miRTarBase - #MIRT061195


—
pre-miRNA Information
pre-miRNA hsa-mir-520e   
Genomic Coordinates chr19: 53675711 - 53675797
Description Homo sapiens miR-520e stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-520e
Sequence 54| AAAGUGCUUCCUUUUUGAGGG |74
Evidence Experimental
Experiments Array-cloned
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MED17   
Synonyms CRSP6, CRSP77, DRIP80, SRB4, TRAP80
Description mediator complex subunit 17
Transcript NM_004268   
Expression
Putative miRNA Targets on MED17
3'UTR of MED17
(miRNA target sites are highlighted)		 
>MED17|NM_004268|3'UTR
   1 TTTTTTCCAGATGTTTCCTAAAGAAGTTTCCAGAAACTTTGACTTGAAATGTTTGCAGATCAACTATAAGCACAAAGAAG
  81 AGATAACTTCCAAAAGAGTGCTGTTTTTAAAAATAATAATTAGGAAATGTTTATTTAGCACTTTCAAACTTTTCACTTTA
 161 TAAATGACAAGTGCTTTGAAATGCAGAAGTTTATGTACAGTTGTATATACAGTATGACAAGATGTAAAATAATATGTTTT
 241 TCATGCAGTTTAAAATATTACTAACTTAAGGGTTTCTATGTGCTTTTTAAAATATTCCTTCTTTGATGTTGACATCAAAT
 321 AAAGTATGTGGTTTAAAAAAATCTCCAAATACCTTTTTTTCCCCCCAAATACTTTCTAAACTTTTTTTTTTTGAGATGGT
 401 ATCTCACTCTGTAGCCCAGTCTGGAGTGCAGTGGTGTGATCATGGTTCACTGCAGTCTTGACCTCCCAGGCTTAGGTGAT
 481 CCTTCTGTCTCAGCCTTCCGAGTAGCTGGGACCACAGGCATGCACAACCACGCCTGGCTAATTTTTGTATTTTTTATAAA
 561 GACAGGGTTTTTCCATGTTGCCCAGGCTGGTTTCGAACTCGGCTCAAGTGATCTACCTGCCTCTGCCTCCCAAAGTGCTA
 641 GGATTACAGGCGTGAGCCACCATGCCCAGCCTACTCTAAATTATTGATAACCTCTTCCTCCAGTTGTCTCCTTTAAGCTT
 721 TCCTGGGTCTAACCTACATAGGTAATTTAAGAACATCCTCAGAAAGGACAGCTGAAGGCAATAGGAGGCAGATTATCTCT
 801 TTAGGGCGTCCTCAAGTTTTTTTGGTCTGTTCTCCCACTTGATTGACCTCACCAGTTGAGACACCTAGTGTATGGCTCAT
 881 GCCCAGCCTTCCACCTGGGATTCTCCAGCCTCCACCCAGCAGCCCTGGATTGCTTTCTCCAATTAAGGCCTTTCCATCAG
 961 CTCTCTGCTTTTTCAAAGCGAAAAAACTAATGGATTAGTGGGTTATCTTTTCCAAGGAACAGGTTTGCACTTCTTGGAAA
1041 AAGTGCCTAAAGTGTGCCCATTAATATGAGGATAGATTTAGGCTCATAAGCCTTTTGGTAACACTGAAAGTAGTATCATA
1121 TAGGCAAGCTCTCCTTATAAGTAAGGCTTTCAATTTTTAAAACAGACATCCTGCTTTAACAATTTGTAAGATGACTGTGC
1201 AGTAATAAAAGTCCTTTGTATTTCTCCACCGTGTTTTCATTAAAGAAAAATGGAGCTTGTGGGCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggGAGUUUUUCC---U---UCGUGAAa 5'
            :| ::||| |   |   ||||||| 
Target 5' aaTTAGGAAATGTTTATTTAGCACTTt 3'
 118 - 144 143.00 -9.70
2 
miRNA  3' ggGAGUUUUUCC--UUCGUGAAa 5'
            :|:| ||| |  |||::||| 
Target 5' acTTTATAAATGACAAGTGCTTt 3'
 155 - 177 129.00 -6.40
3 
miRNA  3' gggaguuuuuccuuCGUGAAa 5'
                        |||||| 
Target 5' caaggaacaggtttGCACTTc 3'
 1013 - 1033 120.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1199454 84 ClinVar
COSN30162650 8 COSMIC
COSN30489983 18 COSMIC
COSN20077248 39 COSMIC
COSN31511632 47 COSMIC
COSN31601858 53 COSMIC
COSN30124195 72 COSMIC
COSN20077250 81 COSMIC
COSN31558844 83 COSMIC
COSN20081566 96 COSMIC
COSN30140431 96 COSMIC
COSN31548403 148 COSMIC
COSN32062322 393 COSMIC
COSN20363058 405 COSMIC
COSN16104957 979 COSMIC
COSN6612296 1164 COSMIC
COSN19559198 1169 COSMIC
COSN5710979 1427 COSMIC
COSN32134023 1685 COSMIC
COSN29260557 1897 COSMIC
COSN8879207 1972 COSMIC
COSN10094721 2079 COSMIC
COSN10094722 2518 COSMIC
COSN1550394 2553 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758228406 1 dbSNP
rs779963969 1 dbSNP
rs751901725 3 dbSNP
rs1334567148 9 dbSNP
rs918145258 11 dbSNP
rs1252857683 15 dbSNP
rs762055694 19 dbSNP
rs1195847529 21 dbSNP
rs1467164584 21 dbSNP
rs1396117557 23 dbSNP
rs948311149 27 dbSNP
rs767661961 28 dbSNP
rs1166437368 32 dbSNP
rs1421722296 34 dbSNP
rs750516785 36 dbSNP
rs751450680 38 dbSNP
rs756174275 43 dbSNP
rs1325302708 51 dbSNP
rs1167179091 56 dbSNP
rs1460280096 57 dbSNP
rs1479503615 59 dbSNP
rs7935747 62 dbSNP
rs1444046010 64 dbSNP
rs1241404769 67 dbSNP
rs568235455 67 dbSNP
rs920274051 75 dbSNP
rs1378275569 81 dbSNP
rs116795572 84 dbSNP
rs1272741705 93 dbSNP
rs373900829 99 dbSNP
rs1194376204 117 dbSNP
rs539317486 117 dbSNP
rs1166353247 133 dbSNP
rs765445302 134 dbSNP
rs1389971775 148 dbSNP
rs983636107 150 dbSNP
rs190879412 155 dbSNP
rs919049918 157 dbSNP
rs750665289 168 dbSNP
rs1448896767 185 dbSNP
rs1336207765 186 dbSNP
rs1328114626 187 dbSNP
rs773728591 189 dbSNP
rs77132304 191 dbSNP
rs900306213 207 dbSNP
rs1164419139 213 dbSNP
rs545874328 216 dbSNP
rs1386699322 228 dbSNP
rs946641545 231 dbSNP
rs150825608 232 dbSNP
rs904578586 242 dbSNP
rs1180320399 244 dbSNP
rs1331157072 245 dbSNP
rs889019563 254 dbSNP
rs1222750936 261 dbSNP
rs1268000584 264 dbSNP
rs1341197597 266 dbSNP
rs998958512 269 dbSNP
rs1241610884 273 dbSNP
rs1031595002 279 dbSNP
rs758602957 295 dbSNP
rs1276494165 317 dbSNP
rs1236843511 319 dbSNP
rs1332586175 322 dbSNP
rs1303601041 326 dbSNP
rs1404567289 332 dbSNP
rs1300302346 335 dbSNP
rs895819278 335 dbSNP
rs1007403082 337 dbSNP
rs1401313135 339 dbSNP
rs1407398229 342 dbSNP
rs1157314727 343 dbSNP
rs1042973406 353 dbSNP
rs1430418146 354 dbSNP
rs199746704 354 dbSNP
rs904330106 354 dbSNP
rs1023160908 361 dbSNP
rs1217537907 361 dbSNP
rs1447048394 362 dbSNP
rs970306884 363 dbSNP
rs1221993967 366 dbSNP
rs1209136810 369 dbSNP
rs1325668785 376 dbSNP
rs998732574 377 dbSNP
rs1453356317 381 dbSNP
rs553014429 382 dbSNP
rs796148870 382 dbSNP
rs71926524 383 dbSNP
rs1407406068 384 dbSNP
rs1027835038 386 dbSNP
rs1479638576 386 dbSNP
rs950483497 388 dbSNP
rs1187884240 392 dbSNP
rs1170939835 393 dbSNP
rs1383738085 394 dbSNP
rs1457884692 396 dbSNP
rs1241014271 403 dbSNP
rs1164291681 404 dbSNP
rs61904957 405 dbSNP
