965049156 5412 dbSNP
rs886045146 5414 dbSNP
rs1355081344 5417 dbSNP
rs1022515856 5419 dbSNP
rs888794735 5420 dbSNP
rs972380113 5422 dbSNP
rs189009112 5423 dbSNP
rs1007670017 5431 dbSNP
rs1018607502 5432 dbSNP
rs562143251 5435 dbSNP
rs1284297229 5439 dbSNP
rs1275817423 5441 dbSNP
rs1484478009 5441 dbSNP
rs886045147 5441 dbSNP
rs774012334 5444 dbSNP
rs142497673 5445 dbSNP
rs576571157 5461 dbSNP
rs1256431983 5463 dbSNP
rs983955627 5466 dbSNP
rs192325588 5467 dbSNP
rs1173932187 5471 dbSNP
rs530179804 5472 dbSNP
rs947993498 5481 dbSNP
rs1185724817 5485 dbSNP
rs915780838 5492 dbSNP
rs111232035 5496 dbSNP
rs1158032622 5498 dbSNP
rs1046378031 5499 dbSNP
rs1378245211 5502 dbSNP
rs1253738135 5503 dbSNP
rs906454365 5507 dbSNP
rs935278733 5514 dbSNP
rs1052451502 5517 dbSNP
rs981220621 5523 dbSNP
rs1218440457 5536 dbSNP
rs565480444 5538 dbSNP
rs1280385987 5540 dbSNP
rs1394320385 5545 dbSNP
rs1400821890 5556 dbSNP
rs763660272 5556 dbSNP
rs577781907 5567 dbSNP
rs1333408864 5573 dbSNP
rs927969273 5584 dbSNP
rs893863806 5588 dbSNP
rs1446683465 5590 dbSNP
rs746951580 5597 dbSNP
rs1463917563 5601 dbSNP
rs1029146648 5609 dbSNP
rs1425493653 5621 dbSNP
rs939445166 5626 dbSNP
rs374395998 5629 dbSNP
rs889325501 5630 dbSNP
rs1052494541 5631 dbSNP
rs1183120385 5633 dbSNP
rs1314246057 5633 dbSNP
rs4348723 5634 dbSNP
rs1198545882 5635 dbSNP
rs560173078 5636 dbSNP
rs1260388721 5638 dbSNP
rs886045148 5638 dbSNP
rs1256173950 5643 dbSNP
rs1310781997 5644 dbSNP
rs946833276 5644 dbSNP
rs1043907646 5646 dbSNP
rs962273126 5649 dbSNP
rs1379961804 5654 dbSNP
rs993771614 5658 dbSNP
rs1239447119 5668 dbSNP
rs1457874513 5672 dbSNP
rs889403555 5673 dbSNP
rs1025760059 5683 dbSNP
rs952476314 5692 dbSNP
rs984316532 5696 dbSNP
rs1460686963 5700 dbSNP
rs1366387189 5704 dbSNP
rs1040471147 5706 dbSNP
rs1423936112 5709 dbSNP
rs1406591213 5712 dbSNP
rs763132577 5716 dbSNP
rs560718700 5717 dbSNP
rs145945936 5718 dbSNP
rs1025983047 5734 dbSNP
rs1263953352 5736 dbSNP
rs1199341014 5738 dbSNP
rs1376893158 5739 dbSNP
rs371583408 5743 dbSNP
rs1322478640 5748 dbSNP
rs1173169714 5749 dbSNP
rs981942336 5751 dbSNP
rs10801933 5752 dbSNP
rs1465174750 5757 dbSNP
rs1379052163 5775 dbSNP
rs1331909224 5777 dbSNP
rs1006044110 5801 dbSNP
rs76569370 5805 dbSNP
rs1329842073 5808 dbSNP
rs184708484 5809 dbSNP
rs1458091955 5817 dbSNP
rs1052435461 5824 dbSNP
rs1387668611 5831 dbSNP
rs4548441 5842 dbSNP
rs565621888 5850 dbSNP
rs981369746 5851 dbSNP
rs946821152 5852 dbSNP
rs188827143 5857 dbSNP
rs889213656 5862 dbSNP
rs868196412 5863 dbSNP
