miRTarBase - #MIRT061259


—
pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol AMOTL1   
Synonyms JEAP
Description angiomotin like 1
Transcript NM_130847   
Expression
Putative miRNA Targets on AMOTL1
3'UTR of AMOTL1
(miRNA target sites are highlighted)		 
>AMOTL1|NM_130847|3'UTR
   1 CTGCCATCCCTGTGGAATTTCAGTACAGAACACTGACAAACAAGGAAAGCGGCAGAGAAAGAAGAAAGACCTAGAAGGTT
  81 GTAGATGGGAAATCAGGAATGATTTGAACTGATAAAGATTTCAGACTCATAAGAACACATTTTATAAATGTTAAACACAA
 161 AAACTACATGACTGAAGATAGAAGAGAATGCGATGGATTTTATTACACATGGTGGAAGAGAGAAGAGGCGTGTAGGTTTG
 241 CAAACAAAGTTAAGAAATAGGAAACTGAATTTTTCATTGTACAGAAAATGTATCTCTTGGGGAGGGCCTGTGTACCCCCA
 321 TTCTCTGATTATAAACAGATAAACCCAAATGTGGATCATCCTTGGAATACCCCCATTCTCCTTGCCTCTTAGCATGTTTG
 401 ATTTAAGAAAAGCCTCCAGGAAATCTTGAGAGCCTGTCTTGGCATAATGCAGTGTCACCTGTGCCAACCATGGGGTGTCC
 481 CGTGAGTGTGAGTGTGGCAGTGAGAAGAAGCATCGAGGGCGAGGGGAATATGAAAGTTGGTCTTCACCTAATTACCTGTT
 561 TGGTTTGGATTTTCAAGAGATGATTGGGCTTCTTAGCTTTTCTGAATTCTGCAGTATTTTCTAAACAGGATAGATTATGA
 641 TCTCGGTCCCCATCCATCCTAACTTCTGAGTTCATCTCTGTCTCTGCTTTACAGTCTTTAATTTTTTGTTGTTCCTTCAT
 721 TTTTTTCTTTTTAATAAGACATAGCAGAATTCCTTAGGTATGGGATTTATGAGACCAGTACCTGAACTGTCATCATTCCT
 801 ACTGTGTTTGATAGTGACCAGTAGGACAAAGCCACGTGCCGACTTCCTGGCTGCTTCACCTTTGCATAGCTGGGTTGCAG
 881 CTGCGAACCTCATTCTGACTGTGAACTAAGCAAGCTTTGAGGAGGCAGGAGATTCCGTGGGTCCCTGTGACATATTGCAT
 961 TAAGATCGTGGCACTTGCTTTTTTGTCTTTCACATCGGCTGTCTTGCAAGGAGCTTGACATTTCCAAATTCCATTGCTCT
1041 GTTTGGGGAAGACTTAGGACAGCACTCCAGGAAACAGATGACAATTTACAGACAGTTGTCTCAGTGGTTTCCAGAATCTC
1121 ACCAGCCTCCCGTATAGCTTCTTGTATTGAGGCTCATGAGCGTATTCACACTCTTTCCTCCCCCGCGCACGCCTCTGCTT
1201 GCTCTCGATCAGCATCCAGACCTCCGTGGCACCAGGTTGCCTCTGTTGTGAACTTCTTTTGTAACCTACCAGGCCAGTTG
1281 TATATACAGTGTTGTCAGGTTTTTCCGGGTTTCAGTTTTGAGGCAGTTTATTCAAAGTGAGACAGAAGTGCCACGGAAAA
1361 GAGGCAGGAGTGTGTTAGGTGGTGGGTCCATTAGACCTCTGCTGTGACATTGCATATTCAGCTCTGCAGACACTGGCTTC
1441 CTTTACAAATCTAAGAGATGCTGGATTAGAAAAGAGGAGAAGCTCATCGGGCCATCAGAGAGATGCTCCTACAGGGTCCT
1521 GATGTTTTTGTACCTCCAGGTCAGCTGGATCGCTGTTTTCCCAGTTCCCTTTGCTCATGCTTACTTAGAGGAAGAAAGAA
1601 AGGGGGGTACCTCTTCCAAGTACCTTCTAAATGAAACACTCAAGAGAGTGCTACTCAGGAAACTTTGCTTGGATCCTAAA
1681 ATGGACTGGTCTTGGGTGTGTAACCCCGGTGAAGTTATAGCCTCCCCAAATTGAGGTGACAGAAGGAAGACAAGAGGTGT
1761 AAGCTGGAGAGGGAAGGGAAGAAATCAGTGGCTTTGGCCAGCCTCTGTGCCACCCAGTACGACAGAGGAGTGGGAACTGG
1841 CCCTCTGGGGCTCTGCTTGGCCATAGGCACTGCACATTGTGCCACCTGCTCATCACCTCCTCTAGTCTCACACTGAGCAT
1921 CGGAGTACCTGTTGTGCAGACAGGAAAACTGAGGAGCTCTGAGAGGCTGAGCATGGAGCTCACCCCATGCCATAGGGTGT
2001 GGGAAGAGGGCACAGGAGGCCTCATCCATGGGGGAAAGGGTTGAGGATGGACATGGGTGGGGAGAGGGCATAGACATCCC
2081 TTCCTAATCTCTGTTCCCACCACATTTCATAGGAGATGAGTTAGGAGATGACAGCTAACTCTCTTAAGGACATTTTGACC
2161 CCAGTTTATGTTGGGGATGGACCAGAAAGGAAAATGTCTAGAGATAGGAAGGTAAATCAACTCTGCCAGCCCCTACCATC
2241 AGGTCTGGGCCACCCCAAACTTGGGCTGCCTCCCTTAGACATAGGTTAGAGTGAGAGACCCAGCTGTTTCTCCCGAAGCC
2321 TCGTCTTCATGCCCCAGACACCTGATTGCCCCAATCAGGTGTCAGACTTGCTTGCTCTTCGAGGTCCCCCTGAGCTGCCA
2401 AGTGTTTTCATTGTAAACAGACACATCGCCATGTTTCAGGGCTTCAACGGCATTGTATTTTGGACTTTGACCGTATTTTT
