miRTarBase - #MIRT067243


—
pre-miRNA Information
pre-miRNA hsa-mir-520e   
Genomic Coordinates chr19: 53675711 - 53675797
Description Homo sapiens miR-520e stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-520e
Sequence 54| AAAGUGCUUCCUUUUUGAGGG |74
Evidence Experimental
Experiments Array-cloned
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FOXJ2   
Synonyms FHX
Description forkhead box J2
Transcript NM_018416   
Expression
Putative miRNA Targets on FOXJ2
3'UTR of FOXJ2
(miRNA target sites are highlighted)		 
>FOXJ2|NM_018416|3'UTR
   1 TGCATCACAGAGTGTGGACATCAGCCCAGGGCCGCGTGGTGAAATCTGGCAGTGGGGAAAGAGCAACCCCAGCCCGTCCC
  81 TTCCCCCCGTCTGTATATAGACATATATCCTCTTTTTGTTCTTTCTCTGTCAGAGAAGCCACTGCAAGATGCTGCCGAAG
 161 ATAACCCTCTCTTTCCTGCCTCATTCTTCTCTCTTCCTTCCTGTTTTTTCCTAGTTCTTTTATTATTATTCTTATATTAT
 241 TATTATTATTATTGGTTATATACTGTCCATAGTCTCCTGTCCCTACATCATGGATCATGTCCACCTTTTGCTAATTTAAA
 321 ATCATCAGGCTGGAAGATGAAGCCATGATAGCTACAGAGAAAGGTTTTAGACTCCAGTTTACCTTTCTCTTGGAGAAACT
 401 CAATGCTAATCCCACCTTTTGGCCCTAAATTGTTTTTTGTTCCCATCAGTTTCAGGCCAGGACTGGAGAGGCCACATTAC
 481 CAAGTAGAAAGGGTCTGAAACATTACTTGGCAGCCAAGAATTTGGAGGTTTTAAAATGGTGCTAATTCTGTCCTCTGAGG
 561 TCTTCCTTGTCCCTTTATACCTTCAATCCTTACTTCTGCCAGTCTGTATTTCCTATCAAGGGTGAAAGTGATGATGGTGG
 641 TGCAGGAGGGTGACAATAAAATCCTAGTGGAATTGGAGACCATTGGAAGGGATGGAATATAAGTCAGTGTGAAACTGAGT
 721 ATACACTGCCATGTTACATCAGTGTCCATTGGCTTGTTTTGAGCCTGTTCTCTAAGAAGATAGGATTGGTTTTAGCCCAA
 801 ACTCTGCTTCTATGGTAGGGCATGAGGACAACTATTCAGCATGGTTTTAGCTTCTTGGAGATGATTCCAACTTAACTATT
 881 TTGGCTTTTTAAACATAATTTTCTCTGAAAATTAATTGTGGCTCTTATTTGCATTTACGAATGATCTTCCCATCCCTTTT
 961 TCCCATTCAGCAAATATTAGTTTGTCCTCCTTTAATTGTTTGCCCAAATCTTCCACCCATCTTTTTTCTTCCCTCATTTT
1041 CTGGGATTCTCAAGAAAGAAAAAGTAACCCATTATCACTCTGAGTTTCGTCGTGCCCTGAGACATGATGGGAATCTCATT
1121 CCCACCTCTCATAGCAGAGCCAAACCTTTAGTGTTGGTGGTAGGAGGATGGGGAGAGGAAAAAAGAGCTGGCAAAGAAAT
1201 GGATAGGGAATATTTTAGTTCTTTAAATATATAGGCAGATGCTTCTCTTGGAATCCAGATCATCTGGCTGAAGCTTTTGC
1281 AAGTAGGCTTTGAGGGGTGAAGGAGATTGGTGGAGGAGAGTAAATAATCTAGAGGCAAGAGTTCAGTGAGGGCCAAGGGG
1361 GACCCCCAGAAAAAGGTATGGAGCTAACTCATCTCTTTTACAAGGGGTGGCCATGACTTACTGTTGCAAAGTACTCAGTG
1441 TATATTTAATGTTGATTGTTGAATTTTAGTTACGAGAGGGAAGAACAATTTTACTTCTGTCCTTATTTCACTTGCTGAAA
1521 AGCTGTGGGACAAAATGTATGGAATAGACAAGGCCACTTTCTTTGTGATTTCTGCTTTTCATGCATATTATTTTATTTAC
1601 CCATAATTTCCAAGAGGTTTGGCGTTCCGCTCTCCTGCTTTTTTCTTTCATCCACCCCTTTCCTTTTTTTGGAAGGGGGT
