miRTarBase - #MIRT065096


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pre-miRNA Information
pre-miRNA hsa-mir-570   
Genomic Coordinates chr3: 195699401 - 195699497
Synonyms MIRN570, hsa-mir-570, MIR570
Description Homo sapiens miR-570 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies . The 5' end of the miRNA may be offset with respect to previous annotations.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-570-3p
Sequence 60| CGAAAACAGCAAUUACCUUUGC |81
Evidence Experimental
Experiments SAGE
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 3 + 195699464 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs562192952 1 dbSNP
rs772001684 2 dbSNP
rs1429248332 7 dbSNP
rs372336246 8 dbSNP
rs1435829348 10 dbSNP
rs1372443221 12 dbSNP
rs1484195269 17 dbSNP
rs1446121044 19 dbSNP
rs761215764 20 dbSNP
rs764570717 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B92RKB miR-570 Predictive Biomarker (PRD) Transcriptomic Data . . . .
Gene Information
Gene Symbol SLC38A1   
Synonyms ATA1, NAT2, SAT1, SNAT1
Description solute carrier family 38 member 1
Transcript NM_001077484   
Other Transcripts NM_030674   
Expression
Putative miRNA Targets on SLC38A1
3'UTR of SLC38A1
(miRNA target sites are highlighted)		 
>SLC38A1|NM_001077484|3'UTR
   1 AACCCGCCGAGAAAAAGAAACATCCCTGTTGTCTGCTCAGTCAAGTCCCCACACATCAGCAATCTCTCACCACTTCTTTT
  81 GCAAGTTTACAGAAGCAAACAGAAATGTACAGGATACTTAAAATGGAATAACTTTTTGGTTGCAAAACAGAGACATGGTT
 161 CTATAATGCTTCATGTCCCTCCAAGATTTGAGATCAATTTAGGGATTGTGAAATTTTTTTTTCAAATTTCATACAATCAT
 241 ATTTCCCAGTACTTTTCACAATCATTTTTTACCCATCTAACTCTATGTTTTGTGGCTTCCCGGTCTCTTAGAACTTTGAA
 321 AACATGATATACAATAATGTTTATTTATTATACATCCAGATTCTGAAATAATTTTCCTACTGATGTTCAGCTCACACTAT
 401 CTGTACCTTTTTAGAAGAGAAAAGAATCTTGAATTGTATATATTTATTTTGCTTTACAGAAAAAAATGGTTTCGTAAATA
 481 ATTTGCCTATTTTGGTTAACATAGCACATGGAGATAATCATCTGAAAGTTATAGGGCACTGCCACTGCTGAATCAGAGCA
 561 TGCCCAATATTTGAGGTGGCTCTGATTTCCTGGCAGCTGAACTCGGGTAGTCCAGTGGCCTAGCTGGTACCACATCTATT
 641 CCCATCCAGAGACATTCTCTGGCAAGTGTTCTCAGCTGAAAAGTGGTTGGGGATGATTCTTACCTTGGTAATTAAATGAA
 721 GCTACACATTTGGGTAATCTAGCAAATGAAGTATTTTTTCCCTCTTGGCAACTTGTGTCAGAGTTACTCTGGTCTGAGTC
 801 AACTTTCGCTGGGGAAAACCTATGGAACCTACTGCAAAAAGATTGTCCAAAATGCCTAAGAAAATACTCCTCTGATGCAT
 881 TTAGCCTTCAACCCTACCTGTCTTGCTGAAGGGAGAAAAATGTTTTAGTACATTATAGGCCCAGCAGCTTTTATTCATGT
 961 CCACCAGCTAGTTGCACAGAGAATCATGTGTACCTAACTAAGGATGATCTAGGATAAGTAACTCCTGTTTTATATTGAGT
1041 ATTTTAGGGAAGTCTTTAAAAGACTTGTTTTATATCTATAAATCTAGGTTATTACAAATACAAGAATTTTGTACCTTAAA
1121 TAAGCCTCATTTCTATTTCTTCTTCATTAATTCTCCATCTAGTCTTGTGAAAAAAAAAAAAAAAAAACCCTCAGAGATAG
1201 TCTTTGTGAAGAGCTTCTGACAGAATCACTGAGTACCTTCCTTCCCCCAGATGAGGAAGACAAGGGGGTCTCAGTGTCTG
1281 TGCTGTCTCCTCTTCTCTTCCCCAACCAAGGACTGTGCCATTACTGCCCGTCTCAACTGTCCATGCAGGAGGACAGAGTT
1361 GCCTGGTACTCTTACCCTTGTCCCTCTCCTAAAGGGAGCACAAGGAAACTGAAGAGACTGAAAAAGAAGAGAGTTTGTAG
1441 CTGAAAAAGAATAGGGATAGCAAGGAAACCCAGAACTGCATTCCCCTAAGTGGGGCCATCCCATGTGATTGAATTGTCCA
1521 TAGCTTGCCTATGGTGAGAAATGTGCATGCTCCGTGAGCTGGTCTCTTGAAACAGGACTTATGCTTCCTCTATATTCTGG
1601 TTAAATTTTCCAAACACATAAGTTCACTGAGCACAGATTTCTTATCCAGAGACAAGTAGAATCTAACCGCAGACTGTTGG
1681 CAGAGTTTCCAGGCACTTAGCCATGTTCCCTTCCTGACTCAAATCCCCAAAGGCCTTCACTCTCACTGAGAATCACACTA
1761 CTGTCCCATAGATAAGGCAGGCATTGAAGCACCTGTCGTGATCCTCTAGGGGGGAGAATGAAAGGTTATTTCCTGCATTG
1841 CATCATCATAGCTTTTAATATAATGCTACAGAATCATATCCACATTAGGTTAGAGTTCAGATATTTGGATATGAATACCT
1921 AACCTAGCCATATCCATGGCCATCTCTGTTCTTTTCAGCAATGTTTTCCATATTATATTAGCAATGACAGAAACAGAACA
2001 AGCCAAGATCCAGTCAGTTCTTGGGAGCTTGTCTAGAGCACCAAGTAATGAAATAGCCAGGTAGTGGGATGACTGTACCT
2081 TTAAAAATACATAATTTAGTTTGCAAGCTATATTATGCTACTTTCTATTTTCCTTGTTACTTTATAGCAATTCATTTTAC
2161 CCTCACAAAGTCAATTTAGAACCTTATCATTAACTGGGATGTGTAGTGATATTTTTGGGCCTCTGGGTTTCATGTGTCAA
2241 TACAAGGAATATTTATTTAAAATAGATTTATTTAGAGGAGGCACAGTGTTGTTGATCTGTGTGACACCACCCATATTTTT
2321 AAAAACCTTTGTATGTTTCTCTAAATTTGTTGTTGACTGAATATAATAGACCCTACCATAATTCGTCAAATATCACTGAT
2401 TAGTTACATCCTTTGTGTGAGATTAGCTGTAAAGTATACTGCTCTTATTCTTATTCAGAATAGTTAATTGGTAGCCAAAA
2481 ATACATGTATCACAGATGTTAGGTCGAATTTAAACAGCACAGTCAAGTGCTATGGAAGTTTTTCTGCTAAATTAGTAGAT
2561 TAAAGAATACTATACCCTAGGCATGGGGAGCAGCACGTTTTCCTTTGGTAGGTAGGATCTCTATACTAGTGAACAGTGCC
2641 AGTTCCACACTTTGGACTTAGAACTGTTCTCTAGTTATTGTAACACAGAATACTGTCAATCCCTAATTTACTTAATGTTA
2721 CTTATTGGAAGTGGGGCTGATGAAATACGCACAGGAGGGAAATCTACTGTGTTTAGGCACAGGCAGCCCCAGTGTATAAG
2801 GAGATCATATTCCAAAAGGTTGTCAGTTGGTTGTTTGCAACCTGGAATGTATTTTCCTTTAGAGACCAGGTTATCCATGG
2881 TGGTTAGGCCCCTAGAGCAGCTGGAAAAGATGATCAAACCAATAGGTTAGCTGACATCGAATAATGTAATAGGTTTGCTA
2961 AAGAATCTAACCATCAAATATAATATTGTTTCCAGGGAGGGTGTTTGTTCAGAGTTGCCTGTTAGTAGAATCTGGACTGT
3041 CCATCCCAGCCACATCCCACCTACTGGACAGTAGGGGTAGAGATGCCACCAGACTACAGGTGACCAGATTGGCCTGAAAC
3121 ATGGTGTCCAGTAAAAACGGGGAGGAATAAGTCCATGACTGCTGGAGAGCTTGGTGGTAGGAGGAGGGTGAAGGAGGGTG