2481 TTTCTCTTAACCTACTGAGACTCTTCCTTAAGAACAGGATCTATAGCTTTAAAATGTCTTCTTCTATGGGAAATTTCCTG
2561 CCAAGCCAGGGCACTAAATTCTTTCATCATTAGAGCTTTCCTGAAGTCCGGCCATATACTGAGTACCTGCTCTGAGTTCT
2641 GGGCAGCTTACAATATCTTAAACAGATTTTCAGAAAAATAATGCAACTATATTTTCTAGTGTCAACTGTATGCAAACAGT
2721 GTGGTAAATACCTTTTAATTAGTCCTCCACCCACCTGGAGTACAGGGGGTGCGTTTATTATTCTGATTTCACTGATGAGG
2801 AAATGGGCTCAGAAAGGTTAAGTCCCTTCCTGAAATCTCACAGCCAGGAGAAGCTAGGATGATTTAAAACAAAGTTTGGA
2881 GAGGCACTGGGCATAGACCCTGGCTGTACAGCCTCTAACATGCGGCACTGCATCTTGGCAGTCTCTATGCCTGTCTGTGA
2961 TGTGTGTGTGCACGTGTAACTACACACACACACACACACACACACACACACACACACAGCTATCACACATCTCAGAGCCT
3041 AAGAAATAGGACTAAGCCCAGAACTCCTAGAATCACCTATAAATGCTAGGCATAGATGGAAATTATTGTGTTCCACCAGA
3121 AGCACAGCTCCAAACTATACCTAAAAAATATTTCTGCACTTCCCAGAGACCTGGACTTCAAACTTTCCCAGTGGAGCCTG
3201 ATTATAGAACTTGAGGGTCCTATCTCAGGATGAAGGGGAGAGGCCCTGGCTTCACGGGAAGGTATTCCAGCATTGTTCTG
3281 CTTCACCCTTGACTGCGTTGTCTGGCAGTTTCTGTGTGCTGCCAGGATATTATATGGAACTGGAGAAGTTGGAGTCAGGT
3361 CTCTGAAGCTAGAGTTTCACTAATTAGATGCCTCTGTACATGAGAACTATTACTGTCTGCAGGTCCATATAGCTAAGCTG
3441 CCAGGAAAAACACATTATCTTCCAAAACTTTCAGAGCATGTGCAGAACCCTTTCTTAGCGTTTTCTTCTCAGCATTTTCT
3521 CTGCCTCCCAGAGGCTGGCAGCCAGTGACACTGCAGAGTTCAGCATGTTCTAACCATGCACGCAGGGCAGGGGCTGCCTT
3601 GGCCCTCCTCAGGCTTTCGTTGGGAGAGCAGGCAGTGGTGGAGCCCTTCTGGGTGCAGTCCTCTGGGGTTGCTCTTTGGA
3681 ACTCATGTATGAGTTTGACTCCACAAGGCTTGGCATGGATACCAAAACAGTTGCAACAAATTAGTTCTGAACCTGGAACA
3761 GAGAATTCAGTGCTTCTGTTACTCAGGAAGGAGGTGTTCAGAATGCCCCGTGCAGAGCAGCCAGTCATTACTCTTGTTTG
3841 TTCTCACCTGGGTGCGCACCCTCATGATGCAGTGGCTGTAGCACCTTCATGCCAGGTGCTGAGAGAATGGGAAATTCTTC
3921 CTCCCCATTGACCTGAGTCCCAGAGACTTAGGGACACAGACTTCAGGTGAGGCTGCGGACCTCAGAAGCAGTGGATAATA
4001 GATTGGGGCATTAAAAGCTTTTGAGGCAGGGGGCTCATGTTTTGACTGCAGGGAGTTATGCTGAGCAAAGAGATGTGTTT
4081 TTCAAAACCAGGGTTCAAAACCAGTGTCCACGCTGGAGTAAGTGGAGCATGCTTCTCTGTGTTCTCTGAATGATCTTGCA
4161 CTCCTCTTAAGCAAAGGAGTACCATGACCATAGTCAGTGGGATCCCACAAATGTTCTTAAATGGGTAAGGCTTTAAGTAG
4241 CCAGAGAGTATCCAGCCTACCATTGGCTTCTCCACATCCTAAAACCTGAGACAGCCTTGGTATATGCTTTATAAATGTTT
4321 CTTTTCTTGTTGTTTAAGTAATTAAAGTGTTTAAAATGTCTTCATTAGATGTGACGATTGTTTAATGAGTTTGCCTCTGA
4401 CGTGTGGCTCCATGGGAGATAGGCAAAGTAATTAAGAAGTTACCAGAAATTGGTCGGCTGGGGAAATGCAAAAGTTAGCA
4481 TTTCAGTAGTGAATTTCTCCTGGAACAAATGAGCAATTTTTCCTCTTTCTCTTAAGTAGTATACCCTTTTCTCACTTAGT
4561 AATTTAATGGTATATAAAGACATGTGTATAAGTGAGTGCATACATATGAGGTATGACTATAGGGTTGTTTGTGGGAATTT
4641 CTTTTCCTAACATACAGAAGATCAAAGTGTTCATCTCACCCCGCCCTCCTTAAAAGGTGTCTTTTGGGAGACTATGTGCT
4721 CATTGACTATAGTGCTGCCAAGTAAAAATATCTTGGGAACTCTTCTACTAGAATGGCCTTCAGGGCTTGGCATGTTCCTT
4801 TGGTTTACCCTTAGAGATGAGAAATCCTCCTCCTTTGAGGATGGATTTAAGTTCTGGAAATAATCTCAAGTGCTTGATAG
4881 CACAGTTGGATGAAAAAAGATGGCAATTAAGGTAAGTTACACCATTTTTGTTTCTAAAAAAATCCCTAAGAAATTTCTTG
4961 GAATGAGTCTTTGGCCTCAGAGCCTCTCAAAGTGTCCACTTCAAGGGGGGATCATCCTCATTAGCACACAGATTTTTAAA
5041 AATCAATTCTCTTGCCATGCCTCCTATGTGTTCACATCTCTGCATACACTACAGATATAAGTGCATAATCATTCATATAA
5121 ACATCTGGTAGGTATTCTGTAAAACTGTGTTTACTTTAGTGCATGTTATTGTCATGTTATGATGTGACTGGGGTGTTTCT
5201 TTGTCATGAAACTTTGCTTCTTCACAGAATTAGAATACTGCTCTCTCTATATTGAACTACATATACAGCGTTTTCTTGTA
