miRTarBase - #MIRT066850


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pre-miRNA Information
pre-miRNA hsa-mir-3123   
Genomic Coordinates chr1: 241132272 - 241132346
Description Homo sapiens miR-3123 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3123
Sequence 49| CAGAGAAUUGUUUAAUC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 + 241132323 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1453759221 1 dbSNP
rs968575171 5 dbSNP
rs979407933 9 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM19   
Synonyms -
Description transmembrane protein 19
Transcript NM_018279   
Expression
Putative miRNA Targets on TMEM19
3'UTR of TMEM19
(miRNA target sites are highlighted)		 
>TMEM19|NM_018279|3'UTR
   1 ACTTTATTTCATTTCCACAGGTTGAAACTGGTGAGTCCAGCTAAATTTGCAATTCCAACTTTCATCCTAAGAATAATAAC
  81 TGTAATGGCAAAGCGGAAATGCCAGTTCCTCCTGTATTCCATTGAGATGGGATTTCACATTTTCCTCTCATCAACTCCCC
 161 TGTAATAGCTAGCGTCTTTCTAGTGAAAGAGAAGAATTCCTAGAACTTATGCATTTTTTTCCTGCTGAATGGAAGTCTTG
 241 AGCAATGAAGCTATATTGTCCCTACATATTACTATATATTGAACTGAAAGTTCTTACATAATCAATGTCAAGTTTTGTCT
 321 TATTTTGTTTTGTTTGTTTAAACCAGTGTAGGAAATAAAAGTGATGATATTTAAAATAGTTCTCAGTTGAAGCAGAGAAA
 401 TGCCACTGTGCTAGTTGCCCAAATGTTGTATCTATTTTAAATAGTTTAAGCTGATGTGTATGGGAGCCTAAACAAGTGTA
 481 GTATCCTGAACTTCTCCCATTAATTGCTATTCACAATTGGGAAAAGTGTGGAGATTGGTTCCTAGTGAGTTTTGTGGCCT
 561 ACTCCACATTTGTTCTTCCTTCCTCAGGGTTAGTGATGAAAAAAAGTAAATATCTTTTTCATATGTCCATTAGAATGTAT
 641 GAAAAAAATCATTTTAACTAAAAGCAAAAGAATTTTATCTTATATCTAAAAAATATATAACTTACTATATGTTTCAGTTG
 721 CTCTCTGAACAAAAATTATCTTCAATTTAATATGTGGAATGTGTTTTCTAGCTTTCTTTGAATTATGTATGGCAACCTGG
 801 TTTAGCACTGGCATCCTGAACAGTTAAGAGTCACTGGGAAATTATTGTATTTCTTTATAAATTTACTGTCATATCAATTG
 881 CTGGAAAATGCTATGATTTTTCTATTATTACCTTCTAAGTTGTATTCTCTCTTACACTGTAGCCTCAACTAAGGCAATTC
 961 TGCTATGTTTGTTCTTCACTATGATTTACTGTGTGCCAAAGGAGTTTTGACAGGGTACAGAGTATTTTACTAAAAGTATT
1041 TTTAAATGTTTCTCATGTGATTTCTGTACCTTCTTCCTCCTGCCCCTTTTGCTTTTTTAAAGAAACTGGGGAAGGATTTA
1121 TGAATACACCACCACCAGAGTGGATAATGCTTAGAATTCTTTATTGGTGGCCCTACTATGGTGATGATCTAGAACTGACT
1201 TACTTCAGGACAGAAGAAAAAACAATCACACCCTTAACCTTTAAGCCAGTTAGATCAGGGGGTTGCAACAATTGGGTTAA
1281 ACTTTGGGTATACATTGGAAGCACCAGGGCATGTTTGCTTTTTTTGTTTATGTGTTTGTTTTTTGAGACAGAGTCTCACA
1361 CTGTGGCCCAGGCTGGACTCCAGCACAGTGGCATGATCTCAGCTCCGCCTCCTGGGTTCACGTGATTCTCATGCCTCAGC
1441 CTCCCAAGTAGCTGGGATCACAGGCGTGCACCATCACGCCCGGCTAATTTTTGTATTTTCAGTAGAGACAGGGTTTCGCC
1521 ACGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCATCTCAGCCTCCCAAAGATCTATTACAAGATGT
1601 GAGCCACTGTGCCCAGCCACCAGGGCATGTTTTTAAAAAAGTACTGATGTCTGGGTTTCACACTGCAAAATTCTGATTTA
1681 TCTGATCTAAGGTACAGCCTGGATATTGAGACTTTTTAAAGCTCTGACTGTACATTGAATCATCATGTAAGGAGTTTTTA
1761 AAACATTGTTGCCAGGGCCCCTTTCTAGACCAAGTTAGTCAGAATGTTGGACAATGAGGCCCATGCATGGGTATTTTTAC
1841 AAAGCTCTCTGGGAGATTCTAATGCTTAACCAAATTGAGAAGCACTGAATAAGAATATCCTGGGCCGGGCGCACTGGCTC
1921 ATGCCTGTAATCCCAGCATTTTGGAAGGCCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAC
2001 ATGGTGAAACACCGTCTCTACTAAAAATACAAAAAATTAGGTGTGGTGGTGCGTGCCTGTATTCCCAGCCACTCAGGAGG
2081 CTGAGGCAGGAGAATCGCTGGAACCTGGGATGTGGAGGTTGCAGTGAGCCAAGATTGCACCACTGTACTCCAGCCTGGGC
2161 AACAGAGGGAGACTCCATCTAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATATTCT
2241 AAGCACTAGAACTACATAAGAATGTCCTAAAGCACTGTATCTAAGCACTTGAAAAGAATGGGACTTTTCGGTTTTAGGGA
2321 GATAACTATTAGCAACCACACAATATGTTATCTTTATGGATGAATAACTTCTGGTAATGACACAGTGTCTTACAGCTACA
2401 TCATTTATAAAATCATGTGTCAGTTTTCACACAGCCTGCACATCGTTCTGACATGCCCTTTTTTTCCCTGGAGATTTATC
2481 CTCATGACATACAAGGGGACAAAAATATTTATTGGGACTGTCTTTGAATTTAGTAGAATCACTGTATCATTAACAGTTTG
2561 GGGAAGTACTGCTTTGCAGTCCTTTATTTGAAAACTTAGGTCTAGCTGTGTTTTGCATCAAAATTTTTGAGCTATTCAAA
2641 AACTAATAGGATCTGTGTAAAATATTTCACTCAAAACTACTAAAAAAAAGTCTGGGATGGCAGCTCATTATCAAATATAC
2721 TCCTATTTTTGTGGTGATTTATGAACATCCCCACTAAGTATAACTAAAGATCATAAAGAGCCTCAGATCAAGTTTGGTCA
2801 GGTTTTGTCACCAAGCTTTGTAAATAAACTGGTTTTCATAGCTTTTTGGAGATGAGAATTGAGGATAAGAAATTGTGTCT
2881 CTGTCCTTTTTTTTTTTTTTTGTTAAGTCTTACATGTATTTTACTGTAACATCTTTTGAATTGGATATTTAACTAATTCA
2961 ACATATTTTTCCTCTTTGCAGAATGGGCAGTTCATGTTAAAATCACTTTTCATGGAAAGAGCTCTATGTAACAGCATAAT
3041 AAAACTGCCTACCTAGCAGCATAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuaAUUUG--UUAAGAGAc 5'
             |||::   ||||||| 