rs1387932521 424 dbSNP
rs1462281252 427 dbSNP
rs911681852 436 dbSNP
rs377306809 439 dbSNP
rs1202998419 445 dbSNP
rs965692346 446 dbSNP
rs1215375046 455 dbSNP
rs956836196 466 dbSNP
rs974432608 467 dbSNP
rs1013988732 469 dbSNP
rs1450239668 470 dbSNP
rs1383661086 471 dbSNP
rs1336613847 472 dbSNP
rs1364079678 476 dbSNP
rs1402894909 479 dbSNP
rs921825121 486 dbSNP
rs1435361881 489 dbSNP
rs1409757389 496 dbSNP
rs946670235 500 dbSNP
rs1319683177 501 dbSNP
rs1184433508 507 dbSNP
rs1445883294 507 dbSNP
rs1243267868 511 dbSNP
rs1244008696 515 dbSNP
rs1024949129 516 dbSNP
rs1182894781 527 dbSNP
rs969394971 529 dbSNP
rs769259458 532 dbSNP
rs572859027 533 dbSNP
rs1203407262 538 dbSNP
rs1306727243 542 dbSNP
rs1247478526 554 dbSNP
rs1248494763 560 dbSNP
rs1360229547 567 dbSNP
rs1465545179 573 dbSNP
rs923801482 574 dbSNP
rs909473068 577 dbSNP
rs1376084948 578 dbSNP
rs963533319 595 dbSNP
rs375300661 596 dbSNP
rs1353158109 601 dbSNP
rs1167847801 602 dbSNP
rs1426220969 604 dbSNP
rs1423560270 607 dbSNP
rs918985856 609 dbSNP
rs182140842 610 dbSNP
rs1452242118 612 dbSNP
rs1442252095 614 dbSNP
rs1028403410 616 dbSNP
rs1177742637 617 dbSNP
rs562239063 622 dbSNP
rs1225021172 632 dbSNP
rs778826366 632 dbSNP
rs529831704 652 dbSNP
rs557560538 653 dbSNP
rs943042101 658 dbSNP
rs369910365 666 dbSNP
rs995106211 670 dbSNP
rs1042945508 677 dbSNP
rs1308381523 680 dbSNP
rs1223674928 681 dbSNP
rs1028196747 693 dbSNP
rs575924576 696 dbSNP
rs1005493817 704 dbSNP
rs1302124692 708 dbSNP
rs559897275 722 dbSNP
rs1342256026 750 dbSNP
rs1364989055 751 dbSNP
rs1018689967 755 dbSNP
rs1014424014 757 dbSNP
rs527330483 759 dbSNP
rs921607205 775 dbSNP
rs999075544 782 dbSNP
rs1220492239 784 dbSNP
rs979371120 788 dbSNP
rs775043990 799 dbSNP
rs1052986883 805 dbSNP
rs923889319 806 dbSNP
rs186816654 808 dbSNP
rs895649250 809 dbSNP
rs1224564575 812 dbSNP
rs536705553 814 dbSNP
rs1013646011 828 dbSNP
rs1345240602 831 dbSNP
rs1025065169 837 dbSNP
rs917307884 838 dbSNP
rs1386510434 848 dbSNP
rs1288872838 864 dbSNP
rs950149705 866 dbSNP
rs905864489 867 dbSNP
rs1480661848 869 dbSNP
rs995284987 874 dbSNP
rs969344556 879 dbSNP
rs1002240743 880 dbSNP
rs886718017 881 dbSNP
rs150428941 888 dbSNP
rs1005033671 889 dbSNP
rs531472981 895 dbSNP
rs963686229 899 dbSNP
rs972631771 900 dbSNP
rs1204822839 905 dbSNP
rs1483134135 910 dbSNP
rs919406718 912 dbSNP
rs755470134 913 dbSNP
rs955065792 914 dbSNP
rs781678859 918 dbSNP
rs372492354 933 dbSNP
rs191653900 938 dbSNP
rs762658720 940 dbSNP
rs1258694928 945 dbSNP
rs965754176 949 dbSNP
rs995931390 956 dbSNP
rs867569767 957 dbSNP
rs943033970 961 dbSNP
rs1405094952 969 dbSNP
rs567872363 978 dbSNP
rs1170668014 980 dbSNP
rs535555225 981 dbSNP
rs925856757 1009 dbSNP
rs1373906944 1023 dbSNP
rs1169974258 1024 dbSNP
rs1244992687 1029 dbSNP
rs934566983 1029 dbSNP
rs756731525 1037 dbSNP
rs1357015748 1041 dbSNP
rs1461205924 1046 dbSNP
rs979537189 1050 dbSNP
rs183774901 1059 dbSNP
rs1053464003 1061 dbSNP
rs778462403 1068 dbSNP
rs956855036 1073 dbSNP
rs895609583 1074 dbSNP
rs1452728271 1077 dbSNP
rs1382024264 1085 dbSNP
rs1287603445 1086 dbSNP
rs79301493 1088 dbSNP
rs7103189 1102 dbSNP
rs1230237649 1108 dbSNP
rs1396896282 1116 dbSNP
rs1167581062 1117 dbSNP
rs1427999364 1118 dbSNP
rs539855805 1118 dbSNP
rs1164368519 1120 dbSNP
rs905318241 1136 dbSNP
rs771641530 1139 dbSNP
rs1002188091 1143 dbSNP
rs1299263608 1147 dbSNP
rs1311896556 1152 dbSNP
rs557844573 1153 dbSNP
rs576697131 1156 dbSNP
rs537707201 1165 dbSNP
rs556008227 1167 dbSNP
rs927401595 1169 dbSNP
rs1194882642 1175 dbSNP
rs1481909729 1177 dbSNP
rs1016301815 1179 dbSNP
rs1482252363 1180 dbSNP
rs1358071175 1183 dbSNP
rs1282388722 1189 dbSNP
rs1205119975 1190 dbSNP
rs1241039429 1191 dbSNP
rs1336143828 1196 dbSNP
rs1327863612 1201 dbSNP
rs574240268 1208 dbSNP
rs775292085 1210 dbSNP
rs138176450 1212 dbSNP
rs886666845 1225 dbSNP
rs1424141081 1231 dbSNP
rs117067264 1232 dbSNP
rs12272092 1234 dbSNP
rs902010834 1235 dbSNP
rs1180548574 1242 dbSNP
rs1363585730 1242 dbSNP
rs954868498 1244 dbSNP
rs987636237 1245 dbSNP
rs1481612956 1246 dbSNP
rs149549937 1248 dbSNP
rs1222724593 1259 dbSNP
rs1427507769 1260 dbSNP
rs563891302 1266 dbSNP
rs978492085 1268 dbSNP
rs903625248 1269 dbSNP
rs925618070 1278 dbSNP
rs1000513771 1286 dbSNP
rs771882919 1286 dbSNP
rs1347126317 1287 dbSNP
rs1200928035 1292 dbSNP
rs1404510956 1296 dbSNP
rs1348216290 1299 dbSNP
rs1371147665 1303 dbSNP
rs1401350749 1304 dbSNP
rs934322282 1308 dbSNP
rs1157552822 1311 dbSNP
rs1411578886 1315 dbSNP
rs1291897531 1316 dbSNP
rs1430361132 1320 dbSNP
rs1199717122 1326 dbSNP
rs1366972705 1327 dbSNP
rs377723984 1332 dbSNP
rs988710337 1348 dbSNP
rs917189808 1355 dbSNP
rs1194770817 1358 dbSNP
rs879446696 1363 dbSNP
rs1267468722 1369 dbSNP
rs531509897 1372 dbSNP
rs1263462318 1379 dbSNP
rs1223134171 1383 dbSNP
rs576760804 1392 dbSNP
rs549616469 1397 dbSNP
rs746813928 1398 dbSNP
rs371399335 1401 dbSNP
rs981040783 1413 dbSNP
rs1275786148 1414 dbSNP
rs927380597 1420 dbSNP
rs561644106 1422 dbSNP
rs1407306437 1423 dbSNP
rs905265807 1433 dbSNP
rs1176244449 1436 dbSNP
rs930738484 1437 dbSNP
rs1219970656 1445 dbSNP
rs1422681887 1448 dbSNP
rs1244496675 1454 dbSNP
rs763671541 1457 dbSNP
rs529094280 1460 dbSNP
rs1246820501 1461 dbSNP
rs1186608259 1463 dbSNP
rs1487849071 1468 dbSNP
rs899128393 1472 dbSNP
rs907872701 1477 dbSNP