5281 TCAGCCCCCAAAGTCTGGATGCCCGGTGTTGTGTTTACATGTGATTGTGCCTAGGAGTCTGTTCACATAGAGACACCTGT
5361 AAGTATTTATTACAAAACGGAATGTAAGCAAATATATCCACATTGGTTTTATTTGAATCAAGGTGTTTTTTTGTTTTTTG
5441 TTTTTTTTCCTTTTGAGGAGGAACAGGGAGCCTCCTCCTCCATGAGCACTTACAGAATTGTGTAAAATTCTGTGAAACAG
5521 TGGTAAGCATGGGCACCCGATTTCAGCTGTCCTGCTGCCGCTGCCCTCCAACCTGCTCTGTGTGTGTGTGTCGCTGTGCT
5601 TGGTGGCAGTGTGCCGTGCTCGTGCCGGCTCTTCCCAGCAGACTGGTATCTGGCTGTAACGTTTGACGTCTTCATATTGC
5681 CAGTCTGTATTGAGGGGTGATGTACATGGCCATACAGCCAAATGGGTCTGTGTACCAGTGTGGGGATTCCAAGAACACTG
5761 CCTGTCCCCCACAGCAAATATTGATGCTGTTGGTCAGCCAAAGATTTTCCTCTCCTTTGCTGCTTAAACTTGTGCCTTAA
5841 TATTGTACATAATAAATGGATAAAATGGCAAAATGACTCTTTTCTCTCGCTTGCTCCTTTCTTCCTTAAAGAACTTATAA
5921 ACTGATGCTCAATAAATGTTTCATTTCATTGTACCCCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuuaGUGUUU--ACA-GGAAUUAUc 5'
              | :|||  ||| |||||||| 
Target 5' gctgCTTAAACTTGTGCCTTAATAt 3'
 5819 - 5843 160.00 -9.00
2 
miRNA  3' cuUAGUGUUUACAGGAAUUAUc 5'
            ||| |||:||  |||:||| 
Target 5' taATCTCAAGTG--CTTGATAg 3'
 4861 - 4880 152.00 -15.40
3 
miRNA  3' cuuaGUGUUUACAGGAAUUauc 5'
              |||||||||:|||||   
Target 5' atccCACAAATGTTCTTAAatg 3'
 4202 - 4223 146.00 -17.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM9611436 1 COSMIC
COSN31587928 4 COSMIC
COSN30168483 11 COSMIC
COSN30532634 51 COSMIC
COSN24383259 78 COSMIC
COSN8879556 525 COSMIC
COSN22919045 533 COSMIC
COSN5711051 716 COSMIC
COSN23434589 914 COSMIC
COSN17075733 1068 COSMIC
COSN6407749 1156 COSMIC
COSN4700173 1861 COSMIC
COSN5711052 1874 COSMIC
COSN31960675 2007 COSMIC
COSN1550702 2229 COSMIC
COSN16034603 2546 COSMIC
COSN1550703 2571 COSMIC
COSN27212525 3019 COSMIC
COSN27284878 3019 COSMIC
COSN27297211 3019 COSMIC
COSN2469285 3256 COSMIC
COSN23873440 3692 COSMIC
COSN26703323 3953 COSMIC
COSN32057893 4073 COSMIC
COSN8286366 4288 COSMIC
COSN23814648 4364 COSMIC
COSN20127674 4457 COSMIC
COSN19080280 4861 COSMIC
COSN31561689 5270 COSMIC
COSN31530191 5276 COSMIC
COSN31481468 5333 COSMIC
COSN31536571 5386 COSMIC
COSN31577114 5433 COSMIC
COSN26505768 5441 COSMIC
COSN31537008 5442 COSMIC
COSN30540548 5472 COSMIC
COSN31523677 5504 COSMIC
COSN26664501 5547 COSMIC
COSN30542133 5561 COSMIC
COSN27353928 5591 COSMIC
COSN30542014 5598 COSMIC
COSN31589282 5716 COSMIC
COSN26603925 5754 COSMIC
COSN16418411 5843 COSMIC
COSN31569941 5880 COSMIC
COSN31607865 5916 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1019931589 5 dbSNP
rs1235973389 6 dbSNP
rs1254811647 7 dbSNP
rs1347748966 9 dbSNP
rs759016619 13 dbSNP
rs1192232875 20 dbSNP
rs767104994 22 dbSNP
rs1456630633 23 dbSNP
rs752243928 24 dbSNP
rs769782140 30 dbSNP
rs1196753702 31 dbSNP
rs1453921988 34 dbSNP
rs1196833386 44 dbSNP
rs773097565 49 dbSNP
rs375793570 51 dbSNP
rs1053085542 54 dbSNP
rs1021424439 60 dbSNP
rs747764423 61 dbSNP
rs1188889835 65 dbSNP
rs968420016 65 dbSNP
rs977501929 70 dbSNP
rs1011565290 71 dbSNP
rs1259929161 79 dbSNP
rs769722607 86 dbSNP
rs905977915 88 dbSNP
rs1443924540 89 dbSNP
rs1399527369 92 dbSNP
rs1165526559 96 dbSNP
