miRTarBase - #MIRT061215


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pre-miRNA Information
pre-miRNA hsa-mir-5696   
Genomic Coordinates chr2: 101309450 - 101309534
Description Homo sapiens miR-5696 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-5696
Sequence 4| CUCAUUUAAGUAGUCUGAUGCC |25
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs571745487 3 dbSNP
rs1187652258 4 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MED17   
Synonyms CRSP6, CRSP77, DRIP80, SRB4, TRAP80
Description mediator complex subunit 17
Transcript NM_004268   
Expression
Putative miRNA Targets on MED17
3'UTR of MED17
(miRNA target sites are highlighted)		 
>MED17|NM_004268|3'UTR
   1 TTTTTTCCAGATGTTTCCTAAAGAAGTTTCCAGAAACTTTGACTTGAAATGTTTGCAGATCAACTATAAGCACAAAGAAG
  81 AGATAACTTCCAAAAGAGTGCTGTTTTTAAAAATAATAATTAGGAAATGTTTATTTAGCACTTTCAAACTTTTCACTTTA
 161 TAAATGACAAGTGCTTTGAAATGCAGAAGTTTATGTACAGTTGTATATACAGTATGACAAGATGTAAAATAATATGTTTT
 241 TCATGCAGTTTAAAATATTACTAACTTAAGGGTTTCTATGTGCTTTTTAAAATATTCCTTCTTTGATGTTGACATCAAAT
 321 AAAGTATGTGGTTTAAAAAAATCTCCAAATACCTTTTTTTCCCCCCAAATACTTTCTAAACTTTTTTTTTTTGAGATGGT
 401 ATCTCACTCTGTAGCCCAGTCTGGAGTGCAGTGGTGTGATCATGGTTCACTGCAGTCTTGACCTCCCAGGCTTAGGTGAT
 481 CCTTCTGTCTCAGCCTTCCGAGTAGCTGGGACCACAGGCATGCACAACCACGCCTGGCTAATTTTTGTATTTTTTATAAA
 561 GACAGGGTTTTTCCATGTTGCCCAGGCTGGTTTCGAACTCGGCTCAAGTGATCTACCTGCCTCTGCCTCCCAAAGTGCTA
 641 GGATTACAGGCGTGAGCCACCATGCCCAGCCTACTCTAAATTATTGATAACCTCTTCCTCCAGTTGTCTCCTTTAAGCTT
 721 TCCTGGGTCTAACCTACATAGGTAATTTAAGAACATCCTCAGAAAGGACAGCTGAAGGCAATAGGAGGCAGATTATCTCT
 801 TTAGGGCGTCCTCAAGTTTTTTTGGTCTGTTCTCCCACTTGATTGACCTCACCAGTTGAGACACCTAGTGTATGGCTCAT
 881 GCCCAGCCTTCCACCTGGGATTCTCCAGCCTCCACCCAGCAGCCCTGGATTGCTTTCTCCAATTAAGGCCTTTCCATCAG
 961 CTCTCTGCTTTTTCAAAGCGAAAAAACTAATGGATTAGTGGGTTATCTTTTCCAAGGAACAGGTTTGCACTTCTTGGAAA
1041 AAGTGCCTAAAGTGTGCCCATTAATATGAGGATAGATTTAGGCTCATAAGCCTTTTGGTAACACTGAAAGTAGTATCATA
1121 TAGGCAAGCTCTCCTTATAAGTAAGGCTTTCAATTTTTAAAACAGACATCCTGCTTTAACAATTTGTAAGATGACTGTGC
1201 AGTAATAAAAGTCCTTTGTATTTCTCCACCGTGTTTTCATTAAAGAAAAATGGAGCTTGTGGGCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccGUA---GUCUGAUGA-AUUUACUc 5'
            |||   ||| ||||| ||||| | 
Target 5' acCATGCCCAGCCTACTCTAAATTAt 3'
 659 - 684 140.00 -7.92
2 
miRNA  3' ccguaGUCUGAUGAAUUUACUc 5'
               |||   :||||::||| 
Target 5' cctccCAG---GCTTAGGTGAt 3'
 462 - 480 122.00 -9.10
3 
miRNA  3' ccguAGUCUGA--UGAAUUUACUc 5'
              ||: |||  :|| ||:||| 
Target 5' ggttTCGAACTCGGCTCAAGTGAt 3'
 589 - 612 116.00 -10.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1199454 84 ClinVar
COSN30162650 8 COSMIC
COSN30489983 18 COSMIC
COSN20077248 39 COSMIC
COSN31511632 47 COSMIC
COSN31601858 53 COSMIC
COSN30124195 72 COSMIC
COSN20077250 81 COSMIC
COSN31558844 83 COSMIC
COSN20081566 96 COSMIC
COSN30140431 96 COSMIC
COSN31548403 148 COSMIC
COSN32062322 393 COSMIC
COSN20363058 405 COSMIC
COSN16104957 979 COSMIC
COSN6612296 1164 COSMIC
COSN19559198 1169 COSMIC
COSN5710979 1427 COSMIC
COSN32134023 1685 COSMIC
COSN29260557 1897 COSMIC
COSN8879207 1972 COSMIC
COSN10094721 2079 COSMIC
COSN10094722 2518 COSMIC
COSN1550394 2553 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758228406 1 dbSNP
rs779963969 1 dbSNP
rs751901725 3 dbSNP
rs1334567148 9 dbSNP
