miRTarBase - #MIRT063354


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pre-miRNA Information
pre-miRNA hsa-mir-519c   
Genomic Coordinates chr19: 53686469 - 53686555
Description Homo sapiens miR-519c stem-loop
Comment The 5' arm of this precursor expresses a product related to miR-526 (previously named miR-526c here). Landgraf et al. confirm mature miRNA expression from both arms of the precursor .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-519c-3p
Sequence 54| AAAGUGCAUCUUUUUAGAGGAU |75
Evidence Experimental
Experiments Array-cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 19 + 53686523 29233923 MiREDiBase
A-to-I 3 19 + 53686524 29233923 MiREDiBase
A-to-I 8 19 + 53686529 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1164669230 4 dbSNP
rs764425172 8 dbSNP
rs1377433094 10 dbSNP
rs751997873 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ETNK1   
Synonyms EKI, EKI 1, EKI1, Nbla10396
Description ethanolamine kinase 1
Transcript NM_018638   
Other Transcripts NM_001039481   
Expression
Putative miRNA Targets on ETNK1
3'UTR of ETNK1
(miRNA target sites are highlighted)		 
>ETNK1|NM_018638|3'UTR
   1 AGAAGAGATTTAATTATTCTCCAGTAGCTGAGCAATGCTTGTGAATCTTTTCTTAAGAAATCCCAAAAAGCCAATATTAG
  81 TTAAAATTCTGTTGTTTAATTTGGTTATCTTGCTTTATAAATTATGCCTCTAAACAATCAAATCTATTTTTGAAATAGAC
 161 TGAATGATGTCAAGAAATATACCTACTGCTATCCGTATGTGGTGGATTAGAAATGTGTTAAATCTGCAAAAGGTATAAAG
 241 ATGTCAGTTTAATTTCTTTGATAATTTAACCTATGTTGTATGTGAATTATTTATTATAAACTTAGCACGATTCTGTGACT
 321 GTTTTTCTCTGTTTCACGTTCGTTGAGTGTAAGCAATGAAAATGTCCCAAATAAGTTTTTTAAGTTTTACTTTAATAAGA
 401 TTAATTTCAGTAAACATTCTAGTTGTTCAGTGTAACCTTTTTATCTTGATGCATTGTAAGTAAAATGAATCATTTACTCT
 481 TGAAATGCCAGTCATTGACTGATGTAGATAATTTAGGATTTTCATATAAAAATAGCTGTTTAGGAAGGTGAAATACATTC
 561 ACTGTCTCTGTTGGTGGTACATCTTGTTGAATTCAATATTAGAAAGTATTTCTTTTTGGGGTAATATAACTTAGAATTAA
 641 ATCCCTGTTTCTCTATGTAGTCTGGCAGTATAAATATAAATATTTACCATATAATCTTGGAATAAGTATTAGTTAATGTT
 721 ACCAAAATCTGTATTAAATAATGTTTTCAAATGCTAAATATGGTCGTTACTATTTTCAGTTTTAAAAATTTTATAGTATC
 801 AAATTGTTTCTAACCAAAAATTTCCTTTTACTTCTAGAGATGCTTTATGTTTTTGATTATTAAATAGTCACTAGTATTGC
 881 TAATTTTTGAAACAAATACACAAAATTTATCATATGTAGAAATAAGAAAATATTGTTTAGGTTAATTATTTTTTACCTAT
 961 CCAGAGTCATTCCTTACATTTCAGTTTCATGTTTCATTCCTCACATTTTAGTTTCATGTTTTAGTTTGATTCTATGTTTT
1041 TAGACTGATAGCAAATGATTACTTGATACATGTAAGTTCAGCGTTATATGTTGAGGCAGTTATATAATTAAATAAGGAAC
1121 ACTTAGGGCATTGATCTTGTACACTTAAAATCTGACAAATGACAAAATGTGAATTAAGCATAAATAGTCATGGCAGGAGG
1201 GCTTTTGTTTATTTCTCTTGTTTTTGTTTAACTGTATTTTTAATTTTGTCTGGTGGTAAGAGGGAGGTAATTATTGTATG
1281 GAAAGAAGTTAGATCTTTCAGATAGATAAATAGGCTTCAGGTTTTGAAGTCTGCTCTGTGTAGTTGAGCAGTCATGGTTA
1361 ACTTTACTTAGAAAATTAGTCTGACAAGCTTTGCACTTCGGTCACATAAGTGCCCATGTACAAAGTTGGCTTACTGGATC
1441 TGCATATTCAAAATATGCAACTACAAATTTATCCTCTGAGAAATCTTCTGAGGAGTCTAATGTATTCCAAATGACTTAAT
1521 ATTCTCAGACAAATGCTTTAAAATACTTGGATTATCTCAAGATTTTTGAAGCTAATAAAGTAAATAGAAACACAGGCCAT
1601 TTTAAATGGTAAATTCTAGTTACATAAATATAATCTTAAAGTATGTTTGTATCTGTAACAGTGTTAGACCAGATTTGGTT
1681 TCTACCTCCCCAATGTTATAAATGTTCACTTTTGTTTTTATAAACCATATTACTGTAAGATCAATAGAACTTTGCCTAGT
1761 TAAGTGAATGGAACCAATTAAACAACTAGTAGCTTTTTATAATGTTAGTGTGAACTTGAAAAATTGTTTTTGGTGGAATT
1841 TTTGTCTGTGGTTAGAACATTTTCATAAAACAGATAAAGAATGTGTAATACTCTTAATTTTTTTTTTTTTTTTTTTTTTT
1921 TTTTTGCTTTCTGCCTTCTAAAGTGCAACAGTATATATCTTGTAGAACTGTGGGAGGAGAGAAGATAATTTTTCTACCTT
2001 ACTCCATATTCTTACTTCAAACTATTTTGAATAGAGGTTCACTGAGCCATTGCTGATAGACTGTGCATAGCTACTAGCTG
2081 TCACACTATTGTAGGTTTTTTGGAGAGATTCATAGGGAAGTGAATGTAACCAGGAATAAAGGCTCTCACTTTAGCTCTGG
2161 GACTATGCAGTGGATCTTGGGAACAAAATAAGATATCTAATCTATTTTCCCCATTCTGGCTAGATTTTGGTTGTTGTGAT
2241 GCTCCTACTTCCTGTATAGGTTTTTGGGATCATGGTGCAGGCTAGTAATAGGATTCAGAATTGCTTCCCTTTTATATCGA
2321 CCATGTAAGGGATTCTAAAGGAGGGTAAATCTCAAAGTGCTCTGAAATCATCCCTCTAAAATCTGTCCTGTGGTGTGCTA
2401 AGATGTCTGTTGCCTTTTTATGTTAAGCTAAGGAACTTGAATGCCTTACCTAATAACTCAACTAGTAGTAAGCTCATTTT
2481 GTAAATATGAAAATGGCTGTAAGAAGTGGCATTCATGTATATTCAATGTTAGTCAATAGACCATAGTGGCCTGGATGCTT
2561 TAACAAGCCAAATTCCGCAATTTTTTTTCCTTTTTTCCCCTTCATACTTGTATGATCTCACCTGACCAGTGATTTCTTTT
2641 CCTCCTAACCCCATGCTACCACCATTTTCTGGAAATCAAAGAGATGTGGTAGTAAATCATACAGTACACACGATCATCTG
2721 AGATCAATATGAGCACAAAACTCATCAAGTAGGTCTGCCTGGAATGTATATAAAAAATGTAAATAAAAATTTGTAAATTA
2801 GTGTGAACTGTATCTTGCATATGAGACTGTGTATTGTTTTGCATTCTCTTCCCTTTTGTAGAAATTTTTCTGTAAGGAAA
2881 TGATTCAGCTTGTTGGTTTTAGAGTAAAAATAGCCAACAGTTGTGGCTACACAGTGAGATCACAGGAACTGGAAATAGGG
2961 TTTGTCGGCTTTGGTTAATGTCAGTACTCATTTATTTAGCCTCTCAGTGCTTAATAAGACTTTTCTTTATTTTTTAGTTA
3041 GCCGTTAGGTTTTGTGAGGTTAGATTCCTGGAAGCAGTGAATTTATACACTGTTATATTAATAGAGCTCCGTTCTTTGAG
3121 TCATGATTCCAAGCTAAAGGAAATTAAAAATGTAATTTAATAATTTCCTATTTTTAGGGTTGTTAATTTTTTTCTACAAA
3201 AAAACCTTGAAATTTTAGATATCCCAATGTGAATCTAATTTCCATATATACAGAAATTAGACAAATAATAAGTCTTTAGT
3281 TCAACTTAAGCATATCTCAAATGACTTCTCTAAATTTAAAGTTGATCATGATAGGATCATAAAAGACAGAAAAGACTTAA
3361 GTAATCTTGTAATGACAATTATTTCCATTTTTGCTGAACTAAAAATATTTAACTTCATAAATATGTTACTACAGCTTCCA
3441 GATTTAAAGAAAAAAAGTTTCCCCCACTCTCAATTAAAAGTTAGAACCCTCCACTTTTAAAATTATACAAATATTTCTTT
3521 TTTACATTACACAGAAGCCTTCTGTACCATTTTACGAATTTCTGTCTTCATAATATAAGTGAAAATACTGTCATTTCAAT
3601 TTTCTGCTTTAAATTGTTTTTAATAAGCATTCCAAAGTGATACAGACTTAAGCTTTTAATCAATCAGTCATTCAGTTGAT
3681 AGACAAAGTTAGCGATGCTTTATGCTAGGAAACTTGTTGACAGTAACCTGTGCGACTTTATGCAGAAGACAAATGCTAGT
3761 AATTATTATGCACAGAGGAAAAATCATTTTAAGTATGTGGTAAAGCAGCTTCATCTTTCAAAATTGATTTGCTCTGGTTT