Target 5' ttcTAAGTTGTATTCTCTc 3'
 913 - 931 144.00 -5.40
2 
miRNA  3' cuAAUUUGUUAAGAGac 5'
            | |||:|:|||||  
Target 5' ttTAAAATAGTTCTCag 3'
 370 - 386 127.00 -9.50
3 
miRNA  3' cuAAUUUGUUAAGA-GAc 5'
            | |::||||||| || 
Target 5' acTAAGGCAATTCTGCTa 3'
 948 - 965 127.00 -8.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30525211 25 COSMIC
COSN20077630 56 COSMIC
COSN30505390 61 COSMIC
COSN20077728 65 COSMIC
COSN30191393 70 COSMIC
COSN30632189 95 COSMIC
COSN30180122 103 COSMIC
COSN30192542 116 COSMIC
COSN31510130 189 COSMIC
COSN31510110 190 COSMIC
COSN20958529 465 COSMIC
COSN22994916 566 COSMIC
COSN9475092 687 COSMIC
COSN21475260 758 COSMIC
COSN16059381 831 COSMIC
COSN22001396 1021 COSMIC
COSN27969699 1449 COSMIC
COSN31960816 1912 COSMIC
COSN22351905 2161 COSMIC
COSN8541130 2278 COSMIC
COSN23751417 2310 COSMIC
COSN30030416 2358 COSMIC
COSN28014422 2506 COSMIC
COSN15368650 2647 COSMIC
COSN20092605 2903 COSMIC
COSN5718887 2922 COSMIC
COSN25628672 3136 COSMIC
COSN8121407 3264 COSMIC
COSN17999764 3312 COSMIC
COSN22186606 3425 COSMIC
COSN9475093 3466 COSMIC
COSN29605583 3837 COSMIC
COSN21231683 3996 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1023785531 2 dbSNP
rs751750365 3 dbSNP
rs368170469 6 dbSNP
rs970240842 8 dbSNP
rs767906382 20 dbSNP
rs753660608 21 dbSNP
rs371628757 22 dbSNP
rs1393975726 25 dbSNP
rs1259307415 26 dbSNP
rs778870208 40 dbSNP
rs1186848239 43 dbSNP
rs1423884649 47 dbSNP
rs745814749 50 dbSNP
rs1165592970 53 dbSNP
rs1249734903 59 dbSNP
rs1185760234 62 dbSNP
rs1474239013 68 dbSNP
rs925625251 69 dbSNP
rs1419538372 78 dbSNP
rs934273042 83 dbSNP
rs1248753049 87 dbSNP
rs1197899930 95 dbSNP
rs113385533 96 dbSNP
rs922546046 106 dbSNP
rs1375786324 117 dbSNP
rs1469072683 122 dbSNP
rs182190176 128 dbSNP
rs889616985 129 dbSNP
rs941457514 133 dbSNP
rs1333601929 137 dbSNP
rs1463635919 147 dbSNP
rs1297043662 151 dbSNP
rs1391722307 155 dbSNP
rs187226809 159 dbSNP
rs938005134 162 dbSNP
rs992656063 167 dbSNP
rs1393707058 174 dbSNP
rs111619477 175 dbSNP
rs1469734902 181 dbSNP
rs1048897 185 dbSNP
rs1184289131 186 dbSNP
rs1438698535 194 dbSNP
rs1252774823 195 dbSNP
rs1047966233 203 dbSNP
rs1034977101 207 dbSNP
rs146918422 208 dbSNP
rs1285456532 209 dbSNP
rs1274407501 211 dbSNP
rs942290145 213 dbSNP
rs1347965445 214 dbSNP
rs1280882177 237 dbSNP
rs76792796 251 dbSNP
rs1198100498 252 dbSNP
rs377147118 254 dbSNP
rs1442906935 261 dbSNP
rs968218114 264 dbSNP
rs1317603597 267 dbSNP
rs978508081 268 dbSNP
rs1197525066 276 dbSNP
rs1265155479 279 dbSNP
rs1405914331 285 dbSNP
rs1032726013 290 dbSNP
rs955765780 297 dbSNP
rs996490091 299 dbSNP
rs1455887432 305 dbSNP
rs116675957 306 dbSNP
rs1215736213 310 dbSNP
rs1430982587 310 dbSNP
rs1444724263 312 dbSNP
rs570846614 318 dbSNP
rs922246767 320 dbSNP
rs1205277784 323 dbSNP
rs531614525 323 dbSNP
rs1346689067 331 dbSNP
rs757236001 342 dbSNP
rs1300863416 344 dbSNP
rs1236182661 346 dbSNP
rs537916251 360 dbSNP
rs1009251245 362 dbSNP
rs1428562287 362 dbSNP
rs985369210 365 dbSNP
rs1020775626 368 dbSNP
rs967881680 376 dbSNP
rs911064495 380 dbSNP
rs979778634 396 dbSNP
rs35212370 406 dbSNP
rs1436921601 408 dbSNP
rs1396088110 409 dbSNP
rs1033564358 415 dbSNP
rs1186377252 424 dbSNP
rs959644551 424 dbSNP
rs1474711363 433 dbSNP
rs781346648 435 dbSNP
rs750548934 442 dbSNP
rs572664836 455 dbSNP
rs917922078 457 dbSNP
rs929404228 459 dbSNP
rs139066456 464 dbSNP
rs983505308 481 dbSNP
rs1292346540 482 dbSNP
rs111912132 487 dbSNP
rs1405938019 491 dbSNP
rs1277696586 493 dbSNP
rs12321680 494 dbSNP
rs1039699789 500 dbSNP
rs1272028236 517 dbSNP
rs922239989 518 dbSNP
rs1214269997 519 dbSNP
rs930042729 528 dbSNP
rs1309387993 531 dbSNP
rs112061710 538 dbSNP
rs896456203 539 dbSNP
rs1012931120 557 dbSNP
rs1490147474 560 dbSNP
rs368286872 562 dbSNP
rs1045279201 566 dbSNP
rs1170177047 569 dbSNP
rs1050740582 579 dbSNP
rs960360384 583 dbSNP
rs904025674 593 dbSNP
rs34701154 599 dbSNP
rs890781061 600 dbSNP
rs1001065338 601 dbSNP
rs1009285814 606 dbSNP
rs752277522 609 dbSNP
rs1254788447 611 dbSNP
rs1031170895 614 dbSNP
rs1485791377 639 dbSNP
rs1202152481 642 dbSNP
rs955798843 642 dbSNP
rs1042099857 646 dbSNP
rs1009978227 648 dbSNP
rs1273573059 648 dbSNP
