miRTarBase - #MIRT066666


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pre-miRNA Information
pre-miRNA hsa-mir-382   
Genomic Coordinates chr14: 101054306 - 101054381
Synonyms MIRN382, hsa-mir-382, MIR382
Description Homo sapiens miR-382 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-382-5p
Sequence 11| GAAGUUGUUCGUGGUGGAUUCG |32
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs192719529 5 dbSNP
rs764920693 10 dbSNP
rs752396166 11 dbSNP
rs762649016 21 dbSNP
rs764006384 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DYRK2   
Synonyms -
Description dual specificity tyrosine phosphorylation regulated kinase 2
Transcript NM_003583   
Other Transcripts NM_006482   
Expression
Putative miRNA Targets on DYRK2
3'UTR of DYRK2
(miRNA target sites are highlighted)		 
>DYRK2|NM_003583|3'UTR
   1 GCTCACGTCCCCTGATGCTGGTAACCTGAAAGATACGACATTGCTGAGCCTTACTGGGTTGAAAAGGAGTAGCTCAGACC
  81 TGTTTTTATTTGCTCAATAACTCTACTCATTTGTATCTTTTCAGCACTTAATTTTAATGTAAGAAAGTTGTTCATTTTGT
 161 TTTTATAAAATACATGAGGACAATGCTTTAAGTTTTTATACTTTCAGAAACTTTTTGTGTTCTAAAAGTACAATGAGCCT
 241 TACTGTATTTAGTGTGGCAGAATAATAACATCAGTGGCAGGCCACTGATTACTTCATGACTGCCACGCATTTACAGATTG
 321 GTGTCAAAGACATTCACTATGTTTTTATGGTTCATGTTATATCCTCCCCAGGGTGACAGCCCCTTAAGGCCCTCCTTTTC
 401 CCTCCATGCTCCAGGTCCATGCACAGGTGTAGCATGTCCTGCTTCCGTTTTTCATAAATTAATCTGGGTGTTGGGGGTAG
 481 TGGGAGGAGAACGGTCAGAATCAAAGTGACATTCTAAGAAAAACTGTACCTTAGAGATTTTCCTCTAGTGCTCAAACAAA
 561 TACAAAATAAGATCCCCAAGGTTTAAACTGCCCAGTTAGCATTCTGACATTCTAAAAGCCGGCAAAGCAGCTTTTAGTGG
 641 ATAAATGGGAATGGAAACGTGTGTGTTCCTCCAAATTTTCTAGTATGATCGGTGAGCTGTTTTGTAAAGAAGCCTCATAT
 721 TACAGAGTTGCTTTTGCACCTAAATTTAGAATTGTATTCCATGAACTGTTCCTCCCTTTTCTCTGCTTTTCTCCTCTCTG
 801 TTCCTCTTTTAATACCACACGTCTGTTGCTTGCATTTAGTTTGTCTTCTTCCTTCAGCTGTGTATCCCAGACTGTTAATA
 881 CAGAAAAGAGACATTTCAGCTGTGATTATGACCATTGTTTCATATTCCAATTAAAAAAAGAACAGCAGCCTAGCTACTTA
 961 AGGTGGGGATTTCCATAGTTCCAAAGAAGATTTAGCAGATTAGAGTGAGTTCACACTTTTCAGGTGCCACTGTAAGGTTC
1041 TCTCAGCCTGGGAAACTATCAACTCTTTCTTTAAAAAGAAAGAGGGTTGAAAATCCTCTGGACGAACAGAAGTCACTTTG
1121 GCTGTTCAGTAAGGCCAATGTTAACAACACGTTTAGAGGAGGAAAAGTTCAACCTCAAGTTAAATGGTTTGACTTATTCT
1201 TCGTATCATTAGAAGAACCCCAGAGATAGCATTCCTCTATTTTATTTTACTTTCTTTTGGATTGCACTGATTGTTTTTGT
1281 GGGAATGACACTTTATCTGGCAAAGTAACTGAGAGTTTGGTAAAAGAATATTTTCTTCTCTGAATAATAATTATTTTCAC
1361 AGTGAAAATTTCAGTATTTTATCACTAATGTATGAGCAATGATCTATATCAATTTCAAGGCACGTGAAAAAAATTTTTTA
1441 GTATGTGCAATTTAATATAGAAAGATTTCTGCCTGTTTGGACAATAGGTTTTGGGTAGTACAGATTAGGATAAGTAAGCT
1521 TATATATGCACAGAGATTATTGTATTACCTGTAAATTGATTTACAAGTACTTAAAAGCGTGGTCCCCAGTGAGGCCAAGA
1601 AAGTTTCCGGTTAAGTTCTTTAATAATAATCCTACAGTTTATCTTAAGAAAAAAAAAAAGGTTTGAAAAAAACACTTTAA
1681 TTTAGGCTTCGTTGGTTGATGGTGGAAAAAAATGCTCAGGAAATATTTCAGATATTTGCCAAAAAACCAGTAATAAGGTT
1761 ACCTTATTAAAATAGTGATATTTGCTTTACTATTTAAGGTGTCACTGATAAATTAATTTGTACTTCTGTGTTTAGAAATT
1841 ATAGCTTCTTTTCCCTTAGTCAAATTTTTTAGCATATTATACACATTTCTGTGTAATCTGTGGAAGTGCAATAATATGTT
1921 AGTAAGTTACATTTTAAATAATGCTCATGTGACAATACTCCCAATCAATGGCTTATAGAATTTAAAGATCTGTATATTAG
2001 ATTTTGGCTTAAAGGCATGAGAAGTATAAGACTTGGTTTGGTGGCTTTGTAAGACCACCAGCCTCTTAATGATGGTTAGC
2081 TTCTTTAGGTCATTAAATCAATAAAAACATATAATGCTGTTTTGCTCTTCTAATGCTCCTCTTCCATTTCCAGTTATCTT
2161 CACATTTACATTTAAATATACAAACCTGAGCCTGCCATTATTAATTTCCCTATAAAATGACGATACATGTGAACATTTAT
2241 AAATGGACTAATACTGCTTGTCTTTCCCCCACCGCACAAAACTGGTTCTTAAGATGCCAGCAATGAATTTGAGACTATCT
2321 TTATTTATAAATGGAAACCGGAAACTTTTATACCAAACTATAATAATGTGCAGCACTGTAGGGCTTTTTTTTTTTTCCCT
2401 CCAAATACAGTGAAATTTTTTTATTCACAAGAGCTGCCACATCTCAGCATTTAGTAATAGAGCTGCTTTAATAAAATTCT
2481 AGTTTGATTGTCATGTCAAAAAAAGAAAAATGTTGCATCTTTGTGATTTTAAAACATAAATTAATGAAGGCTCTGATAGG
2561 CTATTAGGAGTTGGCTTGGAAACAGTTTTTGGTCTCACAGGTTACCATTGTTTGGGGATGTCTGAGCTGTTTTCAGATCT
2641 AGGAATAGCACAGTGTTGTCTTGTCTTTGGCAGTCTCATTTGGCTCTGTTTCTTGCACCACCAGCGTGTTCATTACCACT
2721 TAAATATATTGCTACAGCAGTGGAACAACAGAGTGGTGCAAGACACTGTAGATTAACGGTAGAGGAGAAATTGTGCCCTT
2801 AGTGTTAACAATGTGCCTTTTGTTCTGAATGCCATGTTGTAGGGCATGCATTTTTTGGCCTCTTTAACTCTTCGAATTCT
2881 AGTCAGTAAGAATGGAACCCATCTCTGCAAAGATACATCTGTCTTAAATATCTAGTTACAGGCCTTAATAGAAACCATAA
2961 GGCATGACTCATCTTCAGGCACTGAAAAAAGATAACCATCAGGTAGTGTTACACAAGGACTTCCTATATTTAAGGGGTTA
3041 AAGATGGTCTTTGTTGTATCTTAACATCAGACTGATTTTTACATTTTTTTTTTGTTATGCTAACACTAGACAAAAATCAA
3121 CTGTATTTGTAAAAATTTACCTCAAACCATTTAATTTTATAGTGTGATTAATCCCAGGGCATTTGGTATGAACCAAAGTG
3201 CATTCCTTTTATATGTGCCTGGCTCTAGTAAGGATGGCCAGGGATTTTTACAATTTGGGTGCAAGGCACTTAAGCCACTT
3281 TTAAACTTAATGGGTGGTTTGGGGTCGTGTTAAATGACTCCATCAGAATGTTAGAAAACACTTTAGGCATCAGTAGCATT
3361 GGGCCATATTGGAATCCTAAAGTGTGAATTATTTTAAGGAGAGCATTCATTTTTGTAATTTTTTTCATCAAAAATATTTC
3441 TGGTAAGCAGAAGACTTTTTAAAAAAACTGATCTGGTCTCGGTAAAGGTTTTAATATTGCCCAACATAATGCTGTAATAG
3521 CATTAAAAAAAGTATTTGTGAACTCTGTTTCTTAGGGGCTTGTACATCTCTCTGCTATGGACATACATAAAATTAATTGT
3601 AATTATACTCAGCTCAACTGCTACAGTTCTGTCTAGGCAGTGGCTTGGGTTTTTATCGAGCAACAACTTAGACACGTGAC
3681 TGTAATATGCTGCAACTGTGTGTACTGAAAATATGTGAAAATGGTTGAATGTGGACTGTGTATATATGTATGTAAAAATT
3761 TCTGTGAGATGCTGCTGTCGCCACTTAACATTAAATATGTTCTAGTGGATTTTAATCCTAGTGGCCAGTTCTATGATACT
3841 GTATGTATTATACAGCTGATGACAGGAGTAAGACTGTTTAGTGAATATCTGTTAAATTTTATTGTTGTGGCCAGAGATAA
3921 TTTCAGAATAAAATTTTAATGTCCTACCTTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcuuAGGUGGUGC-UUGUUGAAg 5'
              |::|:|: | |||||||| 
Target 5' ggttTTTATCGAGCAACAACTTa 3'
 3648 - 3670 158.00 -12.90
2 
miRNA  3' gcUUAGGUGGUGCUUGUUGAAg 5'
            |||::||| | ||| |:|| 
Target 5' aaAATTTACCTCAAACCATTTa 3'
 3132 - 3153 128.00 -9.50
3 
miRNA  3' gcUUAGGUGGUGCUUGUUGAAg 5'
            || ||: ||  |:||:||| 