3841 TTCTTTAGTCCATTAGATTCCAGAATGTCCTTTTACTGGGAATTTAGTTATGTATTAAGATAACCTGTTTTCAGTTCTTT
3921 TTGAAAAGAAGACATTATTTATATTGAACCACCTTATTTTAAAATTTTTAACTTTTATATACCACTTGTGTGATTCCAGT
4001 GTCATGTCTTGGGTTTGATGTCGTTGGACAGAAAAGTGTATCAATTATTTTAAATGAATTTTTCCCCATGTTTGAGGCTT
4081 AGTCTGTAAATGTGTTGCTGTAACAGAAAATACTTGGGTATGCATTACTTGAATACTTGAAAACTGAAATTAATAAGATG
4161 TATTACATAATGAATTAGATTTCTCTGAACAGTTTTTACACTGAAAATCTTCATTTCTGGATTGCAGTTTGAAATGGAAT
4241 GAAGACCTGAATTATTTGGGTAGAAAAAATTATGATAGTGCTTATAAGAACTGTAAACTGTTTTAAACTATTTTGTGTTT
4321 GACGCATCAAACTTCAAGTTTTTTGTAAGTTTCTCTCCTGAAATTTTCTTTCTCTTCTATACTTTATGCACTTACTATAC
4401 TACTGATGTAATAAAAGAGCAGGGTTAAAAATATTGTATCTGTATTCATTGTGAATCCTGTAGCTTTTCTAGTTAACAAA
4481 AAATCGCTTTCTAAAATACTCTTAATCCCATTGTTTTGGTTAACATCTTACCCATTTGTTGTATTTCAAATGCCATTAAT
4561 CATTTTAGTACAACACCTATGTTTATAAAAATTTGAAAACATTACATATTGTATTTAAAACTAATTAGTGAAGAGTAAGA
4641 AAAAAACTAGCCAACAGAATTGTAGGTGATGCATTAGTTAAATTTCAAAACTCATAATAAAGGAACTTTCAGAGATTGGT
4721 TGAAACCCAGTGGTATCCCTGTAAATTAGCTCCTGTGACTGGAAAAGACCCCAAAAAGGCAGTAGAGGAGATTAGTGTTT
4801 ACTTGCTGTGGTTGTGGTGTGCTGCTACTTAATTATAGGTAGTGACACACTGAAATTCTTATTTGTCCAATAATCTGAAG
4881 TAGTTTCCTATATTTATCTGTACTAAATTGACTATAAATTGAGTCTGCAAAGAGGAAACTTTTTGACTGTACTGTATTTA
4961 GGAGCCTTTGTACAGCTTGGTCAAATTTCCATGATATGAAGTATTTGAGTTTTAAAATATACTGTTATTAAAAGGAAAAA
5041 GACATGGCCATTATTCCATGTGCTTAAATGATAATTTCCTTATTCAGTTTCAGAAGAAAAAGAATGAAATTGGGTAACTG
5121 TCATTGCGTTAGCTTTATGTTGAATTGGGAAATTGTGGCATAAAGCTTAAATTCGTGTTTATCAAATGTGAACCATAGTA
5201 GTATAATGCTGCTTTGTATATAATGTAAGTGCTACAAATAGTCTCAGCACTGAAAATGTATTGATACCTCTTAAATGAAT
5281 GCAACTTTTGATGTAGGTGTTTTGCTATGCCTCAGAAAATATCTGTCTGAGAATTTGTTAATCTGTTTGATAATGAAGAT
5361 ACTTCCTGTTTTCTTGTTTCATATTTTCATGTTCAAAATTTAAGTTTTACATTTTTACTACTGTTAATTTAAATAAAATT
5441 TGTTCTGTGGATAAAATGAGGTTGGCAGTGAAGAAAATTAAAAACAGCCTCATTCATGTAACTGGTTAAGTAAAAATACA
5521 TTTTCACTATGTGTTCATAAACTTTTAATGAAGCTGTTTGTCTTTCAGTTCAAATATAAGTGATGTTTAGGCTTTATTTC
5601 TGTTAATAAGGCTTTTTACCATTGATTAAATGAAGGAATGTATCTTTTTGAAGAGATTTATATTCTGTAAATAAAAATTC
5681 GTTGTAACAATAAAGTTGAGTTCTAACTACAGTGTATTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaggAGAUUUUUC--UACGUGAAa 5'
              |||:| |||   ||||||| 
Target 5' ttagTCTGACAAGCTTTGCACTTc 3'
 1376 - 1399 160.00 -12.30
2 
miRNA  3' uaGGAGAU-UUUUCUACGUGAAa 5'
            |:|||| |    |||||||| 
Target 5' ctCTTCTATACTTTATGCACTTa 3'
 4372 - 4394 156.00 -13.90
3 
miRNA  3' uaGGAGAUUUUUC-UACG-UGAAa 5'
            ||||| ||| | |||| |||| 
Target 5' taCCTCTTAAATGAATGCAACTTt 3'
 5265 - 5288 144.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31479638 6 COSMIC
COSN30479925 23 COSMIC
COSN31497651 27 COSMIC
COSN30466250 53 COSMIC
COSN24312772 58 COSMIC
COSN30474220 64 COSMIC
COSN30158886 98 COSMIC
COSN1146256 108 COSMIC
COSN19646404 109 COSMIC
COSN26175414 140 COSMIC
COSN30167621 149 COSMIC
COSN7322721 279 COSMIC
COSN1146257 329 COSMIC
COSN20092536 381 COSMIC
COSN16449994 736 COSMIC
COSN20109339 800 COSMIC
COSN7612998 1035 COSMIC
COSN4701929 1091 COSMIC
COSN30544896 1096 COSMIC
COSN30545022 1117 COSMIC
COSN31519152 1150 COSMIC
COSN30545029 1162 COSMIC
COSN31542043 1197 COSMIC
COSN30541165 1240 COSMIC
COSN31522321 1257 COSMIC
COSN22711525 1265 COSMIC
COSN31480830 1332 COSMIC
COSN30545027 1481 COSMIC
COSN31515377 1542 COSMIC
COSN28111783 1569 COSMIC
COSN31593982 1615 COSMIC
COSN31547662 1636 COSMIC
COSN30159367 1711 COSMIC
COSN31585329 1748 COSMIC
COSN19501468 1844 COSMIC
COSN15677893 1988 COSMIC
COSN25789434 2053 COSMIC
COSN1567314 2107 COSMIC
COSN26349263 2332 COSMIC
COSN31563726 2450 COSMIC
COSN31588386 2555 COSMIC
COSN31565665 2565 COSMIC
COSN22807082 2589 COSMIC
COSN26808666 2705 COSMIC
COSN27685454 2764 COSMIC
COSN31541269 2804 COSMIC
COSN31539166 2825 COSMIC
COSN8585873 2869 COSMIC
COSN31881820 2881 COSMIC
COSN20092537 2984 COSMIC
COSN5938735 3308 COSMIC
COSN8705943 3519 COSMIC
COSN31546818 3660 COSMIC
COSN25401860 3979 COSMIC
COSN25398957 4025 COSMIC
COSN7322722 4354 COSMIC
COSN20617071 4357 COSMIC
COSN22386145 4380 COSMIC
COSN27159974 4674 COSMIC
COSN25929220 4788 COSMIC
COSN20092538 4853 COSMIC
COSN7322723 4895 COSMIC
COSN31523679 4999 COSMIC
COSN31567741 5018 COSMIC
COSN31588109 5055 COSMIC
COSN31563727 5151 COSMIC
COSN21090763 5175 COSMIC
COSN31549270 5238 COSMIC
COSN30540805 5278 COSMIC
COSN31565944 5332 COSMIC
COSN20092539 5362 COSMIC
COSN31568879 5542 COSMIC
COSN31606781 5614 COSMIC
COSN31607870 5638 COSMIC
COSN28633573 5661 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1231807419 5 dbSNP
rs1309931478 7 dbSNP
rs377113417 11 dbSNP
rs539842901 22 dbSNP
rs1327869403 25 dbSNP
rs1360800265 26 dbSNP
rs181367012 28 dbSNP
rs1352799615 31 dbSNP
rs1435336407 32 dbSNP
rs1364976306 34 dbSNP
rs1318905779 35 dbSNP
rs781436816 35 dbSNP
rs745969645 39 dbSNP
rs1381372265 42 dbSNP
rs1285156741 43 dbSNP
rs369665317 44 dbSNP
rs1224722581 45 dbSNP
rs780747349 46 dbSNP
rs749812731 48 dbSNP
rs535450267 52 dbSNP
rs779162414 53 dbSNP
rs987525040 55 dbSNP
rs1464663973 64 dbSNP
rs929561018 67 dbSNP
rs1169515559 75 dbSNP
rs12316161 79 dbSNP
rs778414521 80 dbSNP
rs138515741 81 dbSNP
rs541295954 111 dbSNP
rs1256865117 113 dbSNP
rs920055279 128 dbSNP
rs1482017491 136 dbSNP
rs1421118890 139 dbSNP
rs1012913763 161 dbSNP
rs931416035 166 dbSNP
rs1228725794 179 dbSNP
rs1340958202 182 dbSNP
