miRTarBase - #MIRT065632


—
pre-miRNA Information
pre-miRNA hsa-mir-4742   
Genomic Coordinates chr1: 224398227 - 224398311
Description Homo sapiens miR-4742 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4742-5p
Sequence 1| UCAGGCAAAGGGAUAUUUACAGA |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234293681 4 dbSNP
rs778464201 9 dbSNP
rs758952505 12 dbSNP
rs753463665 16 dbSNP
rs765920862 18 dbSNP
rs1205603801 20 dbSNP
rs756994761 21 dbSNP
Putative Targets

Gene Information
Gene Symbol CLIC4   
Synonyms CLIC4L, H1, MTCLIC, huH1, p64H1
Description chloride intracellular channel 4
Transcript NM_013943   
Expression
Putative miRNA Targets on CLIC4
3'UTR of CLIC4
(miRNA target sites are highlighted)		 
>CLIC4|NM_013943|3'UTR
   1 AATCGCGTTTGTAAAAGAGATGTCTTCATGTCTTCCCCTAAGAATACGCTTTTCCTAACAGGCTACTCCTTCCTGTAGAG
  81 CAGAAATTGTATTTTGCACGAACATGCAGTTATTGAAGATTAGGATCAAGGATAGACAAGGTATAGTAGTTATCTTAAAA
 161 TATACACTCCTAAGCAGTATTATTTTAAAATCCTTTACCCTGGCTACCTCCCCTACCCGGGTTCCCCTCTCTTTAATTTG
 241 GAGACACTCCACCACAAACTTTTCACTTTAGAGGTAGCTTGCCATCTCTCAGGAGCCCTCACCATTGTGTCCATTCACTG
 321 TGTATAGATGGCAGAACTTTTGAGGTGCAATGTTTAATTGTTAAAAATAGTAGCCACGACTTTATCAGGCAGCCCCAAAC
 401 TGGTGCATAATGCATGGTACAAGAAATATTTATGTATTTTTTGGAATTTTGTAATATTTAGTAAGAGTATATGAAAGGAT
 481 TGCTACTGTATCAGAAATATTGTTTCAATTTAGTCTATCCTGGATATGTACTAACGAATATTACCACCAGAGAAGAGAGC
 561 TTTCTACAAAAGTCACTACAGATTTTGCTATATTGCTTTGTAGATAGATTTTTACTTTTGCCTAAAAGCATTTATCCTTC
 641 ATACCAATTGTAACATCTGACACCATGTAGAAGCTAAAAGTTTAGAGGGAGTGAGGGTTTTCTCAAGACCTTCCTCAAGC
 721 ATTTTATCTTTAGAAGAGAAACTGATGGGCACCTGATACTCTGTCTAAATACGTTTGTTATATGTGTTTTGCCCTGTGCC
 801 ATTCATTTGGAACTTTATTGCATTCTTTATTTTAAAAAGCTTGTTTTTACGTAATCATAGAGCTTGCTATTTGTACATCT
 881 GTTGAGCAACACTACATAACTGATTTTTAGTTGACTTAGCTATAGCAGTACAATGATTAGTAATGTAAAAATTAACACAG
 961 AAATTAACCTAAGGAATGAAGGGTGGGTTTGTCAAAATATCAAGTAAATTTTTGTTTCTAAAGTACATTTAATGTAGATG
1041 ACCTAAAGAATGCGTTATCCATCCTATATAAAAGAAAGATAAAACACAGGTCACCAATTTTCTCATTTCACCCCATTTAC
1121 CTTGTATAGAGGATTGTTCATTCCTTTGGGACTAAGTTATAGTTATGGTGAGTGTGTATTTACTGTAGTTTTGCCTGATC
1201 TCACTCATTGCACTTCCTGGAGTTAAATTTTCCAACAGCCATGTTGAGGAATAGCACTCTGCATGTTTTTGTTTTGTTTT
1281 TCGGGGTTTTTTTTAATTGAAGCCCTAAACCAGGAATTATTTGTGTTCTAACAGGAGGATGAACTTGCTGAAAATAAAAC
1361 TTTGCTATGTATTTACTCTTTTTTAAAAGACAAAAGCAAAACCAGACTTTCTACGTACTACTCCAAAGACTGTGATTGTG
1441 ACTATAATACATTTTTGGTAATTTTTTTATACCTAATTTGTATAGGAAGTGCTATTTCTCATAGGCTGTTTCTTGAAATT
1521 TTAAGTTTATTGCTTTAAAATGGCAGTGTTTCTCCCACTTTGATATGCTAACATTTAGTAAGCACTGGCTTTATGAAAGC
1601 GGCTTTTTATAAGTATACTGCATTTTTTGAGCCTATCATTAATTAGCTTAGTATGAAAGATAAGAAAATCTCCATGTTGT
1681 ATCCATTTGGCTCAGGAAGATTCTTTGCCTTACCTTTCTTAGAACTCTTTATTGCTTATCAAAAGTTTGAGTACCCGCTT
1761 GGTTTTTTTTTGGTAATTAAATATTGTATGATTTATCTGGTTCAAGGAAGATGCACTATTCAGTTATCTATTGAGAAATT
1841 ATTTTGCAGTGGTTTTAGTGGGTGAAAATGTCCCATCTGCACCAGTACACAGGCAGGCATTATCATTCTTCACCTACTTT
1921 TTAAATAGTGGCAACTTGGGATTCATTCTGGTGATTCTGAACCTTGCCTCATAGCTTAAAGTATAAAAAAGATTCAAGAG
2001 CAGTGAGGTTTGTTCTTTCCAGTGAATGGTGGACTGAGTGGTGCGAGGTGGAGGGCTAACAAGAGGAAAGAACTACATTC
2081 TTCAGAATACAGTGATGAAAATTCATTTTGAAACTCAAATATTTTCATTTTGGATATTCTCCTGTTTTTATTAAACCAGT