Target 5' aaAAGCCGGCA-AAGCAGCTTt 3'
 614 - 634 127.00 -14.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26974378 8 COSMIC
COSN31587224 9 COSMIC
COSN30179805 24 COSMIC
COSN30170057 37 COSMIC
COSN31529941 38 COSMIC
COSN31525685 86 COSMIC
COSN30157048 109 COSMIC
COSN30135232 112 COSMIC
COSN24618370 138 COSMIC
COSN31539890 237 COSMIC
COSN26677167 299 COSMIC
COSN1582136 308 COSMIC
COSN30114629 409 COSMIC
COSN30177250 485 COSMIC
COSN15623883 575 COSMIC
COSN26957902 613 COSMIC
COSN30129632 624 COSMIC
COSN31584725 675 COSMIC
COSN31541273 691 COSMIC
COSN30113014 827 COSMIC
COSN31550085 895 COSMIC
COSN30114139 918 COSMIC
COSN17517349 934 COSMIC
COSN30532956 968 COSMIC
COSN30112402 1041 COSMIC
COSN15623884 1066 COSMIC
COSN31543200 1148 COSMIC
COSN30112016 1203 COSMIC
COSN30534507 1250 COSMIC
COSN30112037 1255 COSMIC
COSN31576798 1310 COSMIC
COSN26957903 1326 COSMIC
COSN26957904 1327 COSMIC
COSN31547259 1339 COSMIC
COSN31533961 1393 COSMIC
COSN29929969 1422 COSMIC
COSN31516600 1465 COSMIC
COSN31532168 1480 COSMIC
COSN20312536 1496 COSMIC
COSN26957905 1570 COSMIC
COSN26957906 1571 COSMIC
COSN31541270 1579 COSMIC
COSN9754277 1590 COSMIC
COSN30176532 1642 COSMIC
COSN30133340 1646 COSMIC
COSN29086896 1660 COSMIC
COSN23012397 1673 COSMIC
COSN31518720 1692 COSMIC
COSN30143848 1713 COSMIC
COSN30532906 1735 COSMIC
COSN30118634 1747 COSMIC
COSN31534391 1854 COSMIC
COSN30173969 1890 COSMIC
COSN26710396 1947 COSMIC
COSN30533144 2117 COSMIC
COSN31589733 2195 COSMIC
COSN30120143 2234 COSMIC
COSN30113409 2280 COSMIC
COSN30133141 2301 COSMIC
COSN8586572 2318 COSMIC
COSN31578554 2341 COSMIC
COSN30128232 2387 COSMIC
COSN19659114 2397 COSMIC
COSN27461842 2397 COSMIC
COSN30139451 2397 COSMIC
COSN15623885 2398 COSMIC
COSN9473898 2467 COSMIC
COSN30127844 2505 COSMIC
COSN31479865 2618 COSMIC
COSN31577572 2649 COSMIC
COSN30121742 2712 COSMIC
COSN31547266 2724 COSMIC
COSN24849664 2727 COSMIC
COSN26586651 2757 COSMIC
COSN31579674 2781 COSMIC
COSN30120731 2792 COSMIC
COSN31572435 2831 COSMIC
COSN31561932 2833 COSMIC
COSN30120557 2874 COSMIC
COSN23409361 2960 COSMIC
COSN31488507 3050 COSMIC
COSN30136353 3086 COSMIC
COSN25514223 3098 COSMIC
COSN15623886 3245 COSMIC
COSN30512549 3290 COSMIC
COSN31590185 3340 COSMIC
COSN15627652 3361 COSMIC
COSN28966561 3414 COSMIC
COSN31484094 3462 COSMIC
COSN30128023 3468 COSMIC
COSN29786482 3547 COSMIC
COSN31546839 3549 COSMIC
COSN7618556 3565 COSMIC
COSN26548547 3703 COSMIC
COSN31541919 3781 COSMIC
COSN30129169 3899 COSMIC
COSN30142818 3900 COSMIC
COSN15264414 4004 COSMIC
COSN16077538 4991 COSMIC
COSN17511021 5531 COSMIC
COSN1582138 6153 COSMIC
COSN22405257 6359 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759178764 1 dbSNP
rs1199501842 3 dbSNP
rs777922597 7 dbSNP
rs557417303 8 dbSNP
rs368545205 10 dbSNP
rs746447064 12 dbSNP
rs202181002 13 dbSNP
rs775950698 14 dbSNP
rs761070005 19 dbSNP
rs769580168 22 dbSNP
rs772929446 24 dbSNP
rs772092011 26 dbSNP
rs762690292 32 dbSNP
rs1331763915 33 dbSNP
rs1266015357 35 dbSNP
rs765971690 35 dbSNP
rs376929227 37 dbSNP
rs759557043 38 dbSNP
rs767318357 40 dbSNP
rs542814338 41 dbSNP
rs1258957585 45 dbSNP
rs755847013 46 dbSNP
rs777979669 48 dbSNP
rs772319729 49 dbSNP
rs757410743 50 dbSNP
rs954629958 57 dbSNP
rs1294670981 75 dbSNP
rs767184882 94 dbSNP
rs1448639918 98 dbSNP
rs771055955 101 dbSNP
rs1170024037 105 dbSNP
rs1031301103 107 dbSNP
rs140549083 111 dbSNP
rs1196108759 114 dbSNP
rs1234910280 116 dbSNP
rs1276589742 123 dbSNP
rs1342260106 126 dbSNP
rs1199446989 128 dbSNP
rs1276511778 151 dbSNP
rs573374574 155 dbSNP
rs540756357 159 dbSNP
rs1343163599 163 dbSNP
rs569140581 171 dbSNP
rs752197127 184 dbSNP
rs1231118759 185 dbSNP
rs1332975012 187 dbSNP
rs1302569360 188 dbSNP
rs1391327486 193 dbSNP
rs558913856 199 dbSNP
rs532835892 206 dbSNP
rs925707115 209 dbSNP
rs1310265614 211 dbSNP
rs989250453 213 dbSNP
rs12317297 216 dbSNP
rs1467124041 218 dbSNP
rs1377716262 224 dbSNP
rs1457638049 225 dbSNP
rs980470618 228 dbSNP
rs1471584935 234 dbSNP
rs755653847 238 dbSNP
rs914032245 239 dbSNP
rs949643776 243 dbSNP
rs546993706 273 dbSNP
rs1485244758 274 dbSNP
rs1279873949 277 dbSNP
rs559421504 279 dbSNP
rs1347133658 282 dbSNP
rs1256697608 285 dbSNP
rs747203503 288 dbSNP
rs905229492 291 dbSNP
rs938006602 292 dbSNP
rs1290799241 293 dbSNP
rs1420407460 304 dbSNP
rs1355292283 305 dbSNP
rs1467406576 306 dbSNP
rs530847692 307 dbSNP
rs1038222128 308 dbSNP
rs899262820 315 dbSNP
rs549168836 320 dbSNP
rs3741645 325 dbSNP
rs1455230210 326 dbSNP
rs1026156122 328 dbSNP
rs1159905413 338 dbSNP
rs753777047 340 dbSNP
rs535103840 345 dbSNP
rs1329287787 355 dbSNP
rs1444367732 360 dbSNP
rs1231807077 361 dbSNP
rs1208155536 366 dbSNP
rs547158894 368 dbSNP
rs1017519560 369 dbSNP
rs1463652954 374 dbSNP
rs940856655 377 dbSNP
rs1229566755 379 dbSNP
rs35797897 380 dbSNP
rs571613875 385 dbSNP
rs964756169 401 dbSNP
rs1246467735 403 dbSNP
rs757128866 405 dbSNP
rs978464485 407 dbSNP
rs1033068050 410 dbSNP
rs1257075586 412 dbSNP
rs1037903560 414 dbSNP
rs1317677917 415 dbSNP
rs955792424 416 dbSNP
rs1390276603 425 dbSNP
rs1321076359 428 dbSNP
rs1460885769 430 dbSNP
rs1411298651 434 dbSNP
rs899315076 442 dbSNP
rs538611309 447 dbSNP
rs914104448 448 dbSNP
rs1188235636 459 dbSNP
rs557335306 465 dbSNP
rs949550923 469 dbSNP
rs1209859020 474 dbSNP
rs1451554859 478 dbSNP
rs1450395525 483 dbSNP
rs982793429 487 dbSNP
rs926880256 492 dbSNP
rs770926300 493 dbSNP
rs151129263 494 dbSNP
rs141039166 517 dbSNP
rs1366655952 525 dbSNP
rs554721640 526 dbSNP