rs918145258 11 dbSNP
rs1252857683 15 dbSNP
rs762055694 19 dbSNP
rs1195847529 21 dbSNP
rs1467164584 21 dbSNP
rs1396117557 23 dbSNP
rs948311149 27 dbSNP
rs767661961 28 dbSNP
rs1166437368 32 dbSNP
rs1421722296 34 dbSNP
rs750516785 36 dbSNP
rs751450680 38 dbSNP
rs756174275 43 dbSNP
rs1325302708 51 dbSNP
rs1167179091 56 dbSNP
rs1460280096 57 dbSNP
rs1479503615 59 dbSNP
rs7935747 62 dbSNP
rs1444046010 64 dbSNP
rs1241404769 67 dbSNP
rs568235455 67 dbSNP
rs920274051 75 dbSNP
rs1378275569 81 dbSNP
rs116795572 84 dbSNP
rs1272741705 93 dbSNP
rs373900829 99 dbSNP
rs1194376204 117 dbSNP
rs539317486 117 dbSNP
rs1166353247 133 dbSNP
rs765445302 134 dbSNP
rs1389971775 148 dbSNP
rs983636107 150 dbSNP
rs190879412 155 dbSNP
rs919049918 157 dbSNP
rs750665289 168 dbSNP
rs1448896767 185 dbSNP
rs1336207765 186 dbSNP
rs1328114626 187 dbSNP
rs773728591 189 dbSNP
rs77132304 191 dbSNP
rs900306213 207 dbSNP
rs1164419139 213 dbSNP
rs545874328 216 dbSNP
rs1386699322 228 dbSNP
rs946641545 231 dbSNP
rs150825608 232 dbSNP
rs904578586 242 dbSNP
rs1180320399 244 dbSNP
rs1331157072 245 dbSNP
rs889019563 254 dbSNP
rs1222750936 261 dbSNP
rs1268000584 264 dbSNP
rs1341197597 266 dbSNP
rs998958512 269 dbSNP
rs1241610884 273 dbSNP
rs1031595002 279 dbSNP
rs758602957 295 dbSNP
rs1276494165 317 dbSNP
rs1236843511 319 dbSNP
rs1332586175 322 dbSNP
rs1303601041 326 dbSNP
rs1404567289 332 dbSNP
rs1300302346 335 dbSNP
rs895819278 335 dbSNP
rs1007403082 337 dbSNP
rs1401313135 339 dbSNP
rs1407398229 342 dbSNP
rs1157314727 343 dbSNP
rs1042973406 353 dbSNP
rs1430418146 354 dbSNP
rs199746704 354 dbSNP
rs904330106 354 dbSNP
rs1023160908 361 dbSNP
rs1217537907 361 dbSNP
rs1447048394 362 dbSNP
rs970306884 363 dbSNP
rs1221993967 366 dbSNP
rs1209136810 369 dbSNP
rs1325668785 376 dbSNP
rs998732574 377 dbSNP
rs1453356317 381 dbSNP
rs553014429 382 dbSNP
rs796148870 382 dbSNP
rs71926524 383 dbSNP
rs1407406068 384 dbSNP
rs1027835038 386 dbSNP
rs1479638576 386 dbSNP
rs950483497 388 dbSNP
rs1187884240 392 dbSNP
rs1170939835 393 dbSNP
rs1383738085 394 dbSNP
rs1457884692 396 dbSNP
rs1241014271 403 dbSNP
rs1164291681 404 dbSNP
rs61904957 405 dbSNP
rs1387932521 424 dbSNP
rs1462281252 427 dbSNP
rs911681852 436 dbSNP
rs377306809 439 dbSNP
rs1202998419 445 dbSNP
rs965692346 446 dbSNP
rs1215375046 455 dbSNP
rs956836196 466 dbSNP
rs974432608 467 dbSNP
rs1013988732 469 dbSNP
rs1450239668 470 dbSNP
rs1383661086 471 dbSNP
rs1336613847 472 dbSNP
rs1364079678 476 dbSNP
rs1402894909 479 dbSNP
rs921825121 486 dbSNP
rs1435361881 489 dbSNP
rs1409757389 496 dbSNP
rs946670235 500 dbSNP
rs1319683177 501 dbSNP
rs1184433508 507 dbSNP
rs1445883294 507 dbSNP
rs1243267868 511 dbSNP
rs1244008696 515 dbSNP
rs1024949129 516 dbSNP
rs1182894781 527 dbSNP
rs969394971 529 dbSNP
rs769259458 532 dbSNP
rs572859027 533 dbSNP
rs1203407262 538 dbSNP
rs1306727243 542 dbSNP
rs1247478526 554 dbSNP
rs1248494763 560 dbSNP
rs1360229547 567 dbSNP
rs1465545179 573 dbSNP
rs923801482 574 dbSNP
rs909473068 577 dbSNP
rs1376084948 578 dbSNP
rs963533319 595 dbSNP
rs375300661 596 dbSNP
rs1353158109 601 dbSNP
rs1167847801 602 dbSNP
rs1426220969 604 dbSNP
rs1423560270 607 dbSNP
rs918985856 609 dbSNP
rs182140842 610 dbSNP
rs1452242118 612 dbSNP
rs1442252095 614 dbSNP
rs1028403410 616 dbSNP