2161 GATTACACCTGGCCATCCCTCTAAATGTTCTAGGAAGGCATGTCTATTGTGATTTTGATGAAGACAGAATTATTTTTCTC
2241 TGTAGAAACACAGATACCACTTTATCAGGGAAGTTAGTCAAATGAAATGGAAATTGGTAAATGGACAAAAGCTAGCTAGT
2321 AAAAAGGACGACCCAGCAACATGCTTTAACCCCATTGTATGTTTGTGGAAAGAGCATAGTTTAACATCTTGAGAAATTTG
2401 GGACATAAAGTTTTCATGGTAGACAGTTCATGCAGTATATGAATTGCCATAATGGAAATAATCTGATTTTATTTTTACAA
2481 CTAACATCCATTCCCCTTCATTTAAACACCTTTTGTGTTTTACTTCAGTGAGGAGATTGGAGTCTGAATGGATCTGTTTT
2561 CCAAGAGATTCTGAGAAATTTTTGTATTCAGCAGTTGGAAAGCTCTCTATTCTAGTTGATAAAACTTCCCTTTTTTGATG
2641 TAGATGCAGATATTCTATACAGTTCTGTTGTCTTTTACTAGGACTGTAAACTTTTGTGATAAAATTCAAATAAGATTTTA
2721 TTTCTTGGTAATTTTGGCTTTCACAATTTATCTTTAAATCCTTGAGCAATCTGTATACAATTAAGAGATTTCTGACATTT
2801 ATTCTTACACTAAATGGATCAACTCTAGGATTTAGGCATGTTAACTTCTGTTGTGTTTTGAATCTCTCCAGAGTTGCATG
2881 TAGATAGCATTTATTTCTGTGCCCTTAAACCCATTTAGAAAATAACTACAAAGTAAAAATGTAGAGGAAATAGAAATGTA
2961 TTTTTTCATGAACATTTTGATACAAATTTCATCATTTAATGATTCACCAATTTCTTGCATTAATTTGAATTTAAGCATTT
3041 AATTCAAAGAGAGGGGAGCATCCATTATTGATACATGTGGGCTTTTAAAAACTCCATCCTTTATAAATAGTCAAGGTTTG
3121 GGCCACACAAAGTATATTTTTATCATGGAAAAATTTCAACTCCTCAAGCCGTAATGTTGAACAGAATTGGAGTATTTTCT
3201 TTATAATTTCTTGAACAGGCAAATGAAAGCTTATTATAGAATGCATGTATTTTCTTTTATCTTTGGAACATCAGCACCAG
3281 TATATTGCTGGCAGCTATTGTATTAAAAAATAAAGTATATTTTCACTATCATAAAGGATTCTTTTTTCCCCCCTCATGAA
3361 AATAAACAACAACTTGGGGTAAAAGTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agACAU---UUAUAGGGAAACGGACu 5'
            ||||   | |:|  :|||||||| 
Target 5' tgTGTATTTACTGTAGTTTTGCCTGa 3'
 1173 - 1198 161.00 -18.10
2 
miRNA  3' agACAUUUAU------AGGGAAACGGAcu 5'
            ||||:|||      | |:|||||||  
Target 5' ttTGTAGATAGATTTTTACTTTTGCCTaa 3'
 597 - 625 151.00 -15.50
3 
miRNA  3' agacaUUUAUAGGGAAACGGAcu 5'
               :|| || :||||||||  
Target 5' ctcagGAAGAT-TCTTTGCCTta 3'
 1691 - 1712 141.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8909268 1 COSMIC
COSN30111835 5 COSMIC
COSN30475732 6 COSMIC
COSN31550022 8 COSMIC
COSN26970989 33 COSMIC
COSN30165362 79 COSMIC
COSN30506475 100 COSMIC
COSN30514685 101 COSMIC
COSN31558818 160 COSMIC
COSN30538173 161 COSMIC
COSN31541226 176 COSMIC
COSN18714703 291 COSMIC
COSN32062590 375 COSMIC
COSN32062591 378 COSMIC
COSN7215441 478 COSMIC
COSN26219410 694 COSMIC
COSN24298269 921 COSMIC
COSN28752975 1037 COSMIC
COSN21077463 1180 COSMIC
COSN25882434 1287 COSMIC
COSN20090177 1288 COSMIC
COSN1101876 1680 COSMIC
COSN15004684 1704 COSMIC
COSN20625928 1763 COSMIC
COSN4749841 1786 COSMIC
COSN21081169 1806 COSMIC
COSN26769251 1815 COSMIC
COSN1441958 1819 COSMIC
COSN16155576 1872 COSMIC
COSN7215442 2123 COSMIC
COSN21981248 2203 COSMIC
COSN6032526 2522 COSMIC
COSN23790776 2787 COSMIC
COSN26506815 2851 COSMIC
COSN6032527 2886 COSMIC
COSN26640505 2888 COSMIC
COSN31519975 2945 COSMIC
COSN22529759 3107 COSMIC
COSN8638032 3113 COSMIC
COSN22093290 3211 COSMIC
COSN19660602 3352 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1470245666 5 dbSNP
rs200696203 6 dbSNP
rs1404219853 7 dbSNP
rs574940681 8 dbSNP
rs1313677879 9 dbSNP
rs1424511831 12 dbSNP
rs866630882 14 dbSNP
rs1164624222 16 dbSNP
rs747840838 17 dbSNP
rs377413211 20 dbSNP
rs1027758221 21 dbSNP
rs1330361771 23 dbSNP
rs1328480867 30 dbSNP