rs1439586522 531 dbSNP
rs1348019017 533 dbSNP
rs1168792867 552 dbSNP
rs528400776 554 dbSNP
rs1037728005 559 dbSNP
rs573141502 563 dbSNP
rs892349771 565 dbSNP
rs1168128233 566 dbSNP
rs1458171627 568 dbSNP
rs1164788536 571 dbSNP
rs1392043709 576 dbSNP
rs762014657 583 dbSNP
rs1189268730 585 dbSNP
rs899127290 589 dbSNP
rs1388438049 593 dbSNP
rs540723911 613 dbSNP
rs1010764302 621 dbSNP
rs1201717299 622 dbSNP
rs1318950658 628 dbSNP
rs778779054 638 dbSNP
rs1343830940 640 dbSNP
rs1274959654 648 dbSNP
rs1047836742 650 dbSNP
rs4913352 659 dbSNP
rs1335086364 660 dbSNP
rs765357838 662 dbSNP
rs1008713259 664 dbSNP
rs150233125 667 dbSNP
rs577676225 683 dbSNP
rs544641881 684 dbSNP
rs1431447904 686 dbSNP
rs900434559 688 dbSNP
rs1372605994 690 dbSNP
rs138903572 691 dbSNP
rs960403660 692 dbSNP
rs1032646510 695 dbSNP
rs1478660992 697 dbSNP
rs955697122 703 dbSNP
rs1180433286 707 dbSNP
rs1484280016 709 dbSNP
rs962314341 714 dbSNP
rs755207939 715 dbSNP
rs1489307000 719 dbSNP
rs1219692208 721 dbSNP
rs759458224 730 dbSNP
rs1023987730 731 dbSNP
rs970895897 737 dbSNP
rs1350941600 744 dbSNP
rs973650397 748 dbSNP
rs1357459197 751 dbSNP
rs530691400 751 dbSNP
rs1189302848 754 dbSNP
rs982317572 755 dbSNP
rs1178352425 758 dbSNP
rs926762924 761 dbSNP
rs1366478215 762 dbSNP
rs932106828 763 dbSNP
rs1457251537 773 dbSNP
rs1159176505 776 dbSNP
rs959653922 782 dbSNP
rs1417252513 787 dbSNP
rs1413170496 791 dbSNP
rs974031339 795 dbSNP
rs1482081902 797 dbSNP
rs1238899129 803 dbSNP
rs1210175169 811 dbSNP
rs911940934 816 dbSNP
rs920629293 817 dbSNP
rs944738423 820 dbSNP
rs1052893853 821 dbSNP
rs929290825 822 dbSNP
rs1227907907 830 dbSNP
rs1047867719 831 dbSNP
rs911966632 834 dbSNP
rs76953599 847 dbSNP
rs1310563500 849 dbSNP
rs1043616000 853 dbSNP
rs1319049707 861 dbSNP
rs1459309776 871 dbSNP
rs1356473313 872 dbSNP
rs568254671 894 dbSNP
rs1285430228 897 dbSNP
rs1164484844 900 dbSNP
rs769819811 903 dbSNP
rs1182146921 906 dbSNP
rs1483649136 906 dbSNP
rs561056863 915 dbSNP
rs1054296755 918 dbSNP
rs891484657 919 dbSNP
rs1423013698 928 dbSNP
rs773722741 931 dbSNP
rs1465309085 934 dbSNP
rs1009842531 941 dbSNP
rs1179037129 951 dbSNP
rs1023894417 954 dbSNP
rs528344019 955 dbSNP
rs1001654677 957 dbSNP
rs1157474361 961 dbSNP
rs1246992507 965 dbSNP
rs1015716771 967 dbSNP
rs1359209633 970 dbSNP
rs1295520407 975 dbSNP
rs1467196508 976 dbSNP
rs962365920 984 dbSNP
rs749730534 988 dbSNP
rs920807918 993 dbSNP
rs953544430 1002 dbSNP
rs1310488349 1003 dbSNP
rs536839683 1019 dbSNP
rs1428741847 1025 dbSNP
rs959799874 1037 dbSNP
rs1387734393 1039 dbSNP
rs1189913863 1045 dbSNP
rs1449617270 1046 dbSNP
rs986676497 1058 dbSNP
rs973721322 1063 dbSNP
rs944808971 1068 dbSNP
rs550309220 1069 dbSNP
rs1223438677 1076 dbSNP
rs531860943 1085 dbSNP
rs1341693291 1087 dbSNP
rs571611426 1087 dbSNP
rs1309225888 1091 dbSNP
rs913937683 1097 dbSNP
rs946685036 1099 dbSNP
rs1043624258 1101 dbSNP
rs774638003 1104 dbSNP
rs983464443 1105 dbSNP
rs1304156856 1106 dbSNP
rs905093237 1109 dbSNP
rs1002054721 1115 dbSNP
rs1170155086 1116 dbSNP
rs532654811 1117 dbSNP
rs550673923 1120 dbSNP
rs146965906 1125 dbSNP
rs1004406515 1128 dbSNP
rs1434859296 1129 dbSNP
rs1269576999 1134 dbSNP
rs762862002 1137 dbSNP
rs1481991538 1138 dbSNP
rs759922254 1139 dbSNP
rs995147777 1146 dbSNP
rs1255522118 1152 dbSNP
rs1231649744 1163 dbSNP
rs1314436314 1169 dbSNP
rs536533555 1173 dbSNP
rs1284530922 1187 dbSNP
rs767115679 1198 dbSNP
rs1177931321 1203 dbSNP
rs1262932413 1204 dbSNP
rs1391643866 1205 dbSNP
rs1400811095 1211 dbSNP
rs1054326454 1230 dbSNP
rs891725190 1232 dbSNP
rs1300541595 1233 dbSNP
rs1467167258 1235 dbSNP
rs1429896285 1237 dbSNP
rs1027922170 1238 dbSNP
rs1158417343 1238 dbSNP
rs1413914100 1240 dbSNP
rs137881827 1255 dbSNP
rs953639726 1260 dbSNP
rs1425861418 1261 dbSNP
rs945945621 1291 dbSNP
rs1255799733 1293 dbSNP
rs1198773044 1294 dbSNP
rs1340589433 1301 dbSNP
rs1484316392 1305 dbSNP
rs1045378625 1321 dbSNP
rs1228322512 1325 dbSNP
rs1019569802 1327 dbSNP
rs1434342972 1329 dbSNP
rs906830221 1330 dbSNP
rs1290619701 1333 dbSNP
rs775166918 1339 dbSNP
rs1240267741 1353 dbSNP
rs1173354995 1366 dbSNP
rs1001327793 1371 dbSNP
rs1465837672 1373 dbSNP
rs1333011613 1377 dbSNP
rs570192265 1380 dbSNP
rs1402872597 1384 dbSNP
rs1310218130 1386 dbSNP
rs869191653 1396 dbSNP
rs1034512120 1397 dbSNP
rs895341566 1403 dbSNP
rs764105091 1405 dbSNP
rs1027796359 1407 dbSNP
rs1368933130 1408 dbSNP
rs763636559 1413 dbSNP
rs950946438 1424 dbSNP
rs983669599 1425 dbSNP
rs1018979033 1426 dbSNP
rs869151098 1427 dbSNP
rs946735564 1427 dbSNP
rs1219452833 1434 dbSNP
rs566827501 1435 dbSNP
rs966437540 1450 dbSNP
rs1446451687 1459 dbSNP
rs534084937 1469 dbSNP
rs926611185 1474 dbSNP
rs974877217 1484 dbSNP
rs1208595806 1496 dbSNP
rs3087837 1503 dbSNP
rs1247150516 1513 dbSNP
rs1056378007 1515 dbSNP
rs1489443806 1527 dbSNP
rs577634463 1531 dbSNP
rs1246545910 1536 dbSNP
rs1382839346 1537 dbSNP
rs1296261204 1540 dbSNP
rs939833044 1549 dbSNP
rs1036801474 1560 dbSNP
rs898219949 1567 dbSNP
rs1477886339 1568 dbSNP
rs1404537124 1577 dbSNP
rs995243120 1579 dbSNP
rs1161639161 1580 dbSNP
rs1421095690 1580 dbSNP
rs1426810376 1583 dbSNP
rs1464337618 1592 dbSNP
rs1386146324 1600 dbSNP
rs189243920 1608 dbSNP
rs1447801622 1609 dbSNP
rs757326786 1610 dbSNP
rs989958620 1632 dbSNP
rs765202230 1642 dbSNP
rs1170193159 1645 dbSNP
rs1350932236 1646 dbSNP
rs889455196 1648 dbSNP
rs1008258657 1649 dbSNP
rs1019158964 1649 dbSNP
rs1224196463 1649 dbSNP
rs1359683480 1649 dbSNP
rs945977618 1652 dbSNP
