miRTarBase - #MIRT058884


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pre-miRNA Information
pre-miRNA hsa-mir-488   
Genomic Coordinates chr1: 177029363 - 177029445
Synonyms MIRN488, hsa-mir-488, MIR488
Description Homo sapiens miR-488 stem-loop
Comment miR-488-3p cloned in has a 1 nt 3' extension (U), which is incompatible with the genome sequence.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-488-3p
Sequence 52| UUGAAAGGCUAUUUCUUGGUC |72
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 1 - 177029390 27229138, 28550310, 29165639, 29233923 MiREDiBase
A-to-I 6 1 - 177029389 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN1079766 12 COSMIC
COSN19660590 16 COSMIC
COSN30190142 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1210074726 7 dbSNP
rs1310911055 17 dbSNP
rs1248997320 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C11orf58   
Synonyms IMAGE145052, SMAP
Description chromosome 11 open reading frame 58
Transcript NM_014267   
Expression
Putative miRNA Targets on C11orf58
3'UTR of C11orf58
(miRNA target sites are highlighted)		 
>C11orf58|NM_014267|3'UTR
   1 CTCCCAAACGCTTAGTCTTTGTATTAAAAGTAAGCCTTATTGTTACAATGCACAGTGGAGGACTGCTTATAGAGCACAGA
  81 CCTTTGTATTATAATTTTTAAAAAGGCCCTTTTAAATAATTACAAAGAGTGTTTGCTTTCAAATGCCATGGGTTACACTT
 161 TTATGGGCATGACTATAACCATTTTTGTAAAGAGTAAGAGTTGTATAAAATAAGAAATAAATACAGTACTCAACTTCCTT
 241 TCATATTAGCATCATCAACCCTCTAATTCACCTTATGGGGGAAATGCTTCTTTTTGTTTGTGATAGCTATTTTATCATTT
 321 CCTTCATATTTTTCTCTTATAAAAATGTATTTGATACTGTGATATGTTCACGAAAAGTATTCTTTAATTATTCTTTGTTA
 401 TAGTAGAGCTGTTCATTATGGATATTTCTGCTGCCAGTCACAATCTAAATTAATTTTGGCAAAAGATTGGGTACTTAGTT
 481 TCCTGTTACTGAGTTAGCTCTACTCTTTTGGACCAAAGCAACATGAGAGCAAGTACTTTTCACACTTGTTAAGATGGAGT
 561 TATAACTGTCATACATTTGGAATATTATGATCCCAAGTAGTCTTTTTATAATTTGGATTGTATCGTATGTTAGATTTTTG
 641 ATAAAATTTGGCCAATTTTTACAGAAGAAATTCTCTGATCATTTAGTTCTATCTATTTAGAAATATGTAAAACTGGATTT
 721 TTTTTTAAGTAATATGTGACCAAAGTTAATTTTGTCCCAAAGGTCTAAATAAAGAGCAGTTTCCCATATTTGGCTGTGAT
 801 ACCTTTATCCTCATTATCTACAAATGAGGAACAGGCTTACTGATAAGAAGCTGAAACAAGAAATTCTCTTCATTTTATCC
 881 CAGTGCTATTTTATTGATTAATTACTAAAAAGTATTACTTTCTAATTTTATTGCTGTTTCTGTTGGTGTGAGATTAGAAT
 961 CATCTGACTGCTATTAGGTGGTTGATTTGTATAGCTGATTAACACAAATTGCATTATGAGCTAGTAAATGGATCTTTGGA
1041 TAATGGGGTCCAAATTCTTAATGTTTATAAGTAACAAGTTCAAAGGCTTTAGTCACACCTGTTTGTGAGCTGAGCTATTA
1121 TACATCTACATACTTAAAGGATGTATTTGGAGTGTTGGATTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCATTC
1201 TGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTAACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCC
1281 TCAGCCTCCCAAGTAGTTGGGACTACAGTCATGTGCCACTACTCCTGGCTAATTTTTTGTATTTTTAGTAGAGTTGGGGT
1361 TTCACGGTGTTAGCCAGGATCGTCTCGATCTCCTGACCTCGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTAC
1441 AGGCGTGAGCCACCACGCCCAGCCTTGGAGTGTTGGAATTTTTAAAAATTATTCTTATGTCACTTTGAAATGTAGAACGT
1521 GTTGCCATGTGCGGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGCTGGATCACCTGAAGTCAGGAGT
1601 TTGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGTGCATGCCT
1681 GTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAAGCGGAGGTTGCAGTGAGCCAAGATCAC
1761 CCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAAATTTAGAATGTGTTAGA
1841 GAAATTTAACAAGTAGAACAGGTGATTTCTGGTTGATAGACTCTATCTTGCAGTATATTTATTTCATGTATCAGACCCCA
1921 AAGTTGTTGCCTTGTTATTTTTTTAATTTCTCACATTTTTGAAAAATAGATGCTATCCTCTATAGTAAAATATTGAATCA
2001 CTTTATAGTAGACAATACATATGACATTTAACAAATACTTGGTTTGAAAAAGTTTGGCTTTATTCAACAATTTTAGTTTG
2081 CCCACTGATTTTCAAATGTCTGTGGGATTGCTTATAACTAAGTAGAAAGTGAAGACTGATTTTTACTTAAGAATGGGATA
2161 GAGATGAGTTTTATGGTTTTTAAAAGTATTTTCAGTTCATTATTTAAATGTTGGGTTGTTGATATGGTCTTGTTTCTGAT
2241 AAGGAAATAGGAGCAACTTGTTTTAAAATAACTACACTAAAAGACTTTCTTCATCTCCGTATAGAGAAATCCAGATTTCA
2321 ATTAATTCATTTATTGGGTGCTAACAAAATTCAGGGTTAGAGTAAATTTAGGTCTGTTGGTCCATGTGGCCTGGTTTCCT
2401 AGCACCCATTAAACATAATGCTATCTTTTAAGCCTGAACATGTGGGTTTTTTAAATCAAATTGGAAAAAAATTAGACAAC
2481 TGATGTCATGCTGTCTTGGTATCCATACTAAAAAAGTATCAGGAAAATAGATTATTTTTGTGCTGTGAAACACTATTCAG
2561 TGGAAAGTTTAGTGGCAACTTTTCCATATCATTCATGACTTAATACCTGAAATGCACTTTTAAATGTTTGCCTTATATCC