rs1406980627 138 dbSNP
rs1001631257 139 dbSNP
rs553382502 145 dbSNP
rs548505386 151 dbSNP
rs1382399670 161 dbSNP
rs1176914276 169 dbSNP
rs1364754607 169 dbSNP
rs992445385 171 dbSNP
rs1224466803 180 dbSNP
rs1450338519 180 dbSNP
rs1289628567 189 dbSNP
rs896031669 190 dbSNP
rs1374308332 191 dbSNP
rs11020969 192 dbSNP
rs1025930062 193 dbSNP
rs1375562561 198 dbSNP
rs918148778 208 dbSNP
rs1438542131 210 dbSNP
rs950351063 219 dbSNP
rs984479094 230 dbSNP
rs1015997516 231 dbSNP
rs77309754 232 dbSNP
rs138931586 233 dbSNP
rs564253378 260 dbSNP
rs1439270970 261 dbSNP
rs1230955196 276 dbSNP
rs1279579096 277 dbSNP
rs531499958 279 dbSNP
rs1347197809 280 dbSNP
rs1211643442 289 dbSNP
rs1477326964 291 dbSNP
rs1246629468 293 dbSNP
rs142865632 298 dbSNP
rs989125142 303 dbSNP
rs1479748788 307 dbSNP
rs944025043 312 dbSNP
rs183488338 314 dbSNP
rs1220448700 326 dbSNP
rs1365476598 336 dbSNP
rs1274157097 340 dbSNP
rs899748755 345 dbSNP
rs539698660 350 dbSNP
rs996685957 352 dbSNP
rs111812451 355 dbSNP
rs1251685384 356 dbSNP
rs1421310660 365 dbSNP
rs1178404275 366 dbSNP
rs754001648 370 dbSNP
rs1461584454 371 dbSNP
rs777605680 373 dbSNP
rs746917095 381 dbSNP
rs905925506 382 dbSNP
rs1261499496 384 dbSNP
rs1435908787 386 dbSNP
rs1487796552 395 dbSNP
rs1174908561 399 dbSNP
rs1211679281 411 dbSNP
rs1031817888 416 dbSNP
rs959761088 452 dbSNP
rs371080614 458 dbSNP
rs1219194619 459 dbSNP
rs553639282 469 dbSNP
rs371843976 475 dbSNP
rs1298446042 482 dbSNP
rs1399156162 482 dbSNP
rs566691261 483 dbSNP
rs980913690 489 dbSNP
rs920063663 493 dbSNP
rs1446045050 503 dbSNP
rs201376260 504 dbSNP
rs767541695 515 dbSNP
rs994376656 516 dbSNP
rs565736102 521 dbSNP
rs533396551 522 dbSNP
rs1170486934 526 dbSNP
rs1236427264 529 dbSNP
rs1475727075 532 dbSNP
rs752917830 544 dbSNP
rs1183267607 548 dbSNP
rs760831521 556 dbSNP
rs1305908021 557 dbSNP
rs551928491 564 dbSNP
rs188140155 566 dbSNP
rs1319998697 567 dbSNP
rs1256061157 581 dbSNP
rs779110010 581 dbSNP
rs74452510 584 dbSNP
rs535089774 585 dbSNP
rs964418183 592 dbSNP
rs932529189 614 dbSNP
rs1378636885 615 dbSNP
rs1332209850 617 dbSNP
rs1449072288 627 dbSNP
rs567664417 628 dbSNP
rs144557782 631 dbSNP
rs1458830824 639 dbSNP
rs999080205 640 dbSNP
rs757826909 645 dbSNP
rs1052906260 646 dbSNP
rs553205361 647 dbSNP
rs1421689269 648 dbSNP
rs1384215319 657 dbSNP
rs555567829 661 dbSNP
rs1458695820 676 dbSNP
rs895549916 700 dbSNP
rs1455034020 709 dbSNP
rs1197964578 717 dbSNP
rs1196126509 720 dbSNP
rs372476575 720 dbSNP
rs1416753296 728 dbSNP
rs1427455265 734 dbSNP
rs1170665571 735 dbSNP
rs1488734875 742 dbSNP
rs1374391619 748 dbSNP
rs1242338169 753 dbSNP
rs367649351 759 dbSNP
rs574178916 761 dbSNP
rs1374805746 765 dbSNP
rs1308562086 770 dbSNP
rs1387872661 772 dbSNP
rs1393429577 776 dbSNP
rs191791751 788 dbSNP
rs1457706297 793 dbSNP
rs1364621541 796 dbSNP
rs1394953615 803 dbSNP
rs1158841548 805 dbSNP
rs1443008239 811 dbSNP
rs1301007695 814 dbSNP
rs969625739 819 dbSNP
rs1377966690 823 dbSNP
rs182141713 826 dbSNP
rs546679503 827 dbSNP
rs1269361601 833 dbSNP