3201 AGGGGGCCTCTCATGGGTCAGAAACCTCCAGGGACATCCCTCAGCTGGTAACTCTGCTGTTGTCCGGAGGGTTCAGGCTT
3281 GGTGTGCCTTCTTCTGTTTGTCTGACTTTTGGCTCCTATGGTTCATCTCCTGCCCTGCCCACCACAGAAAAGGATGCTGC
3361 TGCATAGCTTCTCCAATGTACCAGTCATTGAGGCCAGCGCGCAGCACTTTTAATGTTTTTAGTGCTAGTAACTGTGTTTT
3441 AACTCTCCAGGAATAAGCTGGGAGGTTAGAAAACAAGAAAAAAGGGGGAAAAAAAAACCTCTCCACCCACTTTCCTTTTT
3521 TACAGTTACAGACCCTGTTGAGAAAAAGAAGCACCCAGATGGGTGATGGTGATAGGGCTTGTGGTGGACACAGGGTTGTG
3601 GTAAGATTCCTCAGTGCTTCGGCGAGCACCTAAGACTATTACCCTGGAACTGACTGCTTTCTAGAGCTTGATTCATGCCT
3681 CTAAGCCAGTGGTTCTCAAAGTGTGGCCCCTAGACCAGTAGCATCAGCATCATCGGGGACCTCATTAGAATGCAGATTCT
3761 CAGCCCCCTCCCAGACATGGTGAAGTCAGAAGCTCTCAGGGAGGGACTCAGCAAATGATTCTAAAGCGCATCAAGTTTGA
3841 GAACCACCCTAAGCCAATGAGTCTCCCTTTTACTTCCCATTAGTCCTCCCTCACCAGATGATTCCTAGGACTCATGGTGC
3921 AACATACAGGAGCCAGGCTTTAGGGAGGGGAGGAAAGGAGCCTGGCGGCAGGGGTCTCTGCAATGGCAAGAAAGTGAGTG
4001 AATCCAGCGCTGCCACCTGGTTATCCCCTTCTCGTTGAAAATAGCAGCGCAGGTGCAAATTCCTAAACACAGGCTGCCTG
4081 CACTCGGTGTTACCTCGGGCTGAGGCATGATAATATTTTATTTTTTAAAGCTGTGAGGAAATGAAAGTGAGGCTTTGGTT
4161 GGGGCGAGGCAGTTGTGAAAGAAATTAAAATAAAAGACCCTTTGTAAATGCAGACTTAGAAGAAATACTGAATTTGTGTC
4241 AGAAGTTCTCCAGTGTTTGTGTTAATCGTGTGGTGATAATCCTGTCCTCCTTTTAAAGCGAATTCTCTACTGAAAGGTCT
4321 GCTCTGCTTAAGGAGCTACAAACTGCTCTCAAAAGAATGAAATACTGAGTTCCAATTCAGTGAGGCACAGTGTTGGACTA
4401 TGGCACATTTAGTTGGAGTCGGGGGGAGGTCAGGAATATGATCAGATAATGGATTTTATACCTTAGAGCAAAATCTATTA
4481 GTCTCTCTCAGTTTATCAATTTAAATGGCTTTAGGCTTATAGGGGGTGTAAACTTTAAGAATATAATTCTCCCATTCAAG
4561 TTTACAGCAAACATCTAGCCACCTTCAAAACAAAGAATATACAGACCATCATTTAGCAATACTAATACATGATTTTCCTT
4641 GGGGATGGCAGGTTTGAGAATCCTTTAGCAACAGGACATACTTCCCCTAAATTACAGTGAATTATTTATAACGAGATAAA
4721 GCTTTCAGGTACAAGCTGAAGGTGGGGTGTCTAACAACTAAAAACTATCACTAAATCTCAAAGAGAAAGTTCTTGCAAAA
4801 TATGTAAAGTTCACAAGGTGCAGACATTTTCCTTCTTTAGGCTTTTATCTAAGGAAGGGCTATGAAACTGGGCCCATCTG
4881 TATACAGGCTCAAATTTACGTTTTTAAAGGAAGAATCTATGCAGCTGAGGCTTATTGCAGGAAATACTTCATTTGTATGT
4961 AAATATTATTGTAAATAAATAGGAGGCTGTATATTTTTGAAGTTGTTGATCTGCACTGAAATAGAAGTCTCTAGGATCTG
5041 CATATAAACAATAAATGTTTCCTAGAAATTAGTGGTTTTGTTTGGGAATTAGAAAAATTTACATTCTCTCCCAGGTAACA
5121 TAGTTCTCTCAATGTAAACTTGGAACCTGAAACCCTACTTAATTTAGAGAAAGAAATGTCTGAGAAATAGTTCCCTTGAT
5201 TTCTTATGCTGGCATTAAGATCAATTATTTAACAGATAGTCCTCTGAGATACAAGTAAGGAATATTTAGACACAAATCCT
5281 TGTCCTATAGAAACAGATATACCCAAATGACAAATTGTTTCTTCATAATGATCTTCCATTTTTAACACTGATACCACTAC
5361 ACAGTACATATGAAAACAGAAGCTGGGGAGAAGAATGTTTTTTTCACAATTGAATTGCTGCATTTCTCAAACTTTGGGAT
5441 CTATGAAAGCGGGGAGAGGGAACCTGAATATTAATTATGAGCACAAATTTGAAGGAAAGAAAACAAAGAACCATTATCTA
5521 ATCAAGCTTTGAAAGTCCTGCATGTTTGCCTTTTATTTTAGTGTTGACGCCAACATAGACTGTCTAAGGTATTTTTTTCC
5601 CCAAACACTTGAATCTTGGTCGTTGGTATGTAATCCACTCTCTAGAGTCCAGTGTACTTTAGACTTCATCTGAGTCCAAT
5681 ACATGTACCACACTACTGTTTTATTAATGTAAAAACCTTGTAAATGAATTTCAGATGGGTGATTTAAGTGAGTCACAAGT
5761 CACAAAACTTTGCTATTCATAGTTAATCAAATAGAACTGGGTTTTTTTTTTCAGAGTGTGGTGTAAATAAAGAAATATAA
5841 GAAGTTCTGTTCTATAACTGCTCTGTTAACATAGTTTTTAAACATTAAAAAATGTGAACTAAAAGTATTTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUUUCCAUUAACGACAAAAgc 5'
            | | |||| | |||||||  
Target 5' ggATAAGTAACTCCTGTTTTat 3'
 1012 - 1033 148.00 -6.70
2 
miRNA  3' cguuucCAUUAACGACAAAAgc 5'
                |||| || ||||||  
Target 5' gtgctaGTAACTG-TGTTTTaa 3'
 3422 - 3442 139.00 -5.80
3 
miRNA  3' cgUUUCCA----UUAA-CGACAAAAGc 5'
            ||||||    |:|| |:||||| | 
Target 5' caAAAGGTTGTCAGTTGGTTGTTTGCa 3'
 2813 - 2839 138.00 -10.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31495763 5 COSMIC
COSN30677789 12 COSMIC
COSN30481616 15 COSMIC
COSN30482999 24 COSMIC
COSN30528332 39 COSMIC
COSN20077678 49 COSMIC
COSN30460147 49 COSMIC
COSN31488101 57 COSMIC
COSN30144936 77 COSMIC
COSN31526562 94 COSMIC
COSN27854666 113 COSMIC
COSN31548863 122 COSMIC
COSN31586476 123 COSMIC
COSN30179835 126 COSMIC
COSN30607532 184 COSMIC
COSN31583054 185 COSMIC
COSN8863948 213 COSMIC
COSN28850421 214 COSMIC
COSN30159166 331 COSMIC
COSN15668302 376 COSMIC
COSN15668303 377 COSMIC
COSN31485827 433 COSMIC
COSN31532315 474 COSMIC
COSN20638100 524 COSMIC
COSN1574727 579 COSMIC
COSN21157060 585 COSMIC
COSN7372069 771 COSMIC
COSN19337529 1170 COSMIC
COSN20109498 1170 COSMIC
COSN21005169 1179 COSMIC
COSN29648657 1180 COSMIC
COSN5944797 1202 COSMIC
COSN19345483 1368 COSMIC
COSN5944796 1464 COSMIC
COSN22267586 1816 COSMIC
COSN6408891 1924 COSMIC
COSN505905 2140 COSMIC
COSN15704288 2147 COSMIC
COSN505904 2211 COSMIC
COSN25309726 2384 COSMIC
COSN17701745 3489 COSMIC
COSN29602652 3489 COSMIC
COSN1148453 3727 COSMIC
COSN20856693 4041 COSMIC
COSN23454193 4483 COSMIC
COSN22384518 4549 COSMIC
COSN24555244 4708 COSMIC
COSN19663688 4832 COSMIC
COSN31520554 4841 COSMIC
COSN31568575 4979 COSMIC
COSN30174616 5018 COSMIC
COSN32058675 5178 COSMIC
COSN23862349 5290 COSMIC
COSN27569811 5405 COSMIC
COSN24553865 5703 COSMIC
COSN30174472 5726 COSMIC