rs1439241583 1660 dbSNP
rs1045617243 1674 dbSNP
rs142408660 1676 dbSNP
rs181134008 1676 dbSNP
rs1329086865 1679 dbSNP
rs966613749 1680 dbSNP
rs936985783 1684 dbSNP
rs1055578398 1691 dbSNP
rs1344926619 1692 dbSNP
rs898253030 1703 dbSNP
rs541451602 1706 dbSNP
rs552951124 1713 dbSNP
rs995231805 1716 dbSNP
rs1027832187 1718 dbSNP
rs988242293 1723 dbSNP
rs1421751447 1727 dbSNP
rs1168962846 1732 dbSNP
rs1478002475 1733 dbSNP
rs1245534596 1739 dbSNP
rs767374498 1748 dbSNP
rs1490635356 1755 dbSNP
rs1005176120 1759 dbSNP
rs968131487 1777 dbSNP
rs1308706224 1779 dbSNP
rs1273124834 1781 dbSNP
rs114166990 1791 dbSNP
rs572724826 1794 dbSNP
rs1454343888 1795 dbSNP
rs1285184102 1798 dbSNP
rs975159200 1800 dbSNP
rs926661809 1808 dbSNP
rs746867901 1809 dbSNP
rs867506094 1810 dbSNP
rs1028968441 1812 dbSNP
rs542941711 1814 dbSNP
rs561121790 1820 dbSNP
rs528407682 1821 dbSNP
rs913102789 1823 dbSNP
rs1329601422 1828 dbSNP
rs992487826 1841 dbSNP
rs1423684167 1843 dbSNP
rs540396108 1846 dbSNP
rs1480935484 1862 dbSNP
rs1411727851 1866 dbSNP
rs866252384 1870 dbSNP
rs1481397009 1872 dbSNP
rs1233139855 1874 dbSNP
rs1208807133 1877 dbSNP
rs750057769 1877 dbSNP
rs1204223059 1880 dbSNP
rs867336643 1880 dbSNP
rs1328181798 1884 dbSNP
rs1286255118 1898 dbSNP
rs945881829 1900 dbSNP
rs939864512 1910 dbSNP
rs1036896951 1912 dbSNP
rs1280428375 1915 dbSNP
rs898315063 1921 dbSNP
rs1404019537 1930 dbSNP
rs758174494 1932 dbSNP
rs781294732 1935 dbSNP
rs931091317 1938 dbSNP
rs1470601401 1945 dbSNP
rs1414945376 1946 dbSNP
rs1049496092 1947 dbSNP
rs1408243809 1948 dbSNP
rs1180933782 1954 dbSNP
rs889455877 1956 dbSNP
rs1244481670 1965 dbSNP
rs1163286214 1969 dbSNP
rs1007852436 1971 dbSNP
rs1464372998 1976 dbSNP
rs1266210606 1977 dbSNP
rs748313455 1979 dbSNP
rs1317358301 1984 dbSNP
rs928531001 1995 dbSNP
rs937245875 1997 dbSNP
rs1055886763 2002 dbSNP
rs1227967156 2015 dbSNP
rs1380610255 2016 dbSNP
rs1317222700 2019 dbSNP
rs1420316487 2020 dbSNP
rs1453522965 2030 dbSNP
rs752004195 2033 dbSNP
rs1300155160 2035 dbSNP
rs1365094517 2041 dbSNP
rs1358807979 2042 dbSNP
rs1430251860 2043 dbSNP
rs565110429 2046 dbSNP
rs1163580451 2050 dbSNP
rs1403271110 2070 dbSNP
rs1041044156 2073 dbSNP
rs1183639750 2084 dbSNP
rs902065079 2085 dbSNP
rs1246101786 2102 dbSNP
rs756192709 2108 dbSNP
rs1009761560 2109 dbSNP
rs1021101306 2109 dbSNP
rs1245945003 2112 dbSNP
rs1219167372 2113 dbSNP
rs755271105 2115 dbSNP
rs1294304979 2124 dbSNP
rs536146757 2128 dbSNP
rs1341557333 2129 dbSNP
rs931083405 2131 dbSNP
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rs1172863980 2133 dbSNP
rs1033731061 2136 dbSNP
rs532480608 2138 dbSNP
rs959655334 2139 dbSNP
rs1367050768 2140 dbSNP
rs1314218421 2141 dbSNP
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rs540696173 3020 dbSNP
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rs1415655562 4974 dbSNP
rs1182283222 4979 dbSNP
rs1198076108 4980 dbSNP
rs1262822673 4992 dbSNP
rs1191511009 5001 dbSNP
rs1271571950 5001 dbSNP
rs1243147764 5008 dbSNP
rs957505156 5009 dbSNP
rs759294552 5014 dbSNP
rs1044835002 5019 dbSNP
rs906054586 5023 dbSNP
rs1292459997 5024 dbSNP
rs1012073624 5026 dbSNP
rs1223320887 5028 dbSNP
rs1271263060 5031 dbSNP
rs1023001698 5057 dbSNP
rs1005712163 5058 dbSNP
rs970430629 5061 dbSNP
rs139514143 5068 dbSNP
rs79073115 5070 dbSNP
rs897402054 5071 dbSNP
rs994396324 5072 dbSNP
rs1168822331 5073 dbSNP
rs1420273438 5082 dbSNP
rs1030110639 5087 dbSNP
rs983315196 5089 dbSNP
rs879905538 5092 dbSNP
rs1166030869 5096 dbSNP
rs1214646383 5107 dbSNP
rs191818288 5110 dbSNP
rs766031559 5114 dbSNP
rs1220056089 5115 dbSNP
rs909025168 5121 dbSNP
rs941826143 5122 dbSNP
rs1405402952 5125 dbSNP
rs1217036548 5129 dbSNP
rs1369557211 5136 dbSNP
rs1304453941 5137 dbSNP
rs1363227026 5148 dbSNP
rs974889905 5152 dbSNP
rs1397883255 5155 dbSNP
rs764331236 5156 dbSNP
rs1006951306 5161 dbSNP
rs1018299828 5168 dbSNP
rs1403923840 5169 dbSNP
rs1298506552 5180 dbSNP
rs1175372169 5186 dbSNP
rs568015283 5192 dbSNP
rs535233737 5198 dbSNP
rs1397377154 5203 dbSNP
rs1194841109 5212 dbSNP
rs553568654 5212 dbSNP
rs1236708281 5215 dbSNP
rs1200980865 5216 dbSNP
rs1480751984 5242 dbSNP
rs1268863809 5278 dbSNP
rs1255054296 5282 dbSNP
rs556069276 5294 dbSNP
rs1207343056 5302 dbSNP
rs1304012110 5303 dbSNP
rs1313461873 5303 dbSNP
rs1239294304 5305 dbSNP
rs891349020 5306 dbSNP
rs1311183665 5307 dbSNP
rs398055662 5307 dbSNP
rs58402903 5307 dbSNP
rs1397411435 5310 dbSNP
rs201972766 5314 dbSNP
rs1246736380 5317 dbSNP
rs1294015171 5321 dbSNP
rs1226939826 5322 dbSNP
rs572477829 5323 dbSNP
rs540873722 5324 dbSNP
rs1377324886 5327 dbSNP
rs893287450 5332 dbSNP
rs992081200 5335 dbSNP
rs917613397 5339 dbSNP
rs1184342641 5345 dbSNP
rs754008200 5349 dbSNP
rs947729060 5352 dbSNP
rs757295545 5357 dbSNP
rs1372383660 5358 dbSNP
rs1445149358 5359 dbSNP
rs778982502 5366 dbSNP
rs1280386641 5367 dbSNP
rs750462031 5380 dbSNP
rs1215328608 5382 dbSNP
rs941720228 5394 dbSNP
rs1002847811 5395 dbSNP
rs1038555345 5400 dbSNP
rs983362894 5403 dbSNP
rs1394489830 5416 dbSNP
rs1423519917 5424 dbSNP
rs1357665935 5428 dbSNP
rs1158726346 5430 dbSNP
rs1016130547 5432 dbSNP
rs1386685563 5433 dbSNP
rs1359122763 5439 dbSNP
rs1160822727 5444 dbSNP
rs897313683 5446 dbSNP
rs930257586 5447 dbSNP
rs758998348 5450 dbSNP
rs974519768 5453 dbSNP
rs538475193 5455 dbSNP
rs891146979 5458 dbSNP
rs933000102 5465 dbSNP
rs987126776 5476 dbSNP
rs1263717374 5482 dbSNP
rs1326259282 5487 dbSNP
rs1355616619 5488 dbSNP
rs923589586 5491 dbSNP
rs780681623 5493 dbSNP