2641 AAGTGTTTACTTGTATCCATGACCTAACCGTCTATTGAAAAGAATGTTTGCAGATGCAGATTGCAATGTTGTTTGTATTC
2721 ATAGGCAAAAGTCCTCTTCTCTAGTATAATTTTTTAAATCTGAGAGAATTGAAGGTACAGAAAAAAATTCTGGAGTGCCT
2801 GAACCACAGTTTGAGAGCACAAAGGTCACATTCTTTCAGTAAATTTGGGGGAAATAAATTTCAGCTACCTGGTTAGCTTC
2881 AGTGACTACTTACACACAGGGCTTTGGTTCCATTACTTGTTTCCACCACAGCCACATCCTAAATACTTGGAATATCCGAA
2961 AACAACTTCTAAAATCACTCAATAAAAGTATTCACTTCTAACCAACTCCTCCTCCTTTATACCTGCTCTGTGTTAGGGCG
3041 TAGTCTGTTTCCACCTCTGTAAGTCCTATCTAGGCTTCCTGATCTATCAATTCAGTATCATGATTGTTAACCCAAACGAC
3121 TTCCTGGAAAATTCCCAGCCCTAGATGTATCCAAGCCCTCCTACCCTCACCAGTTATTTCTGGAGAAAGATCACCAAATG
3201 TATAAATCCGTATTAGTAAAAATTGGTTTTAACTGACCTCAGCACTGCCC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cugGUUCU---UUAUCGGAAAGUu 5'
             ||: |   ||   ||||||| 
Target 5' ataCAGTACTCAACTTCCTTTCAt 3'
 221 - 244 142.00 -7.70
2 
miRNA  3' cuggUUCUUUAUCGGAAAGUu 5'
              |: ||:|| |:||||| 
Target 5' tgagAGCAAGTA-CTTTTCAc 3'
 524 - 543 140.00 -8.70
3 
miRNA  3' cuGGUUCUUUAUCGGAAAGUu 5'
            ::|| ||| : |||||:| 
Target 5' ttTTAA-AAAGGCCCTTTTAa 3'
 96 - 115 138.00 -6.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30530305 69 COSMIC
COSN31584057 75 COSMIC
COSN21665512 83 COSMIC
COSN31598200 101 COSMIC
COSN31614513 141 COSMIC
COSN31554011 153 COSMIC
COSN26577463 228 COSMIC
COSN31535181 668 COSMIC
COSN31513907 674 COSMIC
COSN6996317 676 COSMIC
COSN21738331 766 COSMIC
COSN8217119 936 COSMIC
COSN22906201 1063 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171901974 6 dbSNP
rs187197803 10 dbSNP
rs774237823 11 dbSNP
rs773068629 12 dbSNP
rs1285241061 13 dbSNP
rs1233748281 16 dbSNP
rs1380304955 24 dbSNP
rs759381914 33 dbSNP
rs767562802 35 dbSNP
rs1447928491 37 dbSNP
rs774613510 40 dbSNP
rs892818113 41 dbSNP
rs1219852214 43 dbSNP
rs1275120155 47 dbSNP
rs760235543 50 dbSNP
rs1447671182 55 dbSNP
rs1361065847 64 dbSNP
rs1273952481 65 dbSNP
rs1168646213 71 dbSNP
rs1399766114 71 dbSNP
rs1296872015 75 dbSNP
rs1339643720 77 dbSNP
rs1215575274 82 dbSNP
rs1415714902 83 dbSNP
rs1163687479 87 dbSNP
rs774769192 87 dbSNP
rs1443928908 91 dbSNP
rs1012220949 93 dbSNP
rs1482373464 96 dbSNP
rs1020539524 101 dbSNP
rs557655042 103 dbSNP
rs569581944 104 dbSNP
rs1202019045 105 dbSNP
rs967919292 107 dbSNP
rs1003079765 108 dbSNP
rs1453462954 112 dbSNP
rs1357892528 121 dbSNP
rs1035771831 122 dbSNP
rs1196825863 126 dbSNP
rs958799077 127 dbSNP
rs536934862 131 dbSNP
rs1376263898 132 dbSNP
rs1296613123 143 dbSNP
rs1475844734 143 dbSNP
rs1350754313 152 dbSNP
rs1169462813 155 dbSNP
rs1323934250 162 dbSNP
rs1388042645 164 dbSNP
rs1423826531 174 dbSNP
rs991473751 201 dbSNP
rs919895358 209 dbSNP
rs952760625 212 dbSNP
rs1406589896 215 dbSNP
rs1175040652 218 dbSNP
rs1478786308 230 dbSNP
rs1246972226 235 dbSNP
rs1164061705 247 dbSNP
rs1221229046 260 dbSNP
rs985074028 261 dbSNP
rs1367365701 262 dbSNP
rs1288698454 266 dbSNP
rs556551882 270 dbSNP
rs907792725 277 dbSNP
rs775239623 278 dbSNP
rs1384631122 284 dbSNP
rs1353697132 287 dbSNP
rs1322282484 288 dbSNP
rs560914682 290 dbSNP
rs1368546705 293 dbSNP
rs574730101 302 dbSNP
rs1040208393 305 dbSNP
rs1432395511 307 dbSNP
rs1363499637 335 dbSNP
rs542314762 340 dbSNP
rs1340393609 341 dbSNP
rs1344577511 344 dbSNP
rs190517063 356 dbSNP
rs572698127 359 dbSNP
rs1425381529 362 dbSNP
rs1359049133 366 dbSNP
rs1208171749 373 dbSNP
rs1266706488 380 dbSNP
rs1050153231 383 dbSNP
rs1190697007 384 dbSNP
rs117986410 398 dbSNP
rs1485809570 402 dbSNP
rs1448717016 407 dbSNP
rs1011252045 416 dbSNP
rs1042356402 420 dbSNP
rs1312881800 425 dbSNP
rs146869959 431 dbSNP
rs1003432480 452 dbSNP
rs1456302799 455 dbSNP
rs1035888206 457 dbSNP
rs1400432769 458 dbSNP
rs367587667 460 dbSNP
rs1361123570 465 dbSNP
rs1162152540 468 dbSNP
rs761568819 476 dbSNP
rs1359252093 478 dbSNP
rs543757440 479 dbSNP
rs6677 482 dbSNP
rs528843757 484 dbSNP
rs1171805997 487 dbSNP
rs1428317765 493 dbSNP
rs1318210144 494 dbSNP
rs1260210802 500 dbSNP
rs1184118299 512 dbSNP
rs1363988817 524 dbSNP
rs1242602694 528 dbSNP
rs1027073065 534 dbSNP
rs1320245141 539 dbSNP
rs952788027 545 dbSNP
rs1218968723 551 dbSNP
rs1434886426 554 dbSNP