1681 TATATATGAGAGTTCATTGAAGAAGTCCAGTGAGGCTGAAGTAAAGGGGCAAGATAGGGCAGTTAACTAAAGAGCACTTT
1761 ATTTCTTTGAAGCCTTTCTAAGAAAGAAATGGGGGTGCGAGTGGCTTGAATCTCCCATGATGTTGGAGGGCACTTAGTGG
1841 GGTTGAAGTATGACATAATATTTCCCATTGGGGAAAGGAGAATTTCTCTTAGAGGGTGGCAAAATGCCTTTGCCCAGTGT
1921 CCCTATTTTAGGCATCTTTTCCTTCCTTATTCCTTCCAGTCAGGGTGTGTCCTATACAAAACTTCCCATCAGTTCTCCTC
2001 AATATTCCCCATTTGTAAATGATCACTTCTCTTTTCTAAACCCTTTTCCTGTTCAGATCCATACAGGATTTGCAAGGGTA
2081 GGATCATACATGCAAATGCCCCTTGTTCATCTGTGTCTTCTGCAAACTAGTCTCATGAAGAATTCTGGCGTGCAGCCAGG
2161 GTAGCTGAAGTTTGGGTCTGGGACTGGAGATTGGCCATTAGGCCTCCTGAGATTCCAGCTCCCTTCCACCAAGCCCAGTC
2241 TTGCTACGTGGCACAGGGCAAACCTGACTCCCTTTGGGCCTCAGTTTCCCCTCCCCTTCATGAAATGAAAAGAATACTAC
2321 TTTTTCTTGTTGGTCTAGCATTGCTGGACACAAAGTGTAGTCATTATTGTTGTATTGGGTGATGTGTGCAAAACTGCAGA
2401 AGCTCACTGCCTATAAGAGGAAATAAGAGAGAAAGTGGAGGAGAGGGACAAAAGGAGTAATTATTTGGTATAGATCCACC
2481 CATCCCAACCTTTCTCTCCTCAGTCCCTGCTCCTCATGTTTCTGGTTTGGTGAGTCCTTTGTGCCACCACCCATAATGCT
2561 TTGCATTGCTGCATCCTGGGAAGGGGGTATATGGTCTCACAAGTTGTTGTCATTGTTTTTTTGCATGCTTTCTTAATAAA
2641 AAAAAAAAAAGAATGTTTACAGTTTTATCTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gggAGUU--UUUCCUUCGUGAAa 5'
             |:||  ||||  ||||||| 
Target 5' cagTTAACTAAAG--AGCACTTt 3'
 1740 - 1760 156.00 -9.60
2 
miRNA  3' gggaguuuuuCCU-UCGUGAAa 5'
                    ||| :|||||| 
Target 5' ccatgatgttGGAGGGCACTTa 3'
 1815 - 1836 131.00 -10.39
3 
miRNA  3' gggAGUUUUUC-CUUC--GUGAAa 5'
             | :|| ||  |||  ||||| 
Target 5' gtaTGGAATAGACAAGGCCACTTt 3'
 1537 - 1560 114.00 -7.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30117746 35 COSMIC
COSN30101508 37 COSMIC
COSN30475552 75 COSMIC
COSN30128443 77 COSMIC
COSN26569500 89 COSMIC
COSN24394906 90 COSMIC
COSN31546421 116 COSMIC
COSN1152662 146 COSMIC
COSN31550077 146 COSMIC
COSN26677620 161 COSMIC
COSN9736974 268 COSMIC
COSN32055560 327 COSMIC
COSN9478865 647 COSMIC
COSN28693804 722 COSMIC
COSN31590637 730 COSMIC
COSN30174731 747 COSMIC
COSN24723034 995 COSMIC
COSN5866545 1455 COSMIC
COSN5866547 1530 COSMIC
COSN17875381 1635 COSMIC
COSN21147625 2065 COSMIC
COSN26853386 2151 COSMIC
COSN31571384 2242 COSMIC
COSN26573413 2352 COSMIC
COSN8586812 2418 COSMIC
COSN8586813 2419 COSMIC
COSN31603545 2442 COSMIC
COSN31481350 2460 COSMIC
COSN5866552 2494 COSMIC
COSN31555464 2548 COSMIC
COSN28700201 2639 COSMIC