rs1232617757 652 dbSNP
rs1334163753 655 dbSNP
rs1291512264 658 dbSNP
rs1029758384 665 dbSNP
rs903689299 666 dbSNP
rs1000670958 671 dbSNP
rs1297863548 675 dbSNP
rs1419766958 676 dbSNP
rs1440416471 680 dbSNP
rs1429803263 684 dbSNP
rs1162048293 693 dbSNP
rs1033922931 695 dbSNP
rs1416424774 697 dbSNP
rs985783844 698 dbSNP
rs1166448531 706 dbSNP
rs1423936181 707 dbSNP
rs959358890 708 dbSNP
rs1406747260 722 dbSNP
rs1013491828 723 dbSNP
rs911107250 724 dbSNP
rs962940650 726 dbSNP
rs973917560 739 dbSNP
rs1233248485 741 dbSNP
rs918405729 741 dbSNP
rs1467077769 744 dbSNP
rs780483708 751 dbSNP
rs930073901 755 dbSNP
rs540427201 760 dbSNP
rs917911044 768 dbSNP
rs1024993197 774 dbSNP
rs948043724 783 dbSNP
rs1375891172 786 dbSNP
rs749651485 789 dbSNP
rs950670764 790 dbSNP
rs1392888719 794 dbSNP
rs1328564433 801 dbSNP
rs1364298160 815 dbSNP
rs1394366491 816 dbSNP
rs1344106916 820 dbSNP
rs535639880 821 dbSNP
rs909261779 827 dbSNP
rs769170860 830 dbSNP
rs1192755766 844 dbSNP
rs974975437 855 dbSNP
rs922074289 858 dbSNP
rs1210380833 863 dbSNP
rs1010010716 878 dbSNP
rs1260220208 894 dbSNP
rs554052607 897 dbSNP
rs1386830921 900 dbSNP
rs1029375200 904 dbSNP
rs933615334 905 dbSNP
rs190798715 909 dbSNP
rs912249837 911 dbSNP
rs1310325649 912 dbSNP
rs17110190 921 dbSNP
rs1369280101 930 dbSNP
rs1306200789 936 dbSNP
rs1214751502 945 dbSNP
rs1387867097 961 dbSNP
rs1042130363 966 dbSNP
rs973931959 971 dbSNP
rs1454942958 972 dbSNP
rs1025449798 989 dbSNP
rs1172664081 994 dbSNP
rs903636453 1012 dbSNP
rs1001020277 1019 dbSNP
rs1486609135 1025 dbSNP
rs1054991151 1031 dbSNP
rs894943119 1033 dbSNP
rs992657852 1034 dbSNP
rs1259644123 1037 dbSNP
rs1242057369 1048 dbSNP
rs1444677730 1052 dbSNP
rs1286958401 1058 dbSNP
rs748699471 1062 dbSNP
rs918040001 1069 dbSNP
rs1258130630 1075 dbSNP
rs948131088 1078 dbSNP
rs980818106 1087 dbSNP
rs1378952607 1088 dbSNP
rs925264354 1107 dbSNP
rs770276551 1121 dbSNP
rs1340624515 1125 dbSNP
rs143070994 1128 dbSNP
rs1160204779 1136 dbSNP
rs1376964723 1138 dbSNP
rs759023782 1143 dbSNP
rs950703346 1149 dbSNP
rs1347195297 1150 dbSNP
rs1371236574 1154 dbSNP
rs1172482964 1155 dbSNP
rs1004919140 1164 dbSNP
rs1264005166 1169 dbSNP
rs1016673716 1170 dbSNP
rs1336317927 1172 dbSNP
rs769414567 1179 dbSNP
rs1201360074 1180 dbSNP
rs975217965 1191 dbSNP
rs922138370 1192 dbSNP
rs1250076244 1195 dbSNP
rs1221021850 1197 dbSNP
rs1317911195 1202 dbSNP
rs954854634 1213 dbSNP
rs1454629740 1226 dbSNP
rs933442144 1230 dbSNP
rs1317110153 1240 dbSNP
rs1343256217 1241 dbSNP
rs987688636 1246 dbSNP
rs1390563373 1257 dbSNP
rs5799054 1257 dbSNP
rs749605301 1257 dbSNP
rs1299749347 1258 dbSNP
rs1466074308 1266 dbSNP
rs913454799 1273 dbSNP
rs879940924 1283 dbSNP
rs576004706 1284 dbSNP
rs1370381644 1288 dbSNP
rs148227722 1289 dbSNP
rs1223005348 1291 dbSNP
rs1200986749 1292 dbSNP
rs1017952257 1306 dbSNP
rs1211241929 1309 dbSNP
rs898142689 1322 dbSNP
rs1318497299 1323 dbSNP
rs977766577 1332 dbSNP
rs924923054 1334 dbSNP
rs936463357 1349 dbSNP
rs1055258573 1351 dbSNP
rs1237891747 1356 dbSNP
rs1333691859 1357 dbSNP
rs894980168 1364 dbSNP
rs1262093470 1372 dbSNP
rs1311166540 1373 dbSNP
rs775162510 1376 dbSNP
rs1393602056 1380 dbSNP
rs1323847437 1382 dbSNP
rs1459900479 1385 dbSNP
rs949166229 1386 dbSNP
rs1046255476 1387 dbSNP
rs1461395872 1401 dbSNP
rs886393783 1406 dbSNP
rs386764135 1407 dbSNP
rs951290638 1407 dbSNP
rs141945009 1408 dbSNP
rs150256517 1409 dbSNP
rs899131001 1417 dbSNP
rs969530343 1422 dbSNP
rs996295586 1423 dbSNP
rs763899430 1429 dbSNP
rs1410704329 1433 dbSNP
rs751396914 1434 dbSNP
rs1431773545 1450 dbSNP
rs1289967512 1455 dbSNP
rs1204100125 1458 dbSNP
rs954885494 1462 dbSNP
rs987635888 1466 dbSNP
rs2013933 1467 dbSNP
rs967627778 1468 dbSNP
rs1407052409 1478 dbSNP
rs374039229 1479 dbSNP
rs924989609 1482 dbSNP
rs527950782 1483 dbSNP
rs1400238920 1487 dbSNP
rs936619838 1496 dbSNP
rs1330189625 1503 dbSNP
rs988400372 1511 dbSNP
rs1420639622 1514 dbSNP
rs914191503 1518 dbSNP
rs552849486 1519 dbSNP
rs936294016 1523 dbSNP
rs142251569 1524 dbSNP
rs916350113 1528 dbSNP
rs1323715223 1541 dbSNP
rs1205031626 1542 dbSNP
rs146291637 1547 dbSNP
rs1436720993 1552 dbSNP
rs942482223 1557 dbSNP
rs139498047 1561 dbSNP
rs1264825698 1567 dbSNP