COSN29345524 5816 COSMIC
COSN19516105 5821 COSMIC
COSN31582435 5890 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs751589330 2 dbSNP
rs764277138 4 dbSNP
rs758530067 5 dbSNP
rs752919199 6 dbSNP
rs765479479 8 dbSNP
rs759825908 9 dbSNP
rs1237723434 12 dbSNP
rs1199519631 16 dbSNP
rs754212368 21 dbSNP
rs1274892685 24 dbSNP
rs1299182999 25 dbSNP
rs766854849 26 dbSNP
rs1355522892 27 dbSNP
rs761308500 31 dbSNP
rs1247522464 37 dbSNP
rs772564451 47 dbSNP
rs1308019814 49 dbSNP
rs376478003 50 dbSNP
rs1266872885 55 dbSNP
rs1463284915 56 dbSNP
rs1180382278 59 dbSNP
rs1242306127 61 dbSNP
rs987891134 76 dbSNP
rs1421021512 81 dbSNP
rs1024084223 85 dbSNP
rs548876836 89 dbSNP
rs990889437 110 dbSNP
rs531975137 126 dbSNP
rs1482952984 130 dbSNP
rs1158552432 137 dbSNP
rs1386494337 154 dbSNP
rs185275211 155 dbSNP
rs966301365 162 dbSNP
rs534239493 166 dbSNP
rs1310708192 167 dbSNP
rs911722020 173 dbSNP
rs1435584981 177 dbSNP
rs768335240 183 dbSNP
rs1277997375 197 dbSNP
rs1223986916 204 dbSNP
rs1287191431 206 dbSNP
rs1326507106 210 dbSNP
rs61923107 211 dbSNP
rs953282763 212 dbSNP
rs1045278 213 dbSNP
rs532451297 214 dbSNP
rs886308686 214 dbSNP
rs1219843335 219 dbSNP
rs1248770650 223 dbSNP
rs962723617 227 dbSNP
rs1346008992 235 dbSNP
rs1410374963 239 dbSNP
rs181387263 241 dbSNP
rs900154580 242 dbSNP
rs1413348978 247 dbSNP
rs377474900 260 dbSNP
rs944450545 264 dbSNP
rs1367160010 271 dbSNP
rs1004290235 274 dbSNP
rs1298574951 285 dbSNP
rs896684318 286 dbSNP
rs754713817 287 dbSNP
rs1052832586 292 dbSNP
rs1443825675 293 dbSNP
rs1453092333 299 dbSNP
rs1443913736 301 dbSNP
rs935497303 302 dbSNP
rs1291541026 303 dbSNP
rs1357122154 306 dbSNP
rs1204875146 313 dbSNP
rs1174673432 324 dbSNP
rs1250337790 327 dbSNP
rs1484286111 329 dbSNP
rs1056636157 330 dbSNP
rs924133524 334 dbSNP
rs1471949991 339 dbSNP
rs189787665 340 dbSNP
rs530016469 343 dbSNP
rs778985386 344 dbSNP
rs979639809 348 dbSNP
rs905467927 351 dbSNP
rs1043935032 352 dbSNP
rs946411339 353 dbSNP
rs560884500 355 dbSNP
rs544092043 360 dbSNP
rs184616191 368 dbSNP
rs1157620911 372 dbSNP
rs916562001 377 dbSNP
rs1393016834 381 dbSNP
rs191374883 386 dbSNP
rs944470208 391 dbSNP
rs1179390042 395 dbSNP
rs1482391940 396 dbSNP
rs960788985 397 dbSNP
rs1035095322 402 dbSNP
rs911593798 407 dbSNP
rs1383069905 412 dbSNP
rs545098801 424 dbSNP
rs1204312281 426 dbSNP
rs950513915 427 dbSNP
rs1325781639 431 dbSNP
rs1027519460 436 dbSNP
rs931779561 451 dbSNP
rs186477163 462 dbSNP
rs755584593 465 dbSNP
rs1316335014 467 dbSNP
rs1449018592 468 dbSNP
rs1187723904 469 dbSNP
rs1307420531 472 dbSNP
rs1017234049 473 dbSNP
rs552955056 474 dbSNP
rs890156748 482 dbSNP
rs1412329043 493 dbSNP
rs1338053525 494 dbSNP
rs1406381965 505 dbSNP
rs1301925763 513 dbSNP
rs867698595 519 dbSNP
rs1295898634 520 dbSNP
rs1015590434 531 dbSNP
rs1052783900 532 dbSNP
rs934438593 536 dbSNP
rs1274834617 541 dbSNP
rs1343486686 545 dbSNP
rs1414949681 546 dbSNP
rs1452671423 576 dbSNP
rs1205650531 580 dbSNP
rs536280502 584 dbSNP
rs983148424 589 dbSNP
rs1464640378 592 dbSNP
rs902659556 602 dbSNP
rs1015008040 604 dbSNP
rs1044301455 605 dbSNP
rs77756454 606 dbSNP
rs780509418 607 dbSNP
rs555340903 616 dbSNP
rs1476970073 626 dbSNP
rs1177990976 630 dbSNP
rs747510006 638 dbSNP
rs1004926297 646 dbSNP
rs1002347739 647 dbSNP
rs184749726 659 dbSNP
rs1022531658 668 dbSNP
rs1383192258 679 dbSNP
rs569434684 681 dbSNP
rs1011106147 687 dbSNP
rs1329869694 689 dbSNP
rs892166392 695 dbSNP
rs112762510 697 dbSNP
rs927974623 700 dbSNP
rs79177868 722 dbSNP
rs1226638139 727 dbSNP
rs890229024 733 dbSNP
rs1050153738 738 dbSNP
rs1205520411 745 dbSNP
rs1266354310 752 dbSNP
rs757147838 753 dbSNP
rs566883063 755 dbSNP
rs2289771 760 dbSNP
rs973649731 760 dbSNP
rs1472010275 762 dbSNP
rs1017933630 763 dbSNP
rs973355675 769 dbSNP
rs940618437 782 dbSNP
rs1453944446 799 dbSNP
rs1485467789 805 dbSNP
rs530079021 807 dbSNP
rs560945467 808 dbSNP
rs1350408627 812 dbSNP
rs1408087418 813 dbSNP
rs1309167025 820 dbSNP
rs1317772784 821 dbSNP
rs753155320 822 dbSNP
rs1263868812 829 dbSNP
rs960969938 834 dbSNP
rs145329509 842 dbSNP
rs530676845 844 dbSNP
rs1482648903 847 dbSNP
rs980812585 856 dbSNP
rs1294751392 861 dbSNP
rs1419120312 864 dbSNP
rs969563522 869 dbSNP
rs1386230453 873 dbSNP
rs1011484661 874 dbSNP
rs1022417541 877 dbSNP
rs753300858 878 dbSNP
rs1456882665 880 dbSNP
rs1349629407 890 dbSNP
rs892728267 892 dbSNP
rs2289772 896 dbSNP
rs1031646156 897 dbSNP
rs1395499457 898 dbSNP
rs12414 908 dbSNP
rs1385254826 912 dbSNP
rs927923545 913 dbSNP
rs1047780632 914 dbSNP
rs1388560534 920 dbSNP
rs1187927688 923 dbSNP
rs544847219 953 dbSNP
rs920687517 957 dbSNP
rs779275627 968 dbSNP
rs1262280207 969 dbSNP
rs1180767834 972 dbSNP
rs755306614 974 dbSNP
rs754017286 977 dbSNP
rs1206803858 981 dbSNP
rs577781626 988 dbSNP
rs373612843 998 dbSNP