rs112929291 836 dbSNP
rs775758472 838 dbSNP
rs1207894163 839 dbSNP
rs1490116514 841 dbSNP
rs1027174538 842 dbSNP
rs1365774445 856 dbSNP
rs952944388 858 dbSNP
rs983353850 861 dbSNP
rs947316407 871 dbSNP
rs1214102521 873 dbSNP
rs978696383 875 dbSNP
rs1386601045 877 dbSNP
rs927296371 885 dbSNP
rs1309424259 886 dbSNP
rs1421145320 900 dbSNP
rs937377893 902 dbSNP
rs1231689244 915 dbSNP
rs921242864 926 dbSNP
rs1157546663 930 dbSNP
rs76905793 932 dbSNP
rs557925336 937 dbSNP
rs369221352 938 dbSNP
rs895925170 939 dbSNP
rs1216070805 940 dbSNP
rs1240902296 955 dbSNP
rs1263648318 964 dbSNP
rs930111928 967 dbSNP
rs754567810 968 dbSNP
rs73520317 969 dbSNP
rs561621523 971 dbSNP
rs1254282673 972 dbSNP
rs1233179933 973 dbSNP
rs1319135777 977 dbSNP
rs1421045541 983 dbSNP
rs1473984703 988 dbSNP
rs528874690 992 dbSNP
rs1053322248 995 dbSNP
rs747866299 997 dbSNP
rs1396212493 998 dbSNP
rs1462864808 999 dbSNP
rs576772894 1002 dbSNP
rs1170233371 1004 dbSNP
rs769022998 1008 dbSNP
rs995883242 1010 dbSNP
rs541006876 1014 dbSNP
rs954502005 1015 dbSNP
rs1289454023 1027 dbSNP
rs1476703905 1031 dbSNP
rs1010453754 1033 dbSNP
rs1413149069 1036 dbSNP
rs1292956311 1038 dbSNP
rs796891305 1046 dbSNP
rs1020079272 1058 dbSNP
rs777663345 1059 dbSNP
rs953038707 1066 dbSNP
rs968563576 1076 dbSNP
rs1203111452 1082 dbSNP
rs1458652953 1083 dbSNP
rs1004393229 1090 dbSNP
rs1235477146 1093 dbSNP
rs1016151018 1102 dbSNP
rs559212402 1103 dbSNP
rs148451883 1112 dbSNP
rs1316788647 1128 dbSNP
rs559611526 1132 dbSNP
rs774183441 1133 dbSNP
rs954059422 1140 dbSNP
rs992861442 1145 dbSNP
rs978753344 1154 dbSNP
rs79528877 1156 dbSNP
rs531079356 1157 dbSNP
rs745736473 1158 dbSNP
rs202193655 1161 dbSNP
rs528266077 1162 dbSNP
rs934537867 1163 dbSNP
rs373935195 1165 dbSNP
rs917044896 1166 dbSNP
rs141696628 1171 dbSNP
rs1362513260 1172 dbSNP
rs1039963981 1174 dbSNP
rs1432980549 1174 dbSNP
rs1312428656 1185 dbSNP
rs1459705672 1187 dbSNP
rs760958099 1188 dbSNP
rs930314479 1191 dbSNP
rs561906408 1192 dbSNP
rs762107929 1196 dbSNP
rs1353856287 1203 dbSNP
rs1278084217 1205 dbSNP
rs1373146015 1207 dbSNP
rs1388896779 1208 dbSNP
rs1163211595 1212 dbSNP
rs1224817672 1219 dbSNP
rs1287016269 1226 dbSNP
rs1051449942 1227 dbSNP
rs1176783114 1230 dbSNP
rs1209479474 1233 dbSNP
rs1280449238 1236 dbSNP
rs890164489 1237 dbSNP
rs1009987199 1249 dbSNP
rs1179303949 1251 dbSNP
rs765598532 1266 dbSNP
rs1221306897 1268 dbSNP
rs968510593 1283 dbSNP
rs1000010273 1286 dbSNP
rs1221563675 1286 dbSNP
rs1034206572 1287 dbSNP
rs1372590014 1288 dbSNP
rs1470416968 1295 dbSNP
rs958663050 1298 dbSNP
rs1438473055 1308 dbSNP
rs1178844386 1315 dbSNP
rs1393145973 1316 dbSNP
rs1362686069 1318 dbSNP
rs993204042 1319 dbSNP
rs1400168044 1320 dbSNP
rs1426529087 1327 dbSNP
rs372306836 1342 dbSNP
rs917259189 1346 dbSNP
rs750971514 1349 dbSNP
rs546971385 1355 dbSNP
rs150534812 1356 dbSNP
rs1268640458 1360 dbSNP
rs909995851 1361 dbSNP
rs941489468 1364 dbSNP
rs139832860 1375 dbSNP
rs1033397746 1386 dbSNP
rs557131202 1395 dbSNP
rs191299808 1397 dbSNP