rs1433030340 5866 dbSNP
rs570155185 5878 dbSNP
rs1211940427 5883 dbSNP
rs1259594421 5890 dbSNP
rs898054425 5891 dbSNP
rs571125198 5892 dbSNP
rs1214586412 5893 dbSNP
rs1197484084 5894 dbSNP
rs1229179783 5899 dbSNP
rs537458689 5910 dbSNP
rs914022206 5915 dbSNP
rs1347241769 5920 dbSNP
rs993732752 5925 dbSNP
rs886045149 5930 dbSNP
rs1489403063 5932 dbSNP
rs1210408744 5939 dbSNP
rs867065576 5943 dbSNP
rs753914676 5944 dbSNP
rs1025305155 5945 dbSNP
rs1387076264 5960 dbSNP
rs952519596 5963 dbSNP
rs1339465578 5980 dbSNP
rs1266392181 5981 dbSNP
rs1421028556 5982 dbSNP
rs886045150 5994 dbSNP
rs4595366 5996 dbSNP
rs1424623068 6005 dbSNP
rs1465987392 6005 dbSNP
rs568085530 6026 dbSNP
rs6428677 6027 dbSNP
rs927812186 6033 dbSNP
rs1262793389 6036 dbSNP
rs1191755092 6039 dbSNP
rs1351731794 6045 dbSNP
rs1458849814 6046 dbSNP
rs565735526 6049 dbSNP
rs1388939201 6051 dbSNP
rs1199876437 6052 dbSNP
rs956593324 6056 dbSNP
rs1342797367 6057 dbSNP
rs553719854 6060 dbSNP
rs915240525 6076 dbSNP
rs946673242 6077 dbSNP
rs993091889 6081 dbSNP
rs1339559930 6084 dbSNP
rs536289395 6085 dbSNP
rs1047378450 6088 dbSNP
rs1340680952 6093 dbSNP
rs941456592 6098 dbSNP
rs748353186 6106 dbSNP
rs1393742273 6108 dbSNP
rs1400731325 6113 dbSNP
rs1217682911 6115 dbSNP
rs1470536486 6117 dbSNP
rs181588954 6129 dbSNP
rs1040500802 6139 dbSNP
rs1023250110 6144 dbSNP
rs754212840 6150 dbSNP
rs1292792460 6156 dbSNP
rs993702994 6160 dbSNP
rs1440729621 6161 dbSNP
rs1035578210 6163 dbSNP
rs1049743566 6165 dbSNP
rs756882671 6170 dbSNP
rs1200938471 6174 dbSNP
rs1317146422 6185 dbSNP
rs1323058331 6191 dbSNP
rs1220182351 6196 dbSNP
rs3811007 6200 dbSNP
rs3811006 6213 dbSNP
rs1489769120 6214 dbSNP
rs1023311135 6218 dbSNP
rs1341720115 6228 dbSNP
rs904928516 6235 dbSNP
rs1003319236 6236 dbSNP
rs184820374 6238 dbSNP
rs1034850587 6239 dbSNP
rs1400119543 6240 dbSNP
rs956562251 6247 dbSNP
rs1467465843 6249 dbSNP
rs1420528513 6258 dbSNP
rs1162855782 6270 dbSNP
rs1471878234 6272 dbSNP
rs1370269520 6276 dbSNP
rs1218550212 6288 dbSNP
rs1457276090 6290 dbSNP
rs1236241666 6309 dbSNP
rs139953261 6317 dbSNP
rs77318780 6322 dbSNP
rs1458022524 6342 dbSNP
rs545101862 6355 dbSNP
rs886045151 6361 dbSNP
rs1022593317 6378 dbSNP
rs968151847 6383 dbSNP
rs1357931630 6387 dbSNP
rs968010735 6390 dbSNP
rs1416039371 6391 dbSNP
rs1424476545 6396 dbSNP
rs189697580 6414 dbSNP
rs910730765 6416 dbSNP
rs1383944899 6417 dbSNP
rs943512123 6418 dbSNP
rs1421859866 6420 dbSNP
rs771399036 6425 dbSNP
rs1360345400 6428 dbSNP
rs1429574966 6432 dbSNP
rs1286823658 6434 dbSNP
rs1380625648 6443 dbSNP