rs1336553875 31 dbSNP
rs1444525918 36 dbSNP
rs773508748 37 dbSNP
rs754205347 40 dbSNP
rs576642201 41 dbSNP
rs752815230 45 dbSNP
rs766734384 48 dbSNP
rs114651082 49 dbSNP
rs759642536 51 dbSNP
rs1181262554 59 dbSNP
rs1364330266 63 dbSNP
rs1473506833 65 dbSNP
rs553847050 66 dbSNP
rs1362143822 76 dbSNP
rs1303714177 99 dbSNP
rs1404539062 99 dbSNP
rs758538646 100 dbSNP
rs187308024 101 dbSNP
rs1328545161 103 dbSNP
rs966306554 105 dbSNP
rs977647120 108 dbSNP
rs1281907550 115 dbSNP
rs1160588899 117 dbSNP
rs1031851678 137 dbSNP
rs956416664 138 dbSNP
rs754433766 160 dbSNP
rs554573942 170 dbSNP
rs1468606373 174 dbSNP
rs943596505 196 dbSNP
rs1483899873 197 dbSNP
rs561821985 211 dbSNP
rs1268095611 218 dbSNP
rs752124021 219 dbSNP
rs1176814469 220 dbSNP
rs192079959 227 dbSNP
rs1460623807 228 dbSNP
rs1380965682 229 dbSNP
rs1167525585 230 dbSNP
rs1371615135 232 dbSNP
rs1412050972 237 dbSNP
rs113288422 254 dbSNP
rs1305598484 257 dbSNP
rs1348110863 266 dbSNP
rs1230109550 272 dbSNP
rs1305220075 274 dbSNP
rs1288951127 285 dbSNP
rs184437183 291 dbSNP
rs550159891 305 dbSNP
rs1290969014 311 dbSNP
rs781734525 312 dbSNP
rs187534577 319 dbSNP
rs939131911 323 dbSNP
rs1269610071 326 dbSNP
rs1036296256 342 dbSNP
rs575879087 349 dbSNP
rs543164112 351 dbSNP
rs1432029706 357 dbSNP
rs1162005202 361 dbSNP
rs930686678 368 dbSNP
rs866093165 372 dbSNP
rs540486196 378 dbSNP
rs1183494587 379 dbSNP
rs1429262710 381 dbSNP
rs1297889741 386 dbSNP
rs1366848804 392 dbSNP
rs1243532143 394 dbSNP
rs1479654811 397 dbSNP
rs1290713163 406 dbSNP
rs889241268 407 dbSNP
rs1008054520 409 dbSNP
rs1258882454 414 dbSNP
rs1018947359 417 dbSNP
rs1466186543 423 dbSNP
rs533766815 427 dbSNP
rs998954701 431 dbSNP
rs570117692 433 dbSNP
rs547389777 434 dbSNP
rs1411174132 436 dbSNP
rs1424744640 437 dbSNP
rs1167606169 445 dbSNP
rs559115655 449 dbSNP
rs957842911 456 dbSNP
rs1456265005 459 dbSNP
rs779347784 464 dbSNP
rs1308543640 468 dbSNP
rs1390429262 475 dbSNP
rs1344874213 478 dbSNP
rs1217408887 489 dbSNP
rs1313896933 494 dbSNP
rs1379694907 509 dbSNP
rs1303065410 520 dbSNP
rs532928003 528 dbSNP
rs755867279 529 dbSNP
rs1226923116 530 dbSNP
rs144790131 536 dbSNP
rs969039379 537 dbSNP
rs1466288658 539 dbSNP
rs1202069453 545 dbSNP
rs1484064520 554 dbSNP
rs779880046 560 dbSNP
rs1268795924 561 dbSNP
rs571161846 569 dbSNP
rs1406458040 575 dbSNP
rs939187518 577 dbSNP
rs554302929 582 dbSNP
rs1193448366 583 dbSNP
rs971874141 589 dbSNP
rs1426262552 591 dbSNP
rs753063089 593 dbSNP
rs919206814 595 dbSNP
rs930550358 597 dbSNP
rs550358484 599 dbSNP
rs1372305978 601 dbSNP
rs889119285 601 dbSNP
rs146746536 603 dbSNP
rs1040450684 623 dbSNP
rs901916932 626 dbSNP
rs1431097060 627 dbSNP
rs1278206350 631 dbSNP
rs535926821 636 dbSNP
rs748841307 642 dbSNP
rs41292297 648 dbSNP
rs1231572462 654 dbSNP
rs1482921129 655 dbSNP
rs1276699719 656 dbSNP
rs1183609752 663 dbSNP
rs1254589719 667 dbSNP
rs1364425334 672 dbSNP
rs1171430829 674 dbSNP
rs1053209625 676 dbSNP
rs1425467865 676 dbSNP
rs1167853486 680 dbSNP
rs1434153755 684 dbSNP
rs893427501 689 dbSNP
rs1309776743 694 dbSNP
rs9259 697 dbSNP
rs1434433978 719 dbSNP
rs1274294648 722 dbSNP