rs1337139750 5498 dbSNP
rs1453957572 5513 dbSNP
rs1275503208 5518 dbSNP
rs1317863223 5523 dbSNP
rs558116966 5527 dbSNP
rs115817859 5530 dbSNP
rs145195801 5531 dbSNP
rs1292139408 5540 dbSNP
rs1390713281 5540 dbSNP
rs947521195 5543 dbSNP
rs1418069195 5544 dbSNP
rs10784638 5545 dbSNP
rs1476660409 5552 dbSNP
rs529627686 5556 dbSNP
rs1193354132 5560 dbSNP
rs1450959725 5571 dbSNP
rs1265190934 5576 dbSNP
rs1002942701 5577 dbSNP
rs1035731096 5583 dbSNP
rs1273999583 5587 dbSNP
rs886429787 5599 dbSNP
rs1337749664 5603 dbSNP
rs111601548 5604 dbSNP
rs759581140 5608 dbSNP
rs1228327326 5610 dbSNP
rs541608530 5612 dbSNP
rs1004809569 5613 dbSNP
rs1322176609 5615 dbSNP
rs370517513 5621 dbSNP
rs1185336408 5622 dbSNP
rs1395636825 5633 dbSNP
rs1331157429 5640 dbSNP
rs1241217783 5645 dbSNP
rs963260157 5647 dbSNP
rs1167924620 5649 dbSNP
rs956564286 5652 dbSNP
rs992509050 5653 dbSNP
rs1365129023 5654 dbSNP
rs1024880049 5655 dbSNP
rs1454686158 5658 dbSNP
rs778574291 5664 dbSNP
rs1451143647 5665 dbSNP
rs1237313419 5671 dbSNP
rs559725161 5689 dbSNP
rs1157675431 5698 dbSNP
rs374463367 5702 dbSNP
rs1028812930 5704 dbSNP
rs1388356722 5705 dbSNP
rs954485212 5722 dbSNP
rs969265949 5724 dbSNP
rs1372436671 5727 dbSNP
rs1308987257 5736 dbSNP
rs149210783 5738 dbSNP
rs1329153658 5743 dbSNP
rs1337103325 5743 dbSNP
rs908844470 5750 dbSNP
rs1413367378 5759 dbSNP
rs1399392269 5763 dbSNP
rs941793077 5764 dbSNP
rs1175027266 5770 dbSNP
rs1435243677 5774 dbSNP
rs1379683979 5779 dbSNP
rs923617622 5783 dbSNP
rs1471054188 5785 dbSNP
rs369286859 5787 dbSNP
rs918772952 5788 dbSNP
rs989096823 5793 dbSNP
rs1381264511 5795 dbSNP
rs1451944615 5799 dbSNP
rs914781429 5801 dbSNP
rs947652008 5804 dbSNP
rs373252536 5817 dbSNP
rs79501902 5819 dbSNP
rs1222376104 5820 dbSNP
rs1044984404 5823 dbSNP
rs1280546170 5824 dbSNP
rs1446805150 5825 dbSNP
rs1307771481 5828 dbSNP
rs570422077 5834 dbSNP
rs927444852 5850 dbSNP
rs938780644 5852 dbSNP
rs1359752070 5855 dbSNP
rs11321954 5856 dbSNP
rs398019989 5856 dbSNP
rs200309637 5857 dbSNP
rs1408418702 5864 dbSNP
rs930145003 5867 dbSNP
rs1162497424 5872 dbSNP
rs1237151775 5874 dbSNP
rs1051669642 5885 dbSNP
rs553966253 5898 dbSNP
rs1255673605 5908 dbSNP
rs886441193 5911 dbSNP
rs1004861890 5919 dbSNP
rs546497194 5934 dbSNP
rs1037635996 5941 dbSNP
rs1323925046 5946 dbSNP
rs1205332391 5950 dbSNP
rs574027489 5961 dbSNP
rs1319303558 5962 dbSNP
rs899105271 5962 dbSNP
rs747772929 5963 dbSNP
rs769328071 5964 dbSNP
rs1339243360 5965 dbSNP
rs1000946321 5969 dbSNP
rs753213877 5971 dbSNP
rs531160330 5975 dbSNP
rs1322568597 5980 dbSNP
rs762347373 5985 dbSNP
rs892325095 5992 dbSNP
rs143401058 5996 dbSNP
rs956387820 5997 dbSNP
rs1422982240 6007 dbSNP
rs989581059 6010 dbSNP
rs1487132435 6013 dbSNP
rs914895969 6018 dbSNP
rs1221217994 6024 dbSNP
rs1467430844 6025 dbSNP
rs969417262 6026 dbSNP
rs1025188355 6034 dbSNP
rs1213910048 6041 dbSNP
rs980369893 6043 dbSNP
rs1292823347 6049 dbSNP
rs1215819958 6053 dbSNP
rs1362501188 6056 dbSNP
rs969300195 6056 dbSNP
rs927451208 6060 dbSNP
rs980674729 6067 dbSNP
rs1429570530 6068 dbSNP
rs1015974114 6071 dbSNP
rs1057253708 6072 dbSNP
rs1462150292 6075 dbSNP
rs963020777 6086 dbSNP
rs972253032 6091 dbSNP
rs1179060171 6092 dbSNP
rs1168326064 6095 dbSNP
rs919025940 6104 dbSNP
rs1430392518 6109 dbSNP
rs907929447 6116 dbSNP
rs940772065 6117 dbSNP
rs1038130436 6118 dbSNP
rs1255275398 6122 dbSNP
rs567982337 6130 dbSNP
rs1465953871 6131 dbSNP
rs1456991897 6139 dbSNP
rs1249275268 6146 dbSNP
rs1205951127 6148 dbSNP
rs933040468 6154 dbSNP
rs986990738 6156 dbSNP
rs1050323840 6183 dbSNP
rs890307098 6188 dbSNP
rs1373176294 6195 dbSNP
rs1303870886 6197 dbSNP
rs912697020 6199 dbSNP
rs535384041 6203 dbSNP
rs184249615 6204 dbSNP
rs1030780632 6207 dbSNP
rs1296689196 6207 dbSNP
rs1355168943 6207 dbSNP
rs1398713693 6207 dbSNP
rs1389763528 6208 dbSNP
rs1287895832 6210 dbSNP
rs1397439496 6228 dbSNP
rs542636292 6229 dbSNP
rs1418886335 6251 dbSNP
rs1039930627 6252 dbSNP
rs1178546733 6258 dbSNP
rs1225063610 6260 dbSNP
rs1022415037 6261 dbSNP
rs969045706 6264 dbSNP
rs1208187245 6274 dbSNP
rs1481087174 6287 dbSNP
rs1349881017 6289 dbSNP
rs980762634 6290 dbSNP
rs774231137 6292 dbSNP
rs925313675 6295 dbSNP
rs1034574269 6303 dbSNP
rs1308947760 6306 dbSNP
rs1393350170 6309 dbSNP
rs1374421110 6311 dbSNP
rs1312283825 6318 dbSNP
rs1205129001 6338 dbSNP
rs1253064365 6339 dbSNP
rs547169648 6345 dbSNP
rs936674039 6351 dbSNP
rs1052837931 6352 dbSNP
rs867783806 6360 dbSNP
rs1453726743 6361 dbSNP
rs565773589 6364 dbSNP
rs908023653 6369 dbSNP
rs1161804004 6372 dbSNP
rs1419298027 6382 dbSNP
rs1269094615 6383 dbSNP
rs1014051086 6395 dbSNP
rs1185075981 6400 dbSNP
rs1196891591 6403 dbSNP
rs940810055 6403 dbSNP
rs973505415 6417 dbSNP
rs1433030501 6420 dbSNP
rs1484887940 6421 dbSNP
rs1171669636 6437 dbSNP
rs920594495 6455 dbSNP
rs1046259375 6469 dbSNP
rs1317687051 6470 dbSNP
rs931978205 6477 dbSNP
rs1231489686 6478 dbSNP
rs1357414124 6482 dbSNP
rs1375293448 6493 dbSNP
rs1313613892 6494 dbSNP
rs905021808 6495 dbSNP
rs1383515265 6499 dbSNP
rs1290931869 6504 dbSNP
rs890402350 6506 dbSNP
rs1416643108 6507 dbSNP
rs944609975 6512 dbSNP
rs1002142543 6518 dbSNP
rs1016175399 6524 dbSNP
rs1052262064 6527 dbSNP
rs1417921355 6531 dbSNP
rs1406956662 6537 dbSNP
rs759349398 6541 dbSNP
rs1426600614 6549 dbSNP
rs1263786963 6551 dbSNP
rs1205453321 6552 dbSNP
rs1301593694 6553 dbSNP
rs539912530 6555 dbSNP
rs375134831 6556 dbSNP
rs963261395 6570 dbSNP
rs1271083050 6572 dbSNP
rs151296067 6578 dbSNP
rs1337295338 6583 dbSNP