rs7414259 6444 dbSNP
rs1228410157 6451 dbSNP
rs1439125345 6452 dbSNP
rs929558438 6468 dbSNP
rs886045152 6475 dbSNP
rs1470424072 6477 dbSNP
rs1242284003 6486 dbSNP
rs887432599 6496 dbSNP
rs1245909365 6499 dbSNP
rs976171280 6500 dbSNP
rs1219025891 6508 dbSNP
rs867245134 6509 dbSNP
rs1352791939 6527 dbSNP
rs1215296316 6529 dbSNP
rs929423349 6529 dbSNP
rs1213905869 6532 dbSNP
rs1239443233 6533 dbSNP
rs1350818086 6542 dbSNP
rs572059562 6546 dbSNP
rs887995656 6553 dbSNP
rs949026372 6565 dbSNP
rs1333084188 6568 dbSNP
rs1303952658 6573 dbSNP
rs1419228840 6576 dbSNP
rs1044736408 6577 dbSNP
rs1358689621 6584 dbSNP
rs1160454129 6586 dbSNP
rs905699029 6599 dbSNP
rs886045153 6603 dbSNP
rs375912178 6610 dbSNP
rs1002743425 6622 dbSNP
rs1035930237 6631 dbSNP
rs891739053 6635 dbSNP
rs1380070644 6636 dbSNP
rs1003288125 6638 dbSNP
rs1287533053 6640 dbSNP
rs746958675 6641 dbSNP
rs892223275 6650 dbSNP
rs1156423162 6655 dbSNP
rs1278494451 6657 dbSNP
rs1217879565 6658 dbSNP
rs1009791934 6671 dbSNP
rs1284235557 6674 dbSNP
rs1022142828 6681 dbSNP
rs774333141 6681 dbSNP
rs968357183 6682 dbSNP
rs1300130520 6689 dbSNP
rs1431507773 6691 dbSNP
rs986103232 6696 dbSNP
rs768615892 6700 dbSNP
rs1173831092 6701 dbSNP
rs965982860 6708 dbSNP
rs1416004817 6710 dbSNP
rs1429714672 6711 dbSNP
rs976057378 6719 dbSNP
rs1448891062 6720 dbSNP
rs17034249 6722 dbSNP
rs1186632610 6725 dbSNP
rs531472535 6731 dbSNP
rs929418145 6733 dbSNP
rs1482628047 6740 dbSNP
rs985348723 6743 dbSNP
rs909405218 6746 dbSNP
rs1462988320 6749 dbSNP
rs543735468 6750 dbSNP
rs948985368 6751 dbSNP
rs5777244 6757 dbSNP
rs1349607515 6764 dbSNP
rs1044703621 6765 dbSNP
rs907464167 6766 dbSNP
rs1301073741 6773 dbSNP
rs1262844135 6774 dbSNP
rs929590997 6779 dbSNP
rs562835629 6795 dbSNP
rs1330456613 6796 dbSNP
rs1463833143 6798 dbSNP
rs1312958940 6800 dbSNP
rs1170681468 6807 dbSNP
rs1425382634 6807 dbSNP
rs532222719 6811 dbSNP
rs908884264 6812 dbSNP
rs1463063380 6822 dbSNP
rs1056160668 6838 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guaccAGGGUGG--AGGGACGGAc 5'
               | | ||:  |:||||||| 
Target 5' --ccuUACAACUAAUUCCUGCCUu 3'
 		1 - 22
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 81839.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guaccAGGGUGG--AGGGACGGAc 5'
               | | ||:  |:||||||| 
Target 5' --ccuUACAACUAAUUCCUGCCUu 3'
 		1 - 22
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions MCF7
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRR1045082. RNA binding protein: AGO2. Condition:Untreated ...