rs1177742637 617 dbSNP
rs562239063 622 dbSNP
rs1225021172 632 dbSNP
rs778826366 632 dbSNP
rs529831704 652 dbSNP
rs557560538 653 dbSNP
rs943042101 658 dbSNP
rs369910365 666 dbSNP
rs995106211 670 dbSNP
rs1042945508 677 dbSNP
rs1308381523 680 dbSNP
rs1223674928 681 dbSNP
rs1028196747 693 dbSNP
rs575924576 696 dbSNP
rs1005493817 704 dbSNP
rs1302124692 708 dbSNP
rs559897275 722 dbSNP
rs1342256026 750 dbSNP
rs1364989055 751 dbSNP
rs1018689967 755 dbSNP
rs1014424014 757 dbSNP
rs527330483 759 dbSNP
rs921607205 775 dbSNP
rs999075544 782 dbSNP
rs1220492239 784 dbSNP
rs979371120 788 dbSNP
rs775043990 799 dbSNP
rs1052986883 805 dbSNP
rs923889319 806 dbSNP
rs186816654 808 dbSNP
rs895649250 809 dbSNP
rs1224564575 812 dbSNP
rs536705553 814 dbSNP
rs1013646011 828 dbSNP
rs1345240602 831 dbSNP
rs1025065169 837 dbSNP
rs917307884 838 dbSNP
rs1386510434 848 dbSNP
rs1288872838 864 dbSNP
rs950149705 866 dbSNP
rs905864489 867 dbSNP
rs1480661848 869 dbSNP
rs995284987 874 dbSNP
rs969344556 879 dbSNP
rs1002240743 880 dbSNP
rs886718017 881 dbSNP
rs150428941 888 dbSNP
rs1005033671 889 dbSNP
rs531472981 895 dbSNP
rs963686229 899 dbSNP
rs972631771 900 dbSNP
rs1204822839 905 dbSNP
rs1483134135 910 dbSNP
rs919406718 912 dbSNP
rs755470134 913 dbSNP
rs955065792 914 dbSNP
rs781678859 918 dbSNP
rs372492354 933 dbSNP
rs191653900 938 dbSNP
rs762658720 940 dbSNP
rs1258694928 945 dbSNP
rs965754176 949 dbSNP
rs995931390 956 dbSNP
rs867569767 957 dbSNP
rs943033970 961 dbSNP
rs1405094952 969 dbSNP
rs567872363 978 dbSNP
rs1170668014 980 dbSNP
rs535555225 981 dbSNP
rs925856757 1009 dbSNP
rs1373906944 1023 dbSNP
rs1169974258 1024 dbSNP
rs1244992687 1029 dbSNP
rs934566983 1029 dbSNP
rs756731525 1037 dbSNP
rs1357015748 1041 dbSNP
rs1461205924 1046 dbSNP
rs979537189 1050 dbSNP
rs183774901 1059 dbSNP
rs1053464003 1061 dbSNP
rs778462403 1068 dbSNP
rs956855036 1073 dbSNP
rs895609583 1074 dbSNP
rs1452728271 1077 dbSNP
rs1382024264 1085 dbSNP
rs1287603445 1086 dbSNP
rs79301493 1088 dbSNP
rs7103189 1102 dbSNP
rs1230237649 1108 dbSNP
rs1396896282 1116 dbSNP
rs1167581062 1117 dbSNP
rs1427999364 1118 dbSNP
rs539855805 1118 dbSNP
rs1164368519 1120 dbSNP
rs905318241 1136 dbSNP
rs771641530 1139 dbSNP
rs1002188091 1143 dbSNP
rs1299263608 1147 dbSNP
rs1311896556 1152 dbSNP
rs557844573 1153 dbSNP
rs576697131 1156 dbSNP
rs537707201 1165 dbSNP
rs556008227 1167 dbSNP
rs927401595 1169 dbSNP
rs1194882642 1175 dbSNP
rs1481909729 1177 dbSNP
rs1016301815 1179 dbSNP
rs1482252363 1180 dbSNP
rs1358071175 1183 dbSNP
rs1282388722 1189 dbSNP
rs1205119975 1190 dbSNP
rs1241039429 1191 dbSNP
rs1336143828 1196 dbSNP
rs1327863612 1201 dbSNP
rs574240268 1208 dbSNP
rs775292085 1210 dbSNP
rs138176450 1212 dbSNP
rs886666845 1225 dbSNP
rs1424141081 1231 dbSNP
rs117067264 1232 dbSNP
rs12272092 1234 dbSNP
rs902010834 1235 dbSNP
rs1180548574 1242 dbSNP
rs1363585730 1242 dbSNP
rs954868498 1244 dbSNP
rs987636237 1245 dbSNP
rs1481612956 1246 dbSNP
rs149549937 1248 dbSNP
rs1222724593 1259 dbSNP
rs1427507769 1260 dbSNP
rs563891302 1266 dbSNP
rs978492085 1268 dbSNP
rs903625248 1269 dbSNP
rs925618070 1278 dbSNP
rs1000513771 1286 dbSNP
rs771882919 1286 dbSNP
rs1347126317 1287 dbSNP
rs1200928035 1292 dbSNP
rs1404510956 1296 dbSNP
rs1348216290 1299 dbSNP
rs1371147665 1303 dbSNP