rs1368362256 723 dbSNP
rs1023180277 742 dbSNP
rs539817300 752 dbSNP
rs148896762 766 dbSNP
rs377154979 773 dbSNP
rs1206232257 774 dbSNP
rs575889264 784 dbSNP
rs960433933 787 dbSNP
rs1229420177 788 dbSNP
rs971927839 790 dbSNP
rs546218990 797 dbSNP
rs919083081 802 dbSNP
rs1320030727 814 dbSNP
rs543226277 823 dbSNP
rs562912370 826 dbSNP
rs41292299 851 dbSNP
rs1170196775 852 dbSNP
rs1363674626 858 dbSNP
rs1404737330 877 dbSNP
rs12726765 878 dbSNP
rs12731450 879 dbSNP
rs910442187 884 dbSNP
rs57063413 888 dbSNP
rs1331812102 890 dbSNP
rs1040338298 896 dbSNP
rs1438699950 905 dbSNP
rs923391579 906 dbSNP
rs193003203 914 dbSNP
rs1229640429 921 dbSNP
rs1300314569 923 dbSNP
rs376218951 926 dbSNP
rs748182086 933 dbSNP
rs747222956 945 dbSNP
rs1291207822 948 dbSNP
rs1011716166 957 dbSNP
rs1212961671 962 dbSNP
rs1450880992 967 dbSNP
rs1168864001 970 dbSNP
rs1449660124 973 dbSNP
rs143619825 977 dbSNP
rs1383206546 979 dbSNP
rs1163842013 980 dbSNP
rs906098266 984 dbSNP
rs1403141539 994 dbSNP
rs1318569049 1001 dbSNP
rs12036492 1004 dbSNP
rs141863886 1005 dbSNP
rs1322787736 1008 dbSNP
rs1339142142 1009 dbSNP
rs1350458942 1009 dbSNP
rs960486259 1015 dbSNP
rs1226075939 1018 dbSNP
rs1266987225 1043 dbSNP
rs532011279 1054 dbSNP
rs1367120189 1055 dbSNP
rs1026029800 1062 dbSNP
rs951985197 1069 dbSNP
rs1377036159 1071 dbSNP
rs984618550 1077 dbSNP
rs910486985 1078 dbSNP
rs550420277 1079 dbSNP
rs1291207958 1082 dbSNP
rs1316772846 1085 dbSNP
rs76330923 1091 dbSNP
rs1166916940 1094 dbSNP
rs1322811183 1098 dbSNP
rs1400264467 1119 dbSNP
rs1395829524 1127 dbSNP
rs1335224344 1130 dbSNP
rs964590829 1151 dbSNP
rs976092875 1155 dbSNP
rs1270363533 1161 dbSNP
rs923277071 1163 dbSNP
rs1229632581 1166 dbSNP
rs185865052 1167 dbSNP
rs1343793785 1169 dbSNP
rs1200858571 1171 dbSNP
rs1258065228 1179 dbSNP
rs1236592093 1185 dbSNP
rs1481940942 1192 dbSNP
rs1053623016 1196 dbSNP
rs1252359649 1205 dbSNP
rs1472966733 1210 dbSNP
rs1161399252 1213 dbSNP
rs1376163567 1217 dbSNP
rs914636955 1236 dbSNP
rs1173356178 1244 dbSNP
rs947563982 1246 dbSNP
rs1428217914 1255 dbSNP
rs547620528 1262 dbSNP
rs41292301 1264 dbSNP
rs906150879 1283 dbSNP
rs1298511008 1287 dbSNP
rs189128687 1287 dbSNP
rs775712900 1289 dbSNP
rs1057363206 1295 dbSNP
rs557696059 1298 dbSNP
rs181024620 1305 dbSNP
rs1275289446 1306 dbSNP
rs1483971814 1329 dbSNP
rs183897018 1340 dbSNP
rs1265421193 1361 dbSNP
rs993135158 1362 dbSNP
rs1026502856 1365 dbSNP
rs1379522006 1368 dbSNP
rs1428241831 1374 dbSNP
rs755818518 1375 dbSNP
rs1168304446 1379 dbSNP
rs1371752180 1389 dbSNP
rs1432218796 1392 dbSNP
rs1156894071 1393 dbSNP
rs1390523969 1394 dbSNP
rs1292276088 1411 dbSNP
rs1389467166 1412 dbSNP
rs1386778222 1414 dbSNP
rs1302967225 1415 dbSNP
rs887520414 1416 dbSNP
rs1006500037 1424 dbSNP
rs1298112213 1426 dbSNP
rs1344014657 1434 dbSNP
rs1219356040 1436 dbSNP
rs1017434621 1446 dbSNP
rs1336305173 1451 dbSNP
rs1488200380 1454 dbSNP
rs1210453754 1455 dbSNP
rs964475246 1459 dbSNP
rs542461970 1460 dbSNP
rs1357705248 1462 dbSNP
rs1188134984 1463 dbSNP
rs1391227192 1469 dbSNP
rs1430655235 1473 dbSNP
rs975977081 1479 dbSNP
rs1368337497 1481 dbSNP
rs139150152 1486 dbSNP