rs1295876506 183 dbSNP
rs1247354691 187 dbSNP
rs771061531 192 dbSNP
rs186999399 195 dbSNP
rs908618360 196 dbSNP
rs1462377604 206 dbSNP
rs1394775711 218 dbSNP
rs377529341 222 dbSNP
rs577431418 223 dbSNP
rs1372528867 231 dbSNP
rs1308665480 240 dbSNP
rs1429365661 242 dbSNP
rs1388485359 243 dbSNP
rs938717813 246 dbSNP
rs1002923339 248 dbSNP
rs1035275354 249 dbSNP
rs1057440639 267 dbSNP
rs1368808213 271 dbSNP
rs956541399 274 dbSNP
rs771257770 279 dbSNP
rs543185232 283 dbSNP
rs988489248 287 dbSNP
rs1205176776 291 dbSNP
rs1022201900 294 dbSNP
rs1310525737 297 dbSNP
rs894402397 305 dbSNP
rs562651938 306 dbSNP
rs1357549289 311 dbSNP
rs1283938473 316 dbSNP
rs967722806 326 dbSNP
rs1042931612 328 dbSNP
rs776629924 330 dbSNP
rs985759472 338 dbSNP
rs759772817 339 dbSNP
rs1368778358 342 dbSNP
rs1325834377 343 dbSNP
rs1406139380 348 dbSNP
rs998675868 349 dbSNP
rs1162384720 368 dbSNP
rs1459821107 372 dbSNP
rs141163915 374 dbSNP
rs890200438 375 dbSNP
rs919438321 377 dbSNP
rs770047319 381 dbSNP
rs548340922 382 dbSNP
rs1017654030 385 dbSNP
rs1230650923 392 dbSNP
rs929477192 393 dbSNP
rs1049812344 396 dbSNP
rs1451777649 396 dbSNP
rs964329200 403 dbSNP
rs1331660800 405 dbSNP
rs374911721 411 dbSNP
rs370988717 414 dbSNP
rs1456431021 417 dbSNP
rs34490298 423 dbSNP
rs975613355 426 dbSNP
rs1027122605 427 dbSNP
rs1276651657 430 dbSNP
rs776159273 431 dbSNP
rs952909333 432 dbSNP
rs982892841 433 dbSNP
rs1330681583 435 dbSNP
rs1322657062 440 dbSNP
rs1180359514 452 dbSNP
rs1459740011 453 dbSNP
rs1044422855 467 dbSNP
rs1413404102 469 dbSNP
rs1159874570 471 dbSNP
rs1456608680 474 dbSNP
rs1475559250 480 dbSNP
rs1405200764 489 dbSNP
rs562093001 505 dbSNP
rs960390450 506 dbSNP
rs528011316 509 dbSNP
rs1191349837 512 dbSNP
rs548087781 525 dbSNP
rs1002974039 534 dbSNP
rs915875825 536 dbSNP
rs1208685579 555 dbSNP
rs948680761 558 dbSNP
rs746134393 565 dbSNP
rs1043025348 575 dbSNP
rs925843038 581 dbSNP
rs1344392241 582 dbSNP
rs1356679072 583 dbSNP
rs191738259 586 dbSNP
rs577984988 597 dbSNP
rs560095587 603 dbSNP
rs890219109 613 dbSNP
rs967943380 625 dbSNP
rs1434306438 627 dbSNP
rs1343295923 629 dbSNP
rs1354497555 638 dbSNP
rs1009023074 652 dbSNP
rs1233345707 658 dbSNP
rs1336090323 662 dbSNP
rs1382005611 669 dbSNP
rs1414603754 671 dbSNP
rs1423834031 673 dbSNP
rs1171408882 675 dbSNP
rs1450901809 677 dbSNP
rs540044656 689 dbSNP
rs1391194255 690 dbSNP
rs1038715221 707 dbSNP
rs1485180056 709 dbSNP
rs550354530 718 dbSNP
rs184027698 719 dbSNP
rs994446893 730 dbSNP
rs1217968955 734 dbSNP
rs375195492 766 dbSNP
rs761731500 767 dbSNP
rs976265388 773 dbSNP
rs1237116185 776 dbSNP
rs752184013 784 dbSNP
rs72185722 798 dbSNP
rs866000936 801 dbSNP
rs1016139385 812 dbSNP
rs1213845943 815 dbSNP
rs569804942 826 dbSNP
rs1285938869 834 dbSNP
rs1448635894 855 dbSNP
rs1374354206 856 dbSNP
rs1261132895 861 dbSNP
rs535539618 864 dbSNP
rs12317915 869 dbSNP
rs1370721510 875 dbSNP
rs984978454 879 dbSNP
rs1169026813 884 dbSNP
rs1422337809 892 dbSNP
rs1416381852 894 dbSNP
rs1182993419 896 dbSNP
rs1413094623 902 dbSNP
rs1472732071 912 dbSNP
rs1255515375 913 dbSNP
rs1175862323 942 dbSNP
rs970070441 956 dbSNP
rs909345089 962 dbSNP
rs750385766 964 dbSNP
rs978756486 968 dbSNP
rs1415019264 972 dbSNP
rs1314560665 974 dbSNP
rs1044643184 979 dbSNP
rs928641450 980 dbSNP
rs1411194128 998 dbSNP
rs938653635 1016 dbSNP
rs571990797 1028 dbSNP
rs925895227 1030 dbSNP
rs1352015566 1032 dbSNP
rs1165867200 1033 dbSNP
rs934530879 1035 dbSNP
rs1337805632 1036 dbSNP
rs1472988582 1044 dbSNP
rs1175732514 1046 dbSNP
rs891877999 1049 dbSNP
rs1267010831 1050 dbSNP
rs534286908 1053 dbSNP
rs1333885197 1055 dbSNP
rs1271255050 1061 dbSNP
rs1230125068 1063 dbSNP
rs1012037447 1069 dbSNP
rs558053532 1070 dbSNP
rs944484948 1072 dbSNP
rs1043575721 1077 dbSNP
rs903668419 1082 dbSNP
rs1369211228 1083 dbSNP
rs1007450297 1084 dbSNP
rs1440714014 1085 dbSNP
rs1017456829 1088 dbSNP
rs764018312 1096 dbSNP
rs1363326975 1098 dbSNP
rs577467868 1104 dbSNP
rs552262168 1105 dbSNP
rs900229748 1108 dbSNP
rs751432540 1114 dbSNP
rs1268404567 1115 dbSNP
rs950503151 1120 dbSNP
rs1048704068 1127 dbSNP
rs1467904127 1129 dbSNP
rs556735408 1137 dbSNP
rs187364222 1149 dbSNP
rs1016457595 1165 dbSNP
rs1329721955 1169 dbSNP
rs1283916448 1171 dbSNP
rs1236169789 1174 dbSNP
rs1487992185 1188 dbSNP
rs542294325 1189 dbSNP
rs1301605646 1197 dbSNP
rs201147670 1199 dbSNP
rs749728658 1204 dbSNP
rs1369283683 1208 dbSNP
rs1322911133 1211 dbSNP
rs970193084 1231 dbSNP
rs1244320389 1233 dbSNP
rs980377185 1237 dbSNP
rs1004400410 1241 dbSNP
rs1477332608 1249 dbSNP
rs1467701636 1253 dbSNP
rs1190903751 1255 dbSNP
rs1378250828 1257 dbSNP
rs1173287581 1261 dbSNP
rs1452763427 1262 dbSNP
rs1396097501 1264 dbSNP
rs1434898560 1266 dbSNP
rs562008074 1277 dbSNP
rs1393057828 1290 dbSNP
rs928865824 1300 dbSNP
rs368140470 1303 dbSNP
rs1483971441 1310 dbSNP
rs1256032796 1311 dbSNP
rs988831737 1317 dbSNP
rs913191925 1321 dbSNP
rs1300277520 1337 dbSNP
rs1015778390 1350 dbSNP
rs1043100183 1355 dbSNP
rs1294117824 1361 dbSNP
rs903720846 1366 dbSNP
rs1403037483 1374 dbSNP
rs1312293968 1384 dbSNP
rs960516880 1389 dbSNP
rs1014409026 1390 dbSNP
rs1328070452 1395 dbSNP
rs943197527 1400 dbSNP
rs1475651086 1401 dbSNP
rs527708735 1407 dbSNP
rs541021922 1410 dbSNP
rs1425437136 1422 dbSNP
rs1023510470 1424 dbSNP