rs1205880524 1575 dbSNP
rs1039821848 1577 dbSNP
rs1046283575 1583 dbSNP
rs750507340 1589 dbSNP
rs1220792783 1590 dbSNP
rs1235081380 1593 dbSNP
rs886259492 1595 dbSNP
rs1479676244 1598 dbSNP
rs898173999 1606 dbSNP
rs1338547832 1607 dbSNP
rs559938851 1610 dbSNP
rs1400842935 1611 dbSNP
rs568530027 1613 dbSNP
rs1375132143 1622 dbSNP
rs1174373412 1626 dbSNP
rs1416557336 1627 dbSNP
rs1426440890 1628 dbSNP
rs756315679 1636 dbSNP
rs1430253441 1641 dbSNP
rs757106355 1645 dbSNP
rs182199762 1646 dbSNP
rs1193841795 1650 dbSNP
rs1038001043 1652 dbSNP
rs1481510202 1655 dbSNP
rs535964499 1656 dbSNP
rs899169322 1666 dbSNP
rs887047516 1669 dbSNP
rs1013905929 1673 dbSNP
rs1272142138 1684 dbSNP
rs7302815 1685 dbSNP
rs1280164741 1688 dbSNP
rs185633479 1693 dbSNP
rs114384642 1699 dbSNP
rs1008919437 1702 dbSNP
rs190046680 1708 dbSNP
rs1302238234 1713 dbSNP
rs1032393802 1714 dbSNP
rs1259468090 1719 dbSNP
rs1345897774 1722 dbSNP
rs967491549 1724 dbSNP
rs371674416 1735 dbSNP
rs1489541394 1736 dbSNP
rs768973552 1739 dbSNP
rs1170744681 1742 dbSNP
rs1033644766 1743 dbSNP
rs543404488 1746 dbSNP
rs561535445 1747 dbSNP
rs572849778 1750 dbSNP
rs955014134 1772 dbSNP
rs1183257851 1778 dbSNP
rs1489985023 1782 dbSNP
rs1472969543 1810 dbSNP
rs916229576 1814 dbSNP
rs1232097114 1821 dbSNP
rs1222237578 1832 dbSNP
rs779337364 1843 dbSNP
rs1258676915 1846 dbSNP
rs573354105 1860 dbSNP
rs910721573 1872 dbSNP
rs375901818 1876 dbSNP
rs1310778772 1882 dbSNP
rs1230246560 1883 dbSNP
rs907726072 1887 dbSNP
rs919716506 1896 dbSNP
rs940481723 1901 dbSNP
rs931046224 1905 dbSNP
rs1037634088 1906 dbSNP
rs1046743823 1907 dbSNP
rs1241691087 1908 dbSNP
rs537177237 1911 dbSNP
rs931917606 1912 dbSNP
rs1013523332 1915 dbSNP
rs74797732 1916 dbSNP
rs890443287 1919 dbSNP
rs1008950660 1924 dbSNP
rs1041762130 1926 dbSNP
rs1441346915 1929 dbSNP
rs1162849021 1933 dbSNP
rs149569151 1935 dbSNP
rs1468040455 1945 dbSNP
rs182979856 1951 dbSNP
rs1000805495 1952 dbSNP
rs1033179004 1956 dbSNP
rs913030373 1960 dbSNP
rs959235415 1961 dbSNP
rs867932014 1962 dbSNP
rs1238373727 1970 dbSNP
rs1009643562 1983 dbSNP
rs1325452125 1984 dbSNP
rs368646262 1984 dbSNP
rs1366197137 1986 dbSNP
rs1013152871 1989 dbSNP
rs1430834454 1993 dbSNP
rs564796089 1995 dbSNP
rs1458005936 1997 dbSNP
rs1271374973 2000 dbSNP
rs1421229876 2002 dbSNP
rs1380693948 2011 dbSNP
rs1020983927 2012 dbSNP
rs954832101 2013 dbSNP
rs1431359771 2014 dbSNP
rs1268190967 2015 dbSNP
rs1245935557 2030 dbSNP
rs1023317987 2031 dbSNP
rs987746922 2035 dbSNP
rs1262680651 2040 dbSNP
rs1214736486 2041 dbSNP
rs1356213230 2042 dbSNP
rs970356669 2053 dbSNP
rs1234094605 2054 dbSNP
rs1310934214 2073 dbSNP
rs1304092198 2074 dbSNP
rs868210929 2083 dbSNP
rs910827051 2097 dbSNP
rs1203711206 2098 dbSNP
rs1261300926 2100 dbSNP
rs188462299 2107 dbSNP
rs907593424 2109 dbSNP
rs1464396226 2113 dbSNP
rs964987947 2118 dbSNP
rs550109527 2122 dbSNP
rs1447740260 2137 dbSNP
rs11615799 2140 dbSNP
rs1241434245 2141 dbSNP
rs1191680679 2144 dbSNP
rs1444056220 2144 dbSNP
rs778193062 2155 dbSNP
rs973564211 2163 dbSNP
rs1264229310 2165 dbSNP
rs1482494205 2170 dbSNP
rs370533755 2170 dbSNP
rs531719951 2170 dbSNP
rs973686264 2178 dbSNP
rs1258227541 2180 dbSNP
rs1275746736 2181 dbSNP
rs7299506 2181 dbSNP
rs557070964 2182 dbSNP
rs1182965836 2185 dbSNP
rs1219994030 2187 dbSNP
rs12321505 2189 dbSNP
rs746718292 2191 dbSNP
rs1211355588 2192 dbSNP
rs1303288591 2192 dbSNP
rs1311922335 2192 dbSNP
rs1340717022 2192 dbSNP
rs1385732533 2192 dbSNP
rs1394015383 2192 dbSNP
rs1404099188 2192 dbSNP
rs1162812948 2193 dbSNP
rs1181063539 2193 dbSNP
rs1184553836 2193 dbSNP
rs1187125629 2193 dbSNP
rs1188645680 2193 dbSNP
rs1199944094 2193 dbSNP
rs1201446893 2193 dbSNP
rs1236829894 2193 dbSNP
rs1242162655 2193 dbSNP
rs1254912221 2193 dbSNP
rs1256764249 2193 dbSNP
rs1258699929 2193 dbSNP
rs1283176158 2193 dbSNP
rs1288520408 2193 dbSNP
rs1313143378 2193 dbSNP
rs1318023010 2193 dbSNP
rs1333308748 2193 dbSNP
rs1341960839 2193 dbSNP
rs1374530013 2193 dbSNP
rs1390652285 2193 dbSNP
rs1401134000 2193 dbSNP
rs1422365562 2193 dbSNP
rs1424543947 2193 dbSNP
rs1439511191 2193 dbSNP
rs1456574281 2193 dbSNP
rs1457695856 2193 dbSNP
rs1457767563 2193 dbSNP