rs1316128859 555 dbSNP
rs982836932 563 dbSNP
rs144545196 564 dbSNP
rs1335455666 587 dbSNP
rs1449900018 592 dbSNP
rs1401967240 594 dbSNP
rs1264954890 603 dbSNP
rs1461742524 615 dbSNP
rs565613519 625 dbSNP
rs758222333 626 dbSNP
rs1266536518 634 dbSNP
rs923085662 639 dbSNP
rs1459168264 641 dbSNP
rs1204109208 642 dbSNP
rs1257963818 650 dbSNP
rs1195455344 653 dbSNP
rs931820322 655 dbSNP
rs1422000085 664 dbSNP
rs1050103770 665 dbSNP
rs866478899 680 dbSNP
rs1246772872 688 dbSNP
rs533923362 688 dbSNP
rs1314326620 689 dbSNP
rs1473319731 691 dbSNP
rs4576801 692 dbSNP
rs1387499400 694 dbSNP
rs1041403988 696 dbSNP
rs1303811414 699 dbSNP
rs903418087 707 dbSNP
rs1394808556 713 dbSNP
rs555905554 718 dbSNP
rs1441558296 724 dbSNP
rs1336858061 726 dbSNP
rs1181267519 727 dbSNP
rs1417524067 735 dbSNP
rs1269799237 736 dbSNP
rs1057405506 757 dbSNP
rs1230362883 758 dbSNP
rs56508201 766 dbSNP
rs745844437 766 dbSNP
rs894607715 769 dbSNP
rs1013098365 783 dbSNP
rs1027063402 789 dbSNP
rs1279598986 813 dbSNP
rs888562887 815 dbSNP
rs1204482752 819 dbSNP
rs1302996798 820 dbSNP
rs1257544360 824 dbSNP
rs985095913 828 dbSNP
rs1482191844 830 dbSNP
rs751494936 836 dbSNP
rs1301744648 837 dbSNP
rs1004609028 845 dbSNP
rs1466582618 845 dbSNP
rs1361784146 858 dbSNP
rs542536720 858 dbSNP
rs551199284 869 dbSNP
rs1451749601 872 dbSNP
rs1251213690 882 dbSNP
rs1199862603 883 dbSNP
rs1480609612 889 dbSNP
rs1015567507 894 dbSNP
rs1197057925 897 dbSNP
rs1483975127 897 dbSNP
rs1489216077 897 dbSNP
rs964879827 898 dbSNP
rs1179428301 910 dbSNP
rs1410515037 920 dbSNP
rs1203991648 926 dbSNP
rs1347928579 930 dbSNP
rs975808977 949 dbSNP
rs1223730239 953 dbSNP
rs975934484 972 dbSNP
rs1281741586 974 dbSNP
rs867443991 979 dbSNP
rs1327482319 1001 dbSNP
rs945177176 1004 dbSNP
rs1380537034 1017 dbSNP
rs1302614440 1028 dbSNP
rs1371758089 1036 dbSNP
rs985968658 1038 dbSNP
rs1427518212 1041 dbSNP
rs978154383 1051 dbSNP
rs925012572 1058 dbSNP
rs1306286914 1061 dbSNP
rs936547265 1067 dbSNP
rs569495005 1068 dbSNP
rs894953435 1073 dbSNP
rs1257652955 1076 dbSNP
rs754940985 1081 dbSNP
rs1203801058 1087 dbSNP
rs1322374772 1091 dbSNP
rs1260891961 1096 dbSNP
rs149892084 1097 dbSNP
rs1310641038 1100 dbSNP
rs1340511195 1100 dbSNP
rs1270071635 1101 dbSNP
rs1225863869 1112 dbSNP
rs907283080 1118 dbSNP
rs993629913 1126 dbSNP
rs1452031192 1127 dbSNP
rs1404126520 1129 dbSNP
rs1026728896 1134 dbSNP
rs887785001 1135 dbSNP
rs1006847723 1138 dbSNP
rs1490390448 1139 dbSNP
rs938329810 1141 dbSNP
rs1057366726 1142 dbSNP
rs1370174909 1150 dbSNP
rs761483021 1154 dbSNP
rs1460510219 1156 dbSNP
rs1240810644 1159 dbSNP
rs143996558 1159 dbSNP
rs1189601316 1160 dbSNP
rs1245249014 1160 dbSNP
rs1311632054 1160 dbSNP
rs1316385702 1160 dbSNP
rs1327916778 1160 dbSNP
rs1354204326 1160 dbSNP
rs1408256720 1160 dbSNP
rs1443196072 1160 dbSNP
rs1491181347 1160 dbSNP
rs779195786 1160 dbSNP
rs1017890997 1161 dbSNP
rs948863216 1175 dbSNP
rs1048585926 1176 dbSNP
rs1164139457 1183 dbSNP
rs1432204088 1184 dbSNP
rs1470231338 1185 dbSNP
rs1391119400 1189 dbSNP
rs200282917 1190 dbSNP
rs1167333567 1197 dbSNP
rs1231974367 1197 dbSNP
rs1453684650 1198 dbSNP
rs964984486 1199 dbSNP
rs976236607 1203 dbSNP
rs1370470085 1205 dbSNP
rs1437340421 1206 dbSNP
rs1030540567 1209 dbSNP
rs966860287 1211 dbSNP
rs1016097279 1214 dbSNP
rs1365789918 1216 dbSNP
rs1372813690 1226 dbSNP
rs555329339 1227 dbSNP
rs1347178609 1228 dbSNP
rs550754473 1228 dbSNP
rs568443467 1229 dbSNP
rs535450904 1230 dbSNP
rs901140826 1247 dbSNP
rs1160587878 1249 dbSNP
rs1400810344 1253 dbSNP
rs1273910093 1255 dbSNP
rs1406700186 1257 dbSNP
rs569113127 1269 dbSNP
rs916479756 1270 dbSNP
rs1263122881 1274 dbSNP
rs1487967945 1276 dbSNP
rs949332640 1292 dbSNP
rs1046205875 1293 dbSNP
rs181770449 1297 dbSNP
rs1249498994 1305 dbSNP
rs929340649 1314 dbSNP
rs1047814909 1318 dbSNP
rs1221145276 1326 dbSNP
rs998177434 1329 dbSNP
rs1030204829 1334 dbSNP
rs887743577 1340 dbSNP
rs1336187575 1354 dbSNP
rs536546667 1355 dbSNP
rs546296888 1366 dbSNP
rs1021427950 1367 dbSNP
rs1348138829 1374 dbSNP
rs1429614053 1382 dbSNP