rs1284792991 1490 dbSNP
rs1372723975 1499 dbSNP
rs201015135 1516 dbSNP
rs1227056036 1517 dbSNP
rs573541373 1524 dbSNP
rs1290799321 1542 dbSNP
rs796804231 1544 dbSNP
rs1433966459 1547 dbSNP
rs367587210 1551 dbSNP
rs1320796653 1553 dbSNP
rs764242343 1554 dbSNP
rs878924267 1555 dbSNP
rs1203500751 1564 dbSNP
rs1277473271 1567 dbSNP
rs1030175150 1579 dbSNP
rs1465365877 1584 dbSNP
rs1169682342 1595 dbSNP
rs1245658179 1597 dbSNP
rs1211817102 1600 dbSNP
rs749264261 1601 dbSNP
rs188432629 1602 dbSNP
rs1487059513 1610 dbSNP
rs1179895621 1612 dbSNP
rs1414167349 1614 dbSNP
rs914671802 1618 dbSNP
rs1171711122 1623 dbSNP
rs947487564 1634 dbSNP
rs751589829 1635 dbSNP
rs1422814266 1636 dbSNP
rs1456246585 1656 dbSNP
rs757845217 1658 dbSNP
rs980718730 1662 dbSNP
rs1346542697 1673 dbSNP
rs1335141680 1682 dbSNP
rs927451135 1686 dbSNP
rs1302007384 1695 dbSNP
rs768102635 1696 dbSNP
rs1408132541 1701 dbSNP
rs750916688 1715 dbSNP
rs11538925 1716 dbSNP
rs1286371917 1720 dbSNP
rs1327165442 1731 dbSNP
rs1227794895 1741 dbSNP
rs1269029910 1744 dbSNP
rs552796592 1757 dbSNP
rs562265910 1758 dbSNP
rs1047381723 1763 dbSNP
rs1250164103 1763 dbSNP
rs577629336 1771 dbSNP
rs1471986411 1773 dbSNP
rs1182210247 1778 dbSNP
rs1409755038 1787 dbSNP
rs1412446742 1789 dbSNP
rs1174890578 1802 dbSNP
rs887561951 1803 dbSNP
rs1005971253 1804 dbSNP
rs1278950719 1805 dbSNP
rs1482432560 1810 dbSNP
rs1306119216 1814 dbSNP
rs1349739924 1820 dbSNP
rs1017737630 1831 dbSNP
rs1202491735 1832 dbSNP
rs1289110564 1846 dbSNP
rs143175108 1850 dbSNP
rs1217747530 1853 dbSNP
rs1278182360 1863 dbSNP
rs1313158512 1876 dbSNP
rs1483308272 1883 dbSNP
rs1213394840 1891 dbSNP
rs1273133240 1896 dbSNP
rs1482994211 1898 dbSNP
rs1206462366 1903 dbSNP
rs1198102654 1905 dbSNP
rs997279353 1920 dbSNP
rs1190273363 1926 dbSNP
rs1425361782 1941 dbSNP
rs1478910640 1951 dbSNP
rs1455435924 1957 dbSNP
rs1412697724 1959 dbSNP
rs1166437414 1964 dbSNP
rs1173356130 1969 dbSNP
rs780506064 1979 dbSNP
rs577471547 1984 dbSNP
rs867240456 1991 dbSNP
rs530498678 1996 dbSNP
rs1330794993 2001 dbSNP
rs748973197 2019 dbSNP
rs1427897766 2020 dbSNP
rs955941585 2027 dbSNP
rs754581422 2029 dbSNP
rs989254006 2039 dbSNP
rs1371938853 2045 dbSNP
rs1295918574 2046 dbSNP
rs1021626856 2052 dbSNP
rs1206577605 2058 dbSNP
rs1371264216 2061 dbSNP
rs1449387909 2065 dbSNP
rs1220120533 2071 dbSNP
rs969087355 2073 dbSNP
rs1469565610 2076 dbSNP
rs778543134 2081 dbSNP
rs1333166171 2099 dbSNP
rs1379374304 2102 dbSNP
rs1397275757 2104 dbSNP
rs747588556 2106 dbSNP
rs376138755 2114 dbSNP
rs1411463877 2116 dbSNP
rs992979449 2119 dbSNP
rs1340938634 2126 dbSNP
rs918875116 2142 dbSNP
rs1395274182 2173 dbSNP
rs1276091690 2174 dbSNP
rs1443447775 2176 dbSNP
rs1318772309 2182 dbSNP
rs1342290990 2199 dbSNP
rs181248401 2205 dbSNP
rs12439 2207 dbSNP
rs185706896 2213 dbSNP
rs1228217614 2215 dbSNP
rs1290029101 2221 dbSNP
rs1336284383 2224 dbSNP
rs1206506859 2225 dbSNP
rs1246959998 2248 dbSNP
rs1453103503 2251 dbSNP
rs908885236 2257 dbSNP
rs1235695711 2261 dbSNP
rs1472450710 2267 dbSNP
rs773165968 2269 dbSNP
rs1038775091 2285 dbSNP
rs1463078462 2287 dbSNP
rs76272718 2295 dbSNP