rs572971899 999 dbSNP
rs1173219156 1002 dbSNP
rs1290758250 1003 dbSNP
rs1223025120 1008 dbSNP
rs1301092777 1013 dbSNP
rs1408590782 1025 dbSNP
rs1453588809 1033 dbSNP
rs1361082167 1036 dbSNP
rs910412875 1039 dbSNP
rs898874189 1041 dbSNP
rs559215905 1042 dbSNP
rs940489666 1044 dbSNP
rs1031257898 1051 dbSNP
rs1260653269 1063 dbSNP
rs907805725 1065 dbSNP
rs568904970 1074 dbSNP
rs1021790459 1075 dbSNP
rs1345502362 1088 dbSNP
rs1188650247 1092 dbSNP
rs939398285 1096 dbSNP
rs1433056687 1100 dbSNP
rs1304067215 1104 dbSNP
rs927960305 1112 dbSNP
rs115859295 1114 dbSNP
rs895292146 1117 dbSNP
rs376668906 1120 dbSNP
rs1320208648 1124 dbSNP
rs1055312240 1125 dbSNP
rs1428388255 1129 dbSNP
rs1290353504 1140 dbSNP
rs915293652 1141 dbSNP
rs1281264593 1142 dbSNP
rs1368902052 1146 dbSNP
rs1223582345 1150 dbSNP
rs1267179262 1158 dbSNP
rs1444857496 1159 dbSNP
rs1168220743 1167 dbSNP
rs1462734419 1168 dbSNP
rs1218402595 1169 dbSNP
rs1003776073 1170 dbSNP
rs1243010401 1170 dbSNP
rs869102437 1170 dbSNP
rs1491149956 1171 dbSNP
rs1480842353 1172 dbSNP
rs1431359780 1174 dbSNP
rs1268113359 1178 dbSNP
rs1199794321 1179 dbSNP
rs11183388 1180 dbSNP
rs1047729849 1181 dbSNP
rs1271980643 1181 dbSNP
rs1404081331 1182 dbSNP
rs1194841959 1184 dbSNP
rs1339737921 1185 dbSNP
rs200236360 1187 dbSNP
rs1278387883 1188 dbSNP
rs1294593071 1188 dbSNP
rs1405038268 1188 dbSNP
rs398019385 1188 dbSNP
rs57661149 1188 dbSNP
rs753621644 1188 dbSNP
rs77481022 1188 dbSNP
rs779847516 1188 dbSNP
rs865842734 1188 dbSNP
rs879184583 1188 dbSNP
rs1490639338 1189 dbSNP
rs1230455176 1190 dbSNP
rs989681828 1196 dbSNP
rs1323363264 1199 dbSNP
rs1181577785 1205 dbSNP
rs1231205959 1206 dbSNP
rs1471180760 1223 dbSNP
rs957073383 1247 dbSNP
rs1413323482 1249 dbSNP
rs1423848425 1253 dbSNP
rs750326159 1259 dbSNP
rs538544925 1270 dbSNP
rs1161369254 1272 dbSNP
rs767402147 1278 dbSNP
rs1284516221 1285 dbSNP
rs929287620 1287 dbSNP
rs575811972 1292 dbSNP
rs1407092703 1294 dbSNP
rs188550620 1295 dbSNP
rs1333522166 1298 dbSNP
rs1443713887 1306 dbSNP
rs1279839761 1311 dbSNP
rs1328654665 1313 dbSNP
rs954398099 1315 dbSNP
rs1038176752 1320 dbSNP
rs1244251166 1325 dbSNP
rs1294337954 1329 dbSNP
rs550712150 1330 dbSNP
rs1271472074 1332 dbSNP
rs995806967 1337 dbSNP
rs1465612374 1339 dbSNP
rs1442949500 1340 dbSNP
rs1181550461 1342 dbSNP
rs1386820967 1343 dbSNP
rs898926545 1344 dbSNP
rs113991506 1346 dbSNP
rs1177097171 1347 dbSNP
rs1167313701 1348 dbSNP
rs1481399564 1353 dbSNP
rs1411160991 1354 dbSNP
rs924523929 1361 dbSNP
rs1404927816 1365 dbSNP
rs1449961020 1368 dbSNP
rs1249342231 1375 dbSNP
rs1316678453 1382 dbSNP
rs1384051423 1386 dbSNP
rs1227133037 1391 dbSNP
rs977349143 1399 dbSNP
rs1342008521 1401 dbSNP
rs1437990117 1402 dbSNP
rs1252229161 1410 dbSNP
rs1198187023 1419 dbSNP
rs149307682 1424 dbSNP
rs1460176889 1429 dbSNP
rs1205858526 1434 dbSNP
rs886260260 1440 dbSNP
rs3742060 1444 dbSNP
rs768455497 1456 dbSNP
rs138579086 1458 dbSNP
rs1192119709 1468 dbSNP
rs1371279529 1469 dbSNP
rs1327784378 1481 dbSNP
rs1168021357 1484 dbSNP
rs1428033968 1485 dbSNP
rs1279325860 1488 dbSNP
rs1467751712 1490 dbSNP
rs958502006 1493 dbSNP
rs567331286 1501 dbSNP
rs796958217 1502 dbSNP
rs948030104 1519 dbSNP
rs906735875 1520 dbSNP
rs1328733715 1526 dbSNP
rs1228747539 1527 dbSNP
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rs1332479240 1546 dbSNP
rs544083389 1550 dbSNP
rs1406895121 1551 dbSNP
rs1338856891 1553 dbSNP
rs993777114 1554 dbSNP
rs567384860 1556 dbSNP
rs868836709 1565 dbSNP
rs989956330 1570 dbSNP
rs1194358551 1574 dbSNP
rs1405718729 1581 dbSNP
rs956925981 1582 dbSNP
rs924098926 1589 dbSNP
rs1479206340 1599 dbSNP
rs762526681 1601 dbSNP
rs775036861 1604 dbSNP
rs943407690 1605 dbSNP
rs987617619 1606 dbSNP
rs1429578261 1610 dbSNP
rs954949476 1618 dbSNP
rs74832851 1626 dbSNP
rs1383108036 1634 dbSNP
rs933152300 1641 dbSNP
rs924471691 1650 dbSNP
rs1184927873 1651 dbSNP
rs1283949913 1663 dbSNP
rs142683434 1668 dbSNP
rs376073820 1669 dbSNP
rs963022303 1670 dbSNP
rs528315496 1671 dbSNP
rs1262688582 1679 dbSNP
rs1352643033 1681 dbSNP
rs745422819 1683 dbSNP
rs778316182 1692 dbSNP
rs1205083331 1703 dbSNP
rs1463892283 1706 dbSNP
rs1290948840 1708 dbSNP
rs1284191774 1709 dbSNP
rs11183387 1712 dbSNP
rs559583040 1726 dbSNP
rs1417972165 1727 dbSNP
rs1353317469 1728 dbSNP
rs1282845400 1742 dbSNP
rs1245510892 1745 dbSNP
rs1454693364 1752 dbSNP
rs1163263429 1757 dbSNP
rs1383874717 1758 dbSNP
rs1016045601 1761 dbSNP
rs981210103 1769 dbSNP
rs772775586 1770 dbSNP
rs183570691 1773 dbSNP
rs1005032448 1777 dbSNP
rs886313376 1781 dbSNP
rs1317580424 1793 dbSNP
rs1026495673 1797 dbSNP
rs573735801 1798 dbSNP
rs1002629299 1807 dbSNP
rs1357237913 1809 dbSNP
rs899415377 1810 dbSNP
rs1480059910 1812 dbSNP
rs905802269 1813 dbSNP
rs1252238031 1815 dbSNP