rs968973379 1383 dbSNP
rs1479680186 1387 dbSNP
rs144951547 1388 dbSNP
rs924362189 1401 dbSNP
rs1240429439 1402 dbSNP
rs938319910 1418 dbSNP
rs900749669 1432 dbSNP
rs576700961 1438 dbSNP
rs997808025 1445 dbSNP
rs1432700714 1446 dbSNP
rs1321163259 1448 dbSNP
rs1297525603 1450 dbSNP
rs1361235026 1456 dbSNP
rs916152635 1457 dbSNP
rs1379846634 1458 dbSNP
rs544105893 1464 dbSNP
rs561226500 1471 dbSNP
rs1309973895 1474 dbSNP
rs1403949095 1484 dbSNP
rs1171645525 1485 dbSNP
rs1320660528 1490 dbSNP
rs1049140779 1492 dbSNP
rs1418054441 1498 dbSNP
rs115487608 1499 dbSNP
rs73421166 1501 dbSNP
rs756333875 1502 dbSNP
rs1032110768 1504 dbSNP
rs111486254 1512 dbSNP
rs556697154 1518 dbSNP
rs1306797471 1519 dbSNP
rs1293387043 1520 dbSNP
rs990432728 1533 dbSNP
rs540638303 1534 dbSNP
rs1049743860 1539 dbSNP
rs185991654 1548 dbSNP
rs1007450961 1549 dbSNP
rs1433157685 1554 dbSNP
rs1457452755 1557 dbSNP
rs1353230332 1560 dbSNP
rs190401167 1562 dbSNP
rs1445826075 1563 dbSNP
rs1159978491 1565 dbSNP
rs981995913 1568 dbSNP
rs1181866567 1569 dbSNP
rs918379447 1571 dbSNP
rs929837324 1572 dbSNP
rs1177528160 1574 dbSNP
rs1048730771 1575 dbSNP
rs999127729 1585 dbSNP
rs1031416314 1597 dbSNP
rs1455805565 1601 dbSNP
rs909287658 1606 dbSNP
rs1290364047 1613 dbSNP
rs942128394 1615 dbSNP
rs1337116331 1619 dbSNP
rs1307306397 1620 dbSNP
rs1391120895 1633 dbSNP
rs551061649 1634 dbSNP
rs1305407421 1641 dbSNP
rs1039052015 1642 dbSNP
rs1425809649 1643 dbSNP
rs1365559939 1645 dbSNP
rs900507597 1646 dbSNP
rs1359468128 1648 dbSNP
rs915557243 1652 dbSNP
rs1158673297 1657 dbSNP
rs1450135898 1664 dbSNP
rs997734396 1665 dbSNP
rs1378317275 1666 dbSNP
rs1052030759 1669 dbSNP
rs1289636487 1674 dbSNP
rs1207515305 1679 dbSNP
rs563149975 1686 dbSNP
rs1260858917 1696 dbSNP
rs1237868365 1698 dbSNP
rs1227331842 1703 dbSNP
rs1326683338 1715 dbSNP
rs999681055 1718 dbSNP
rs1285556896 1733 dbSNP
rs1284008784 1734 dbSNP
rs530570068 1736 dbSNP
rs957803416 1737 dbSNP
rs1322150420 1740 dbSNP
rs1011989192 1741 dbSNP
rs1385744776 1749 dbSNP
rs984356368 1751 dbSNP
rs1483193276 1752 dbSNP
rs1183030714 1755 dbSNP
rs1391100132 1760 dbSNP
rs1414214202 1762 dbSNP
rs1178266793 1764 dbSNP
rs1471742012 1770 dbSNP
rs181352544 1774 dbSNP
rs1196643114 1780 dbSNP
rs910161495 1781 dbSNP
rs567411450 1783 dbSNP
rs1264650178 1786 dbSNP
rs185432792 1786 dbSNP
rs1331915965 1791 dbSNP
rs1358537159 1792 dbSNP
rs1224434537 1798 dbSNP
rs1323290142 1798 dbSNP
rs1037632154 1801 dbSNP
rs1230256649 1804 dbSNP
rs1491350878 1804 dbSNP
rs1197978183 1805 dbSNP
rs1203891974 1805 dbSNP
rs1244536627 1805 dbSNP
rs1276911204 1805 dbSNP
rs1317700604 1805 dbSNP
rs1319659034 1805 dbSNP
rs1447134004 1805 dbSNP
rs1460648631 1805 dbSNP
rs1491509083 1805 dbSNP
rs55803725 1805 dbSNP
rs1340619734 1807 dbSNP
rs1309327261 1809 dbSNP
rs1270163939 1817 dbSNP
rs1226192690 1825 dbSNP
rs1361525400 1825 dbSNP
rs866608336 1826 dbSNP
rs1408682185 1827 dbSNP
rs1275135959 1828 dbSNP
rs1346660741 1830 dbSNP
rs922678601 1832 dbSNP
rs1276903155 1834 dbSNP
rs1357690850 1840 dbSNP
rs918527230 1842 dbSNP
rs1411481585 1848 dbSNP
rs1347816993 1850 dbSNP
rs951406227 1851 dbSNP
rs1254078773 1853 dbSNP
rs1167897657 1859 dbSNP
rs1049817413 1866 dbSNP
rs889743257 1870 dbSNP
rs1183714004 1876 dbSNP
rs983965194 1880 dbSNP
rs1482154796 1881 dbSNP
rs1181145621 1884 dbSNP
rs1011331126 1891 dbSNP
rs547500731 1896 dbSNP
rs1438761751 1898 dbSNP
rs749489398 1906 dbSNP
rs904477109 1912 dbSNP
rs909748125 1916 dbSNP
rs1203621045 1921 dbSNP
rs942056177 1930 dbSNP
rs1170617358 1932 dbSNP
rs1424130458 1935 dbSNP
rs1292556688 1937 dbSNP
rs1039146970 1939 dbSNP
rs1377198421 1949 dbSNP
rs72862578 1957 dbSNP
rs1444034870 1967 dbSNP
rs539979426 1970 dbSNP
rs772772965 1972 dbSNP
rs1407888873 1973 dbSNP
rs1367428409 1976 dbSNP
rs558243713 1979 dbSNP
rs746417152 1983 dbSNP
rs1404277840 1984 dbSNP
rs1052223190 1996 dbSNP
rs902751465 1998 dbSNP
rs1213222380 2000 dbSNP
rs141923925 2005 dbSNP
rs1022729643 2006 dbSNP
rs1053955016 2009 dbSNP
rs1232630243 2012 dbSNP
rs1428605626 2016 dbSNP
rs397780979 2019 dbSNP
rs71670354 2019 dbSNP