rs1401350749 1304 dbSNP
rs934322282 1308 dbSNP
rs1157552822 1311 dbSNP
rs1411578886 1315 dbSNP
rs1291897531 1316 dbSNP
rs1430361132 1320 dbSNP
rs1199717122 1326 dbSNP
rs1366972705 1327 dbSNP
rs377723984 1332 dbSNP
rs988710337 1348 dbSNP
rs917189808 1355 dbSNP
rs1194770817 1358 dbSNP
rs879446696 1363 dbSNP
rs1267468722 1369 dbSNP
rs531509897 1372 dbSNP
rs1263462318 1379 dbSNP
rs1223134171 1383 dbSNP
rs576760804 1392 dbSNP
rs549616469 1397 dbSNP
rs746813928 1398 dbSNP
rs371399335 1401 dbSNP
rs981040783 1413 dbSNP
rs1275786148 1414 dbSNP
rs927380597 1420 dbSNP
rs561644106 1422 dbSNP
rs1407306437 1423 dbSNP
rs905265807 1433 dbSNP
rs1176244449 1436 dbSNP
rs930738484 1437 dbSNP
rs1219970656 1445 dbSNP
rs1422681887 1448 dbSNP
rs1244496675 1454 dbSNP
rs763671541 1457 dbSNP
rs529094280 1460 dbSNP
rs1246820501 1461 dbSNP
rs1186608259 1463 dbSNP
rs1487849071 1468 dbSNP
rs899128393 1472 dbSNP
rs907872701 1477 dbSNP
rs1268946265 1482 dbSNP
rs1447268944 1485 dbSNP
rs751304579 1489 dbSNP
rs940712893 1495 dbSNP
rs993915108 1497 dbSNP
rs1167802012 1503 dbSNP
rs1390522775 1506 dbSNP
rs1341562768 1507 dbSNP
rs187101541 1524 dbSNP
rs1248257919 1529 dbSNP
rs1384258472 1532 dbSNP
rs890724679 1534 dbSNP
rs1009004769 1538 dbSNP
rs1017696966 1539 dbSNP
rs7943111 1542 dbSNP
rs978441484 1544 dbSNP
rs1437200578 1549 dbSNP
rs932120203 1551 dbSNP
rs1410123720 1553 dbSNP
rs1295518502 1555 dbSNP
rs1363367455 1561 dbSNP
rs1033182766 1562 dbSNP
rs1051051971 1569 dbSNP
rs190404289 1586 dbSNP
rs1445903390 1594 dbSNP
rs1385835570 1598 dbSNP
rs761547787 1599 dbSNP
rs988923903 1603 dbSNP
rs1234340975 1610 dbSNP
rs903574162 1614 dbSNP
rs35932333 1620 dbSNP
rs917156438 1623 dbSNP
rs1298857724 1625 dbSNP
rs1272739032 1627 dbSNP
rs1248327083 1633 dbSNP
rs971332710 1637 dbSNP
rs1360216432 1643 dbSNP
rs1344730620 1647 dbSNP
rs1312670799 1650 dbSNP
rs980029001 1662 dbSNP
rs1001030027 1674 dbSNP
rs1375997010 1677 dbSNP
rs1280432937 1682 dbSNP
rs113290707 1709 dbSNP
rs1369620618 1712 dbSNP
rs776676229 1722 dbSNP
rs1426047308 1729 dbSNP
rs551770348 1741 dbSNP
rs761904352 1742 dbSNP
rs1274501564 1744 dbSNP
rs920712259 1762 dbSNP
rs1177630277 1773 dbSNP
rs1463299191 1774 dbSNP
rs1187516552 1775 dbSNP
rs1013238082 1777 dbSNP
rs929303716 1778 dbSNP
rs1248439057 1779 dbSNP
rs570026323 1780 dbSNP
rs754713080 1786 dbSNP
rs1224955736 1795 dbSNP
rs537746202 1798 dbSNP
rs1264881517 1804 dbSNP
rs1220005231 1807 dbSNP
rs765390859 1810 dbSNP
rs1180050914 1811 dbSNP
rs890473070 1812 dbSNP
rs1009078174 1815 dbSNP
rs1228214169 1816 dbSNP
rs1002017073 1820 dbSNP
rs1039264102 1838 dbSNP
rs1286098236 1841 dbSNP
rs1027244286 1844 dbSNP
rs1406337217 1844 dbSNP
rs952127056 1849 dbSNP
rs1455922403 1850 dbSNP
rs1346946477 1854 dbSNP
rs1159705663 1859 dbSNP
rs985279747 1860 dbSNP
rs1405873283 1861 dbSNP
rs1167093530 1863 dbSNP
rs1386508940 1864 dbSNP
rs907994410 1865 dbSNP
rs900644627 1867 dbSNP
rs962027188 1872 dbSNP
rs1456962802 1874 dbSNP
rs1189602763 1878 dbSNP
rs1321416674 1882 dbSNP
rs1000353449 1885 dbSNP
rs976105325 1892 dbSNP
rs1032761293 1894 dbSNP
rs556145058 1895 dbSNP
rs1224504745 1900 dbSNP
rs1009892536 1904 dbSNP
rs1230495977 1915 dbSNP
rs1294647959 1927 dbSNP
rs1024362291 1929 dbSNP
rs1326401063 1930 dbSNP