rs997808970 1426 dbSNP
rs1025990629 1427 dbSNP
rs1276410310 1439 dbSNP
rs1302365930 1445 dbSNP
rs1339180259 1453 dbSNP
rs545670617 1460 dbSNP
rs1249933311 1463 dbSNP
rs886078589 1467 dbSNP
rs12312458 1477 dbSNP
rs368508362 1481 dbSNP
rs1341529154 1484 dbSNP
rs753350750 1496 dbSNP
rs774323107 1500 dbSNP
rs1352396761 1501 dbSNP
rs1032972469 1503 dbSNP
rs1236286212 1505 dbSNP
rs955958070 1522 dbSNP
rs1350321049 1540 dbSNP
rs1165880133 1546 dbSNP
rs1459388538 1561 dbSNP
rs754515271 1575 dbSNP
rs200138533 1584 dbSNP
rs1473969705 1597 dbSNP
rs1253303585 1598 dbSNP
rs1182114983 1599 dbSNP
rs1436811198 1608 dbSNP
rs778750102 1618 dbSNP
rs1286431476 1620 dbSNP
rs1450349346 1622 dbSNP
rs1221502935 1624 dbSNP
rs1016007130 1625 dbSNP
rs11046535 1631 dbSNP
rs764190513 1632 dbSNP
rs1331356334 1634 dbSNP
rs911799023 1634 dbSNP
rs1035823971 1635 dbSNP
rs757017372 1671 dbSNP
rs141532899 1688 dbSNP
rs1441769769 1690 dbSNP
rs754014240 1691 dbSNP
rs1378084693 1693 dbSNP
rs74068270 1694 dbSNP
rs758857992 1696 dbSNP
rs989440467 1703 dbSNP
rs1158574752 1708 dbSNP
rs974597640 1709 dbSNP
rs1386539837 1713 dbSNP
rs1469309474 1730 dbSNP
rs921718605 1742 dbSNP
rs1230888272 1746 dbSNP
rs1325116758 1751 dbSNP
rs913251041 1758 dbSNP
rs947357839 1768 dbSNP
rs1212392882 1771 dbSNP
rs930360022 1780 dbSNP
rs1306820461 1786 dbSNP
rs189725623 1798 dbSNP
rs1223360179 1811 dbSNP
rs1348618696 1814 dbSNP
rs886079022 1817 dbSNP
rs570239071 1830 dbSNP
rs1235264079 1831 dbSNP
rs1371498992 1848 dbSNP
rs2129613 1849 dbSNP
rs896067465 1854 dbSNP
rs942748149 1858 dbSNP
rs1014870983 1859 dbSNP
rs549076289 1866 dbSNP
rs1274349775 1868 dbSNP
rs1405131630 1871 dbSNP
rs773841031 1872 dbSNP
rs1454410916 1875 dbSNP
rs1197078861 1876 dbSNP
rs1394872625 1880 dbSNP
rs755194709 1881 dbSNP
rs1192069391 1888 dbSNP
rs1451715104 1892 dbSNP
rs1243261646 1894 dbSNP
rs1215683099 1896 dbSNP
rs1023100252 1897 dbSNP
rs1171351307 1898 dbSNP
rs1186480006 1898 dbSNP
rs1188660348 1898 dbSNP
rs1207533710 1898 dbSNP
rs1239296588 1898 dbSNP
rs1278527880 1898 dbSNP
rs1309078422 1898 dbSNP
rs1335554369 1898 dbSNP
rs1342955681 1898 dbSNP
rs1374545665 1898 dbSNP
rs1392103093 1898 dbSNP
rs1420632484 1898 dbSNP
rs1429897083 1898 dbSNP
rs1434955845 1898 dbSNP
rs1451779327 1898 dbSNP
rs1474683475 1898 dbSNP
rs1485381301 1898 dbSNP
rs3983448 1898 dbSNP
rs577546967 1898 dbSNP
rs5796967 1898 dbSNP
rs905949924 1899 dbSNP
rs1273395931 1900 dbSNP
rs1436825675 1900 dbSNP
rs1213932673 1902 dbSNP
rs1359699667 1905 dbSNP
rs1000256957 1912 dbSNP
rs1414929819 1925 dbSNP
rs1491331990 1925 dbSNP
rs1354248901 1926 dbSNP
rs1420971795 1926 dbSNP
rs1452591374 1927 dbSNP
rs1171705216 1928 dbSNP
rs1033023149 1930 dbSNP
rs1365235096 1930 dbSNP
rs1471506894 1931 dbSNP
rs956054550 1932 dbSNP
rs765953812 1933 dbSNP
rs1418472878 1934 dbSNP
rs1462949108 1939 dbSNP
rs1328990981 1941 dbSNP
rs1170113543 1950 dbSNP
rs1395531369 1952 dbSNP
rs372570437 1956 dbSNP
rs1019316522 1958 dbSNP
rs965978890 1963 dbSNP
rs1255451057 1965 dbSNP
rs11046536 1966 dbSNP
rs138002691 1971 dbSNP
rs1481053580 1975 dbSNP
rs561565726 1990 dbSNP
rs1233248723 1994 dbSNP
rs1203646352 1995 dbSNP
rs1016062372 1998 dbSNP
rs1275027624 2001 dbSNP
rs113726303 2007 dbSNP
rs182376718 2011 dbSNP
rs930410764 2012 dbSNP
rs1333566016 2021 dbSNP
rs1392783105 2033 dbSNP
rs771375399 2033 dbSNP
rs867198687 2036 dbSNP
rs571255044 2037 dbSNP
rs1337501078 2049 dbSNP
rs1440534040 2056 dbSNP
rs1217371018 2057 dbSNP
rs907615061 2064 dbSNP
rs940393100 2067 dbSNP
rs536926706 2072 dbSNP
rs1035875302 2073 dbSNP
rs1056126322 2087 dbSNP
rs556774121 2089 dbSNP
rs960460991 2091 dbSNP
rs896064033 2093 dbSNP
rs1419744221 2094 dbSNP
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rs138138439 2097 dbSNP
rs573518527 2102 dbSNP
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rs1479561140 2106 dbSNP
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rs963188369 2114 dbSNP
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rs918231139 5621 dbSNP
rs546703845 5633 dbSNP
rs923912543 5634 dbSNP
rs1437714786 5638 dbSNP
rs1305464237 5639 dbSNP
rs958130439 5639 dbSNP
rs1368277487 5641 dbSNP
rs1233156118 5644 dbSNP
rs1301595597 5645 dbSNP
rs1359120295 5653 dbSNP
rs1313577761 5670 dbSNP
rs929618337 5672 dbSNP
rs530900742 5673 dbSNP
rs879541522 5680 dbSNP
rs914433980 5681 dbSNP
rs779072258 5682 dbSNP
rs867383693 5685 dbSNP
rs750553462 5689 dbSNP
rs1250931271 5690 dbSNP
rs1384330080 5693 dbSNP
rs1055266441 5701 dbSNP
rs1441398398 5706 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 55500.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uaGGAGAU-UUUUCUACGUGAAa 5'
            |:|||| |    |||||||| 
Target 5' cuCUUCUAUACUUUAUGCACUUa 3'
 		12 - 34
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018638 | 3UTR | CUCUUCUAUACUUUAUGCACUUACUAUACUACUGAUGUAAUAAAAGAGCAGGGUUAAAAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_018638 | 3UTR | UCUAUACUUUAUGCACUUACUAUACUACUGAUGUAAUAAAAGAGCAGGGUUAAAAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_018638 | 3UTR | UCUUCUAUACUUUAUGCACUUACUAUACUACUGAUGUAAUAAAAGAGCAGGGUUAAAAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_018638 | 3UTR | UACUUUAUGCACUUACUAUACUACUGAUGUAAUAAAAGAGCAGGGUUAAAAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_018638 | 3UTR | AUGCACUUACUAUACUACUGAUGUAAUAAAAGAGCAGGGUUAAAAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_018638 | 3UTR | UUCUAUACUUUAUGCACUUACUAUACUACUGAUGUAAUAAAAGAGCAGGGUUAAAAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000266517.4 | 3UTR | AAAUUUUCUUUCUCUUCUAUACUUUAUGCACUUACUAUACUACUGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE17306 Multiple myeloma -0.301 1.8e-2 0.415 1.5e-3 49 Click to see details