rs1332497174 2020 dbSNP
rs7128876 2023 dbSNP
rs7109995 2026 dbSNP
rs1224536771 2027 dbSNP
rs1350281723 2039 dbSNP
rs1370630859 2047 dbSNP
rs1229596091 2049 dbSNP
rs1407791488 2052 dbSNP
rs1347281800 2067 dbSNP
rs1023352802 2068 dbSNP
rs1435058679 2069 dbSNP
rs1269694196 2074 dbSNP
rs1319801192 2075 dbSNP
rs1400902908 2080 dbSNP
rs1410793911 2081 dbSNP
rs1340617278 2082 dbSNP
rs776004377 2086 dbSNP
rs973019398 2101 dbSNP
rs1003152516 2104 dbSNP
rs1487830244 2111 dbSNP
rs1243888347 2115 dbSNP
rs1290621801 2119 dbSNP
rs1446591287 2120 dbSNP
rs1266507605 2129 dbSNP
rs7110136 2137 dbSNP
rs951329107 2156 dbSNP
rs556334240 2157 dbSNP
rs934162427 2159 dbSNP
rs1218575819 2163 dbSNP
rs984449029 2164 dbSNP
rs1252604556 2182 dbSNP
rs1271376565 2183 dbSNP
rs1449908225 2187 dbSNP
rs1016735119 2197 dbSNP
rs1387366496 2200 dbSNP
rs1190248929 2213 dbSNP
rs1470784521 2229 dbSNP
rs1388295178 2233 dbSNP
rs541692185 2237 dbSNP
rs1175845804 2245 dbSNP
rs1431922912 2254 dbSNP
rs946734611 2265 dbSNP
rs1187145219 2270 dbSNP
rs575065622 2273 dbSNP
rs1392186538 2276 dbSNP
rs1403249879 2277 dbSNP
rs974801020 2279 dbSNP
rs1448945144 2280 dbSNP
rs1322556362 2288 dbSNP
rs1205797134 2289 dbSNP
rs921992857 2294 dbSNP
rs1388904931 2297 dbSNP
rs1044139135 2300 dbSNP
rs1256342689 2307 dbSNP
rs933420898 2310 dbSNP
rs1310323457 2329 dbSNP
rs1297640521 2338 dbSNP
rs1214584207 2341 dbSNP
rs1363809689 2342 dbSNP
rs1363672518 2343 dbSNP
rs987481205 2361 dbSNP
rs1454218384 2366 dbSNP
rs558973039 2372 dbSNP
rs577175322 2373 dbSNP
rs935556600 2374 dbSNP
rs1054451993 2382 dbSNP
rs1171750726 2395 dbSNP
rs1429738640 2409 dbSNP
rs934549509 2413 dbSNP
rs773587021 2415 dbSNP
rs1358640971 2421 dbSNP
rs1185547287 2422 dbSNP
rs1445408099 2424 dbSNP
rs1203021454 2429 dbSNP
rs893946390 2430 dbSNP
rs1272837834 2435 dbSNP
rs1252906829 2440 dbSNP
rs1205747896 2441 dbSNP
rs948239571 2448 dbSNP
rs145789728 2449 dbSNP
rs1271843572 2453 dbSNP
rs1465489685 2457 dbSNP
rs1247550061 2460 dbSNP
rs1207638917 2462 dbSNP
rs1359625479 2465 dbSNP
rs1210393112 2473 dbSNP
rs765008262 2474 dbSNP
rs1245912142 2476 dbSNP
rs1427863398 2479 dbSNP
rs1188093238 2487 dbSNP
rs1299135606 2492 dbSNP
rs182611904 2503 dbSNP
rs1053026825 2505 dbSNP
rs895616774 2507 dbSNP
rs188844119 2509 dbSNP
rs574959736 2511 dbSNP
rs1014129795 2516 dbSNP
rs561113341 2518 dbSNP
rs75230645 2520 dbSNP
rs1003745999 2527 dbSNP
rs1162923955 2528 dbSNP
rs1421151050 2529 dbSNP
rs372544953 2530 dbSNP
rs1182708266 2543 dbSNP
rs1482654686 2544 dbSNP
rs1249534218 2550 dbSNP
rs762666080 2557 dbSNP
rs777943015 2571 dbSNP
rs1488533577 2583 dbSNP
rs1264399027 2587 dbSNP
rs961092465 2592 dbSNP
rs1242119762 2596 dbSNP
rs1005439526 2597 dbSNP
rs1458441189 2599 dbSNP
rs1289357964 2600 dbSNP
rs1029878524 2604 dbSNP
rs1349134451 2610 dbSNP
rs1044315 2616 dbSNP
rs566089237 2637 dbSNP
rs975231480 2642 dbSNP
rs1382005681 2646 dbSNP
rs1291929881 2665 dbSNP
rs1455530079 2671 dbSNP
rs1364613211 2678 dbSNP
rs911289998 2681 dbSNP
rs1029535281 2686 dbSNP
rs954774048 2695 dbSNP
rs1472159831 2704 dbSNP
rs1409598769 2707 dbSNP
rs1201471399 2709 dbSNP
rs1452147072 2722 dbSNP
rs946819890 2723 dbSNP
rs1207608144 2725 dbSNP
rs1486608238 2729 dbSNP
rs987962704 2735 dbSNP
rs1268409041 2739 dbSNP
rs923929889 2739 dbSNP
rs979554191 2745 dbSNP
rs539797053 2747 dbSNP
rs551927543 2748 dbSNP
rs1242754643 2749 dbSNP
rs1285632335 2750 dbSNP
rs1234600733 2752 dbSNP
rs1292708597 2762 dbSNP
rs11550904 2766 dbSNP
rs895774200 2770 dbSNP
rs1230400742 2775 dbSNP
rs1385892821 2781 dbSNP
rs949844828 2781 dbSNP
rs1044277742 2784 dbSNP
rs905706507 2789 dbSNP
rs1386140472 2791 dbSNP
rs1178403616 2792 dbSNP
rs1478305881 2805 dbSNP
rs371845100 2809 dbSNP
rs948333627 2810 dbSNP
rs1200811132 2814 dbSNP
rs1196085126 2818 dbSNP
rs1429803278 2819 dbSNP
rs1248163448 2826 dbSNP
rs1045210799 2832 dbSNP
rs376315949 2838 dbSNP
rs557984222 2843 dbSNP
rs192446363 2852 dbSNP
rs993830259 2873 dbSNP
rs1029868533 2892 dbSNP
rs1344843131 2892 dbSNP
rs955645839 2896 dbSNP
rs1229640159 2898 dbSNP
rs1365991814 2903 dbSNP
rs1297010995 2912 dbSNP