COSN31555465 2641 COSMIC
rs10846411 722 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs150114729 1 dbSNP
rs764780389 3 dbSNP
rs200457871 5 dbSNP
rs757807691 7 dbSNP
rs1483079506 9 dbSNP
rs199687210 11 dbSNP
rs372954026 12 dbSNP
rs1340433029 17 dbSNP
rs756612157 18 dbSNP
rs778249538 20 dbSNP
rs1263739607 27 dbSNP
rs1225619016 32 dbSNP
rs189205542 34 dbSNP
rs201849066 35 dbSNP
rs1205868953 36 dbSNP
rs767376889 37 dbSNP
rs1487716122 41 dbSNP
rs745960084 47 dbSNP
rs1268402983 48 dbSNP
rs1003300093 55 dbSNP
rs901545650 60 dbSNP
rs996101043 64 dbSNP
rs1396788044 71 dbSNP
rs1299481836 76 dbSNP
rs532345651 77 dbSNP
rs1417189633 83 dbSNP
rs903772344 84 dbSNP
rs1446443773 87 dbSNP
rs1001074833 88 dbSNP
rs958783083 89 dbSNP
rs1441847401 90 dbSNP
rs756091630 96 dbSNP
rs1197724416 99 dbSNP
rs1160874581 102 dbSNP
rs1482184840 104 dbSNP
rs770335643 106 dbSNP
rs1223688264 110 dbSNP
rs1362294255 114 dbSNP
rs1282884952 115 dbSNP
rs1243470337 119 dbSNP
rs1386302783 122 dbSNP
rs1407651619 125 dbSNP
rs991619841 132 dbSNP
rs1407481215 136 dbSNP
rs1369553922 150 dbSNP
rs780718269 155 dbSNP
rs754601377 157 dbSNP
rs1388493338 158 dbSNP
rs750716502 161 dbSNP
rs1162545763 166 dbSNP
rs1472523612 179 dbSNP
rs769386315 184 dbSNP
rs572799548 187 dbSNP
rs908190485 189 dbSNP
rs192889194 193 dbSNP
rs1288372409 196 dbSNP
rs952341680 215 dbSNP
rs113251326 217 dbSNP
rs984899211 218 dbSNP
rs908074769 220 dbSNP
rs1226025583 224 dbSNP
rs763156882 226 dbSNP
rs1283451720 235 dbSNP
rs940431210 235 dbSNP
rs1406578837 243 dbSNP
rs1329091143 251 dbSNP
rs975839556 256 dbSNP
rs976841928 258 dbSNP
rs1353062033 264 dbSNP
rs1387047746 265 dbSNP
rs545800947 276 dbSNP
rs183197482 277 dbSNP
rs1455658270 288 dbSNP
rs932438485 290 dbSNP
rs1200340583 293 dbSNP
rs758407316 298 dbSNP
rs1053548747 303 dbSNP
rs141695843 306 dbSNP
rs945273953 307 dbSNP
rs1250380761 318 dbSNP
rs762452369 330 dbSNP
rs1486787699 333 dbSNP
rs936621176 338 dbSNP
rs752107499 341 dbSNP
rs1327821699 346 dbSNP
rs1263398454 353 dbSNP
rs755373679 354 dbSNP
rs1002838670 365 dbSNP
rs1211923954 371 dbSNP
rs1342400961 375 dbSNP
rs1035703457 377 dbSNP
rs1274100250 383 dbSNP
rs1431185553 384 dbSNP
rs894553884 392 dbSNP
rs1318385668 401 dbSNP
rs1433032886 404 dbSNP
rs1484766800 413 dbSNP
rs1388055581 417 dbSNP
rs781729732 425 dbSNP
rs1416443715 439 dbSNP