rs1461414799 2193 dbSNP
rs1467198476 2193 dbSNP
rs1478866701 2193 dbSNP
rs57148356 2193 dbSNP
rs58912558 2193 dbSNP
rs1207611204 2194 dbSNP
rs1357999488 2196 dbSNP
rs1459278274 2198 dbSNP
rs1156527466 2199 dbSNP
rs1383813349 2201 dbSNP
rs1265703203 2202 dbSNP
rs1400991972 2204 dbSNP
rs1239111004 2206 dbSNP
rs1374404140 2207 dbSNP
rs1322135309 2208 dbSNP
rs1380000161 2209 dbSNP
rs1447421919 2209 dbSNP
rs1451211995 2210 dbSNP
rs1316385750 2211 dbSNP
rs931075985 2212 dbSNP
rs1164077317 2213 dbSNP
rs1419416217 2213 dbSNP
rs1385528853 2214 dbSNP
rs1237352004 2215 dbSNP
rs1160891261 2217 dbSNP
rs1440830799 2219 dbSNP
rs1260563342 2220 dbSNP
rs1196089427 2221 dbSNP
rs1046776726 2222 dbSNP
rs1267551406 2223 dbSNP
rs1215452389 2224 dbSNP
rs1287877488 2225 dbSNP
rs58681788 2226 dbSNP
rs12321567 2228 dbSNP
rs1207161302 2230 dbSNP
rs1261474275 2231 dbSNP
rs868428842 2232 dbSNP
rs369905957 2233 dbSNP
rs1204342194 2235 dbSNP
rs1238388523 2236 dbSNP
rs911912326 2237 dbSNP
rs944674042 2238 dbSNP
rs1179561475 2240 dbSNP
rs1420735417 2244 dbSNP
rs1425032637 2246 dbSNP
rs1041692276 2247 dbSNP
rs1363085155 2248 dbSNP
rs903305264 2249 dbSNP
rs1377693907 2251 dbSNP
rs1000267475 2255 dbSNP
rs1192378028 2256 dbSNP
rs1055059445 2257 dbSNP
rs1264935981 2261 dbSNP
rs894612008 2264 dbSNP
rs1276352062 2265 dbSNP
rs1013602550 2266 dbSNP
rs1160952853 2271 dbSNP
rs1024521662 2278 dbSNP
rs1345712055 2283 dbSNP
rs1468835233 2288 dbSNP
rs769326700 2290 dbSNP
rs1003246993 2297 dbSNP
rs12308206 2302 dbSNP
rs539598542 2310 dbSNP
rs573801515 2311 dbSNP
rs1306875271 2317 dbSNP
rs1280368885 2323 dbSNP
rs1431870688 2324 dbSNP
rs1358962784 2326 dbSNP
rs1336775232 2337 dbSNP
rs1332683670 2341 dbSNP
rs1230568180 2342 dbSNP
rs1156905885 2346 dbSNP
rs569924132 2346 dbSNP
rs1407531349 2351 dbSNP
rs773694105 2353 dbSNP
rs1476571346 2363 dbSNP
rs536947730 2369 dbSNP
rs1009350231 2373 dbSNP
rs1472307547 2380 dbSNP
rs1204404920 2384 dbSNP
rs1235521744 2394 dbSNP
rs1212049165 2401 dbSNP
rs1265143379 2415 dbSNP
rs1479698519 2416 dbSNP
rs1257391518 2417 dbSNP
rs1198046541 2418 dbSNP
rs1194048762 2421 dbSNP
rs1249668361 2429 dbSNP
rs986014424 2429 dbSNP
rs1438213469 2431 dbSNP
rs1378792714 2438 dbSNP
rs1017586274 2440 dbSNP
rs369531924 2443 dbSNP
rs944623027 2445 dbSNP
rs542799403 2446 dbSNP
rs1331281209 2447 dbSNP
rs148480925 2449 dbSNP
rs372026870 2459 dbSNP
rs571763559 2459 dbSNP
rs950847864 2459 dbSNP
rs1426785609 2466 dbSNP
rs1170619377 2469 dbSNP
rs982504044 2478 dbSNP
rs573317247 2484 dbSNP
rs924619786 2491 dbSNP
rs936094824 2493 dbSNP
rs1054520144 2499 dbSNP
rs1445052995 2504 dbSNP
rs1237442135 2527 dbSNP
rs144283203 2537 dbSNP
rs1456448704 2545 dbSNP
rs1260060832 2548 dbSNP
rs1205369490 2554 dbSNP
rs1321314693 2560 dbSNP
rs1043780 2565 dbSNP
rs530443833 2573 dbSNP
rs544075988 2575 dbSNP
rs926297938 2587 dbSNP
rs1309080354 2594 dbSNP
rs937926130 2606 dbSNP
rs1298128051 2607 dbSNP
rs1397789307 2608 dbSNP
rs1045926355 2609 dbSNP
rs907495373 2611 dbSNP
rs1301620565 2620 dbSNP
rs1004451889 2622 dbSNP
rs553001295 2631 dbSNP
rs1435184830 2632 dbSNP
rs893649950 2634 dbSNP
rs1166503781 2642 dbSNP
rs1043781 2644 dbSNP
rs573046625 2648 dbSNP
rs1027369086 2659 dbSNP
rs1441442723 2682 dbSNP
rs1251206799 2699 dbSNP
rs191690838 2704 dbSNP
rs1018034703 2708 dbSNP
rs1245139440 2709 dbSNP
rs900475467 2719 dbSNP
rs1224050147 2720 dbSNP
rs1490592866 2726 dbSNP
rs1285743674 2738 dbSNP
rs767471117 2739 dbSNP
rs1356433538 2741 dbSNP
rs1018714814 2750 dbSNP
rs1207194743 2751 dbSNP
rs1266590428 2754 dbSNP
rs1490116084 2761 dbSNP
rs566684306 2765 dbSNP
rs965963549 2766 dbSNP
rs1199758347 2768 dbSNP
rs543784172 2777 dbSNP
rs1027829684 2783 dbSNP
rs950960793 2790 dbSNP
rs148754408 2792 dbSNP
rs1364258189 2810 dbSNP
rs1024461572 2812 dbSNP
rs1426250905 2816 dbSNP
rs970914245 2833 dbSNP
rs1201760271 2838 dbSNP
rs1374157343 2839 dbSNP
rs1262793606 2857 dbSNP
rs773066873 2862 dbSNP
rs1487068430 2870 dbSNP
rs200981302 2886 dbSNP
rs1223636667 2887 dbSNP
rs1275934711 2887 dbSNP
rs1339399698 2887 dbSNP
rs371599051 2887 dbSNP
rs58258956 2887 dbSNP
rs1401551821 2894 dbSNP
rs1385403695 2899 dbSNP
rs183921313 2900 dbSNP
rs1365393872 2902 dbSNP
rs878907319 2903 dbSNP