rs971072733 1931 dbSNP
rs574380929 1934 dbSNP
rs927204351 1936 dbSNP
rs1363399422 1947 dbSNP
rs1052605924 1949 dbSNP
rs1321163760 1949 dbSNP
rs879642634 1949 dbSNP
rs1178402207 1950 dbSNP
rs555829085 1951 dbSNP
rs974335276 1952 dbSNP
rs796352468 1955 dbSNP
rs553260699 1956 dbSNP
rs920675812 1961 dbSNP
rs929351742 1964 dbSNP
rs368237356 1978 dbSNP
rs1189959150 1980 dbSNP
rs1204768078 1984 dbSNP
rs1483112150 1991 dbSNP
rs545537106 1995 dbSNP
rs911853462 2008 dbSNP
rs1002536226 2012 dbSNP
rs1308760976 2015 dbSNP
rs1026944810 2020 dbSNP
rs574478062 2020 dbSNP
rs944716507 2021 dbSNP
rs1039252709 2023 dbSNP
rs575779784 2025 dbSNP
rs1338596541 2034 dbSNP
rs1396428105 2038 dbSNP
rs1160194582 2041 dbSNP
rs1000352588 2042 dbSNP
rs1301333226 2045 dbSNP
rs1055062740 2050 dbSNP
rs564111611 2054 dbSNP
rs1360087065 2068 dbSNP
rs1014998963 2070 dbSNP
rs1387679824 2073 dbSNP
rs962139597 2077 dbSNP
rs1442226516 2078 dbSNP
rs541062162 2079 dbSNP
rs976052699 2082 dbSNP
rs1286955243 2086 dbSNP
rs1348092641 2095 dbSNP
rs1010378396 2097 dbSNP
rs1024063985 2098 dbSNP
rs1317112070 2107 dbSNP
rs539748777 2130 dbSNP
rs766538539 2131 dbSNP
rs1310401893 2133 dbSNP
rs1034266327 2138 dbSNP
rs1371457708 2139 dbSNP
rs559207594 2149 dbSNP
rs1442741487 2151 dbSNP
rs1367478089 2154 dbSNP
rs1212937276 2157 dbSNP
rs925590537 2160 dbSNP
rs1367231208 2162 dbSNP
rs962646916 2163 dbSNP
rs561681931 2165 dbSNP
rs1482678245 2169 dbSNP
rs1252136810 2174 dbSNP
rs182285461 2180 dbSNP
rs1481796359 2185 dbSNP
rs1195432115 2186 dbSNP
rs1025873217 2187 dbSNP
rs1052574551 2188 dbSNP
rs1355631463 2191 dbSNP
rs751901825 2198 dbSNP
rs983907686 2199 dbSNP
rs949149540 2211 dbSNP
rs1287990423 2216 dbSNP
rs1046009406 2219 dbSNP
rs1426348810 2223 dbSNP
rs1436900832 2224 dbSNP
rs1347471632 2226 dbSNP
rs1324358683 2240 dbSNP
rs912010508 2250 dbSNP
rs755277442 2251 dbSNP
rs974737803 2255 dbSNP
rs1458121857 2270 dbSNP
rs1411625452 2273 dbSNP
rs1181016571 2280 dbSNP
rs1471446031 2302 dbSNP
rs1248084560 2307 dbSNP
rs1199021868 2314 dbSNP
rs1048778043 2315 dbSNP
rs1265221796 2324 dbSNP
rs922175408 2330 dbSNP
rs936221968 2331 dbSNP
rs1054732289 2333 dbSNP
rs113537782 2343 dbSNP
rs1004430927 2351 dbSNP
rs1226341664 2354 dbSNP
rs1325993255 2355 dbSNP
rs946246828 2366 dbSNP
rs1015450395 2375 dbSNP
rs563111547 2378 dbSNP
rs1320876630 2382 dbSNP
rs1436381522 2384 dbSNP
rs559250409 2389 dbSNP
rs906993013 2398 dbSNP
rs1273841847 2404 dbSNP
rs1001185924 2407 dbSNP
rs1030460244 2420 dbSNP
rs1172761693 2435 dbSNP
rs953494390 2439 dbSNP
rs1190436536 2445 dbSNP
rs1465341223 2447 dbSNP
rs1033985974 2449 dbSNP
rs898179321 2450 dbSNP
rs17652258 2455 dbSNP
rs551520488 2460 dbSNP
rs958331356 2461 dbSNP
rs116603485 2468 dbSNP
rs1342976608 2477 dbSNP
rs1205756966 2480 dbSNP
rs951282107 2481 dbSNP
rs750364919 2482 dbSNP
rs1198427266 2487 dbSNP
rs1319099609 2491 dbSNP
rs186795956 2497 dbSNP
rs1454946165 2499 dbSNP
rs77965059 2506 dbSNP
rs1455736290 2518 dbSNP
rs1413489771 2521 dbSNP
rs1422614019 2525 dbSNP
rs974812987 2526 dbSNP
rs981821021 2528 dbSNP
rs921913138 2539 dbSNP
rs549385796 2544 dbSNP
rs937657281 2545 dbSNP
rs1186548351 2556 dbSNP
rs144164783 2561 dbSNP
rs1237775988 2565 dbSNP
rs193210922 2574 dbSNP
rs1384506132 2578 dbSNP
rs1440967979 2582 dbSNP
rs1322288767 2584 dbSNP