GSE21849 B cell lymphoma -0.319 4.6e-2 -0.238 1.1e-1 29 Click to see details
GSE19350 CNS germ cell tumors -0.448 7.2e-2 -0.306 1.7e-1 12 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.559 7.5e-2 0.571 7.0e-2 8 Click to see details
GSE17498 Multiple myeloma -0.217 8.9e-2 -0.165 1.5e-1 40 Click to see details
GSE26953 Aortic valvular endothelial cells -0.274 9.8e-2 -0.160 2.3e-1 24 Click to see details
GSE28260 Renal cortex and medulla 0.38 1.0e-1 0.379 1.0e-1 13 Click to see details
GSE28544 Breast cancer -0.246 1.2e-1 -0.245 1.2e-1 24 Click to see details
GSE32688 Pancreatic cancer -0.186 1.5e-1 -0.107 2.8e-1 32 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.164 2.2e-1 0.076 3.6e-1 25 Click to see details
GSE38226 Liver fibrosis -0.154 2.5e-1 -0.605 1.8e-3 21 Click to see details
GSE14794 Lymphoblastoid cells 0.06 2.9e-1 0.022 4.2e-1 90 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.114 3.2e-1 -0.307 9.4e-2 20 Click to see details
GSE42095 Differentiated embryonic stem cells -0.079 3.6e-1 -0.336 5.8e-2 23 Click to see details
GSE27834 Pluripotent stem cells 0.076 3.9e-1 -0.071 4.0e-1 16 Click to see details
GSE21687 Ependynoma primary tumors -0.009 4.7e-1 -0.082 2.6e-1 64 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.008 4.8e-1 0.447 1.3e-2 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.649 0.18 0.800 0.1 4 Click to see details
BRCA 0.272 0.33 -0.100 0.44 5 Click to see details
HNSC -0.484 0.34 -0.500 0.33 3 Click to see details
HNSC -0.484 0.34 -0.500 0.33 3 Click to see details
HNSC -0.484 0.34 -0.500 0.33 3 Click to see details
HNSC -0.484 0.34 -0.500 0.33 3 Click to see details
325 hsa-miR-519c-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000496 HIF1A hypoxia inducible factor 1 alpha subunit 4 1
MIRT000998 ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) 4 3
MIRT003732 ELAVL1 ELAV like RNA binding protein 1 3 1
MIRT006639 TIMP2 TIMP metallopeptidase inhibitor 2 3 1
MIRT006640 PTEN phosphatase and tensin homolog 3 1
MIRT006641 CDKN1A cyclin dependent kinase inhibitor 1A 3 1
MIRT055028 TPRG1L tumor protein p63 regulated 1 like 2 2
MIRT055393 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT056828 REEP3 receptor accessory protein 3 2 2
MIRT060504 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT061796 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 10
MIRT063354 ETNK1 ethanolamine kinase 1 2 2
MIRT064424 ARID4B AT-rich interaction domain 4B 2 2
MIRT064719 CCND2 cyclin D2 2 2
MIRT064805 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT065609 DAZAP2 DAZ associated protein 2 2 10
MIRT065622 CLIC4 chloride intracellular channel 4 2 4
MIRT065872 GDF11 growth differentiation factor 11 2 2
MIRT065892 RAB5B RAB5B, member RAS oncogene family 2 8
MIRT068751 RB1 RB transcriptional corepressor 1 2 2
MIRT070050 FANCM Fanconi anemia complementation group M 2 2
MIRT071004 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT071334 CMPK1 cytidine/uridine monophosphate kinase 1 2 6
MIRT071912 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT072732 GLCE glucuronic acid epimerase 2 2
MIRT076028 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 6
MIRT076046 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT079353 CCDC137 coiled-coil domain containing 137 2 2
MIRT080227 SMAD4 SMAD family member 4 2 6
MIRT081122 LDLR low density lipoprotein receptor 2 8
MIRT081205 MIDN midnolin 2 10
MIRT085098 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT085149 SLC5A3 solute carrier family 5 member 3 2 4
MIRT086436 NABP1 nucleic acid binding protein 1 2 6
MIRT088037 UBXN2A UBX domain protein 2A 2 2
MIRT088132 SEPT2 septin 2 2 4
MIRT088343 MAPRE3 microtubule associated protein RP/EB family member 3 2 8
MIRT090645 U2SURP U2 snRNP associated SURP domain containing 2 6
MIRT090805 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT091692 TGFBR2 transforming growth factor beta receptor 2 2 4
MIRT092689 C3ORF38 chromosome 3 open reading frame 38 2 8
MIRT093954 SLAIN2 SLAIN motif family member 2 2 2
MIRT095727 ANKH ANKH inorganic pyrophosphate transport regulator 2 8
MIRT097158 FCHO2 FCH domain only 2 2 2
MIRT099319 QKI QKI, KH domain containing RNA binding 2 4
MIRT099835 SOX4 SRY-box 4 2 10
MIRT100773 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT100955 CENPQ centromere protein Q 2 4
MIRT102229 HBP1 HMG-box transcription factor 1 2 2
MIRT102299 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT102621 UBN2 ubinuclein 2 2 8
MIRT103780 PURB purine rich element binding protein B 2 2
MIRT104168 PHTF2 putative homeodomain transcription factor 2 2 6
MIRT107279 FAM73B mitoguardin 2 2 2
MIRT107945 TMEM2 transmembrane protein 2 2 2
MIRT108265 HABP4 hyaluronan binding protein 4 2 2
MIRT124812 BICD2 BICD cargo adaptor 2 2 2
MIRT138707 MPP5 membrane palmitoylated protein 5 2 2