rs141778654 6589 dbSNP
rs1297551017 6592 dbSNP
rs1325139765 6595 dbSNP
rs1298398429 6599 dbSNP
rs115415751 6608 dbSNP
rs776841340 6615 dbSNP
rs1001846954 6620 dbSNP
rs987619735 6621 dbSNP
rs1034669983 6623 dbSNP
rs1394772859 6634 dbSNP
rs1227636566 6635 dbSNP
rs762159897 6641 dbSNP
rs1374685061 6647 dbSNP
rs1291831372 6648 dbSNP
rs79029355 6651 dbSNP
rs1453775615 6655 dbSNP
rs187443153 6656 dbSNP
rs1195339063 6657 dbSNP
rs925553495 6669 dbSNP
rs750560663 6671 dbSNP
rs117696618 6677 dbSNP
rs973915272 6679 dbSNP
rs1337562459 6681 dbSNP
rs1187507253 6683 dbSNP
rs1253184453 6684 dbSNP
rs1052453070 6685 dbSNP
rs920662651 6690 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Disease 8445.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcuuagguggugcUUGUUGAAg 5'
                       |||||||| 
Target 5' ------------cAACAACUUa 3'
 		1 - 10
2 
miRNA  3' gcUUAGGUGGUGC-UUGUUGAag 5'
            | | :| :|:|  :|||||  
Target 5' ugACUGUAAUAUGCUGCAACUg- 3'
 		17 - 38
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 8445.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000344096.3 | 3UTR | CAACAACUUAGACACGUGACUGUAAUAUGCUGCAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000344096.3 | 3UTR | CAACAACUUAGACACGUGACUGUAAUAUGCUGCAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.828 5.4e-7 0.608 1.0e-3 23 Click to see details
GSE19350 CNS germ cell tumors -0.75 2.5e-3 -0.713 4.6e-3 12 Click to see details
GSE19783 ER- ER- breast cancer -0.25 1.3e-2 -0.139 1.1e-1 79 Click to see details
GSE21687 Ependynoma primary tumors -0.265 1.7e-2 -0.453 8.5e-5 64 Click to see details
GSE38226 Liver fibrosis 0.345 6.3e-2 0.170 2.3e-1 21 Click to see details
GSE32688 Pancreatic cancer -0.276 6.3e-2 -0.280 6.0e-2 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.31 7.0e-2 0.318 6.5e-2 24 Click to see details
GSE19783 ER+ ER+ breast cancer 0.324 8.2e-2 0.329 7.8e-2 20 Click to see details
GSE21849 B cell lymphoma -0.225 1.2e-1 -0.229 1.2e-1 29 Click to see details
GSE28260 Renal cortex and medulla -0.335 1.3e-1 -0.093 3.8e-1 13 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.255 1.4e-1 0.137 2.8e-1 20 Click to see details
GSE28544 Breast cancer -0.196 1.8e-1 -0.174 2.1e-1 24 Click to see details
GSE17306 Multiple myeloma 0.104 2.4e-1 0.149 1.5e-1 49 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.142 2.5e-1 0.026 4.5e-1 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.129 2.7e-1 -0.113 3.0e-1 25 Click to see details
GSE27834 Pluripotent stem cells -0.114 3.4e-1 -0.124 3.2e-1 16 Click to see details
GSE21032 Prostate cancer 0.043 3.5e-1 0.078 2.4e-1 83 Click to see details
GSE17498 Multiple myeloma -0.042 4.0e-1 -0.112 2.5e-1 40 Click to see details
GSE14794 Lymphoblastoid cells -0.018 4.3e-1 0.047 3.3e-1 90 Click to see details
GSE19536 Breast cancer -0.013 4.5e-1 0.051 3.1e-1 100 Click to see details
GSE19536 Breast cancer -0.013 4.5e-1 0.051 3.1e-1 100 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC -0.607 0 -0.616 0 19 Click to see details
THCA 0.263 0.03 0.285 0.02 55 Click to see details
COAD -0.692 0.03 -0.571 0.07 8 Click to see details
KIRC 0.208 0.05 0.181 0.08 62 Click to see details
BRCA 0.151 0.09 0.224 0.02 84 Click to see details
KIRP 0.241 0.09 0.333 0.03 32 Click to see details
PRAD 0.191 0.09 0.305 0.02 50 Click to see details
KICH 0.28 0.09 0.253 0.12 24 Click to see details
CESC -0.87 0.16 -0.500 0.33 3 Click to see details
LUAD 0.298 0.17 0.406 0.1 12 Click to see details
PCPG -0.843 0.18 -1.000 0.5 3 Click to see details
HNSC 0.135 0.2 0.206 0.1 42 Click to see details
LUSC 0.121 0.23 0.033 0.42 38 Click to see details
BLCA 0.129 0.3 0.075 0.38 18 Click to see details
PAAD -0.301 0.35 0.400 0.3 4 Click to see details
LIHC 0.053 0.36 0.062 0.34 49 Click to see details
STAD 0.059 0.37 -0.010 0.48 32 Click to see details
CHOL 0.07 0.43 -0.267 0.24 9 Click to see details
ESCA 0.013 0.48 0.027 0.47 11 Click to see details
ESCA 0.013 0.48 0.027 0.47 11 Click to see details
ESCA 0.013 0.48 0.027 0.47 11 Click to see details
112 hsa-miR-382-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT053778 PTEN phosphatase and tensin homolog 4 1
MIRT060847 XPR1 xenotropic and polytropic retrovirus receptor 1 1 1
MIRT064748 CCND2 cyclin D2 2 6
MIRT066666 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT077432 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT082804 ZNF264 zinc finger protein 264 2 4
MIRT089341 PCBP1 poly(rC) binding protein 1 2 6
MIRT176641 SMC3 structural maintenance of chromosomes 3 2 2
MIRT223217 ZKSCAN5 zinc finger with KRAB and SCAN domains 5 2 2
MIRT229780 GNL3L G protein nucleolar 3 like 2 2
MIRT244332 ARL4A ADP ribosylation factor like GTPase 4A 1 1
MIRT326971 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT369626 APCDD1 APC down-regulated 1 2 2
MIRT407707 MXD1 MAX dimerization protein 1 2 1
MIRT437905 NFIA nuclear factor I A 2 1
MIRT438103 DRD1 dopamine receptor D1 1 1
MIRT439190 ZNF652 zinc finger protein 652 1 1
MIRT439248 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT439276 XPO1 exportin 1 1 1
MIRT439382 TSPYL1 TSPY like 1 1 1
MIRT439494 SYT13 synaptotagmin 13 1 1
MIRT439497 SYNJ2 synaptojanin 2 1 1
MIRT439516 STT3A STT3A, catalytic subunit of the oligosaccharyltransferase complex 1 1
MIRT439564 SOGA2 microtubule crosslinking factor 1 1 1
MIRT439677 SERGEF secretion regulating guanine nucleotide exchange factor 1 1
MIRT439709 SAR1B secretion associated Ras related GTPase 1B 1 1