rs564642038 2595 dbSNP
rs1341496838 2602 dbSNP
rs909104210 2603 dbSNP
rs1036827665 2622 dbSNP
rs1230470966 2623 dbSNP
rs778340005 2626 dbSNP
rs1442605094 2627 dbSNP
rs1284042542 2642 dbSNP
rs901004402 2649 dbSNP
rs1295191884 2651 dbSNP
rs16919393 2654 dbSNP
rs907380987 2663 dbSNP
rs1429860509 2667 dbSNP
rs1229091307 2676 dbSNP
rs1166653087 2685 dbSNP
rs937049296 2691 dbSNP
rs1055553023 2702 dbSNP
rs1030406560 2708 dbSNP
rs898119111 2712 dbSNP
rs1181119368 2713 dbSNP
rs1471672217 2724 dbSNP
rs1252932489 2729 dbSNP
rs1007948171 2738 dbSNP
rs1482778123 2742 dbSNP
rs1354351133 2747 dbSNP
rs995217239 2762 dbSNP
rs1223861669 2775 dbSNP
rs1032354823 2793 dbSNP
rs539218759 2797 dbSNP
rs139952347 2805 dbSNP
rs1227005069 2807 dbSNP
rs1352673246 2829 dbSNP
rs1289854590 2830 dbSNP
rs1409990689 2838 dbSNP
rs887053425 2839 dbSNP
rs779598481 2840 dbSNP
rs1296006549 2842 dbSNP
rs535442360 2846 dbSNP
rs185609292 2848 dbSNP
rs1350444511 2850 dbSNP
rs141831199 2852 dbSNP
rs763078428 2854 dbSNP
rs188557117 2858 dbSNP
rs146251265 2859 dbSNP
rs1472426798 2862 dbSNP
rs1195964782 2867 dbSNP
rs1367291047 2871 dbSNP
rs1029044705 2874 dbSNP
rs1488828728 2881 dbSNP
rs1457836843 2887 dbSNP
rs1219943891 2892 dbSNP
rs982270511 2893 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9440.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000251871.3 | 3UTR | UUUAUUUAGCACUUUCAAACUUUUCACUUUAUAAAUGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
145 hsa-miR-5696 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057820 SLC30A7 solute carrier family 30 member 7 2 2
MIRT061215 MED17 mediator complex subunit 17 2 2
MIRT061275 IPO7 importin 7 2 2
MIRT087540 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 2 2
MIRT090979 DPH3 diphthamide biosynthesis 3 2 2
MIRT100413 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT108737 XIAP X-linked inhibitor of apoptosis 2 2
MIRT116191 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT185488 LBR lamin B receptor 2 2
MIRT239133 GLO1 glyoxalase I 2 2
MIRT314678 TMEM167A transmembrane protein 167A 2 4
MIRT365830 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT375653 VPS53 VPS53, GARP complex subunit 2 2
MIRT441652 DEK DEK proto-oncogene 2 2
MIRT442230 BTD biotinidase 2 2
MIRT443351 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT444349 KIAA1211 KIAA1211 2 2
MIRT444907 KIAA1841 KIAA1841 2 2
MIRT445301 PRR26 proline rich 26 2 2
MIRT446678 SMIM10 small integral membrane protein 10 2 2
MIRT449658 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 4
MIRT456346 OLIG3 oligodendrocyte transcription factor 3 2 8
MIRT466384 TGOLN2 trans-golgi network protein 2 2 4
MIRT467279 SPNS1 sphingolipid transporter 1 (putative) 2 2
MIRT478065 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT479422 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT482866 SMIM12 small integral membrane protein 12 2 4
MIRT484696 RNF11 ring finger protein 11 2 2
MIRT497699 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT499111 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT500787 TLK1 tousled like kinase 1 2 6
MIRT504644 RPL9 ribosomal protein L9 2 6
MIRT505947 RAN RAN, member RAS oncogene family 2 6
MIRT513837 KCTD15 potassium channel tetramerization domain containing 15 2 4