rs1268946265 1482 dbSNP
rs1447268944 1485 dbSNP
rs751304579 1489 dbSNP
rs940712893 1495 dbSNP
rs993915108 1497 dbSNP
rs1167802012 1503 dbSNP
rs1390522775 1506 dbSNP
rs1341562768 1507 dbSNP
rs187101541 1524 dbSNP
rs1248257919 1529 dbSNP
rs1384258472 1532 dbSNP
rs890724679 1534 dbSNP
rs1009004769 1538 dbSNP
rs1017696966 1539 dbSNP
rs7943111 1542 dbSNP
rs978441484 1544 dbSNP
rs1437200578 1549 dbSNP
rs932120203 1551 dbSNP
rs1410123720 1553 dbSNP
rs1295518502 1555 dbSNP
rs1363367455 1561 dbSNP
rs1033182766 1562 dbSNP
rs1051051971 1569 dbSNP
rs190404289 1586 dbSNP
rs1445903390 1594 dbSNP
rs1385835570 1598 dbSNP
rs761547787 1599 dbSNP
rs988923903 1603 dbSNP
rs1234340975 1610 dbSNP
rs903574162 1614 dbSNP
rs35932333 1620 dbSNP
rs917156438 1623 dbSNP
rs1298857724 1625 dbSNP
rs1272739032 1627 dbSNP
rs1248327083 1633 dbSNP
rs971332710 1637 dbSNP
rs1360216432 1643 dbSNP
rs1344730620 1647 dbSNP
rs1312670799 1650 dbSNP
rs980029001 1662 dbSNP
rs1001030027 1674 dbSNP
rs1375997010 1677 dbSNP
rs1280432937 1682 dbSNP
rs113290707 1709 dbSNP
rs1369620618 1712 dbSNP
rs776676229 1722 dbSNP
rs1426047308 1729 dbSNP
rs551770348 1741 dbSNP
rs761904352 1742 dbSNP
rs1274501564 1744 dbSNP
rs920712259 1762 dbSNP
rs1177630277 1773 dbSNP
rs1463299191 1774 dbSNP
rs1187516552 1775 dbSNP
rs1013238082 1777 dbSNP
rs929303716 1778 dbSNP
rs1248439057 1779 dbSNP
rs570026323 1780 dbSNP
rs754713080 1786 dbSNP
rs1224955736 1795 dbSNP
rs537746202 1798 dbSNP
rs1264881517 1804 dbSNP
rs1220005231 1807 dbSNP
rs765390859 1810 dbSNP
rs1180050914 1811 dbSNP
rs890473070 1812 dbSNP
rs1009078174 1815 dbSNP
rs1228214169 1816 dbSNP
rs1002017073 1820 dbSNP
rs1039264102 1838 dbSNP
rs1286098236 1841 dbSNP
rs1027244286 1844 dbSNP
rs1406337217 1844 dbSNP
rs952127056 1849 dbSNP
rs1455922403 1850 dbSNP
rs1346946477 1854 dbSNP
rs1159705663 1859 dbSNP
rs985279747 1860 dbSNP
rs1405873283 1861 dbSNP
rs1167093530 1863 dbSNP
rs1386508940 1864 dbSNP
rs907994410 1865 dbSNP
rs900644627 1867 dbSNP
rs962027188 1872 dbSNP
rs1456962802 1874 dbSNP
rs1189602763 1878 dbSNP
rs1321416674 1882 dbSNP
rs1000353449 1885 dbSNP
rs976105325 1892 dbSNP
rs1032761293 1894 dbSNP
rs556145058 1895 dbSNP
rs1224504745 1900 dbSNP
rs1009892536 1904 dbSNP
rs1230495977 1915 dbSNP
rs1294647959 1927 dbSNP
rs1024362291 1929 dbSNP
rs1326401063 1930 dbSNP
rs971072733 1931 dbSNP
rs574380929 1934 dbSNP
rs927204351 1936 dbSNP
rs1363399422 1947 dbSNP
rs1052605924 1949 dbSNP
rs1321163760 1949 dbSNP
rs879642634 1949 dbSNP
rs1178402207 1950 dbSNP
rs555829085 1951 dbSNP
rs974335276 1952 dbSNP
rs796352468 1955 dbSNP
rs553260699 1956 dbSNP
rs920675812 1961 dbSNP
rs929351742 1964 dbSNP
rs368237356 1978 dbSNP
rs1189959150 1980 dbSNP
rs1204768078 1984 dbSNP
rs1483112150 1991 dbSNP
rs545537106 1995 dbSNP
rs911853462 2008 dbSNP
rs1002536226 2012 dbSNP
rs1308760976 2015 dbSNP
rs1026944810 2020 dbSNP
rs574478062 2020 dbSNP
rs944716507 2021 dbSNP
rs1039252709 2023 dbSNP
rs575779784 2025 dbSNP
rs1338596541 2034 dbSNP
rs1396428105 2038 dbSNP
rs1160194582 2041 dbSNP
rs1000352588 2042 dbSNP
rs1301333226 2045 dbSNP
rs1055062740 2050 dbSNP
rs564111611 2054 dbSNP
rs1360087065 2068 dbSNP
rs1014998963 2070 dbSNP
rs1387679824 2073 dbSNP
rs962139597 2077 dbSNP
rs1442226516 2078 dbSNP
rs541062162 2079 dbSNP
rs976052699 2082 dbSNP
rs1286955243 2086 dbSNP
rs1348092641 2095 dbSNP
rs1010378396 2097 dbSNP
rs1024063985 2098 dbSNP
rs1317112070 2107 dbSNP
rs539748777 2130 dbSNP
rs766538539 2131 dbSNP
rs1310401893 2133 dbSNP
rs1034266327 2138 dbSNP
rs1371457708 2139 dbSNP
rs559207594 2149 dbSNP
rs1442741487 2151 dbSNP
rs1367478089 2154 dbSNP
rs1212937276 2157 dbSNP
rs925590537 2160 dbSNP
rs1367231208 2162 dbSNP
rs962646916 2163 dbSNP
rs561681931 2165 dbSNP
rs1482678245 2169 dbSNP
rs1252136810 2174 dbSNP
rs182285461 2180 dbSNP
rs1481796359 2185 dbSNP
rs1195432115 2186 dbSNP
rs1025873217 2187 dbSNP
rs1052574551 2188 dbSNP
rs1355631463 2191 dbSNP
rs751901825 2198 dbSNP
rs983907686 2199 dbSNP
rs949149540 2211 dbSNP
rs1287990423 2216 dbSNP
rs1046009406 2219 dbSNP
rs1426348810 2223 dbSNP
rs1436900832 2224 dbSNP
rs1347471632 2226 dbSNP
rs1324358683 2240 dbSNP
rs912010508 2250 dbSNP
rs755277442 2251 dbSNP
rs974737803 2255 dbSNP
rs1458121857 2270 dbSNP
rs1411625452 2273 dbSNP
rs1181016571 2280 dbSNP
rs1471446031 2302 dbSNP
rs1248084560 2307 dbSNP
rs1199021868 2314 dbSNP
rs1048778043 2315 dbSNP
rs1265221796 2324 dbSNP
rs922175408 2330 dbSNP
rs936221968 2331 dbSNP
rs1054732289 2333 dbSNP
rs113537782 2343 dbSNP
rs1004430927 2351 dbSNP
rs1226341664 2354 dbSNP
rs1325993255 2355 dbSNP
rs946246828 2366 dbSNP
rs1015450395 2375 dbSNP
rs563111547 2378 dbSNP
rs1320876630 2382 dbSNP
rs1436381522 2384 dbSNP
rs559250409 2389 dbSNP
rs906993013 2398 dbSNP
rs1273841847 2404 dbSNP
rs1001185924 2407 dbSNP
rs1030460244 2420 dbSNP
rs1172761693 2435 dbSNP
rs953494390 2439 dbSNP
rs1190436536 2445 dbSNP
rs1465341223 2447 dbSNP
rs1033985974 2449 dbSNP
rs898179321 2450 dbSNP
rs17652258 2455 dbSNP
rs551520488 2460 dbSNP
rs958331356 2461 dbSNP
rs116603485 2468 dbSNP
rs1342976608 2477 dbSNP
rs1205756966 2480 dbSNP
rs951282107 2481 dbSNP
rs750364919 2482 dbSNP
rs1198427266 2487 dbSNP
rs1319099609 2491 dbSNP
rs186795956 2497 dbSNP
rs1454946165 2499 dbSNP
rs77965059 2506 dbSNP
rs1455736290 2518 dbSNP
rs1413489771 2521 dbSNP
rs1422614019 2525 dbSNP
rs974812987 2526 dbSNP