rs1044271745 1816 dbSNP
rs1183399349 1824 dbSNP
rs1383818818 1833 dbSNP
rs1446797878 1834 dbSNP
rs948083265 1838 dbSNP
rs369501401 1842 dbSNP
rs1053912094 1853 dbSNP
rs1007550341 1861 dbSNP
rs1299900392 1867 dbSNP
rs1397513681 1868 dbSNP
rs889155308 1872 dbSNP
rs1334936564 1874 dbSNP
rs573667570 1879 dbSNP
rs1051778698 1888 dbSNP
rs1247882961 1889 dbSNP
rs997586449 1893 dbSNP
rs935416500 1904 dbSNP
rs924014789 1906 dbSNP
rs902996416 1907 dbSNP
rs1457796976 1915 dbSNP
rs1194493826 1920 dbSNP
rs996364355 1924 dbSNP
rs1240869073 1926 dbSNP
rs1041552701 1936 dbSNP
rs1182735491 1937 dbSNP
rs1449275403 1938 dbSNP
rs1172667244 1940 dbSNP
rs1424478724 1951 dbSNP
rs1469338038 1958 dbSNP
rs1335043233 1962 dbSNP
rs1408569812 1964 dbSNP
rs1288148440 1987 dbSNP
rs1303155039 1994 dbSNP
rs796309759 1997 dbSNP
rs1360350646 2001 dbSNP
rs914504468 2002 dbSNP
rs1297605997 2011 dbSNP
rs1318070081 2029 dbSNP
rs543081921 2031 dbSNP
rs1260868277 2043 dbSNP
rs1226212068 2062 dbSNP
rs1325168526 2064 dbSNP
rs1443481979 2065 dbSNP
rs1361332338 2070 dbSNP
rs767920077 2071 dbSNP
rs937022401 2078 dbSNP
rs1485081107 2079 dbSNP
rs1188855404 2090 dbSNP
rs1264517962 2091 dbSNP
rs1480189627 2092 dbSNP
rs1174282823 2093 dbSNP
rs1431739565 2095 dbSNP
rs922204286 2100 dbSNP
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rs11183386 2103 dbSNP
rs1451340870 2106 dbSNP
rs1300031106 2120 dbSNP
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rs2241960 2135 dbSNP
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rs1280750039 2139 dbSNP
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rs779359508 2172 dbSNP
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rs957467806 2997 dbSNP
rs957706400 2999 dbSNP
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rs976294190 3210 dbSNP
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rs539939513 5038 dbSNP
rs1391493738 5040 dbSNP
rs1332975560 5043 dbSNP
rs183603024 5044 dbSNP
rs1001968668 5057 dbSNP
rs142516219 5060 dbSNP
rs1225630781 5070 dbSNP
rs533654607 5080 dbSNP
rs528734000 5088 dbSNP
rs1200358847 5089 dbSNP
rs1356603263 5092 dbSNP
rs1313825064 5093 dbSNP
rs1486690742 5110 dbSNP
rs1188927113 5113 dbSNP
rs975371982 5115 dbSNP
rs1168010111 5116 dbSNP
rs1427727177 5116 dbSNP
rs1397109430 5131 dbSNP
rs1381986304 5132 dbSNP
rs964037436 5146 dbSNP
rs1430505073 5155 dbSNP
rs1361360383 5157 dbSNP
rs1172923007 5161 dbSNP
rs1019653962 5178 dbSNP
rs1160660898 5181 dbSNP
rs1313129341 5187 dbSNP
rs760231598 5190 dbSNP
rs1423023177 5193 dbSNP
rs1384686041 5199 dbSNP
rs1380921130 5206 dbSNP
rs1008761433 5208 dbSNP
rs1010326614 5213 dbSNP
rs1031253277 5222 dbSNP
rs1424251350 5237 dbSNP
rs564321589 5241 dbSNP
rs891851569 5252 dbSNP
rs1184506696 5255 dbSNP
rs1487825809 5263 dbSNP
rs1000763774 5264 dbSNP
rs1263681654 5278 dbSNP
rs1233239720 5287 dbSNP
rs1041246227 5294 dbSNP
rs1278728524 5295 dbSNP
rs1218336242 5299 dbSNP
rs1489753692 5304 dbSNP
rs1211624983 5330 dbSNP
rs192608319 5347 dbSNP
rs1045030834 5348 dbSNP
rs1244891088 5349 dbSNP
rs911487517 5355 dbSNP
rs1049998193 5356 dbSNP
rs947700514 5362 dbSNP
rs896190868 5364 dbSNP
rs772923144 5367 dbSNP
rs1393134125 5368 dbSNP
rs1436072952 5369 dbSNP
rs1173676553 5370 dbSNP
rs1056194806 5371 dbSNP
rs1290201836 5373 dbSNP
rs1363180616 5376 dbSNP
rs1294093695 5379 dbSNP
rs1218619987 5380 dbSNP
rs1386551337 5380 dbSNP
rs1341491290 5382 dbSNP
rs1300511188 5384 dbSNP
rs1403270196 5393 dbSNP
rs1235614342 5395 dbSNP
rs1365189516 5405 dbSNP
rs1315143972 5406 dbSNP
rs1218216747 5409 dbSNP
rs115964712 5413 dbSNP
rs919601131 5418 dbSNP
rs972333886 5419 dbSNP
rs1459528378 5424 dbSNP
rs961122229 5434 dbSNP
rs764647136 5437 dbSNP
rs769817292 5438 dbSNP
rs917639785 5439 dbSNP
rs113543722 5440 dbSNP
rs991974448 5443 dbSNP
rs959184217 5444 dbSNP
rs1194125356 5450 dbSNP
rs920158566 5451 dbSNP
rs1416789388 5453 dbSNP
rs1195594832 5463 dbSNP
rs1479214423 5470 dbSNP
rs1345395321 5476 dbSNP
rs546124935 5479 dbSNP
rs1000786650 5481 dbSNP
rs968329362 5491 dbSNP
rs1442301325 5492 dbSNP
rs1279417535 5494 dbSNP
rs1021635416 5498 dbSNP
rs568759315 5503 dbSNP
rs1489164083 5505 dbSNP
rs1010212034 5507 dbSNP
rs1371363125 5508 dbSNP
rs1308035834 5512 dbSNP
rs9080 5518 dbSNP
rs1212011166 5521 dbSNP
rs1198570516 5523 dbSNP
rs1041132548 5527 dbSNP
rs1319285944 5528 dbSNP
rs1280411729 5545 dbSNP
rs1008429823 5549 dbSNP
rs533421973 5556 dbSNP
rs986862017 5567 dbSNP
rs889953528 5568 dbSNP
rs1222095610 5569 dbSNP
rs571042595 5573 dbSNP
rs1474689545 5574 dbSNP
rs1162275114 5577 dbSNP
rs1420479351 5582 dbSNP
rs769009542 5586 dbSNP
rs1328845778 5588 dbSNP
rs1444504776 5591 dbSNP
rs1388781882 5592 dbSNP
rs527288022 5599 dbSNP
rs1354841613 5603 dbSNP
rs1231696448 5604 dbSNP
rs1023550474 5613 dbSNP
rs1336751517 5620 dbSNP
rs1330831218 5621 dbSNP