rs1480824419 2904 dbSNP
rs76126895 2905 dbSNP
rs1295532849 2906 dbSNP
rs1360043208 2907 dbSNP
rs1005005240 2910 dbSNP
rs1296456285 2913 dbSNP
rs1344400400 2917 dbSNP
rs1230571184 2919 dbSNP
rs1289476271 2921 dbSNP
rs937625209 2926 dbSNP
rs1265574821 2939 dbSNP
rs1418017441 2942 dbSNP
rs1409853239 2944 dbSNP
rs1335410840 2945 dbSNP
rs1377699400 2947 dbSNP
rs1265525882 2950 dbSNP
rs372699641 2953 dbSNP
rs1312571447 2956 dbSNP
rs1207524502 2958 dbSNP
rs1288767875 2959 dbSNP
rs1414986864 2962 dbSNP
rs1326714031 2979 dbSNP
rs1311724335 2982 dbSNP
rs1432998864 2989 dbSNP
rs990646307 2991 dbSNP
rs566176973 2995 dbSNP
rs1338703722 3027 dbSNP
rs948782068 3032 dbSNP
rs760783617 3034 dbSNP
rs112507683 3036 dbSNP
rs1470312767 3039 dbSNP
rs754044398 3041 dbSNP
rs188857754 3043 dbSNP
rs746590356 3045 dbSNP
rs191595666 3049 dbSNP
rs1448320274 3053 dbSNP
rs897487303 3056 dbSNP
rs1190432564 3057 dbSNP
rs1241054087 3060 dbSNP
rs1188230502 3062 dbSNP
rs1373896068 3064 dbSNP
rs994481374 3067 dbSNP
rs1164468664 3068 dbSNP
rs1042643147 3074 dbSNP
rs890266505 3075 dbSNP
rs1174881597 3080 dbSNP
rs765433746 3082 dbSNP
rs1397423704 3084 dbSNP
rs1027730022 3085 dbSNP
rs1370112227 3095 dbSNP
rs1173343275 3096 dbSNP
rs1264527707 3103 dbSNP
rs944804029 3106 dbSNP
rs1039079650 3107 dbSNP
rs183742443 3108 dbSNP
rs1453399386 3112 dbSNP
rs1289634599 3119 dbSNP
rs1393246365 3121 dbSNP
rs1397418329 3128 dbSNP
rs1162902769 3129 dbSNP
rs1367503137 3134 dbSNP
rs1456650561 3164 dbSNP
rs758729715 3177 dbSNP
rs555226898 3186 dbSNP
rs567248612 3188 dbSNP
rs1450477015 3191 dbSNP
rs994832779 3198 dbSNP
rs1312874933 3202 dbSNP
rs778302091 3208 dbSNP
rs1439595527 3210 dbSNP
rs534313602 3213 dbSNP
rs965825009 3226 dbSNP
rs1183305818 3229 dbSNP
rs1049048001 3254 dbSNP
rs998729104 3260 dbSNP
rs886718482 3262 dbSNP
rs187292222 3265 dbSNP
rs1292212194 3269 dbSNP
rs191859127 3271 dbSNP
rs1228689390 3273 dbSNP
rs544782155 3288 dbSNP
rs1314681591 3293 dbSNP
rs1024908404 3294 dbSNP
rs971567309 3297 dbSNP
rs1031551976 3300 dbSNP
rs957509303 3302 dbSNP
rs990208473 3303 dbSNP
rs1003710284 3316 dbSNP
rs1323051391 3319 dbSNP
rs1403318094 3325 dbSNP
rs558304804 3326 dbSNP
rs1314908440 3328 dbSNP
rs1160816432 3332 dbSNP
rs1470143600 3339 dbSNP
rs1880893 3344 dbSNP
rs959105949 3347 dbSNP
rs755564442 3349 dbSNP
rs1201155188 3350 dbSNP
rs1269204582 3351 dbSNP
rs1215562244 3354 dbSNP
rs1243082847 3361 dbSNP
rs989167573 3363 dbSNP
rs1184104031 3370 dbSNP
rs914897778 3375 dbSNP
rs763757227 3379 dbSNP
rs966630129 3389 dbSNP
rs544031583 3390 dbSNP
rs151196086 3392 dbSNP
rs1284195979 3393 dbSNP
rs911716572 3395 dbSNP
rs1391057049 3401 dbSNP
rs1343810822 3403 dbSNP
rs1320768722 3410 dbSNP
rs928806772 3421 dbSNP
rs940132353 3426 dbSNP
rs139736149 3433 dbSNP
rs1406904384 3436 dbSNP
rs1448755340 3439 dbSNP
rs1192485890 3445 dbSNP
rs1476673305 3455 dbSNP
rs944522543 3463 dbSNP
rs1193691211 3470 dbSNP
rs1039273035 3486 dbSNP
rs1304485277 3492 dbSNP
rs1370975359 3494 dbSNP
rs1201804536 3504 dbSNP
rs1325778633 3506 dbSNP
rs1263919449 3507 dbSNP
rs1218246315 3508 dbSNP
rs78694063 3511 dbSNP
rs147650806 3515 dbSNP
rs1330697386 3520 dbSNP
rs545025060 3522 dbSNP
rs11178896 3523 dbSNP
rs886415891 3531 dbSNP
rs1454052619 3536 dbSNP
rs1406168433 3537 dbSNP
rs1169409553 3538 dbSNP
rs1262035999 3542 dbSNP
rs1421253022 3545 dbSNP
rs1005565840 3555 dbSNP
rs1212916832 3558 dbSNP
rs1472358416 3562 dbSNP
rs888753409 3566 dbSNP
rs1007278900 3567 dbSNP
rs907439192 3568 dbSNP
rs1480528667 3569 dbSNP
rs1243811282 3571 dbSNP
rs537443919 3572 dbSNP
rs1305957258 3573 dbSNP
rs184038750 3576 dbSNP
rs1215461758 3583 dbSNP
rs551599721 3584 dbSNP
rs901691071 3589 dbSNP
rs998732442 3606 dbSNP
rs1031921341 3610 dbSNP
rs190036412 3613 dbSNP
rs530597671 3617 dbSNP
rs995796258 3618 dbSNP
rs1010631237 3620 dbSNP
rs1355868700 3623 dbSNP
rs1329147597 3628 dbSNP
rs771782650 3629 dbSNP
rs1383154489 3634 dbSNP
rs548808992 3650 dbSNP
rs981528579 3653 dbSNP
rs928671076 3654 dbSNP
rs1308466275 3662 dbSNP
rs141939083 3663 dbSNP
rs571152149 3665 dbSNP
rs1234748876 3671 dbSNP
rs1402758783 3672 dbSNP
rs546139934 3674 dbSNP
rs931593697 3685 dbSNP
rs1050406728 3690 dbSNP
rs1360740791 3696 dbSNP