rs1007000576 2913 dbSNP
rs1411977982 2918 dbSNP
rs1473368887 2919 dbSNP
rs939082612 2920 dbSNP
rs144844210 2926 dbSNP
rs1335869316 2928 dbSNP
rs117947381 2929 dbSNP
rs759406571 2932 dbSNP
rs1156588169 2937 dbSNP
rs968248125 2938 dbSNP
rs1362847292 2958 dbSNP
rs1047265857 2959 dbSNP
rs1463502124 2960 dbSNP
rs183786587 2964 dbSNP
rs1187452654 2978 dbSNP
rs924082159 2980 dbSNP
rs1244600755 2981 dbSNP
rs1173491303 2984 dbSNP
rs1405024131 2986 dbSNP
rs1394751976 2989 dbSNP
rs956688188 2993 dbSNP
rs574176112 2998 dbSNP
rs767422047 2999 dbSNP
rs917157437 3004 dbSNP
rs1351111092 3006 dbSNP
rs1285031358 3007 dbSNP
rs1447640947 3013 dbSNP
rs1339624488 3015 dbSNP
rs1411741950 3015 dbSNP
rs1332028050 3028 dbSNP
rs1411574898 3031 dbSNP
rs949916904 3041 dbSNP
rs1316536838 3048 dbSNP
rs1005611818 3050 dbSNP
rs138682793 3055 dbSNP
rs1427297924 3060 dbSNP
rs899742435 3065 dbSNP
rs996805536 3069 dbSNP
rs1209983141 3073 dbSNP
rs553200919 3075 dbSNP
rs1184491483 3076 dbSNP
rs1029461583 3080 dbSNP
rs1251728399 3082 dbSNP
rs1203055154 3086 dbSNP
rs143830836 3086 dbSNP
rs1179357190 3091 dbSNP
rs955391689 3095 dbSNP
rs572723211 3097 dbSNP
rs1354589285 3098 dbSNP
rs1008953480 3099 dbSNP
rs1031520323 3118 dbSNP
rs956833197 3119 dbSNP
rs989872779 3134 dbSNP
rs915283959 3135 dbSNP
rs969575209 3142 dbSNP
rs577237870 3145 dbSNP
rs1407972230 3146 dbSNP
rs1351082855 3151 dbSNP
rs959308598 3161 dbSNP
rs1323720760 3162 dbSNP
rs115693165 3163 dbSNP
rs1411196116 3166 dbSNP
rs1161741341 3169 dbSNP
rs1473139168 3171 dbSNP
rs1379675816 3173 dbSNP
rs1433407414 3177 dbSNP
rs1481744557 3177 dbSNP
rs1247353895 3178 dbSNP
rs373920165 3183 dbSNP
rs187674421 3189 dbSNP
rs1371702645 3193 dbSNP
rs939533346 3199 dbSNP
rs752807134 3200 dbSNP
rs879397110 3210 dbSNP
rs908275673 3210 dbSNP
rs11550903 3211 dbSNP
rs1038039116 3214 dbSNP
rs1226490913 3218 dbSNP
rs899502031 3224 dbSNP
rs1387505764 3227 dbSNP
rs1274860555 3237 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10944.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cugGUUCU---UUAUCGGAAAGUu 5'
             ||: |   ||   ||||||| 
Target 5' auaCAGUACUCAACUUCCUUUCAu 3'
 		6 - 29
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000228136.4 | 3UTR | AAUAAAUACAGUACUCAACUUCCUUUCAUAUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE17306 Multiple myeloma -0.321 1.2e-2 0.410 1.7e-3 49 Click to see details
GSE28544 Breast cancer -0.454 1.3e-2 -0.486 8.0e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.539 2.9e-2 0.499 4.1e-2 13 Click to see details
GSE27834 Pluripotent stem cells -0.469 3.3e-2 -0.462 3.6e-2 16 Click to see details
GSE21687 Ependynoma primary tumors -0.208 5.0e-2 -0.236 3.0e-2 64 Click to see details
GSE32688 Pancreatic cancer 0.29 5.4e-2 0.343 2.7e-2 32 Click to see details
GSE42095 Differentiated embryonic stem cells -0.293 8.7e-2 -0.093 3.4e-1 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.248 1.2e-1 -0.280 8.8e-2 25 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.932 1.2e-1 1.000 5.0e-1 3 Click to see details
GSE38226 Liver fibrosis -0.247 1.4e-1 -0.201 1.9e-1 21 Click to see details
GSE19350 CNS germ cell tumors -0.191 2.8e-1 -0.189 2.8e-1 12 Click to see details
GSE21849 B cell lymphoma -0.082 3.4e-1 -0.154 2.1e-1 29 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.067 3.9e-1 -0.253 1.4e-1 20 Click to see details
GSE26953 Aortic valvular endothelial cells 0.004 4.9e-1 0.135 2.6e-1 24 Click to see details
GSE26953 Aortic valvular endothelial cells 0.004 4.9e-1 0.135 2.6e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC 0.679 0.07 0.486 0.16 6 Click to see details
ESCA 0.866 0.17 1.000 0.5 3 Click to see details
UCEC 0.244 0.22 0.224 0.24 12 Click to see details
PCPG 0.758 0.23 0.500 0.33 3 Click to see details
PRAD -0.189 0.24 0.185 0.25 16 Click to see details
LIHC -0.174 0.34 -0.357 0.19 8 Click to see details
HNSC -0.172 0.37 0.314 0.27 6 Click to see details
THCA 0.21 0.4 0.400 0.3 4 Click to see details
BRCA -0.07 0.41 -0.038 0.45 13 Click to see details
KIRP 0.113 0.43 0.200 0.37 5 Click to see details