MIRT514437 C15orf59 chromosome 15 open reading frame 59 2 2
MIRT518810 AKAP8 A-kinase anchoring protein 8 2 4
MIRT519802 ZMYM2 zinc finger MYM-type containing 2 2 4
MIRT525377 SYNM synemin 2 2
MIRT525993 MAGEL2 MAGE family member L2 2 2
MIRT527715 SSC5D scavenger receptor cysteine rich family member with 5 domains 2 4
MIRT528057 OLAH oleoyl-ACP hydrolase 2 2
MIRT528636 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT529170 CCDC25 coiled-coil domain containing 25 2 2
MIRT529585 TMEM220 transmembrane protein 220 2 2
MIRT529806 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT531260 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT531428 MPZL3 myelin protein zero like 3 2 2
MIRT532139 ZNF331 zinc finger protein 331 2 2
MIRT532350 PLEK pleckstrin 2 2
MIRT533533 TPR translocated promoter region, nuclear basket protein 2 2
MIRT535822 MTFR1L mitochondrial fission regulator 1 like 2 2
MIRT539243 ANKRD50 ankyrin repeat domain 50 2 2
MIRT543556 RPF2 ribosome production factor 2 homolog 2 4
MIRT544899 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT545103 RAG1 recombination activating 1 2 2
MIRT549060 CALM1 calmodulin 1 2 2
MIRT550044 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT550055 MDM2 MDM2 proto-oncogene 2 2
MIRT550475 TMEM241 transmembrane protein 241 2 2
MIRT550654 ZFP37 ZFP37 zinc finger protein 2 2
MIRT553599 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT554614 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT555639 PHIP pleckstrin homology domain interacting protein 2 2
MIRT556262 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT558529 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT559171 BRAP BRCA1 associated protein 2 2
MIRT565206 TROVE2 TROVE domain family member 2 2 2
MIRT566063 RCC2 regulator of chromosome condensation 2 2 2
MIRT566721 MSL2 MSL complex subunit 2 2 2
MIRT566775 KIAA1804 mitogen-activated protein kinase kinase kinase 21 2 2
MIRT567594 FANCF Fanconi anemia complementation group F 2 2
MIRT568752 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT571253 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT573768 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 2 2
MIRT609525 AZI2 5-azacytidine induced 2 2 4
MIRT613118 EID1 EP300 interacting inhibitor of differentiation 1 2 2
MIRT613588 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 2 2
MIRT616958 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT622619 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 2
MIRT624015 EPHB1 EPH receptor B1 2 2
MIRT624709 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT625797 MDC1 mediator of DNA damage checkpoint 1 2 2
MIRT627957 NLK nemo like kinase 2 2
MIRT634868 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT635722 ALKBH4 alkB homolog 4, lysine demethylase 2 2
MIRT636107 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT636943 LIMS3 LIM zinc finger domain containing 3 2 2
MIRT637009 LIMS3L LIM zinc finger domain containing 4 2 2
MIRT638057 YAE1D1 Yae1 domain containing 1 2 4
MIRT640158 CDK13 cyclin dependent kinase 13 2 2
MIRT640170 ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 2 2
MIRT640992 PROK2 prokineticin 2 2 2