rs910220526 3697 dbSNP
rs1271510379 3700 dbSNP
rs773221740 3701 dbSNP
rs1374887363 3717 dbSNP
rs1279698854 3733 dbSNP
rs1435297246 3734 dbSNP
rs571178902 3740 dbSNP
rs943004234 3742 dbSNP
rs538694346 3745 dbSNP
rs901640743 3752 dbSNP
rs1425103786 3755 dbSNP
rs1359767959 3757 dbSNP
rs374964504 3764 dbSNP
rs1156841138 3778 dbSNP
rs1420877254 3780 dbSNP
rs934389029 3782 dbSNP
rs556767759 3783 dbSNP
rs1480212523 3789 dbSNP
rs1267070674 3790 dbSNP
rs760691093 3791 dbSNP
rs1225119303 3792 dbSNP
rs892931757 3793 dbSNP
rs1011513453 3795 dbSNP
rs1285855269 3799 dbSNP
rs540182828 3804 dbSNP
rs1022851992 3808 dbSNP
rs1307063756 3810 dbSNP
rs150100539 3815 dbSNP
rs1002910214 3820 dbSNP
rs776836529 3826 dbSNP
rs1405271956 3828 dbSNP
rs80335341 3828 dbSNP
rs930744583 3828 dbSNP
rs79811229 3829 dbSNP
rs1339588215 3832 dbSNP
rs1035672366 3837 dbSNP
rs1455262953 3852 dbSNP
rs907885573 3854 dbSNP
rs759737309 3868 dbSNP
rs973198172 3869 dbSNP
rs755089163 3870 dbSNP
rs765466949 3873 dbSNP
rs940734329 3876 dbSNP
rs1027170465 3878 dbSNP
rs1427386620 3878 dbSNP
rs779208746 3887 dbSNP
rs60230279 3891 dbSNP
rs937575161 3895 dbSNP
rs911507988 3911 dbSNP
rs1185196759 3918 dbSNP
rs1429099592 3922 dbSNP
rs181620602 3941 dbSNP
rs893284801 3945 dbSNP
rs1372229826 3948 dbSNP
rs1320820497 3950 dbSNP
rs1264531604 3951 dbSNP
rs751999191 3956 dbSNP
rs757757974 3968 dbSNP
rs1316973266 3978 dbSNP
rs1422461509 3979 dbSNP
rs1302181434 3981 dbSNP
rs975744570 3984 dbSNP
rs781709430 4000 dbSNP
rs370805310 4010 dbSNP
rs902253664 4017 dbSNP
rs1451916364 4019 dbSNP
rs934440696 4020 dbSNP
rs1360656646 4025 dbSNP
rs1470415451 4036 dbSNP
rs1229839755 4040 dbSNP
rs748777435 4043 dbSNP
rs574344215 4045 dbSNP
rs1168728710 4046 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuaauuuguUAAGAGAc 5'
                   ||||||| 
Target 5' --------uAUUCUCUc 3'
 		1 - 9
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000266673.5 | 3UTR | UAUUCUCUCUUACACUGUAGCCUCAACUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
113 hsa-miR-3123 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058369 TBCEL tubulin folding cofactor E like 2 4
MIRT059816 EFNA1 ephrin A1 2 2
MIRT066850 TMEM19 transmembrane protein 19 2 2
MIRT071503 CALM1 calmodulin 1 2 6
MIRT073758 NUBP1 nucleotide binding protein 1 2 2
MIRT074324 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT094805 LMNB1 lamin B1 2 2
MIRT099173 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT099545 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT122643 E2F3 E2F transcription factor 3 2 2
MIRT180918 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 8
MIRT192844 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT224984 BAG4 BCL2 associated athanogene 4 2 2
MIRT246065 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT357085 PRRC1 proline rich coiled-coil 1 2 2
MIRT378170 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441636 KDM5A lysine demethylase 5A 2 2
MIRT441802 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT443019 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443445 SERPINB4 serpin family B member 4 2 2
MIRT443661 SERPINB3 serpin family B member 3 2 2
MIRT443776 STS steroid sulfatase 2 2
MIRT444663 TSPAN14 tetraspanin 14 2 2
MIRT444924 KIAA1522 KIAA1522 2 2
MIRT445378 FOXO1 forkhead box O1 2 2
MIRT447920 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT449202 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449713 TSPYL1 TSPY like 1 2 2
MIRT450403 TMEM47 transmembrane protein 47 2 2
MIRT450787 PAPOLG poly(A) polymerase gamma 2 2
MIRT451381 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT452507 WDR1 WD repeat domain 1 2 2
MIRT453264 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT454642 FAM83H family with sequence similarity 83 member H 2 2
MIRT455513 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT456709 LDB1 LIM domain binding 1 2 2
MIRT457231 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT459235 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT460553 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT461424 CTSL2 cathepsin V 2 3