MIRT139880 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT144312 NFAT5 nuclear factor of activated T-cells 5 2 8
MIRT145605 LASP1 LIM and SH3 protein 1 2 2
MIRT153350 MAVS mitochondrial antiviral signaling protein 2 4
MIRT153986 PRNP prion protein 2 2
MIRT159129 NRBP1 nuclear receptor binding protein 1 2 2
MIRT164533 MSMO1 methylsterol monooxygenase 1 2 2
MIRT165912 CREBRF CREB3 regulatory factor 2 2
MIRT170858 TAX1BP1 Tax1 binding protein 1 2 4
MIRT172157 FZD6 frizzled class receptor 6 2 8
MIRT173701 PRPF4 pre-mRNA processing factor 4 2 2
MIRT175003 ZBTB5 zinc finger and BTB domain containing 5 2 4
MIRT175400 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178069 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT178675 FAM102B family with sequence similarity 102 member B 2 2
MIRT180847 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 4
MIRT194911 RBBP6 RB binding protein 6, ubiquitin ligase 2 8
MIRT195755 ATMIN ATM interactor 2 6
MIRT196623 TAOK1 TAO kinase 1 2 6
MIRT205286 STK11IP serine/threonine kinase 11 interacting protein 2 2
MIRT206051 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT206198 RAB10 RAB10, member RAS oncogene family 2 4
MIRT208980 SKIL SKI like proto-oncogene 2 10
MIRT223637 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 4
MIRT224757 DPYSL2 dihydropyrimidinase like 2 2 2
MIRT227995 NFIB nuclear factor I B 2 4
MIRT230973 PRRG4 proline rich and Gla domain 4 2 2
MIRT238183 ANKRD33B ankyrin repeat domain 33B 2 10
MIRT242425 HAS3 hyaluronan synthase 3 2 2
MIRT242666 SALL3 spalt like transcription factor 3 2 4
MIRT242765 FNBP1L formin binding protein 1 like 2 6
MIRT243095 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT243437 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT243964 MAP1B microtubule associated protein 1B 2 2
MIRT244776 RABGAP1 RAB GTPase activating protein 1 2 2
MIRT246630 TMEM109 transmembrane protein 109 2 2
MIRT246968 TSKU tsukushi, small leucine rich proteoglycan 2 2
MIRT266055 FJX1 four jointed box 1 2 4
MIRT266858 SLC25A44 solute carrier family 25 member 44 2 2
MIRT283184 C16ORF52 chromosome 16 open reading frame 52 2 2
MIRT286955 SOCS7 suppressor of cytokine signaling 7 2 2
MIRT293651 PVR poliovirus receptor 2 4
MIRT295178 ZNF317 zinc finger protein 317 2 4
MIRT302453 CLIP4 CAP-Gly domain containing linker protein family member 4 2 2
MIRT303499 NAGK N-acetylglucosamine kinase 2 6
MIRT368755 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT383207 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT383610 POU2F1 POU class 2 homeobox 1 2 2
MIRT396102 CASP2 caspase 2 2 2
MIRT441419 FAM9C family with sequence similarity 9 member C 2 2
MIRT446818 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT448307 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT461781 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT462816 NTN1 netrin 1 2 2
MIRT463613 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT464560 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT464842 RPS27A ribosomal protein S27a 2 12
MIRT465225 TRIP10 thyroid hormone receptor interactor 10 2 2
MIRT466446 TFAM transcription factor A, mitochondrial 2 8
MIRT466836 STX6 syntaxin 6 2 6
MIRT467185 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468179 SGMS1 sphingomyelin synthase 1 2 2
MIRT469850 PXK PX domain containing serine/threonine kinase like 2 8
MIRT471612 PAQR5 progestin and adipoQ receptor family member 5 2 19
MIRT472008 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT472159 NIN ninein 2 4
MIRT472336 NETO2 neuropilin and tolloid like 2 2 4
MIRT473162 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT473623 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT473682 MAPKBP1 mitogen-activated protein kinase binding protein 1 2 2
MIRT473805 MAP3K2 mitogen-activated protein kinase kinase kinase 2 2 2
MIRT474416 KLHL28 kelch like family member 28 2 8
MIRT474736 KIF13A kinesin family member 13A 2 6
MIRT474966 KCTD10 potassium channel tetramerization domain containing 10 2 4
MIRT475464 HSPA8 heat shock protein family A (Hsp70) member 8 2 6
MIRT476120 GPR157 G protein-coupled receptor 157 2 2
MIRT476203 GNS glucosamine (N-acetyl)-6-sulfatase 2 6
MIRT477180 F3 coagulation factor III, tissue factor 2 8
MIRT478103 DLG5 discs large MAGUK scaffold protein 5 2 6
MIRT478713 CSNK1A1 casein kinase 1 alpha 1 2 6
MIRT479055 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 8
MIRT480008 CAPRIN2 caprin family member 2 2 4
MIRT480519 C11orf30 EMSY, BRCA2 interacting transcriptional repressor 2 10
MIRT480822 BLCAP bladder cancer associated protein 2 10
MIRT480944 BBX BBX, HMG-box containing 2 8
MIRT481336 ATL3 atlastin GTPase 3 2 2
MIRT481598 ARHGAP1 Rho GTPase activating protein 1 2 6
MIRT481877 ANKRD50 ankyrin repeat domain 50 2 2
MIRT482471 ADAR adenosine deaminase, RNA specific 2 4
MIRT484875 ZNF652 zinc finger protein 652 2 2
MIRT485090 SLC30A1 solute carrier family 30 member 1 2 4
MIRT485579 FOXQ1 forkhead box Q1 2 2
MIRT485618 FBXL5 F-box and leucine rich repeat protein 5 2 10
MIRT486751 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT489599 ZDHHC20 zinc finger DHHC-type containing 20 2 10
MIRT489889 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT491654 PDRG1 p53 and DNA damage regulated 1 2 10