rs1012181348 5627 dbSNP
rs1436041621 5629 dbSNP
rs1206480256 5630 dbSNP
rs896117258 5645 dbSNP
rs1400948480 5647 dbSNP
rs1050471887 5654 dbSNP
rs1485020357 5672 dbSNP
rs1185435637 5678 dbSNP
rs1056160701 5680 dbSNP
rs1049358 5682 dbSNP
rs1468060860 5688 dbSNP
rs1417759405 5695 dbSNP
rs1376909151 5696 dbSNP
rs886176554 5699 dbSNP
rs1434616040 5704 dbSNP
rs15447 5716 dbSNP
rs1048828830 5718 dbSNP
rs1247794170 5722 dbSNP
rs1315070823 5722 dbSNP
rs931469752 5723 dbSNP
rs920127144 5726 dbSNP
rs376779967 5737 dbSNP
rs527865158 5738 dbSNP
rs1039899519 5739 dbSNP
rs898711045 5746 dbSNP
rs1036670856 5750 dbSNP
rs1216261733 5753 dbSNP
rs942957289 5767 dbSNP
rs1346599235 5778 dbSNP
rs939668308 5779 dbSNP
rs1282069193 5784 dbSNP
rs956758271 5786 dbSNP
rs924000737 5790 dbSNP
rs979577013 5792 dbSNP
rs917692141 5794 dbSNP
rs1476553937 5796 dbSNP
rs1187679541 5801 dbSNP
rs745608528 5812 dbSNP
rs967841503 5812 dbSNP
rs1257022030 5813 dbSNP
rs1400356262 5817 dbSNP
rs1235677277 5818 dbSNP
rs1324535905 5820 dbSNP
rs532960439 5821 dbSNP
rs1298300225 5832 dbSNP
rs960626237 5833 dbSNP
rs1308540573 5836 dbSNP
rs1281868339 5838 dbSNP
rs991860009 5839 dbSNP
rs562199622 5841 dbSNP
rs542334152 5842 dbSNP
rs1345032224 5857 dbSNP
rs1204187522 5859 dbSNP
rs1281684569 5862 dbSNP
rs113464081 5863 dbSNP
rs1449150967 5871 dbSNP
rs1209720384 5879 dbSNP
rs1034974152 5881 dbSNP
rs1453141619 5883 dbSNP
rs1004937995 5893 dbSNP
rs937879527 5901 dbSNP
rs1395772352 5905 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000398637.5 | 3UTR | UUUCCAUAUUAUAUUAGCAAUGACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.65 2.9e-4 0.622 5.9e-4 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.621 4.6e-4 0.590 9.5e-4 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.565 2.5e-3 -0.278 1.0e-1 23 Click to see details
GSE28260 Renal cortex and medulla 0.662 6.9e-3 0.560 2.3e-2 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.478 7.8e-3 0.423 1.8e-2 25 Click to see details
GSE27834 Pluripotent stem cells 0.471 3.3e-2 0.532 1.7e-2 16 Click to see details
GSE38226 Liver fibrosis -0.329 7.3e-2 -0.266 1.2e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.287 8.7e-2 0.280 9.3e-2 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.299 1.0e-1 0.251 1.4e-1 20 Click to see details
GSE14794 Lymphoblastoid cells -0.11 1.5e-1 -0.080 2.3e-1 90 Click to see details
GSE17498 Multiple myeloma -0.132 2.1e-1 -0.085 3.0e-1 40 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.428 2.4e-1 -0.600 1.4e-1 5 Click to see details
GSE21849 B cell lymphoma 0.104 3.0e-1 0.057 3.8e-1 29 Click to see details
GSE21687 Ependynoma primary tumors 0.051 3.4e-1 0.015 4.5e-1 64 Click to see details
GSE17306 Multiple myeloma 0.055 3.5e-1 0.485 2.1e-4 49 Click to see details
GSE32688 Pancreatic cancer -0.041 4.1e-1 0.071 3.5e-1 32 Click to see details
GSE32688 Pancreatic cancer -0.041 4.1e-1 0.071 3.5e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC 0.417 0.05 0.282 0.14 16 Click to see details
PAAD 0.89 0.05 1.000 0.5 4 Click to see details
KIRC -0.25 0.08 -0.304 0.05 32 Click to see details
KIRP -0.224 0.14 -0.252 0.11 26 Click to see details
LUSC -0.219 0.15 -0.125 0.28 25 Click to see details
CHOL -0.465 0.15 -0.464 0.15 7 Click to see details
BLCA -0.273 0.26 -0.024 0.48 8 Click to see details
THCA -0.082 0.31 -0.168 0.15 40 Click to see details
ESCA 0.229 0.31 0.071 0.44 7 Click to see details
STAD 0.121 0.31 0.046 0.43 19 Click to see details
PRAD 0.069 0.4 0.064 0.41 15 Click to see details
LIHC -0.035 0.41 0.047 0.38 46 Click to see details
HNSC 0.03 0.44 0.050 0.4 26 Click to see details
BRCA 0.019 0.46 0.147 0.23 28 Click to see details
KICH 0.016 0.47 0.098 0.33 22 Click to see details
CESC -0.044 0.49 -0.500 0.33 3 Click to see details
CESC -0.044 0.49 -0.500 0.33 3 Click to see details
CESC -0.044 0.49 -0.500 0.33 3 Click to see details
166 hsa-miR-570-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT053484 CD274 CD274 molecule 2 2
MIRT056153 OTUD1 OTU deubiquitinase 1 2 2
MIRT057406 TNKS2 tankyrase 2 2 2
MIRT065096 SLC38A1 solute carrier family 38 member 1 2 2
MIRT073901 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 2 8
MIRT074322 TNRC6A trinucleotide repeat containing 6A 2 8
MIRT077514 UBE2Z ubiquitin conjugating enzyme E2 Z 2 4
MIRT082532 CALM3 calmodulin 3 2 2
MIRT084575 BCL2L11 BCL2 like 11 2 4
MIRT092028 ABHD5 abhydrolase domain containing 5 2 6
MIRT099121 MYLIP myosin regulatory light chain interacting protein 2 8
MIRT102992 RBM33 RNA binding motif protein 33 2 8
MIRT105434 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT109568 KLHL15 kelch like family member 15 2 2
MIRT145281 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT150161 MIDN midnolin 2 2