MIRT462869 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT467178 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT469233 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT474125 LIPC lipase C, hepatic type 2 2
MIRT475509 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT478134 DHX36 DEAH-box helicase 36 2 2
MIRT481326 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT482003 AMOTL2 angiomotin like 2 2 2
MIRT482230 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483436 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483824 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT492051 TNFSF9 TNF superfamily member 9 2 2
MIRT494114 DLX6 distal-less homeobox 6 2 2
MIRT498882 ZNF12 zinc finger protein 12 2 10
MIRT499674 NPHP3 nephrocystin 3 2 2
MIRT506932 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT509461 ZNF587 zinc finger protein 587 2 6
MIRT510048 AKR1B10 aldo-keto reductase family 1 member B10 2 4
MIRT514807 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT515217 CRCP CGRP receptor component 2 2
MIRT515486 INCENP inner centromere protein 2 4
MIRT517765 ZNF366 zinc finger protein 366 2 4
MIRT518216 TRMT10B tRNA methyltransferase 10B 2 2
MIRT519602 ZNF805 zinc finger protein 805 2 2
MIRT523570 GGCX gamma-glutamyl carboxylase 2 4
MIRT525795 SOD2 superoxide dismutase 2 2 2
MIRT533055 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT534218 SLC37A3 solute carrier family 37 member 3 2 4
MIRT535633 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT535863 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT536344 LEFTY1 left-right determination factor 1 2 2
MIRT537923 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT543114 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT544717 ZNF529 zinc finger protein 529 2 2
MIRT544847 BASP1 brain abundant membrane attached signal protein 1 2 4
MIRT545536 ARF3 ADP ribosylation factor 3 2 2
MIRT547124 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548070 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548446 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548626 DAZAP1 DAZ associated protein 1 2 4
MIRT550259 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT551940 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552511 ZIK1 zinc finger protein interacting with K protein 1 2 4
MIRT554015 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT556647 KPNA2 karyopherin subunit alpha 2 2 4
MIRT559744 ACOX1 acyl-CoA oxidase 1 2 2
MIRT560393 TMEM254 transmembrane protein 254 2 2
MIRT562234 HMGB2 high mobility group box 2 2 2
MIRT563325 ORC4 origin recognition complex subunit 4 2 2
MIRT563697 RPS26 ribosomal protein S26 2 2
MIRT565066 USP25 ubiquitin specific peptidase 25 2 2
MIRT565349 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565624 SLC31A1 solute carrier family 31 member 1 2 2
MIRT566379 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT567575 FEM1C fem-1 homolog C 2 2
MIRT569383 DDX20 DEAD-box helicase 20 2 2
MIRT570037 FAM228A family with sequence similarity 228 member A 2 2
MIRT573269 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573912 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT620034 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT635606 ZWILCH zwilch kinetochore protein 2 2
MIRT644413 FRMD6 FERM domain containing 6 2 2
MIRT652528 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT656238 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT661373 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662530 PNPLA4 patatin like phospholipase domain containing 4 2 2
MIRT675551 MALL mal, T-cell differentiation protein like 2 2
MIRT693650 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT696348 SLC35D2 solute carrier family 35 member D2 2 2
MIRT705815 AKNA AT-hook transcription factor 2 2
MIRT707632 TARDBP TAR DNA binding protein 2 2
MIRT717902 COPS8 COP9 signalosome subunit 8 2 2
MIRT723626 SOBP sine oculis binding protein homolog 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3123 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3123 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3123 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)

Error report submission