MIRT492038 TSG101 tumor susceptibility 101 2 4
MIRT492361 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT492776 PDGFB platelet derived growth factor subunit B 2 2
MIRT493336 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT493611 HMGB3 high mobility group box 3 2 6
MIRT497468 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT498059 SNX5 sorting nexin 5 2 6
MIRT499901 KIAA1191 KIAA1191 2 4
MIRT500489 ZBTB4 zinc finger and BTB domain containing 4 2 6
MIRT500685 TRIM37 tripartite motif containing 37 2 2
MIRT500760 TMEM127 transmembrane protein 127 2 6
MIRT501456 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 8
MIRT501559 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT501983 MAPK1 mitogen-activated protein kinase 1 2 10
MIRT502000 MAP7 microtubule associated protein 7 2 8
MIRT502049 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 6
MIRT502423 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT503044 CAMSAP2 calmodulin regulated spectrin associated protein family member 2 2 2
MIRT503821 TMEM242 transmembrane protein 242 2 4
MIRT504290 PARP1 poly(ADP-ribose) polymerase 1 2 6
MIRT504560 ZNF417 zinc finger protein 417 2 6
MIRT505054 ZNF202 zinc finger protein 202 2 6
MIRT505486 SRSF2 serine and arginine rich splicing factor 2 2 4
MIRT505836 POLR1B RNA polymerase I subunit B 2 4
MIRT506372 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT506451 NACC2 NACC family member 2 2 4
MIRT506673 LZIC leucine zipper and CTNNBIP1 domain containing 2 4
MIRT506834 KIF23 kinesin family member 23 2 4
MIRT506880 KIAA0101 PCNA clamp associated factor 2 6
MIRT507359 FAM129A family with sequence similarity 129 member A 2 6
MIRT507957 BNIP2 BCL2 interacting protein 2 2 6
MIRT509433 MCM7 minichromosome maintenance complex component 7 2 6
MIRT510872 RAN RAN, member RAS oncogene family 2 8
MIRT511078 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511254 KLHL36 kelch like family member 36 2 6
MIRT513699 RBM20 RNA binding motif protein 20 2 4
MIRT513742 PKNOX1 PBX/knotted 1 homeobox 1 2 2
MIRT513981 CEP97 centrosomal protein 97 2 2
MIRT514092 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT515928 MFAP2 microfibril associated protein 2 2 4
MIRT519574 ZNFX1 zinc finger NFX1-type containing 1 2 4
MIRT521297 RRAGD Ras related GTP binding D 2 4
MIRT521348 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT521693 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 8
MIRT521778 PPIG peptidylprolyl isomerase G 2 8
MIRT522191 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT524696 BTG3 BTG anti-proliferation factor 3 2 8
MIRT525663 NHSL2 NHS like 2 2 2
MIRT527252 TMEM196 transmembrane protein 196 2 2
MIRT527466 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT529535 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT530146 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 2 2
MIRT530851 RAG1 recombination activating 1 2 4
MIRT531109 PEX13 peroxisomal biogenesis factor 13 2 2
MIRT534263 SLC12A7 solute carrier family 12 member 7 2 2
MIRT534756 RASGEF1A RasGEF domain family member 1A 2 2
MIRT535175 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT535246 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 4
MIRT535401 PER1 period circadian clock 1 2 2
MIRT536036 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT536347 LEFTY1 left-right determination factor 1 2 2
MIRT536413 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT536437 KMT2B lysine methyltransferase 2B 2 6
MIRT536604 IRF2 interferon regulatory factor 2 2 2
MIRT536642 INO80D INO80 complex subunit D 2 2
MIRT536860 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 2 2
MIRT537241 GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 2 2
MIRT537728 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537988 DPP8 dipeptidyl peptidase 8 2 2
MIRT538037 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 2 2
MIRT538255 CUL3 cullin 3 2 4
MIRT538525 CLCN3 chloride voltage-gated channel 3 2 2
MIRT538659 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT538779 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 4
MIRT538849 BTG1 BTG anti-proliferation factor 1 2 2
MIRT538923 BRI3BP BRI3 binding protein 2 6
MIRT539114 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT539454 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT541085 RLIM ring finger protein, LIM domain interacting 2 2
MIRT543117 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT543181 FICD FIC domain containing 2 2
MIRT543575 RPF2 ribosome production factor 2 homolog 2 4
MIRT544113 IPMK inositol polyphosphate multikinase 2 2
MIRT544625 CSDE1 cold shock domain containing E1 2 2
MIRT544699 ZNF224 zinc finger protein 224 2 4
MIRT544992 MFF mitochondrial fission factor 2 4
MIRT546248 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT546282 TMEM30A transmembrane protein 30A 2 4
MIRT546290 TMEM200C transmembrane protein 200C 2 4
MIRT546558 SATB2 SATB homeobox 2 2 2
MIRT546815 RAP2C RAP2C, member of RAS oncogene family 2 2
MIRT547046 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT547474 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547761 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT547892 HSPA13 heat shock protein family A (Hsp70) member 13 2 2