MIRT641339 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT642042 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT642074 FUT11 fucosyltransferase 11 2 2
MIRT642101 FAM84B family with sequence similarity 84 member B 2 2
MIRT642348 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT642583 KIAA0101 PCNA clamp associated factor 2 2
MIRT644131 TRAPPC13 trafficking protein particle complex 13 2 2
MIRT646409 HLA-DRB1 major histocompatibility complex, class II, DR beta 1 2 2
MIRT646829 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT648356 AKIP1 A-kinase interacting protein 1 2 2
MIRT650019 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 2
MIRT650602 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 2 2
MIRT650727 TNFSF8 TNF superfamily member 8 2 2
MIRT651322 ZCCHC2 zinc finger CCHC-type containing 2 2 2
MIRT652450 TMEM236 transmembrane protein 236 2 2
MIRT652676 TIGD2 tigger transposable element derived 2 2 2
MIRT652720 TGFBRAP1 transforming growth factor beta receptor associated protein 1 2 2
MIRT653517 SLC41A1 solute carrier family 41 member 1 2 2
MIRT654405 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT654655 PSPH phosphoserine phosphatase 2 2
MIRT654943 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT655062 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT656554 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT657666 GPR26 G protein-coupled receptor 26 2 2
MIRT659634 CDKN2AIP CDKN2A interacting protein 2 2
MIRT660584 APP amyloid beta precursor protein 2 2
MIRT664200 TBCA tubulin folding cofactor A 2 2
MIRT664577 CD44 CD44 molecule (Indian blood group) 2 2
MIRT665240 ZNF514 zinc finger protein 514 2 2
MIRT665248 ZNF362 zinc finger protein 362 2 2
MIRT666382 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT667264 NAV2 neuron navigator 2 2 2
MIRT668770 DCP2 decapping mRNA 2 2 2
MIRT668905 CREB1 cAMP responsive element binding protein 1 2 2
MIRT669411 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT672667 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT675818 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT690310 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT707804 TSPAN6 tetraspanin 6 2 2
MIRT709402 TADA2A transcriptional adaptor 2A 2 2
MIRT709982 RBM41 RNA binding motif protein 41 2 2
MIRT711203 SMIM14 small integral membrane protein 14 2 2
MIRT714928 ZNF264 zinc finger protein 264 2 2
MIRT717438 TENM1 teneurin transmembrane protein 1 2 2
MIRT717501 UFL1 UFM1 specific ligase 1 2 2
MIRT719812 TXNDC17 thioredoxin domain containing 17 2 2
MIRT720569 TMEM72 transmembrane protein 72 2 2
MIRT721192 FAIM3 Fc fragment of IgM receptor 1 1
MIRT721414 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT721575 SLC5A12 solute carrier family 5 member 12 2 2
MIRT724675 NCAPG non-SMC condensin I complex subunit G 2 2
MIRT725507 FUT9 fucosyltransferase 9 2 2
MIRT725533 EN2 engrailed homeobox 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-5696 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-5696 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-5696 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-5696 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)

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