rs981821021 2528 dbSNP
rs921913138 2539 dbSNP
rs549385796 2544 dbSNP
rs937657281 2545 dbSNP
rs1186548351 2556 dbSNP
rs144164783 2561 dbSNP
rs1237775988 2565 dbSNP
rs193210922 2574 dbSNP
rs1384506132 2578 dbSNP
rs1440967979 2582 dbSNP
rs1322288767 2584 dbSNP
rs564642038 2595 dbSNP
rs1341496838 2602 dbSNP
rs909104210 2603 dbSNP
rs1036827665 2622 dbSNP
rs1230470966 2623 dbSNP
rs778340005 2626 dbSNP
rs1442605094 2627 dbSNP
rs1284042542 2642 dbSNP
rs901004402 2649 dbSNP
rs1295191884 2651 dbSNP
rs16919393 2654 dbSNP
rs907380987 2663 dbSNP
rs1429860509 2667 dbSNP
rs1229091307 2676 dbSNP
rs1166653087 2685 dbSNP
rs937049296 2691 dbSNP
rs1055553023 2702 dbSNP
rs1030406560 2708 dbSNP
rs898119111 2712 dbSNP
rs1181119368 2713 dbSNP
rs1471672217 2724 dbSNP
rs1252932489 2729 dbSNP
rs1007948171 2738 dbSNP
rs1482778123 2742 dbSNP
rs1354351133 2747 dbSNP
rs995217239 2762 dbSNP
rs1223861669 2775 dbSNP
rs1032354823 2793 dbSNP
rs539218759 2797 dbSNP
rs139952347 2805 dbSNP
rs1227005069 2807 dbSNP
rs1352673246 2829 dbSNP
rs1289854590 2830 dbSNP
rs1409990689 2838 dbSNP
rs887053425 2839 dbSNP
rs779598481 2840 dbSNP
rs1296006549 2842 dbSNP
rs535442360 2846 dbSNP
rs185609292 2848 dbSNP
rs1350444511 2850 dbSNP
rs141831199 2852 dbSNP
rs763078428 2854 dbSNP
rs188557117 2858 dbSNP
rs146251265 2859 dbSNP
rs1472426798 2862 dbSNP
rs1195964782 2867 dbSNP
rs1367291047 2871 dbSNP
rs1029044705 2874 dbSNP
rs1488828728 2881 dbSNP
rs1457836843 2887 dbSNP
rs1219943891 2892 dbSNP
rs982270511 2893 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9440.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gggaguuuuuccuUCGUGAAa 5'
                       ||||||| 
Target 5' ------uuuauuuAGCACUUu 3'
 		1 - 15
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000251871.3 | 3UTR | UUUAUUUAGCACUUUCAAACUUUUCACUUUAUAAAUGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19350 CNS germ cell tumors -0.533 3.7e-2 -0.448 7.2e-2 12 Click to see details
GSE27834 Pluripotent stem cells -0.426 5.0e-2 -0.379 7.4e-2 16 Click to see details
GSE28260 Renal cortex and medulla 0.467 5.4e-2 0.516 3.6e-2 13 Click to see details
GSE38226 Liver fibrosis -0.326 7.5e-2 -0.309 8.6e-2 21 Click to see details
GSE21687 Ependynoma primary tumors -0.181 7.6e-2 -0.064 3.1e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells 0.295 8.1e-2 0.240 1.3e-1 24 Click to see details
GSE28544 Breast cancer -0.281 9.2e-2 -0.461 1.2e-2 24 Click to see details
GSE21849 B cell lymphoma -0.23 1.2e-1 0.079 3.4e-1 29 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.223 1.4e-1 0.068 3.7e-1 25 Click to see details
GSE17498 Multiple myeloma 0.151 1.8e-1 0.045 3.9e-1 40 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.192 1.8e-1 -0.067 3.8e-1 25 Click to see details
GSE14794 Lymphoblastoid cells 0.056 3.0e-1 0.076 2.4e-1 90 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.111 4.0e-1 0.042 4.6e-1 8 Click to see details
GSE42095 Differentiated embryonic stem cells 0.044 4.2e-1 -0.027 4.5e-1 23 Click to see details
GSE17306 Multiple myeloma -0.026 4.3e-1 0.009 4.8e-1 49 Click to see details
GSE32688 Pancreatic cancer 0.023 4.5e-1 0.098 3.0e-1 32 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.028 4.5e-1 -0.150 2.6e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
-0.028 4.5e-1 -0.150 2.6e-1 20 Click to see details
-0.028 4.5e-1 -0.150 2.6e-1 20 Click to see details
-0.028 4.5e-1 -0.150 2.6e-1 20 Click to see details
-0.028 4.5e-1 -0.150 2.6e-1 20 Click to see details
423 hsa-miR-520e Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006513 CD46 CD46 molecule 4 1
MIRT007338 PFKP phosphofructokinase, platelet 5 9
MIRT052929 MAP3K14 mitogen-activated protein kinase kinase kinase 14 3 1
MIRT052966 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 3 1
MIRT057396 TNKS2 tankyrase 2 2 2
MIRT061195 MED17 mediator complex subunit 17 2 2
MIRT061366 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT063068 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT064717 CCND2 cyclin D2 2 2
MIRT065871 GDF11 growth differentiation factor 11 2 2
MIRT066869 TMEM19 transmembrane protein 19 2 2
MIRT067243 FOXJ2 forkhead box J2 2 2
MIRT070853 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071388 CMPK1 cytidine/uridine monophosphate kinase 1 2 6
MIRT075787 KIAA0513 KIAA0513 2 6
MIRT077844 MINK1 misshapen like kinase 1 2 2
MIRT078824 UNK unkempt family zinc finger 2 2
MIRT079424 FOXK2 forkhead box K2 2 4
MIRT080190 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT083973 RAB22A RAB22A, member RAS oncogene family 2 4
MIRT084955 BACH1 BTB domain and CNC homolog 1 2 2
MIRT093815 KLF3 Kruppel like factor 3 2 2
MIRT093953 SLAIN2 SLAIN motif family member 2 2 2
MIRT108662 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT112100 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT122376 RGMB repulsive guidance molecule family member b 2 4
MIRT124139 GINS4 GINS complex subunit 4 2 4
MIRT130113 TXNIP thioredoxin interacting protein 2 8
MIRT138705 MPP5 membrane palmitoylated protein 5 2 2
MIRT147298 KPNA2 karyopherin subunit alpha 2 2 10
MIRT155916 SIK1 salt inducible kinase 1 2 2
MIRT165910 CREBRF CREB3 regulatory factor 2 2
MIRT173700 PRPF4 pre-mRNA processing factor 4 2 2
MIRT178673 FAM102B family with sequence similarity 102 member B 2 2