- Farazi TA; Ten Hoeve JJ; Brown M; et al., 2014, Genome biology.

Article - Farazi TA; Ten Hoeve JJ; Brown M; et al.
- Genome biology, 2014
BACKGROUND: Various microRNAs (miRNAs) are up- or downregulated in tumors. However, the repression of cognate miRNA targets responsible for the phenotypic effects of this dysregulation in patients remains largely unexplored. To define miRNA targets and associated pathways, together with their relationship to outcome in breast cancer, we integrated patient-paired miRNA-mRNA expression data with a set of validated miRNA targets and pathway inference. RESULTS: To generate a biochemically-validated set of miRNA-binding sites, we performed argonaute-2 photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (AGO2-PAR-CLIP) in MCF7 cells. We then defined putative miRNA-target interactions using a computational model, which ranked and selected additional TargetScan-predicted interactions based on features of our AGO2-PAR-CLIP binding-site data. We subselected modeled interactions according to the abundance of their constituent miRNA and mRNA transcripts in tumors, and we took advantage of the variability of miRNA expression within molecular subtypes to detect miRNA repression. Interestingly, our data suggest that miRNA families control subtype-specific pathways; for example, miR-17, miR-19a, miR-25, and miR-200b show high miRNA regulatory activity in the triple-negative, basal-like subtype, whereas miR-22 and miR-24 do so in the HER2 subtype. An independent dataset validated our findings for miR-17 and miR-25, and showed a correlation between the expression levels of miR-182 targets and overall patient survival. Pathway analysis associated miR-17, miR-19a, and miR-200b with leukocyte transendothelial migration. CONCLUSIONS: We combined PAR-CLIP data with patient expression data to predict regulatory miRNAs, revealing potential therapeutic targets and prognostic markers in breast cancer.
LinkOut: [PMID: 24398324]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000355485.2 | 3UTR | CCUUACAACUAAUUCCUGCCUUUCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000355485.2 | 3UTR | CCUUACAACUAAUUCCUGCCUUUCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset SRR1045082
Method / RBP PAR-CLIP / AGO2
Cell line / Condition MCF7 / Untreated
Location of target site ENST00000355485.2 | 3UTR | CCUUACAACUAAUUCCUGCCUUUCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 24398324 / SRX388831
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
481 hsa-miR-6808-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058861 VANGL1 VANGL planar cell polarity protein 1 2 6
MIRT065801 HOXC8 homeobox C8 2 6
MIRT108715 XIAP X-linked inhibitor of apoptosis 2 2
MIRT113314 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 2 2
MIRT129749 AGTRAP angiotensin II receptor associated protein 2 2
MIRT140199 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT166797 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 4
MIRT180260 PRRG4 proline rich and Gla domain 4 2 2
MIRT307008 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT325577 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT370131 TRIB3 tribbles pseudokinase 3 2 2
MIRT370517 ZNRF3 zinc and ring finger 3 2 2
MIRT386083 ZNF609 zinc finger protein 609 2 2
MIRT395059 TNFAIP2 TNF alpha induced protein 2 2 2
MIRT406920 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT443500 MXI1 MAX interactor 1, dimerization protein 2 4
MIRT443532 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT444630 GSPT1 G1 to S phase transition 1 2 2
MIRT446287 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT447170 MFSD8 major facilitator superfamily domain containing 8 2 2
MIRT447914 SLC35E2 solute carrier family 35 member E2 2 2
MIRT448204 B4GALT7 beta-1,4-galactosyltransferase 7 2 4
MIRT451117 RPS19 ribosomal protein S19 2 2
MIRT451467 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT451511 ALOX15 arachidonate 15-lipoxygenase 2 2
MIRT452069 ZNF585B zinc finger protein 585B 2 10
MIRT452224 HAVCR1 hepatitis A virus cellular receptor 1 2 6
MIRT452586 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452643 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT452730 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 4