MIRT439802 RBM39 RNA binding motif protein 39 1 1
MIRT439819 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 1 1
MIRT439894 PRNP prion protein 1 1
MIRT439921 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 1 1
MIRT439942 PNMA2 paraneoplastic Ma antigen 2 1 1
MIRT439999 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 1 1
MIRT440023 PCNXL2 pecanex homolog 2 1 1
MIRT440041 PARM1 prostate androgen-regulated mucin-like protein 1 1 1
MIRT440180 MTRNR2L8 MT-RNR2-like 8 1 1
MIRT440191 MTRNR2L2 MT-RNR2-like 2 1 1
MIRT440195 MTRNR2L1 MT-RNR2-like 1 1 1
MIRT440198 MTPN myotrophin 1 1
MIRT440303 LUZP6 leucine zipper protein 6 1 1
MIRT440365 KIF5C kinesin family member 5C 1 1
MIRT440376 KIAA2022 neurite extension and migration factor 1 1
MIRT440514 HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 1 1
MIRT440626 FNIP1 folliculin interacting protein 1 1 1
MIRT440679 FAM199X family with sequence similarity 199, X-linked 1 1
MIRT440762 DYNC1H1 dynein cytoplasmic 1 heavy chain 1 1 1
MIRT440814 DICER1 dicer 1, ribonuclease III 1 1
MIRT440839 DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit 1 1
MIRT440851 DAD1 defender against cell death 1 1 1
MIRT440909 COPS4 COP9 signalosome subunit 4 1 1
MIRT440931 CLTC clathrin heavy chain 1 1
MIRT441003 CASP3 caspase 3 1 1
MIRT441121 BBS4 Bardet-Biedl syndrome 4 1 1
MIRT441181 ARMCX3 armadillo repeat containing, X-linked 3 1 1
MIRT441259 ADM adrenomedullin 1 1
MIRT441796 EXOSC2 exosome component 2 2 2
MIRT443001 SLC3A1 solute carrier family 3 member 1 2 2
MIRT445896 FAM46A family with sequence similarity 46 member A 2 2
MIRT445930 UFL1 UFM1 specific ligase 1 2 2
MIRT447479 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT450664 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT454105 TMEM209 transmembrane protein 209 2 2
MIRT459477 HIST1H3G histone cluster 1 H3 family member g 2 2
MIRT464867 UBB ubiquitin B 2 8
MIRT466300 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT470024 PTP4A2 protein tyrosine phosphatase type IVA, member 2 2 2
MIRT472335 NETO2 neuropilin and tolloid like 2 2 4
MIRT472973 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT478514 CTTN cortactin 2 6
MIRT501170 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501800 NHLRC3 NHL repeat containing 3 2 6
MIRT504301 ZNF318 zinc finger protein 318 2 6
MIRT507913 CALM1 calmodulin 1 2 4
MIRT511139 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT512231 ATXN3 ataxin 3 2 6
MIRT514375 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT516686 ZNF860 zinc finger protein 860 2 4
MIRT523197 HIST1H3F histone cluster 1 H3 family member f 2 2
MIRT529767 SF3B1 splicing factor 3b subunit 1 2 2
MIRT533901 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT534934 PTGDR prostaglandin D2 receptor 2 2
MIRT535125 PLSCR4 phospholipid scramblase 4 2 2
MIRT536454 KLHL3 kelch like family member 3 2 2
MIRT537076 GPR176 G protein-coupled receptor 176 2 2
MIRT537336 FRAXA fragile site, folic acid type, rare, fra(X)(q27.3) A (macroorchidism, mental retardation) 2 2
MIRT537513 FAM105A family with sequence similarity 105 member A 2 2
MIRT544499 SLC25A46 solute carrier family 25 member 46 2 2
MIRT546072 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT546537 NHS NHS actin remodeling regulator 2 4
MIRT552796 YAF2 YY1 associated factor 2 2 2
MIRT559300 ATXN1 ataxin 1 2 2
MIRT559851 GSKIP GSK3B interacting protein 2 2
MIRT563341 RPLP0 ribosomal protein lateral stalk subunit P0 2 2
MIRT563969 RAB6A RAB6A, member RAS oncogene family 2 2
MIRT564767 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT565057 VAMP3 vesicle associated membrane protein 3 2 2
MIRT565585 SLC6A8 solute carrier family 6 member 8 2 2
MIRT574166 ATG10 autophagy related 10 2 2
MIRT612545 RPAP2 RNA polymerase II associated protein 2 2 4
MIRT613882 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT617251 SPIC Spi-C transcription factor 2 2
MIRT620608 SAP30 Sin3A associated protein 30 2 2
MIRT620665 MRPS18C mitochondrial ribosomal protein S18C 2 2
MIRT630854 KLHDC10 kelch domain containing 10 2 2
MIRT661986 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT686138 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT698032 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT700741 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT716928 G3BP2 G3BP stress granule assembly factor 2 2 2
MIRT731079 YBX1 Y-box binding protein 1 3 1
MIRT733642 TOP1 DNA topoisomerase I 2 0
MIRT734728 NR3C1 nuclear receptor subfamily 3 group C member 1 3 0
MIRT756465 NR1H4 nuclear receptor subfamily 1 group H member 4 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-382 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-382 Morphine approved 5288826 Quantitative real-time PCR HIV 21224041 2011 down-regulated
miR-382 Budesonide approved 5281004 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-382 Phenethyl isothiocyanate(PEITC) NULL 16741 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-382 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-382 Propranolol approved 4946 Quantitative real-time PCR heart 22847192 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-382 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-382 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-382-5p (11r,15s,17s)-17-methyl-14,16-dioxatetracyclo[8.7.0.03,8.011,15]heptadeca-1(10),3,5,7-tetraene-2,9-dione 54611663 NSC722392 resistant