MIRT187262 DAZAP2 DAZ associated protein 2 2 10
MIRT199118 ZNF532 zinc finger protein 532 2 2
MIRT199293 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT200934 ZNF264 zinc finger protein 264 2 6
MIRT201032 ZNF805 zinc finger protein 805 2 2
MIRT213215 REST RE1 silencing transcription factor 2 6
MIRT216435 SERF1A small EDRK-rich factor 1A 2 2
MIRT216460 SERF1B small EDRK-rich factor 1B 2 2
MIRT242210 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT242366 IGF1R insulin like growth factor 1 receptor 2 2
MIRT242511 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 2
MIRT243435 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT244600 HOOK3 hook microtubule tethering protein 3 2 2
MIRT281001 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT302451 CLIP4 CAP-Gly domain containing linker protein family member 4 2 2
MIRT321784 FZD6 frizzled class receptor 6 2 8
MIRT322534 HMBOX1 homeobox containing 1 2 2
MIRT325522 PTPDC1 protein tyrosine phosphatase domain containing 1 2 2
MIRT356941 FEM1C fem-1 homolog C 2 8
MIRT383608 POU2F1 POU class 2 homeobox 1 2 2
MIRT441407 FAM9C family with sequence similarity 9 member C 2 2
MIRT442447 FGF7 fibroblast growth factor 7 2 6
MIRT443074 ABLIM1 actin binding LIM protein 1 2 2
MIRT444420 EMC1 ER membrane protein complex subunit 1 2 2
MIRT446616 HIP1 huntingtin interacting protein 1 2 4
MIRT446807 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT448351 TSR1 TSR1, ribosome maturation factor 2 6
MIRT448743 ITGA2 integrin subunit alpha 2 2 2
MIRT449158 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT449251 MICA MHC class I polypeptide-related sequence A 2 2
MIRT450842 IFFO1 intermediate filament family orphan 1 2 2
MIRT450927 CADM2 cell adhesion molecule 2 2 2
MIRT450963 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT461251 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 6
MIRT463601 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT467913 SLC22A23 solute carrier family 22 member 23 2 2
MIRT471996 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT473611 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT474724 KIF13A kinesin family member 13A 2 6
MIRT476988 FAM73B mitoguardin 2 2 2
MIRT477098 FAM160B1 family with sequence similarity 160 member B1 2 6
MIRT477269 ERGIC2 ERGIC and golgi 2 2 2
MIRT478732 CSNK1A1 casein kinase 1 alpha 1 2 6
MIRT479996 CAPRIN2 caprin family member 2 2 4
MIRT480660 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480836 BLCAP bladder cancer associated protein 2 10
MIRT481755 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT484830 ZNFX1 zinc finger NFX1-type containing 1 2 2
MIRT484929 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485347 MYO1D myosin ID 2 2
MIRT485831 ARID4B AT-rich interaction domain 4B 2 4
MIRT486013 LPAR2 lysophosphatidic acid receptor 2 2 2
MIRT493131 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT494082 DUSP2 dual specificity phosphatase 2 2 4
MIRT496048 MORC1 MORC family CW-type zinc finger 1 2 2
MIRT497456 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT498047 SNX5 sorting nexin 5 2 6
MIRT500881 SUCO SUN domain containing ossification factor 2 4
MIRT501398 RBBP6 RB binding protein 6, ubiquitin ligase 2 8
MIRT503790 ZNF12 zinc finger protein 12 2 6
MIRT504083 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT504278 PARP1 poly(ADP-ribose) polymerase 1 2 6
MIRT505169 YOD1 YOD1 deubiquitinase 2 4
MIRT505212 UBN2 ubinuclein 2 2 8
MIRT505985 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT506266 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT506975 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT507216 FZD9 frizzled class receptor 9 2 6
MIRT507422 ELK4 ELK4, ETS transcription factor 2 4
MIRT508560 CEP72 centrosomal protein 72 2 4
MIRT508729 ZNF682 zinc finger protein 682 2 4
MIRT508820 GPR155 G protein-coupled receptor 155 2 2
MIRT509114 BMP8B bone morphogenetic protein 8b 2 6
MIRT509421 MCM7 minichromosome maintenance complex component 7 2 6
MIRT509729 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT510013 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT510210 ZNF317 zinc finger protein 317 2 4
MIRT511304 KIAA1551 KIAA1551 2 2
MIRT511403 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT511540 HMGB1 high mobility group box 1 2 6
MIRT512023 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT512967 PPP1R14C protein phosphatase 1 regulatory inhibitor subunit 14C 2 4
MIRT513811 NFIB nuclear factor I B 2 2
MIRT514121 SERF2 small EDRK-rich factor 2 2 2
MIRT514304 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514466 FANCA Fanconi anemia complementation group A 2 2
MIRT515189 CRCP CGRP receptor component 2 2
MIRT515559 TMEM134 transmembrane protein 134 2 2
MIRT515916 MFAP2 microfibril associated protein 2 2 4
MIRT516044 MED18 mediator complex subunit 18 2 2
MIRT516355 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516543 MIXL1 Mix paired-like homeobox 2 2
MIRT516783 PTRF caveolae associated protein 1 2 4
MIRT517004 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT517171 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517244 PRIM1 DNA primase subunit 1 2 4
MIRT518301 ZNF514 zinc finger protein 514 2 4
MIRT518452 KIF6 kinesin family member 6 2 2