KIRP 0.113 0.43 0.200 0.37 5 Click to see details
KIRP 0.113 0.43 0.200 0.37 5 Click to see details
KIRP 0.113 0.43 0.200 0.37 5 Click to see details
KIRP 0.113 0.43 0.200 0.37 5 Click to see details
KIRP 0.113 0.43 0.200 0.37 5 Click to see details
116 hsa-miR-488-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT005899 POMC proopiomelanocortin 3 1
MIRT038008 CYP2E1 cytochrome P450 family 2 subfamily E member 1 1 1
MIRT054483 SLC39A8 solute carrier family 39 member 8 2 1
MIRT058884 C11ORF58 chromosome 11 open reading frame 58 2 2
MIRT061194 MED17 mediator complex subunit 17 2 2
MIRT167237 TMEM167A transmembrane protein 167A 2 2
MIRT188343 ARID1A AT-rich interaction domain 1A 2 2
MIRT218170 MRPL18 mitochondrial ribosomal protein L18 2 2
MIRT218297 C6ORF120 chromosome 6 open reading frame 120 2 2
MIRT263337 ANAPC16 anaphase promoting complex subunit 16 2 2
MIRT294633 ZNF548 zinc finger protein 548 2 2
MIRT305053 SRPRB SRP receptor beta subunit 2 6
MIRT306846 FYTTD1 forty-two-three domain containing 1 2 2
MIRT442753 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT443955 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT444032 SYNM synemin 2 2
MIRT444519 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT444569 UNC5C unc-5 netrin receptor C 2 2
MIRT444779 ECE1 endothelin converting enzyme 1 2 2
MIRT445195 FAXC failed axon connections homolog 2 2
MIRT445345 FAM169A family with sequence similarity 169 member A 2 2
MIRT445539 TBC1D8 TBC1 domain family member 8 2 2
MIRT446058 RABIF RAB interacting factor 2 2
MIRT446358 EFCAB6 EF-hand calcium binding domain 6 2 2
MIRT446486 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT446973 CARKD NAD(P)HX dehydratase 2 2
MIRT446984 MOB1B MOB kinase activator 1B 2 2
MIRT446987 TMEM9B TMEM9 domain family member B 2 2
MIRT447376 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 2 2
MIRT447857 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT448077 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT448970 CBX5 chromobox 5 2 2
MIRT449072 RPS15A ribosomal protein S15a 2 2
MIRT449200 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449459 HAT1 histone acetyltransferase 1 2 2
MIRT449588 PCDHA6 protocadherin alpha 6 2 2
MIRT449885 ZNF621 zinc finger protein 621 2 2
MIRT449892 C11orf34 placenta expressed transcript 1 1 2
MIRT450669 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 2 2
MIRT450866 GPR107 G protein-coupled receptor 107 2 2
MIRT450881 EIF6 eukaryotic translation initiation factor 6 2 2
MIRT455373 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT458266 FUT10 fucosyltransferase 10 2 2
MIRT464839 RPS27A ribosomal protein S27a 2 12
MIRT465335 TPM3 tropomyosin 3 2 4
MIRT467939 SLC16A1 solute carrier family 16 member 1 2 2
MIRT468719 SDC4 syndecan 4 2 2
MIRT469844 PXK PX domain containing serine/threonine kinase like 2 8
MIRT474545 KLHDC3 kelch domain containing 3 2 2
MIRT480700 BRPF1 bromodomain and PHD finger containing 1 2 2
MIRT482087 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT491225 KCNA5 potassium voltage-gated channel subfamily A member 5 2 2
MIRT497790 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT497831 GPR26 G protein-coupled receptor 26 2 2
MIRT497910 HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 2 2
MIRT498428 DDX39A DExD-box helicase 39A 2 2
MIRT499196 TJAP1 tight junction associated protein 1 2 2
MIRT500396 ZNF281 zinc finger protein 281 2 6
MIRT501523 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 10
MIRT504445 MC2R melanocortin 2 receptor 2 2
MIRT505270 TUBB2A tubulin beta 2A class IIa 2 2
MIRT508584 CCDC115 coiled-coil domain containing 115 2 12
MIRT509269 NPM3 nucleophosmin/nucleoplasmin 3 2 4
MIRT512466 CCDC149 coiled-coil domain containing 149 2 2
MIRT513534 PRDM2 PR/SET domain 2 2 4
MIRT514218 ZNF83 zinc finger protein 83 2 4
MIRT518526 FLCN folliculin 2 6
MIRT524841 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT524855 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT525048 FRK fyn related Src family tyrosine kinase 2 2