rs921484550 1398 dbSNP
rs1315845056 1411 dbSNP
rs934265909 1412 dbSNP
rs1443437148 1420 dbSNP
rs1051824276 1434 dbSNP
rs767202450 1446 dbSNP
rs536817521 1449 dbSNP
rs1369362618 1453 dbSNP
rs945732917 1461 dbSNP
rs949927398 1465 dbSNP
rs1041432160 1466 dbSNP
rs1303496140 1469 dbSNP
rs555277957 1470 dbSNP
rs1349491304 1476 dbSNP
rs143173954 1478 dbSNP
rs927054936 1479 dbSNP
rs1193692906 1480 dbSNP
rs1429187415 1481 dbSNP
rs200232036 1483 dbSNP
rs1478991689 1488 dbSNP
rs369933050 1489 dbSNP
rs1034154036 1490 dbSNP
rs752219321 1501 dbSNP
rs940358125 1506 dbSNP
rs1211614548 1508 dbSNP
rs894344046 1513 dbSNP
rs901420121 1518 dbSNP
rs1194261971 1531 dbSNP
rs56707429 1533 dbSNP
rs1479077848 1534 dbSNP
rs1214215664 1540 dbSNP
rs1024676212 1552 dbSNP
rs577525953 1553 dbSNP
rs1450518239 1555 dbSNP
rs1419025989 1556 dbSNP
rs1410765755 1557 dbSNP
rs1332670993 1559 dbSNP
rs1467599948 1564 dbSNP
rs889885582 1578 dbSNP
rs1000256990 1579 dbSNP
rs1427626410 1598 dbSNP
rs982803709 1604 dbSNP
rs1183143807 1605 dbSNP
rs185537725 1606 dbSNP
rs190460628 1610 dbSNP
rs1199213726 1614 dbSNP
rs1458988503 1619 dbSNP
rs777313601 1630 dbSNP
rs1203548411 1637 dbSNP
rs1188775386 1642 dbSNP
rs748930204 1645 dbSNP
rs531142346 1654 dbSNP
rs1244007198 1656 dbSNP
rs1382159350 1673 dbSNP
rs921441662 1684 dbSNP
rs971254391 1692 dbSNP
rs1449658223 1693 dbSNP
rs146651253 1697 dbSNP
rs757005321 1699 dbSNP
rs193054190 1702 dbSNP
rs1269099438 1705 dbSNP
rs373095129 1706 dbSNP
rs927106596 1708 dbSNP
rs945693463 1709 dbSNP
rs984978004 1710 dbSNP
rs1041377943 1716 dbSNP
rs1176450158 1729 dbSNP
rs1488705227 1730 dbSNP
rs907612211 1733 dbSNP
rs867652242 1743 dbSNP
rs1220554874 1751 dbSNP
rs1358912678 1752 dbSNP
rs745865390 1762 dbSNP
rs528774922 1766 dbSNP
rs904248171 1772 dbSNP
rs1242392144 1776 dbSNP
rs1334560331 1793 dbSNP
rs1039998278 1808 dbSNP
rs1387816003 1817 dbSNP
rs1333972260 1818 dbSNP
rs546939167 1821 dbSNP
rs1254862403 1822 dbSNP
rs1364563712 1833 dbSNP
rs771994623 1834 dbSNP
rs935754197 1835 dbSNP
rs1361519697 1841 dbSNP
rs1049939253 1843 dbSNP
rs1433647906 1845 dbSNP
rs1241610637 1846 dbSNP
rs185281541 1861 dbSNP
rs1197010483 1865 dbSNP
rs1490264894 1867 dbSNP
rs775588134 1868 dbSNP
rs1218939153 1880 dbSNP
rs1348669181 1888 dbSNP
rs1475861690 1889 dbSNP
rs1055507723 1893 dbSNP
rs747070061 1896 dbSNP
rs1314382994 1902 dbSNP
rs1014532576 1907 dbSNP
rs1281845185 1908 dbSNP
rs564283906 1914 dbSNP
rs1000355992 1920 dbSNP
rs533378867 1922 dbSNP
rs1461285441 1923 dbSNP
rs1004184983 1928 dbSNP
rs1016952643 1930 dbSNP
rs1393448675 1936 dbSNP
rs538632038 1940 dbSNP
rs1382163849 1943 dbSNP
rs1287711737 1945 dbSNP
rs1466549109 1950 dbSNP
rs975489886 1954 dbSNP
rs377295524 1956 dbSNP
rs891839020 1970 dbSNP
rs1479968817 1987 dbSNP
rs1424019448 1989 dbSNP
rs1010661412 1994 dbSNP
rs368746673 1997 dbSNP
rs1316930913 2000 dbSNP
rs971306839 2003 dbSNP
rs955551868 2006 dbSNP
rs115401209 2015 dbSNP
rs1034218063 2027 dbSNP
rs776753164 2031 dbSNP
rs762031745 2034 dbSNP
rs951918344 2035 dbSNP