MIRT518683 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT518788 MED16 mediator complex subunit 16 2 4
MIRT518847 NEK8 NIMA related kinase 8 2 2
MIRT518956 GRK7 G protein-coupled receptor kinase 7 2 2
MIRT519256 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT519416 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519532 TMEM38A transmembrane protein 38A 2 2
MIRT520066 YIPF4 Yip1 domain family member 4 2 2
MIRT520140 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT520294 UBXN2A UBX domain protein 2A 2 2
MIRT520557 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT520818 TAOK1 TAO kinase 1 2 2
MIRT520994 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521224 SBNO1 strawberry notch homolog 1 2 2
MIRT521533 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522156 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522206 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT522517 MFN1 mitofusin 1 2 2
MIRT522954 IPO9 importin 9 2 2
MIRT523067 HYPK huntingtin interacting protein K 2 2
MIRT523424 GPR157 G protein-coupled receptor 157 2 4
MIRT523555 GIGYF1 GRB10 interacting GYF protein 1 2 6
MIRT523638 FOXK1 forkhead box K1 2 4
MIRT524236 DCTN6 dynactin subunit 6 2 2
MIRT524279 CYCS cytochrome c, somatic 2 2
MIRT524378 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524441 CNKSR3 CNKSR family member 3 2 2
MIRT524758 BCL2L2 BCL2 like 2 2 2
MIRT524967 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT525651 NHSL2 NHS like 2 2 2
MIRT525687 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526623 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT527536 DLGAP5 DLG associated protein 5 2 4
MIRT529523 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT529987 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT530134 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 2 2
MIRT530575 ABHD15 abhydrolase domain containing 15 2 2
MIRT530973 EXO5 exonuclease 5 2 4
MIRT531464 TNFRSF10B TNF receptor superfamily member 10b 2 4
MIRT531763 TXK TXK tyrosine kinase 2 4
MIRT532037 FHDC1 FH2 domain containing 1 2 2
MIRT532932 ZNF385A zinc finger protein 385A 2 2
MIRT534519 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT534615 RNASEH1 ribonuclease H1 2 4
MIRT534773 RASGEF1A RasGEF domain family member 1A 2 2
MIRT535257 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 4
MIRT535389 PER1 period circadian clock 1 2 2
MIRT536024 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT536112 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT536172 MAP1B microtubule associated protein 1B 2 3
MIRT536295 LIMA1 LIM domain and actin binding 1 2 2
MIRT536357 LEFTY1 left-right determination factor 1 2 2
MIRT536425 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT536548 KCNJ8 potassium voltage-gated channel subfamily J member 8 2 2
MIRT536616 IRF2 interferon regulatory factor 2 2 2
MIRT536630 INO80D INO80 complex subunit D 2 2
MIRT536868 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 2 2
MIRT536954 HAS3 hyaluronan synthase 3 2 2
MIRT536981 HABP4 hyaluronan binding protein 4 2 4
MIRT537247 GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 2 2
MIRT537434 FBXL7 F-box and leucine rich repeat protein 7 2 2
MIRT537550 ETNK1 ethanolamine kinase 1 2 2
MIRT537745 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537960 DPYSL2 dihydropyrimidinase like 2 2 2
MIRT538003 DPP8 dipeptidyl peptidase 8 2 2
MIRT538258 CUL3 cullin 3 2 4
MIRT538513 CLCN3 chloride voltage-gated channel 3 2 2
MIRT538583 CECR2 CECR2, histone acetyl-lysine reader 2 2
MIRT538647 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT538860 BTG1 BTG anti-proliferation factor 1 2 2
MIRT538911 BRI3BP BRI3 binding protein 2 2
MIRT539011 AVL9 AVL9 cell migration associated 2 2
MIRT539058 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 4
MIRT539102 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT539437 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT540262 FAM89A family with sequence similarity 89 member A 2 2
MIRT540376 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT541293 GLO1 glyoxalase I 2 2
MIRT542129 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT542255 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT546546 SATB2 SATB homeobox 2 2 2
MIRT547480 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547639 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT547880 HSPA13 heat shock protein family A (Hsp70) member 13 2 2
MIRT548567 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 2 2
MIRT550865 SNAP47 synaptosome associated protein 47 2 4
MIRT552161 DAD1 defender against cell death 1 2 2
MIRT552191 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT553584 TMEM100 transmembrane protein 100 2 2
MIRT553680 TFAP4 transcription factor AP-4 2 4
MIRT554438 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554496 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT554758 RHOC ras homolog family member C 2 2
MIRT555452 POLR3A RNA polymerase III subunit A 2 2
MIRT556536 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT557069 HOXB3 homeobox B3 2 2
MIRT557649 GATA6 GATA binding protein 6 2 2
MIRT560236 KLHL21 kelch like family member 21 2 4
MIRT561335 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT566274 PRRG4 proline rich and Gla domain 4 2 2