rs182096843 2299 dbSNP
rs1383152605 2301 dbSNP
rs1051540889 2312 dbSNP
rs891748429 2316 dbSNP
rs1294437599 2317 dbSNP
rs1336312383 2320 dbSNP
rs1010159906 2321 dbSNP
rs1390824586 2323 dbSNP
rs1021929565 2330 dbSNP
rs968761562 2331 dbSNP
rs547617998 2335 dbSNP
rs1441621305 2342 dbSNP
rs1188248802 2345 dbSNP
rs1259449906 2351 dbSNP
rs1034457730 2362 dbSNP
rs187649689 2373 dbSNP
rs1406460670 2375 dbSNP
rs1180049786 2377 dbSNP
rs1411286992 2383 dbSNP
rs960100058 2386 dbSNP
rs1160498089 2392 dbSNP
rs1004265966 2404 dbSNP
rs771829107 2430 dbSNP
rs1320240062 2435 dbSNP
rs918760474 2440 dbSNP
rs1363492290 2444 dbSNP
rs951596230 2445 dbSNP
rs4649025 2448 dbSNP
rs1287206906 2451 dbSNP
rs1335811221 2455 dbSNP
rs1299413794 2457 dbSNP
rs1272714745 2462 dbSNP
rs879098284 2472 dbSNP
rs1211268755 2479 dbSNP
rs910099078 2481 dbSNP
rs1482053596 2482 dbSNP
rs1204319518 2498 dbSNP
rs1249975069 2499 dbSNP
rs1243507055 2503 dbSNP
rs1263606369 2518 dbSNP
rs1358298162 2526 dbSNP
rs1388637381 2543 dbSNP
rs1376076042 2545 dbSNP
rs941727279 2551 dbSNP
rs764212388 2552 dbSNP
rs1377620934 2554 dbSNP
rs1428440573 2561 dbSNP
rs1307950603 2565 dbSNP
rs1038661016 2570 dbSNP
rs921718650 2572 dbSNP
rs1463404524 2602 dbSNP
rs1190722424 2603 dbSNP
rs1330105090 2605 dbSNP
rs1248941030 2606 dbSNP
rs1234525892 2610 dbSNP
rs762341004 2610 dbSNP
rs1305413317 2613 dbSNP
rs1202275544 2617 dbSNP
rs774543556 2619 dbSNP
rs1251748356 2632 dbSNP
rs1481007856 2635 dbSNP
rs1185421504 2636 dbSNP
rs1197579729 2654 dbSNP
rs933070509 2662 dbSNP
rs1468235751 2666 dbSNP
rs1051423078 2678 dbSNP
rs1194483786 2683 dbSNP
rs891637046 2684 dbSNP
rs1159111785 2692 dbSNP
rs1448044813 2695 dbSNP
rs41302009 2711 dbSNP
rs1042998132 2712 dbSNP
rs1463093066 2726 dbSNP
rs1291323428 2728 dbSNP
rs182407625 2746 dbSNP
rs904421242 2761 dbSNP
rs186887857 2768 dbSNP
rs1362774213 2772 dbSNP
rs190120249 2776 dbSNP
rs959989547 2777 dbSNP
rs1014355577 2780 dbSNP
rs1025705370 2788 dbSNP
rs1242480839 2797 dbSNP
rs1385306355 2798 dbSNP
rs368561148 2818 dbSNP
rs1214627013 2826 dbSNP
rs1255049590 2827 dbSNP
rs1463837409 2831 dbSNP
rs551743573 2837 dbSNP
rs1186247955 2842 dbSNP
rs1262825250 2843 dbSNP
rs1430855348 2847 dbSNP
rs761825913 2849 dbSNP
rs182679139 2857 dbSNP
rs964636767 2865 dbSNP
rs1385925783 2868 dbSNP
rs974420893 2872 dbSNP
rs1289272391 2879 dbSNP
rs577689356 2884 dbSNP
rs1394279093 2889 dbSNP
rs1255630906 2896 dbSNP
rs750976992 2909 dbSNP
rs1354908866 2916 dbSNP
rs1210427463 2928 dbSNP
rs1233917651 2941 dbSNP
rs765916395 2943 dbSNP
rs1275312226 2959 dbSNP
rs796540529 2963 dbSNP
rs1268527720 2969 dbSNP
rs1215297076 2971 dbSNP
rs188356585 2974 dbSNP
rs1487049698 2980 dbSNP
rs1198971239 2995 dbSNP
rs987195391 3011 dbSNP
rs912951502 3015 dbSNP
rs1475260769 3030 dbSNP
rs538756773 3031 dbSNP
rs557081512 3035 dbSNP
rs1443115686 3036 dbSNP
rs758090207 3039 dbSNP
rs1399803952 3043 dbSNP
rs945926414 3045 dbSNP
rs1346819254 3048 dbSNP
rs1464299485 3048 dbSNP
rs1312216576 3052 dbSNP
rs1375941823 3052 dbSNP
rs1415513495 3056 dbSNP
rs1043270701 3059 dbSNP
rs754570751 3065 dbSNP
rs1223496953 3067 dbSNP
rs1307889729 3079 dbSNP
rs1319117896 3081 dbSNP