MIRT167432 TRIP13 thyroid hormone receptor interactor 13 2 2
MIRT168486 HSPA1B heat shock protein family A (Hsp70) member 1B 2 4
MIRT172128 KLF10 Kruppel like factor 10 4 2
MIRT215596 SUB1 SUB1 homolog, transcriptional regulator 2 2
MIRT259928 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT274852 ATXN7L3B ataxin 7 like 3B 2 4
MIRT290491 C18ORF25 chromosome 18 open reading frame 25 2 2
MIRT290941 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 4
MIRT322703 BAG4 BCL2 associated athanogene 4 2 2
MIRT358568 CANX calnexin 2 2
MIRT381250 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT442077 NDRG1 N-myc downstream regulated 1 2 2
MIRT442943 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT444267 ATOX1 antioxidant 1 copper chaperone 2 2
MIRT444365 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT444863 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT444871 ISPD isoprenoid synthase domain containing 2 2
MIRT445077 CXXC4 CXXC finger protein 4 2 2
MIRT445717 NAP1L6 nucleosome assembly protein 1 like 6 2 2
MIRT445945 SCML4 Scm polycomb group protein like 4 2 2
MIRT446054 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT446704 FUT10 fucosyltransferase 10 2 2
MIRT446726 SPAG11A sperm associated antigen 11A 2 2
MIRT447147 HHIP hedgehog interacting protein 2 2
MIRT447566 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT448698 KLRC4 killer cell lectin like receptor C4 2 2
MIRT448778 GNA13 G protein subunit alpha 13 2 2
MIRT449290 GMNC geminin coiled-coil domain containing 2 2
MIRT449673 SOX3 SRY-box 3 2 2
MIRT450020 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT450089 OR2A4 olfactory receptor family 2 subfamily A member 4 2 2
MIRT450209 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT450271 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450402 TMEM47 transmembrane protein 47 2 2
MIRT450419 BCL2L14 BCL2 like 14 2 2
MIRT450598 EXOC2 exocyst complex component 2 2 2
MIRT450821 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453007 CCDC115 coiled-coil domain containing 115 2 17
MIRT453857 ZNF12 zinc finger protein 12 2 2
MIRT454706 HMGN1 high mobility group nucleosome binding domain 1 2 4
MIRT458699 LEPREL1 prolyl 3-hydroxylase 2 1 1
MIRT465144 TSC22D2 TSC22 domain family member 2 2 2
MIRT468216 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT469657 RAC1 Rac family small GTPase 1 2 2
MIRT470155 PSME3 proteasome activator subunit 3 2 2
MIRT470287 PRDX5 peroxiredoxin 5 2 2
MIRT470296 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT472433 NCBP2 nuclear cap binding protein subunit 2 2 2
MIRT472459 NASP nuclear autoantigenic sperm protein 2 2
MIRT475265 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 2
MIRT476735 FOXN2 forkhead box N2 2 2
MIRT476757 FOXK1 forkhead box K1 2 2
MIRT477549 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT478797 CRTAP cartilage associated protein 2 4
MIRT479661 CD164 CD164 molecule 2 4
MIRT479893 CCDC117 coiled-coil domain containing 117 2 4
MIRT480325 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT481229 ATXN7L3 ataxin 7 like 3 2 2
MIRT484088 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT487507 GRK5 G protein-coupled receptor kinase 5 2 2
MIRT488356 PAX2 paired box 2 2 2
MIRT496746 PDIK1L PDLIM1 interacting kinase 1 like 2 2
MIRT496832 ZNF460 zinc finger protein 460 2 2
MIRT500913 STARD13 StAR related lipid transfer domain containing 13 2 4
MIRT502256 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 4
MIRT504078 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT504890 MRPL51 mitochondrial ribosomal protein L51 2 4
MIRT509834 TACR3 tachykinin receptor 3 2 4
MIRT511989 E2F8 E2F transcription factor 8 2 4
MIRT524543 CDC5L cell division cycle 5 like 2 4
MIRT526673 ZNF791 zinc finger protein 791 2 2
MIRT527410 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT528393 PGK1 phosphoglycerate kinase 1 2 2
MIRT529318 PDE5A phosphodiesterase 5A 2 2
MIRT529844 SMTN smoothelin 2 2
MIRT531461 TNFRSF10B TNF receptor superfamily member 10b 2 4
MIRT535096 PODXL podocalyxin like 2 2
MIRT535294 PHF6 PHD finger protein 6 2 2
MIRT537542 ETS1 ETS proto-oncogene 1, transcription factor 2 2
MIRT540200 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT543416 C5orf42 chromosome 5 open reading frame 42 2 2
MIRT543873 SLC16A9 solute carrier family 16 member 9 2 2
MIRT544393 SMC5 structural maintenance of chromosomes 5 2 2
MIRT544919 MBLAC2 metallo-beta-lactamase domain containing 2 2 2
MIRT546579 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT548834 CHD1 chromodomain helicase DNA binding protein 1 2 4
MIRT550787 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT553434 TPM3 tropomyosin 3 2 2
MIRT557467 GRB10 growth factor receptor bound protein 10 2 4