MIRT567080 KBTBD2 kelch repeat and BTB domain containing 2 2 2
MIRT567939 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT567980 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT568167 CCDC6 coiled-coil domain containing 6 2 2
MIRT571711 RPL17-C18orf32 RPL17-C18orf32 readthrough 2 2
MIRT571762 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT572197 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT572664 AGMAT agmatinase 2 4
MIRT573696 RBM12B RNA binding motif protein 12B 2 2
MIRT574574 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT574731 HAUS8 HAUS augmin like complex subunit 8 2 2
MIRT575713 Map1b microtubule-associated protein 1B 2 3
MIRT608736 MYH9 myosin heavy chain 9 2 2
MIRT612599 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614251 WDR53 WD repeat domain 53 2 4
MIRT615164 SPIB Spi-B transcription factor 2 2
MIRT616160 TCEB1 elongin C 2 2
MIRT616799 FEM1A fem-1 homolog A 2 2
MIRT617866 ESR1 estrogen receptor 1 2 2
MIRT619829 POLM DNA polymerase mu 2 4
MIRT620966 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT625853 SLC35C2 solute carrier family 35 member C2 2 2
MIRT626209 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626918 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT633110 CBX5 chromobox 5 2 2
MIRT634086 APOH apolipoprotein H 2 2
MIRT634943 GTF2H2C GTF2H2 family member C 2 4
MIRT640022 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT641694 SPCS1 signal peptidase complex subunit 1 2 2
MIRT645203 POLR3F RNA polymerase III subunit F 2 2
MIRT656319 MELK maternal embryonic leucine zipper kinase 2 2
MIRT659545 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT662395 ICA1L islet cell autoantigen 1 like 2 4
MIRT663613 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT663940 ZNF554 zinc finger protein 554 2 2
MIRT664216 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664382 CYB5A cytochrome b5 type A 2 2
MIRT673122 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT677143 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT677249 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT678736 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679721 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT680362 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680689 ZNF785 zinc finger protein 785 2 2
MIRT680767 WDR73 WD repeat domain 73 2 2
MIRT681399 RMND1 required for meiotic nuclear division 1 homolog 2 2
MIRT681693 ABI2 abl interactor 2 2 2
MIRT681829 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT682320 RAB42 RAB42, member RAS oncogene family 2 2
MIRT683318 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683388 ESR2 estrogen receptor 2 2 2
MIRT683492 ZNF7 zinc finger protein 7 2 2
MIRT683524 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683875 OCIAD1 OCIA domain containing 1 2 2
MIRT683948 MYLK3 myosin light chain kinase 3 2 2
MIRT683977 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT684080 TLR7 toll like receptor 7 2 2
MIRT684133 CEP104 centrosomal protein 104 2 2
MIRT684197 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT684358 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT684492 GPR137B G protein-coupled receptor 137B 2 2
MIRT684574 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684617 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684648 PDE4C phosphodiesterase 4C 2 2
MIRT684713 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684742 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684787 MYO1F myosin IF 2 2
MIRT684919 CD28 CD28 molecule 2 2
MIRT685195 DCTN5 dynactin subunit 5 2 2
MIRT685248 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685316 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685351 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685519 MSH3 mutS homolog 3 2 2
MIRT685578 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685635 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685660 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685709 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685742 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685783 ZNF426 zinc finger protein 426 2 2
MIRT685883 RTN2 reticulon 2 2 2
MIRT685955 PTGIS prostaglandin I2 synthase 2 2
MIRT686106 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686156 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686283 WWC1 WW and C2 domain containing 1 2 2
MIRT686321 VPS53 VPS53, GARP complex subunit 2 2
MIRT686362 USP15 ubiquitin specific peptidase 15 2 2
MIRT686390 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686444 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686491 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686527 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686582 TMOD3 tropomodulin 3 2 2
MIRT686693 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686827 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686880 SLC1A5 solute carrier family 1 member 5 2 2
MIRT686914 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT686980 SERINC1 serine incorporator 1 2 2
MIRT687044 RNF115 ring finger protein 115 2 2
MIRT687079 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687254 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687596 MANEAL mannosidase endo-alpha like 2 2