rs1208396578 3097 dbSNP
rs904474994 3099 dbSNP
rs1486308092 3108 dbSNP
rs1182059601 3117 dbSNP
rs1249060021 3129 dbSNP
rs937242424 3133 dbSNP
rs1055683988 3135 dbSNP
rs1409635387 3146 dbSNP
rs1410476780 3148 dbSNP
rs1354267963 3149 dbSNP
rs1431253992 3158 dbSNP
rs895831394 3160 dbSNP
rs1473775053 3164 dbSNP
rs1449257810 3166 dbSNP
rs1014237885 3171 dbSNP
rs575355416 3172 dbSNP
rs193192915 3175 dbSNP
rs1298982307 3193 dbSNP
rs775944772 3196 dbSNP
rs1375749333 3202 dbSNP
rs1300752996 3204 dbSNP
rs147516039 3205 dbSNP
rs372946615 3206 dbSNP
rs1349032262 3209 dbSNP
rs1169730332 3216 dbSNP
rs1237232481 3227 dbSNP
rs1403687083 3238 dbSNP
rs796395111 3247 dbSNP
rs1204551274 3250 dbSNP
rs964142541 3258 dbSNP
rs1307329634 3260 dbSNP
rs975644740 3263 dbSNP
rs1029840962 3276 dbSNP
rs1395525830 3279 dbSNP
rs1455364828 3293 dbSNP
rs1166653274 3302 dbSNP
rs1409484280 3311 dbSNP
rs954399031 3311 dbSNP
rs987081079 3330 dbSNP
rs1356331921 3332 dbSNP
rs1139995 3333 dbSNP
rs913011893 3342 dbSNP
rs945780266 3344 dbSNP
rs978494046 3346 dbSNP
rs1443493049 3348 dbSNP
rs1268959837 3351 dbSNP
rs1348478816 3353 dbSNP
rs35169449 3358 dbSNP
rs1215639495 3368 dbSNP
rs761194813 3378 dbSNP
rs185491072 3380 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 25932.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agacAUUUAUAGGGAAACGGACu 5'
              | | |:|  :|||||||| 
Target 5' --auUUACUGUAGUUUUGCCUGa 3'
 		1 - 21
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 25932.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065668. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000374379.4 | 3UTR | AUUUACUGUAGUUUUGCCUGAUCUCACUCAUUGCACUUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000374379.4 | 3UTR | UUACUGUAGUUUUGCCUGAUCUCACUCAUUGCACUUCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065668
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_7
Location of target site ENST00000374379.4 | 3UTR | AUUUACUGUAGUUUUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000374379.4 | 3UTR | AUUUACUGUAGUUUUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
70 hsa-miR-4742-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT065632 CLIC4 chloride intracellular channel 4 2 4
MIRT068170 TXLNA taxilin alpha 2 2
MIRT119024 TSN translin 2 2
MIRT165212 GRAMD3 GRAM domain containing 2B 2 2
MIRT175254 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT213228 REST RE1 silencing transcription factor 2 6
MIRT296337 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT316776 FOXC1 forkhead box C1 2 2
MIRT453943 XRCC6 X-ray repair cross complementing 6 2 6
MIRT454599 RPL13A ribosomal protein L13a 2 2
MIRT458485 RMI1 RecQ mediated genome instability 1 2 6
MIRT458650 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459240 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT461008 SYT7 synaptotagmin 7 2 2
MIRT462026 RIF1 replication timing regulatory factor 1 2 2
MIRT462103 TMEM214 transmembrane protein 214 2 2
MIRT463255 ZIC5 Zic family member 5 2 4
MIRT465190 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT470507 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT472356 TSPAN1 tetraspanin 1 2 2