rs1172374456 440 dbSNP
rs1475907851 446 dbSNP
rs1052251623 457 dbSNP
rs1187174329 467 dbSNP
rs1027135400 472 dbSNP
rs1464825038 485 dbSNP
rs1243264577 487 dbSNP
rs1211614527 494 dbSNP
rs1328012991 495 dbSNP
rs186992887 505 dbSNP
rs1440398777 506 dbSNP
rs952936227 508 dbSNP
rs150508114 511 dbSNP
rs1214951274 537 dbSNP
rs1343994262 539 dbSNP
rs1397326789 560 dbSNP
rs760865044 579 dbSNP
rs1435695673 581 dbSNP
rs1227619778 597 dbSNP
rs1383431750 605 dbSNP
rs1337534839 608 dbSNP
rs1450226631 609 dbSNP
rs1015822656 625 dbSNP
rs1172697816 627 dbSNP
rs966016333 657 dbSNP
rs1410900991 661 dbSNP
rs1373224497 669 dbSNP
rs976380672 674 dbSNP
rs1167066479 675 dbSNP
rs775814790 687 dbSNP
rs1411139060 700 dbSNP
rs920969061 708 dbSNP
rs1328867594 709 dbSNP
rs1024354656 713 dbSNP
rs1236572239 720 dbSNP
rs10846411 722 dbSNP
rs989219301 732 dbSNP
rs1439866537 733 dbSNP
rs138547383 738 dbSNP
rs1001911209 739 dbSNP
rs1034372038 749 dbSNP
rs1272289667 750 dbSNP
rs199852855 762 dbSNP
rs1204157881 764 dbSNP
rs17801377 768 dbSNP
rs1314696425 781 dbSNP
rs1230130957 785 dbSNP
rs1377002147 794 dbSNP
rs1348370825 795 dbSNP
rs1233279675 798 dbSNP
rs1372641340 799 dbSNP
rs1306629804 800 dbSNP
rs778513576 813 dbSNP
rs1366742342 814 dbSNP
rs945208311 819 dbSNP
rs1403122000 820 dbSNP
rs1412491571 823 dbSNP
rs751419461 825 dbSNP
rs1473400820 828 dbSNP
rs1249088598 831 dbSNP
rs1015038518 838 dbSNP
rs927871378 842 dbSNP
rs976223897 852 dbSNP
rs1345916452 854 dbSNP
rs922981558 855 dbSNP
rs1321017531 857 dbSNP
rs757876803 889 dbSNP
rs766387610 908 dbSNP
rs373401792 910 dbSNP
rs781129077 910 dbSNP
rs939296493 914 dbSNP
rs1057149323 922 dbSNP
rs1352579660 923 dbSNP
rs894501652 928 dbSNP
rs1012990840 939 dbSNP
rs1368691975 945 dbSNP
rs1048479020 950 dbSNP
rs1052388342 952 dbSNP
rs888545336 957 dbSNP
rs1173341372 966 dbSNP
rs754445332 988 dbSNP
rs764987218 992 dbSNP
rs1409350396 999 dbSNP
rs1157893897 1006 dbSNP
rs1480546465 1009 dbSNP
rs769294224 1014 dbSNP
rs1269249707 1019 dbSNP
rs949163174 1029 dbSNP
rs1488151041 1032 dbSNP
rs1046275529 1035 dbSNP
rs907255844 1036 dbSNP
rs745577130 1051 dbSNP
rs1016184904 1054 dbSNP
rs17728610 1055 dbSNP
rs1034750427 1069 dbSNP
rs998416672 1071 dbSNP
rs887818227 1072 dbSNP
rs758298343 1081 dbSNP
rs758125108 1082 dbSNP
rs1436671893 1083 dbSNP
rs1407679358 1089 dbSNP
rs1006426672 1090 dbSNP
rs114166694 1093 dbSNP