hsa-miR-382-5p (2E,5Z)-2-[(5-acetyl-4-methyl-1,3-thiazol-2-yl)hydrazinylidene]-5-[(2-methoxyphenyl)methylidene]-1,3-thiazolidin-4-one 135472679 NSC658292 sensitive
hsa-miR-382-5p (2R)-2-(1H-benzimidazol-2-yl)-2-(2-chloro-6-methylpyrimidin-4-yl)acetonitrile 390694 NSC688326 resistant
hsa-miR-382-5p (2S,6S,7S,12R)-16-bromo-9-tert-butyl-4-phenyl-4,20-diazapentacyclo[11.7.0.02,6.07,12.014,19]icosa-1(13),14(19),15,17-tetraene-3,5-dione 372657 NSC648154 sensitive
hsa-miR-382-5p (3-(trifluoromethyl)anilino)(2-(trifluoromethyl)phenyl)acetonitrile 375079 NSC654017 resistant
hsa-miR-382-5p (4-chlorophenyl)-[5-(2,4-dichloro-5-fluorophenyl)-5-hydroxy-3-(4-methoxyphenyl)-4h-pyrazol-1-yl]methanone 400818 NSC713324 resistant
hsa-miR-382-5p (4-chlorophenyl) 3-methyl-5-nitroimidazole-4-sulfonate 236063 NSC38086 resistant
hsa-miR-382-5p (4E)-2-(2-hydroxybenzoyl)-5-methyl-4-[(4-nitrophenyl)methylidene]pyrazol-3-one 5467414 NSC652175 sensitive
hsa-miR-382-5p (4e,12z,27z,43z)-hexatetraconta-4,12,27,43-tetraen-1,18,21,45-tetrayne-3,20-diol 5470605 NSC703544 resistant
hsa-miR-382-5p (5e)-5-[(3,4-dimethoxyphenyl)methylidene]-3-phenyl-2-propylimino-1,3-thiazolidin-4-one 5471348 NSC710598 sensitive
hsa-miR-382-5p (5s,8ar,9r)-5-[(3-fluorophenyl)methylamino]-9-(4-hydroxy-3,5-dimethoxyphenyl)-5a,6,8a,9-tetrahydro-5h-[2]benzofuro[6,5-f][1,3]benzodioxol-8-one 369915 NSC642282 sensitive
hsa-miR-382-5p (7E)-6-(methoxymethoxy)-2-methylcyclododec-7-en-3-yn-1-one 5467712 NSC658114 resistant
hsa-miR-382-5p (E)-3-(3-chlorophenyl)-N-[2-[(1,1-dioxothian-4-yl)-methylamino]-2-oxoethyl]prop-2-enamide 51003603 NSC761184 resistant
hsa-miR-382-5p (e)-phenyl(2-pyridinyl)methanone (6-chloro-4-pyrimidinyl)hydrazone 9571636 NSC693248 resistant
hsa-miR-382-5p (NE)-N-[(6E)-2-[(hydroxyamino)-(4-phenylmethoxyphenyl)methyl]-6-[(4-phenylmethoxyphenyl)methylidene]cyclohexylidene]hydroxylamine 5928828 NSC632824 resistant
hsa-miR-382-5p [(1h-benzimidazole-2-yl)dithio]-9h-purine 54613148 NSC750485 resistant
hsa-miR-382-5p [(3aR,8S)-8-acetyloxy-6-methyl-3,9-dimethylidene-2-oxo-4,6a,7,8,9a,9b-hexahydro-3aH-azuleno[4,5-b]furan-4-yl] 3-acetyloxy-2-hydroxy-2-methylbutanoate 380982 NSC666858 resistant
hsa-miR-382-5p [(4e)-4-[2-(3,3,6a,10b-tetramethyl-8-methylidene-1,4a,5,6,7,9,10,10a-octahydronaphtho[2,1-d][1,3]dioxin-7-yl)ethylidene]-5-oxooxolan-3-yl] acetate 25121273 NSC750035 resistant
hsa-miR-382-5p [(5R,6S)-4-cyclohexyl-6-(2,2-diphenylcyclopentyl)oxy-2-oxido-5,6-dihydro-4H-oxazin-2-ium-5-yl] acetate 395278 NSC699756 resistant
hsa-miR-382-5p [(8R,10S,13R)-7,12-diacetyloxy-17-[5,5-bis(4-chlorophenyl)pent-4-en-2-yl]-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-3-yl] acetate 376380 NSC657282 sensitive
hsa-miR-382-5p [(E)-1-chloropropylideneamino] N-[2-(trifluoromethoxy)phenyl]carbamate 5466266 NSC682836 resistant
hsa-miR-382-5p [(Z)-(1-chloro-2-methylpropylidene)amino] N-(4-bromophenyl)carbamate 9556248 NSC682825 resistant
hsa-miR-382-5p [1-[(e)-(5-nitrofuran-2-yl)methylideneamino]benzimidazol-2-yl]methanol 9572565 NSC720255 resistant
hsa-miR-382-5p [1-[[[2-amino-6-chloro-5-[(4-chlorophenyl)diazenyl]pyrimidin-4-yl]amino]methyl]-3-phenylmethoxycyclobutyl]methanol 385284 NSC676395 resistant
hsa-miR-382-5p [3,4,5-triacetyloxy-6-(3-cyano-6-phenyl-2-sulfanyl-4-thiophen-2-yl-4h-pyridin-1-yl)oxan-2-yl]methyl acetate 381303 NSC667740 sensitive
hsa-miR-382-5p [3,4,5-triacetyloxy-6-[(e)-2-(azidomethyl)-3-oxobut-1-enoxy]oxan-2-yl]methyl acetate 5471355 NSC710716 resistant
hsa-miR-382-5p [4-[(4-bromophenyl)carbamothioyl]phenyl] n-(4-chlorophenyl)carbamate 5471250 NSC710003 resistant
hsa-miR-382-5p [acetyl-[5-(trityloxymethyl)spiro[3a,5,6,6a-tetrahydrofuro[2,3-d][1,3]dioxole-2,1'-cyclopentane]-6-yl]amino] acetate 374290 NSC651809 sensitive
hsa-miR-382-5p 1-(2-methoxyphenyl)-3-[(z)-1-(2-pyridyl)ethylideneamino]thiourea 5367237 NSC668297 resistant
hsa-miR-382-5p 1-(9-methoxy-11,12-dihydro-6h-indolo[1,2-b][2]benzazepin-13-yl)ethanone 365697 NSC633551 sensitive
hsa-miR-382-5p 1-[(4-bromophenyl)amino]cyclopentanecarbonitrile 238637 NSC43101 resistant
hsa-miR-382-5p 1-[1-(3,4-dimethoxyphenyl)-5-ethyl-7,8-dimethoxy-4-methyl-2,3-benzodiazepin-3-yl]ethanone 343249 NSC382585 resistant
hsa-miR-382-5p 1-[5-[[[4-chlorobutyl(methyl)amino]-[(5-nitrofuran-2-yl)methoxy]phosphoryl]oxymethyl]-2,5-dihydrofuran-2-yl]-5-methylpyrimidine-2,4-dione 404846 NSC721390 sensitive
hsa-miR-382-5p 1-benzyl-2-methyl-1-(2-phenylethyl)-4,5-dihydroimidazol-1-ium 413544 NSC49460 sensitive
hsa-miR-382-5p 14,22-dioxa-6,30,36-triazahexacyclo[29.2.2.22,5.116,20.08,13.023,28]octatriaconta-1(34),2(38),3,5(37),6,8,10,12,16(36),17,19,23,25,27,29,31(35),32-heptadecaene 388224 NSC682817 sensitive
hsa-miR-382-5p 16-methoxy-4-(4-methoxyphenyl)-9-propan-2-yl-4,20-diazapentacyclo[11.7.0.02,6.07,12.014,19]icosa-1(13),14(19),15,17-tetraene-3,5-dione 390916 NSC689137 sensitive
hsa-miR-382-5p 17-acetyl-15-benzyl-9,14-dihydroxy-16-methyl-15-azatetracyclo[8.7.0.01,14.03,8]heptadeca-3,5,7,9,12,16-hexaene-2,11-dione 24203201 NSC727113 resistant
hsa-miR-382-5p 17-acetyl-9,14-dihydroxy-16-methyl-15-(4-methylphenyl)-15-azatetracyclo[8.7.0.01,14.03,8]heptadeca-3,5,7,9,12,16-hexaene-2,11-dione 405612 NSC722982 resistant
hsa-miR-382-5p 2'-(4-chlorobenzoyl)-1'-(4-chlorophenyl)-1'-hydroxyspiro[1,3-dihydro-1-benzazepine-4,4'-cyclohexane]-2,5-dione 388188 NSC682756 sensitive
hsa-miR-382-5p 2-(1-anilino-4-methyl-5-phenylimidazol-2-yl)sulfanyl-n-[4-(4-methoxyphenyl)-1,3-thiazol-2-yl]acetamide 60148160