MIRT473260 MIDN midnolin 2 2
MIRT477527 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT485182 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 4
MIRT486461 MDM2 MDM2 proto-oncogene 2 2
MIRT492760 PER1 period circadian clock 1 2 8
MIRT496703 TRIM39 tripartite motif containing 39 2 2
MIRT497227 MORC2 MORC family CW-type zinc finger 2 2 2
MIRT499582 INTU inturned planar cell polarity protein 2 4
MIRT504081 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT505484 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT513255 FBXO17 F-box protein 17 2 2
MIRT525061 FRK fyn related Src family tyrosine kinase 2 2
MIRT528798 RAB32 RAB32, member RAS oncogene family 2 2
MIRT534357 SFT2D2 SFT2 domain containing 2 2 2
MIRT538731 CAPN1 calpain 1 2 2
MIRT550792 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT553994 SRPR SRP receptor alpha subunit 2 4
MIRT568102 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT570107 SLC18B1 solute carrier family 18 member B1 2 2
MIRT570823 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT572004 HMGB1 high mobility group box 1 2 2
MIRT572352 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT609716 TMEM132C transmembrane protein 132C 2 2
MIRT613982 LRRC40 leucine rich repeat containing 40 2 2
MIRT620740 CCL16 C-C motif chemokine ligand 16 2 2
MIRT625074 C15orf41 chromosome 15 open reading frame 41 2 4
MIRT627941 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT629941 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT633396 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT635846 ZNF264 zinc finger protein 264 2 2
MIRT638086 ZNF652 zinc finger protein 652 2 2
MIRT643996 TCHP trichoplein keratin filament binding 2 2
MIRT660020 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT660161 BRCC3 BRCA1/BRCA2-containing complex subunit 3 2 2
MIRT668887 CSRP1 cysteine and glycine rich protein 1 2 2
MIRT676729 METTL14 methyltransferase like 14 2 2
MIRT677210 MURC caveolae associated protein 4 2 2
MIRT685949 PTGIS prostaglandin I2 synthase 2 2
MIRT687816 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT689900 SOD2 superoxide dismutase 2 2 2
MIRT698214 TMEM248 transmembrane protein 248 2 2
MIRT698279 TMEM2 transmembrane protein 2 2 2
MIRT698758 STK4 serine/threonine kinase 4 2 2
MIRT698789 STK38 serine/threonine kinase 38 2 2
MIRT703152 GPR137C G protein-coupled receptor 137C 2 2
MIRT704408 CTPS1 CTP synthase 1 2 2
MIRT705067 C4orf32 family with sequence similarity 241 member A 2 2
MIRT710201 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT714495 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT720082 TNRC6B trinucleotide repeat containing 6B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4742-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4742-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4742-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-4742-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4742-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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