MIRT528635 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT529557 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT532319 GHSR growth hormone secretagogue receptor 2 2
MIRT534232 SLC25A16 solute carrier family 25 member 16 2 2
MIRT534254 SLC12A7 solute carrier family 12 member 7 2 2
MIRT536223 LRRC41 leucine rich repeat containing 41 2 2
MIRT537658 ERBB2IP erbb2 interacting protein 2 2
MIRT537795 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT540404 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT544563 POLDIP3 DNA polymerase delta interacting protein 3 2 2
MIRT546045 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT546846 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT548480 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT549337 ARF6 ADP ribosylation factor 6 2 2
MIRT550855 SNAP47 synaptosome associated protein 47 2 4
MIRT551607 ZNF267 zinc finger protein 267 2 2
MIRT553222 TWF1 twinfilin actin binding protein 1 2 2
MIRT553874 SUPT7L SPT7 like, STAGA complex gamma subunit 2 4
MIRT557956 FAM222B family with sequence similarity 222 member B 2 2
MIRT559264 BAG4 BCL2 associated athanogene 4 2 4
MIRT562245 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT563184 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT563834 SMDT1 single-pass membrane protein with aspartate rich tail 1 2 2
MIRT563967 RAB6A RAB6A, member RAS oncogene family 2 2
MIRT564808 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565188 TSHZ1 teashirt zinc finger homeobox 1 2 2
MIRT565549 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 2
MIRT566969 LBR lamin B receptor 2 2
MIRT570926 ZNF284 zinc finger protein 284 2 2
MIRT612283 ZMAT3 zinc finger matrin-type 3 2 2
MIRT612695 PKNOX1 PBX/knotted 1 homeobox 1 2 2
MIRT625293 ZNF619 zinc finger protein 619 2 2
MIRT628496 LINS lines homolog 1 2 2
MIRT640282 FAM169B family with sequence similarity 169 member B 2 2
MIRT647212 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 2
MIRT654668 PSMB5 proteasome subunit beta 5 2 2
MIRT657516 HAS2 hyaluronan synthase 2 2 2
MIRT670337 C1orf106 chromosome 1 open reading frame 106 2 4
MIRT702010 MIDN midnolin 2 2
MIRT704253 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT710205 ENAH ENAH, actin regulator 2 2
MIRT712126 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT714890 COQ10B coenzyme Q10B 2 2
MIRT716588 PAX6 paired box 6 2 2
MIRT720810 CIAO1 cytosolic iron-sulfur assembly component 1 2 2
MIRT724953 AHCY adenosylhomocysteinase 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-488 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-488 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-488 Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-488 Chemotherapy sensitive High Epithelial Ovarian Cancer tissue
hsa-miR-488 Cisplatin 5460033 NSC119875 approved resistant Low Non-Small Cell Lung Cancer cell line (A549, H1299)
hsa-miR-488 Daunorubicin 30323 NSC82151 approved resistant High Acute Promyelocytic Leukemia cell line (HL60)
hsa-miR-488 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375)
hsa-miR-488 Taxane 9548828 sensitive High Breast Cancer tissue
hsa-miR-488 Doxorubicin 31703 NSC123127 approved sensitive High Anaplastic Thyroid Cancer tissue
hsa-mir-488 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-488 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-miR-488 Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-488 Pegylated interferon alpha+Ribavirin sensitive tissue (chronic hepatitis C)
hsa-miR-488 Doxorubicin 31703 NSC123127 approved resistant cell line (K562)
hsa-miR-488 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-488-3p Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-488-3p Cisplatin 5460033 NSC119875 approved sensitive Low Melanoma cell line (SK-Mel-28)
hsa-miR-488-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-488-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-488-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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