rs765535810 2036 dbSNP
rs568994484 2040 dbSNP
rs1291112535 2041 dbSNP
rs1333846649 2051 dbSNP
rs1427987743 2055 dbSNP
rs907617671 2067 dbSNP
rs1396086561 2069 dbSNP
rs1177248728 2070 dbSNP
rs914129936 2071 dbSNP
rs1267018683 2074 dbSNP
rs1334645686 2084 dbSNP
rs1469184089 2091 dbSNP
rs1348383515 2092 dbSNP
rs1400777709 2102 dbSNP
rs976165474 2103 dbSNP
rs922906934 2104 dbSNP
rs1204484734 2109 dbSNP
rs1283630223 2110 dbSNP
rs927277515 2110 dbSNP
rs1050032660 2113 dbSNP
rs945639620 2116 dbSNP
rs536874923 2127 dbSNP
rs1196076538 2143 dbSNP
rs1255620039 2154 dbSNP
rs925618898 2164 dbSNP
rs935701657 2166 dbSNP
rs911469161 2169 dbSNP
rs1275632228 2173 dbSNP
rs936205578 2177 dbSNP
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rs1269199284 2189 dbSNP
rs915667901 2195 dbSNP
rs1189018242 2199 dbSNP
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rs891888781 2212 dbSNP
rs1377544510 2215 dbSNP
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rs1006111813 2503 dbSNP
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rs1247439671 2990 dbSNP
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rs981586529 2991 dbSNP
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rs958844760 2995 dbSNP
rs1453094354 2996 dbSNP
rs575272485 3000 dbSNP
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rs1384894813 3023 dbSNP
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rs333015 3159 dbSNP
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rs1287563525 3211 dbSNP
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rs775002501 3760 dbSNP
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rs1261860721 3883 dbSNP
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rs1277220265 4020 dbSNP
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rs1342051954 4141 dbSNP
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rs1009006951 4225 dbSNP
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rs1310868158 5260 dbSNP
rs897814642 5269 dbSNP
rs1260528084 5270 dbSNP
rs995746568 5271 dbSNP
rs1477298537 5299 dbSNP
rs1396369231 5304 dbSNP
rs1459789566 5305 dbSNP
rs993518976 5306 dbSNP
rs951078095 5307 dbSNP
rs1251968122 5320 dbSNP
rs1474667623 5320 dbSNP
rs1027715670 5324 dbSNP
rs1183670608 5328 dbSNP
rs1474178602 5333 dbSNP
rs986479817 5337 dbSNP
rs1272227539 5338 dbSNP
rs1349342459 5341 dbSNP
rs1458438808 5349 dbSNP
rs952237738 5354 dbSNP
rs1295388903 5357 dbSNP
rs1358210419 5358 dbSNP
rs1007688653 5362 dbSNP
rs556334597 5370 dbSNP
rs574833463 5379 dbSNP
rs963690673 5380 dbSNP
rs550373709 5383 dbSNP
rs540094128 5386 dbSNP
rs922170613 5391 dbSNP
rs968246769 5392 dbSNP
rs1324785642 5393 dbSNP
rs1389028739 5397 dbSNP
rs57092786 5399 dbSNP
rs572366304 5403 dbSNP
rs546163559 5409 dbSNP
rs1460630377 5413 dbSNP
rs766222481 5415 dbSNP
rs182382587 5423 dbSNP
rs1227070624 5424 dbSNP
rs759211923 5425 dbSNP
rs1312579887 5426 dbSNP
rs1322871304 5427 dbSNP
rs917942634 5435 dbSNP
rs1250965513 5438 dbSNP
rs1212807361 5440 dbSNP
rs201338110 5441 dbSNP