MIRT558065 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 2
MIRT558258 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT559205 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT561072 SRRM4 serine/arginine repetitive matrix 4 2 2
MIRT561805 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT563875 PAGR1 PAXIP1 associated glutamate rich protein 1 2 4
MIRT565835 SCML2 Scm polycomb group protein like 2 2 2
MIRT568049 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT572820 MYO1C myosin IC 2 2
MIRT575423 Epg5 ectopic P-granules autophagy protein 5 homolog (C. elegans) 2 4
MIRT576435 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576533 Txlna taxilin alpha 2 2
MIRT611715 EPG5 ectopic P-granules autophagy protein 5 homolog 2 5
MIRT612574 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit 2 2
MIRT613945 IFIT3 interferon induced protein with tetratricopeptide repeats 3 2 2
MIRT614279 WSCD2 WSC domain containing 2 2 2
MIRT615194 CLUAP1 clusterin associated protein 1 2 2
MIRT627995 MTA3 metastasis associated 1 family member 3 2 2
MIRT637069 DENND2C DENN domain containing 2C 2 2
MIRT639912 SLIT1 slit guidance ligand 1 2 2
MIRT642026 MYADM myeloid associated differentiation marker 2 2
MIRT642844 SLC5A8 solute carrier family 5 member 8 2 2
MIRT643706 ZNF736 zinc finger protein 736 2 2
MIRT643835 RBMY1J RNA binding motif protein, Y-linked, family 1, member J 2 2
MIRT644775 RBMY1B RNA binding motif protein, Y-linked, family 1, member B 2 2
MIRT644778 RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 2 2
MIRT644781 RBMY1D RNA binding motif protein, Y-linked, family 1, member D 2 2
MIRT644784 RBMY1E RNA binding motif protein, Y-linked, family 1, member E 2 2
MIRT647495 ZNF639 zinc finger protein 639 2 2
MIRT648248 RBMY1F RNA binding motif protein, Y-linked, family 1, member F 2 2
MIRT648633 LEMD2 LEM domain containing 2 2 2
MIRT654626 PTGFR prostaglandin F receptor 2 2
MIRT656345 MED28 mediator complex subunit 28 2 2
MIRT657354 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT659635 CDKN2AIP CDKN2A interacting protein 2 2
MIRT659651 CDH4 cadherin 4 2 2
MIRT660959 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT664139 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT666038 STRBP spermatid perinuclear RNA binding protein 2 2
MIRT666200 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT681712 GDF6 growth differentiation factor 6 2 2
MIRT683276 ZNF99 zinc finger protein 99 2 2
MIRT690312 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT691642 SLC43A3 solute carrier family 43 member 3 2 2
MIRT692270 GPR157 G protein-coupled receptor 157 2 2
MIRT692840 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT697820 UBQLN1 ubiquilin 1 2 2
MIRT698248 TMEM2 transmembrane protein 2 2 2
MIRT702755 IGF1R insulin like growth factor 1 receptor 2 2
MIRT702918 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT703411 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704857 CD46 CD46 molecule 2 2
MIRT711066 BTD biotinidase 2 2
MIRT717794 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT719676 SPDYE1 speedy/RINGO cell cycle regulator family member E1 2 2
MIRT720300 DDHD1 DDHD domain containing 1 2 2
MIRT723496 WDR33 WD repeat domain 33 2 2
MIRT723934 SVOP SV2 related protein 2 2
MIRT735586 FUT8 fucosyltransferase 8 2 0
MIRT735935 EYA3 EYA transcriptional coactivator and phosphatase 3 3 0
MIRT756075 HDAC1 histone deacetylase 1 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-570 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-570 5-aza-2'-deoxycytidine (5-Aza-CdR) + trichostatin A(TSA) NULL NULL Quantitative real-time PCR gastric cancer AGS cell lines 21960261 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-570-3p Sorafenib 216239 NSC747971 approved sensitive High Hepatocellular Carcinoma cell line (HepG2, Hep-394, Hep-SWX, Huh-7)
hsa-miR-570-3p Doxorubicin 31703 NSC123127 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-570-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-570-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-570-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-570-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-570-3p Paclitaxel 36314 NSC125973 approved resistant cell line (SKVO3ip1)
hsa-miR-570-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-570-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-570-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-570-3p Paclitaxel 36314 NSC125973 approved resistant cell line (SKOV3)
hsa-miR-570-3p Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-570-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-570-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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