MIRT548315 EPHA4 EPH receptor A4 2 2
MIRT548383 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 4
MIRT548460 EGLN3 egl-9 family hypoxia inducible factor 3 2 2
MIRT548579 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 2 2
MIRT548858 CERCAM cerebral endothelial cell adhesion molecule 2 2
MIRT548896 CHEK2 checkpoint kinase 2 2 4
MIRT549319 ARHGAP12 Rho GTPase activating protein 12 2 4
MIRT550302 ZNF681 zinc finger protein 681 2 2
MIRT551120 ZNF107 zinc finger protein 107 2 2
MIRT551406 DCTPP1 dCTP pyrophosphatase 1 2 2
MIRT552173 DAD1 defender against cell death 1 2 2
MIRT552856 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT552892 WASL Wiskott-Aldrich syndrome like 2 4
MIRT553075 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT553668 TFAP4 transcription factor AP-4 2 4
MIRT553700 TCF7L2 transcription factor 7 like 2 2 2
MIRT554608 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT554860 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT556157 MECP2 methyl-CpG binding protein 2 2 2
MIRT556179 MCC mutated in colorectal cancers 2 2
MIRT556529 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT556723 KLHL21 kelch like family member 21 2 4
MIRT557054 HOXB3 homeobox B3 2 2
MIRT557587 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT557661 GATA6 GATA binding protein 6 2 2
MIRT557753 FRS2 fibroblast growth factor receptor substrate 2 2 2
MIRT557881 FEM1B fem-1 homolog B 2 4
MIRT558215 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558264 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 2 2
MIRT558327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558766 CFL2 cofilin 2 2 2
MIRT561037 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT561324 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT561641 RUNX3 runt related transcription factor 3 2 2
MIRT562555 CCDC71L coiled-coil domain containing 71 like 2 4
MIRT562961 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT564680 ZNF35 zinc finger protein 35 2 2
MIRT565694 SESN3 sestrin 3 2 2
MIRT565910 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566141 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT567047 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT567076 KBTBD2 kelch repeat and BTB domain containing 2 2 2
MIRT567539 FGFR1OP FGFR1 oncogene partner 2 2
MIRT567624 FAM210A family with sequence similarity 210 member A 2 2
MIRT570321 ZNF70 zinc finger protein 70 2 2
MIRT571759 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT571857 NKIRAS1 NFKB inhibitor interacting Ras like 1 2 2
MIRT573372 LIMA1 LIM domain and actin binding 1 2 2
MIRT574561 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT614729 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT617877 ESR1 estrogen receptor 1 2 2
MIRT624421 CBX8 chromobox 8 2 2
MIRT625865 SLC35C2 solute carrier family 35 member C2 2 2
MIRT630703 DICER1 dicer 1, ribonuclease III 2 4
MIRT632514 PTPN9 protein tyrosine phosphatase, non-receptor type 9 2 2
MIRT641797 USP32 ubiquitin specific peptidase 32 2 2
MIRT663625 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT680135 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT702388 KLF10 Kruppel like factor 10 2 2
MIRT707830 TMEM133 transmembrane protein 133 2 2
MIRT708885 MOCS2 molybdenum cofactor synthesis 2 2 2
MIRT709122 C3orf18 chromosome 3 open reading frame 18 2 2
MIRT709635 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT710596 CDCA4 cell division cycle associated 4 2 2
MIRT710802 IFNLR1 interferon lambda receptor 1 2 2
MIRT711782 RFXAP regulatory factor X associated protein 2 2
MIRT713344 KLRD1 killer cell lectin like receptor D1 2 2
MIRT713640 MED8 mediator complex subunit 8 2 2
MIRT713916 IGF2R insulin like growth factor 2 receptor 2 2
MIRT715068 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715206 FKTN fukutin 2 2
MIRT717819 FAM114A1 family with sequence similarity 114 member A1 2 2
MIRT720543 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT720636 ELF5 E74 like ETS transcription factor 5 2 2
MIRT721703 ISY1 ISY1 splicing factor homolog 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-519c Bilobalide NULL 73581 Quantitative real-time PCR Human breast cancer MCF-7 cells 21796641 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-519c Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)
hsa-miR-519c-3p Mitoxantrone 4212 NSC279836 approved sensitive Low Breast Cancer cell line (MCF-7)
hsa-miR-519c-3p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-519c-3p Vinorelbine 44424639 approved resistant High Non-Small Cell Lung Cancer cell line (H358, H1993)
hsa-miR-519c-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-519c-3p Gemcitabine 60750 NSC613327 approved sensitive Low Pancreatic Cancer cell line (MIA-PaCa-2)
hsa-miR-519c-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-519c-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-519c-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-519c-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-519c-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-519c-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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