rs987780599 5442 dbSNP
rs751335170 5446 dbSNP
rs1246279167 5450 dbSNP
rs1275496029 5452 dbSNP
rs1236132353 5456 dbSNP
rs1369386444 5457 dbSNP
rs1283267885 5462 dbSNP
rs1325770018 5465 dbSNP
rs1436300878 5471 dbSNP
rs1391215700 5472 dbSNP
rs1487754765 5473 dbSNP
rs898369499 5485 dbSNP
rs946460130 5501 dbSNP
rs1398593519 5508 dbSNP
rs1406684670 5514 dbSNP
rs1172636160 5520 dbSNP
rs1478992840 5528 dbSNP
rs995361294 5530 dbSNP
rs1265033714 5532 dbSNP
rs1046903528 5534 dbSNP
rs886876195 5539 dbSNP
rs1213986825 5540 dbSNP
rs187051663 5560 dbSNP
rs926441738 5561 dbSNP
rs939193972 5574 dbSNP
rs1341707520 5576 dbSNP
rs1202275162 5579 dbSNP
rs1414383061 5579 dbSNP
rs141541178 5579 dbSNP
rs1425504474 5581 dbSNP
rs1303327038 5583 dbSNP
rs1056375340 5584 dbSNP
rs897762482 5593 dbSNP
rs754918508 5594 dbSNP
rs142383775 5597 dbSNP
rs1334357178 5603 dbSNP
rs887826380 5613 dbSNP
rs562683648 5616 dbSNP
rs529851922 5617 dbSNP
rs541778992 5622 dbSNP
rs560358991 5623 dbSNP
rs901990325 5627 dbSNP
rs997658342 5628 dbSNP
rs1184528480 5644 dbSNP
rs1474936960 5651 dbSNP
rs956854709 5657 dbSNP
rs527321102 5659 dbSNP
rs752532532 5661 dbSNP
rs146417156 5662 dbSNP
rs752726273 5662 dbSNP
rs1344911207 5671 dbSNP
rs987726517 5687 dbSNP
rs1022375650 5700 dbSNP
rs1380287552 5703 dbSNP
rs570259498 5707 dbSNP
rs1284439146 5708 dbSNP
rs1230597144 5711 dbSNP
rs967773676 5716 dbSNP
rs1352404790 5718 dbSNP
rs1311720645 5723 dbSNP
rs1430376293 5749 dbSNP
rs1240385217 5762 dbSNP
rs371447707 5763 dbSNP
rs980914813 5773 dbSNP
rs1310098430 5788 dbSNP
rs1409166340 5794 dbSNP
rs1414164356 5795 dbSNP
rs1209096732 5796 dbSNP
rs1474343037 5804 dbSNP
rs926414449 5814 dbSNP
rs1256966102 5820 dbSNP
rs939141844 5821 dbSNP
rs1182956391 5826 dbSNP
rs1484056331 5827 dbSNP
rs756266848 5830 dbSNP
rs992004643 5839 dbSNP
rs1204370587 5843 dbSNP
rs919138053 5844 dbSNP
rs929207543 5846 dbSNP
rs1049008235 5849 dbSNP
rs777941773 5850 dbSNP
rs1234800677 5856 dbSNP
rs943407256 5874 dbSNP
rs886970888 5877 dbSNP
rs1409927210 5878 dbSNP
rs1439118140 5880 dbSNP
rs112260569 5889 dbSNP
rs139001016 5890 dbSNP
rs901949789 5894 dbSNP
rs899546460 5895 dbSNP
rs1410361205 5897 dbSNP
rs749578787 5905 dbSNP
rs369309711 5912 dbSNP
rs1460111761 5915 dbSNP
rs1417456759 5917 dbSNP
rs536014146 5918 dbSNP
rs115377605 5919 dbSNP
rs1360165220 5921 dbSNP
rs1021685670 5923 dbSNP
rs757547590 5928 dbSNP
rs968393328 5931 dbSNP
rs779187344 5933 dbSNP
rs892002476 5945 dbSNP
rs1228547670 5952 dbSNP
rs1031203086 5953 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 154810.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_130847 | 3UTR | AAUAAGACAUAGCAGAAUUCCUUAGGUAUGGGAUUUAUGAGACCAGUACCUGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000317837.9 | 3UTR | AUUUUCCUCUCCUUUGCUGCUUAAACUUGUGCCUUAAUAUUGUACAUAAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000317837.9 | 3UTR | AUUUUCCUCUCCUUUGCUGCUUAAACUUGUGCCUUAAUAUUGUACAUAAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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