MIRT452745 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT452772 TCEA3 transcription elongation factor A3 2 4
MIRT452836 FAM131B family with sequence similarity 131 member B 2 2
MIRT452875 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452884 PRSS45 protease, serine 45 2 2
MIRT452973 ZNF844 zinc finger protein 844 2 6
MIRT453031 ZNF527 zinc finger protein 527 2 4
MIRT453175 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT453436 GLG1 golgi glycoprotein 1 2 2
MIRT453613 ZNF557 zinc finger protein 557 2 2
MIRT453714 TBX20 T-box 20 2 2
MIRT453916 GABRR2 gamma-aminobutyric acid type A receptor rho2 subunit 2 2
MIRT453974 ATP13A4 ATPase 13A4 2 6
MIRT454075 SLC35E3 solute carrier family 35 member E3 2 2
MIRT454256 CCDC125 coiled-coil domain containing 125 2 2
MIRT454994 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT455150 TBC1D25 TBC1 domain family member 25 2 2
MIRT455489 NPY4R neuropeptide Y receptor Y4 2 2
MIRT455706 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT455878 SLC35C2 solute carrier family 35 member C2 2 2
MIRT455954 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT455978 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456220 LIX1L limb and CNS expressed 1 like 2 6
MIRT456241 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT456283 HRNR hornerin 2 2
MIRT456743 TMEM239 transmembrane protein 239 2 2
MIRT456927 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457005 ZNF669 zinc finger protein 669 2 4
MIRT457149 MXRA7 matrix remodeling associated 7 2 4
MIRT457348 HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 2 2
MIRT457478 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457553 ZC3H6 zinc finger CCCH-type containing 6 2 2
MIRT457752 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT457990 APAF1 apoptotic peptidase activating factor 1 2 4
MIRT458405 ABCF1 ATP binding cassette subfamily F member 1 2 4
MIRT458468 SNX22 sorting nexin 22 2 6
MIRT458518 GSG2 histone H3 associated protein kinase 2 6
MIRT458564 C10orf71 chromosome 10 open reading frame 71 2 2
MIRT458654 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT458753 CES2 carboxylesterase 2 2 2
MIRT458788 ZNF786 zinc finger protein 786 2 2
MIRT458805 CYP8B1 cytochrome P450 family 8 subfamily B member 1 2 2
MIRT458902 PFAS phosphoribosylformylglycinamidine synthase 2 2
MIRT458959 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459002 KIAA1551 KIAA1551 2 2
MIRT459109 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459333 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459403 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459557 BTD biotinidase 2 4
MIRT460252 IL17RB interleukin 17 receptor B 2 2
MIRT460369 TXNDC16 thioredoxin domain containing 16 2 4
MIRT460519 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460707 RNF157 ring finger protein 157 2 2
MIRT460788 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT460806 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT460845 EGF epidermal growth factor 2 4
MIRT460951 NOA1 nitric oxide associated 1 2 2
MIRT461017 SYT7 synaptotagmin 7 2 2
MIRT461132 RAB36 RAB36, member RAS oncogene family 2 4
MIRT461215 TIPIN TIMELESS interacting protein 2 2
MIRT461408 SLFN12L schlafen family member 12 like 2 8
MIRT461565 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461829 SNAP23 synaptosome associated protein 23 2 2
MIRT461869 ZNF317 zinc finger protein 317 2 2
MIRT462088 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462219 MLH1 mutL homolog 1 2 2
MIRT462438 GTPBP10 GTP binding protein 10 2 4
MIRT462512 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 8
MIRT462542 PLLP plasmolipin 2 4
MIRT462895 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT462975 ZNF788 zinc finger family member 788 2 2
MIRT463079 ZNF639 zinc finger protein 639 2 4
MIRT463905 WNT7B Wnt family member 7B 2 2
MIRT464126 VPS35 VPS35, retromer complex component 2 2
MIRT464835 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465532 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465586 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT466097 TMEM184C transmembrane protein 184C 2 2
MIRT466220 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT466696 TAF13 TATA-box binding protein associated factor 13 2 4