MIRT687650 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687858 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687983 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688123 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688217 FKBP14 FK506 binding protein 14 2 2
MIRT688275 FAM213A family with sequence similarity 213 member A 2 2
MIRT688487 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688506 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688830 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689174 ZNF665 zinc finger protein 665 2 2
MIRT689799 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689844 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690739 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690984 ZNF578 zinc finger protein 578 2 2
MIRT691076 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691333 KIAA1841 KIAA1841 2 2
MIRT691497 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691578 CCDC125 coiled-coil domain containing 125 2 2
MIRT691614 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692074 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692111 CXorf38 chromosome X open reading frame 38 2 4
MIRT692212 NOL9 nucleolar protein 9 2 2
MIRT692320 RFK riboflavin kinase 2 2
MIRT692382 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692443 METTL8 methyltransferase like 8 2 2
MIRT692478 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692546 PARD3 par-3 family cell polarity regulator 2 2
MIRT692607 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692788 SYNPO2L synaptopodin 2 like 2 2
MIRT692819 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692881 RBM41 RNA binding motif protein 41 2 2
MIRT692991 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693140 THEM4 thioesterase superfamily member 4 2 2
MIRT693353 RNF34 ring finger protein 34 2 2
MIRT694113 ZNF446 zinc finger protein 446 2 2
MIRT694197 ZNF347 zinc finger protein 347 2 2
MIRT694663 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694817 STX4 syntaxin 4 2 2
MIRT694939 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695183 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695309 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT695663 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695836 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695928 ZNF174 zinc finger protein 174 2 2
MIRT695975 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696186 GNB5 G protein subunit beta 5 2 2
MIRT696447 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696863 UBOX5 U-box domain containing 5 2 2
MIRT696910 C14orf105 coiled-coil domain containing 198 2 2
MIRT697249 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697394 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697988 TSPAN6 tetraspanin 6 2 2
MIRT698334 TMEM127 transmembrane protein 127 2 2
MIRT699274 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699321 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699637 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699699 SF3B3 splicing factor 3b subunit 3 2 2
MIRT700048 RPL14 ribosomal protein L14 2 2
MIRT700106 RNF19B ring finger protein 19B 2 2
MIRT701114 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701298 NUDT3 nudix hydrolase 3 2 2
MIRT701579 MYPN myopalladin 2 2
MIRT702529 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT703095 GPRIN3 GPRIN family member 3 2 2
MIRT704114 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704149 DNAL1 dynein axonemal light chain 1 2 2
MIRT704201 LDHD lactate dehydrogenase D 2 2
MIRT704466 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704767 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705088 C4orf29 abhydrolase domain containing 18 2 2
MIRT705353 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706109 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706280 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706315 CCDC30 coiled-coil domain containing 30 2 2
MIRT706355 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706407 HAS2 hyaluronan synthase 2 2 2
MIRT706438 LIAS lipoic acid synthetase 2 2
MIRT706518 MTMR9 myotubularin related protein 9 2 2
MIRT707592 PCNXL2 pecanex homolog 2 2 2
MIRT708374 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708452 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT709076 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709541 ZBED1 zinc finger BED-type containing 1 2 2
MIRT709623 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT714310 ZNF454 zinc finger protein 454 2 2
MIRT715601 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT716544 GOLGA2 golgin A2 2 2
MIRT717807 FAM114A1 family with sequence similarity 114 member A1 2 2
MIRT719076 ACOX1 acyl-CoA oxidase 1 2 2
MIRT732364 ZBTB7A zinc finger and BTB domain containing 7A 3 1
MIRT734579 MTDH metadherin 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-520e Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-520e Cisplatin approved 84093 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-520e Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-520e Androstenedione+Anastrozole resistant cell line (MCF-7)

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