MIRT467019 SSBP2 single stranded DNA binding protein 2 2 4
MIRT467261 SPPL2A signal peptide peptidase like 2A 2 2
MIRT467760 SLC35F1 solute carrier family 35 member F1 2 4
MIRT469015 RNF41 ring finger protein 41 2 2
MIRT469071 RNF20 ring finger protein 20 2 2
MIRT469582 RARA retinoic acid receptor alpha 2 2
MIRT471070 PIM2 Pim-2 proto-oncogene, serine/threonine kinase 2 2
MIRT471480 PDE7B phosphodiesterase 7B 2 2
MIRT471653 PANK2 pantothenate kinase 2 2 4
MIRT471852 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472327 NF2 neurofibromin 2 2 2
MIRT472838 MTMR10 myotubularin related protein 10 2 4
MIRT473058 MORN4 MORN repeat containing 4 2 6
MIRT473119 MLXIP MLX interacting protein 2 2
MIRT474187 LETMD1 LETM1 domain containing 1 2 2
MIRT474373 KLLN killin, p53-regulated DNA replication inhibitor 2 6
MIRT474445 KLHL18 kelch like family member 18 2 6
MIRT474624 KLF2 Kruppel like factor 2 2 4
MIRT474892 KCTD5 potassium channel tetramerization domain containing 5 2 2
MIRT475293 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475404 ICMT isoprenylcysteine carboxyl methyltransferase 2 4
MIRT475691 HHIPL1 HHIP like 1 2 2
MIRT476416 GDE1 glycerophosphodiester phosphodiesterase 1 2 8
MIRT476811 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477083 FAM208A family with sequence similarity 208 member A 2 6
MIRT477654 EFNA1 ephrin A1 2 2
MIRT478232 DDX52 DExD-box helicase 52 2 2
MIRT478491 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478762 CS citrate synthase 2 2
MIRT478822 CRTAP cartilage associated protein 2 2
MIRT479204 CLCN5 chloride voltage-gated channel 5 2 6
MIRT479306 CFL2 cofilin 2 2 2
MIRT479922 CCDC117 coiled-coil domain containing 117 2 6
MIRT480237 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480361 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480736 BPTF bromodomain PHD finger transcription factor 2 2
MIRT481074 B4GALT1 beta-1,4-galactosyltransferase 1 2 2
MIRT481104 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT481272 ATXN7L3 ataxin 7 like 3 2 2
MIRT481438 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT481577 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 2 2
MIRT481625 ARHGAP1 Rho GTPase activating protein 1 2 2
MIRT482263 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT482380 AEN apoptosis enhancing nuclease 2 2
MIRT486076 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT486947 DTX2 deltex E3 ubiquitin ligase 2 2 2
MIRT487274 CCNF cyclin F 2 2
MIRT487360 PHF15 jade family PHD finger 2 1 1
MIRT487471 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487532 GXYLT2 glucoside xylosyltransferase 2 2 4
MIRT487975 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489048 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT489071 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT489725 CALML3 calmodulin like 3 2 2
MIRT490849 ADD2 adducin 2 2 2
MIRT491851 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT492643 PLXNA1 plexin A1 2 2
MIRT492696 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT495462 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT495494 VTI1B vesicle transport through interaction with t-SNAREs 1B 2 2
MIRT495729 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT495775 ZNF546 zinc finger protein 546 2 4
MIRT495807 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT495827 TMEM151A transmembrane protein 151A 2 2
MIRT496079 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 4
MIRT496103 SNX17 sorting nexin 17 2 2
MIRT496140 RBL1 RB transcriptional corepressor like 1 2 2
MIRT496182 TRIM73 tripartite motif containing 73 2 2
MIRT496236 TRIM74 tripartite motif containing 74 2 2
MIRT496265 SHROOM2 shroom family member 2 2 2
MIRT496280 SLC2A13 solute carrier family 2 member 13 2 2
MIRT496292 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT496500 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT496545 EBI3 Epstein-Barr virus induced 3 2 2
MIRT496706 TRIM39 tripartite motif containing 39 2 2
MIRT496799 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT498685 SERPINH1 serpin family H member 1 2 2
MIRT498742 SNTN sentan, cilia apical structure protein 2 6
MIRT500560 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT503041 CAMSAP2 calmodulin regulated spectrin associated protein family member 2 2 2
MIRT503438 SLC25A45 solute carrier family 25 member 45 2 6
MIRT507273 FERMT2 fermitin family member 2 2 2
MIRT507345 FAM168A family with sequence similarity 168 member A 2 2
MIRT507970 BCL2L13 BCL2 like 13 2 4
MIRT508613 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT508905 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT510122 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510471 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512944 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 4
MIRT514159 TMEM145 transmembrane protein 145 2 4
MIRT514202 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT517228 PRIM1 DNA primase subunit 1 2 4
MIRT517484 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517984 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT518736 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT518912 CDC14B cell division cycle 14B 2 2
MIRT520057 YIPF4 Yip1 domain family member 4 2 6
MIRT524625 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT524889 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT529054 CDK18 cyclin dependent kinase 18 2 2
MIRT531311 GPR26 G protein-coupled receptor 26 2 2
MIRT533554 TPM4 tropomyosin 4 2 2
MIRT534864 RAB15 RAB15, member RAS oncogene family 2 4
MIRT541073 SENP5 SUMO1/sentrin specific peptidase 5 2 2
MIRT544171 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT547847 IGF1R insulin like growth factor 1 receptor 2 2
MIRT548044 GOLIM4 golgi integral membrane protein 4 2 2
MIRT550431 ORC4 origin recognition complex subunit 4 2 2
MIRT550586 SLC2A5 solute carrier family 2 member 5 2 2
MIRT550602 CBY3 chibby family member 3 2 2
MIRT550993 RBM38 RNA binding motif protein 38 2 2
MIRT551343 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT551376 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT551399 MRI1 methylthioribose-1-phosphate isomerase 1 2 4
MIRT551594 HDGFRP2 HDGF like 2 2 2
MIRT553095 UBXN2A UBX domain protein 2A 2 4
MIRT554232 SLC17A5 solute carrier family 17 member 5 2 2
MIRT555407 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557317 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT559321 ATXN1 ataxin 1 2 2
MIRT559663 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT562322 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT563670 SMC4 structural maintenance of chromosomes 4 2 2
MIRT565907 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT569838 SOX11 SRY-box 11 2 2
MIRT570250 CPNE5 copine 5 2 2
MIRT575575 Cd99 CD99 antigen 2 2
MIRT608281 NOP14 NOP14 nucleolar protein 2 2
MIRT610868 ARSA arylsulfatase A 2 2
MIRT614145 THAP1 THAP domain containing 1 2 6
MIRT614602 IRF2BPL interferon regulatory factor 2 binding protein like 2 2
MIRT615239 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617433 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618182 ZNF681 zinc finger protein 681 2 4
MIRT618886 MBL2 mannose binding lectin 2 2 2
MIRT618988 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619200 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620327 AQP6 aquaporin 6 2 2
MIRT620461 CENPN centromere protein N 2 2
MIRT621654 UBXN2B UBX domain protein 2B 2 2
MIRT622826 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT623364 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT624934 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624990 ZNF665 zinc finger protein 665 2 4
MIRT625501 SMAD9 SMAD family member 9 2 2
MIRT625603 KLHL23 kelch like family member 23 2 2
MIRT625672 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625892 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626242 ZNF749 zinc finger protein 749 2 2
MIRT626635 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626998 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627472 STX7 syntaxin 7 2 2
MIRT627686 RPL28 ribosomal protein L28 2 2
MIRT627902 OLFML2A olfactomedin like 2A 2 2
MIRT627992 NDRG3 NDRG family member 3 2 2
MIRT628328 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628349 CCDC68 coiled-coil domain containing 68 2 2
MIRT630198 TLN1 talin 1 2 2
MIRT631961 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT633402 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633844 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2