rs962278568 1098 dbSNP
rs989126174 1103 dbSNP
rs1432317041 1105 dbSNP
rs976194109 1115 dbSNP
rs1030519944 1116 dbSNP
rs1463473812 1122 dbSNP
rs1246311895 1138 dbSNP
rs953231111 1152 dbSNP
rs1483706661 1164 dbSNP
rs747442890 1169 dbSNP
rs762207947 1174 dbSNP
rs966873017 1183 dbSNP
rs985929776 1188 dbSNP
rs1298766069 1190 dbSNP
rs1231309191 1194 dbSNP
rs1363637349 1195 dbSNP
rs141536961 1197 dbSNP
rs191819539 1201 dbSNP
rs563716334 1209 dbSNP
rs1403914043 1210 dbSNP
rs1229952198 1217 dbSNP
rs867898307 1228 dbSNP
rs939229998 1232 dbSNP
rs924934515 1234 dbSNP
rs1370994916 1251 dbSNP
rs1055074626 1257 dbSNP
rs1170220561 1262 dbSNP
rs1194135304 1265 dbSNP
rs1389414086 1286 dbSNP
rs774791656 1287 dbSNP
rs754616685 1295 dbSNP
rs1258557460 1296 dbSNP
rs1198995840 1298 dbSNP
rs1483030362 1310 dbSNP
rs1275881102 1314 dbSNP
rs1207724241 1319 dbSNP
rs1275611276 1321 dbSNP
rs1469248937 1322 dbSNP
rs1193437295 1332 dbSNP
rs916511983 1333 dbSNP
rs1251468127 1335 dbSNP
rs531784269 1336 dbSNP
rs1048428810 1345 dbSNP
rs888503173 1359 dbSNP
rs1372138475 1362 dbSNP
rs1350729317 1368 dbSNP
rs1309632210 1372 dbSNP
rs1004745209 1376 dbSNP
rs949299212 1377 dbSNP
rs1474150299 1379 dbSNP
rs1163718333 1382 dbSNP
rs746538797 1388 dbSNP
rs1370310748 1394 dbSNP
rs1166388923 1395 dbSNP
rs1046639223 1396 dbSNP
rs1037185003 1400 dbSNP
rs1184793199 1414 dbSNP
rs768426316 1417 dbSNP
rs901368378 1420 dbSNP
rs998323280 1423 dbSNP
rs865952493 1428 dbSNP
rs1395173646 1430 dbSNP
rs1211014026 1432 dbSNP
rs1359045808 1437 dbSNP
rs1460812740 1438 dbSNP
rs1028509896 1443 dbSNP
rs1055923346 1469 dbSNP
rs1329428508 1472 dbSNP
rs760771028 1483 dbSNP
rs1407787899 1487 dbSNP
rs775726559 1505 dbSNP
rs1349696773 1512 dbSNP
rs954299528 1514 dbSNP
rs1323932314 1515 dbSNP
rs1388514212 1517 dbSNP
rs1388472086 1528 dbSNP
rs1010497343 1538 dbSNP
rs1460925641 1540 dbSNP
rs1022415070 1557 dbSNP
rs1296631118 1558 dbSNP
rs117731193 1561 dbSNP
rs978267042 1580 dbSNP
rs73244581 1581 dbSNP
rs1232707723 1582 dbSNP
rs1200026289 1583 dbSNP
rs898059385 1586 dbSNP
rs960498231 1602 dbSNP
rs1208753014 1604 dbSNP
rs1269453255 1607 dbSNP
rs73244583 1613 dbSNP
rs773559276 1618 dbSNP
rs751318696 1623 dbSNP
rs1275281599 1624 dbSNP
rs930554384 1625 dbSNP
rs984130896 1629 dbSNP
rs953608079 1630 dbSNP
rs76295138 1631 dbSNP
rs1389538409 1632 dbSNP
rs1279526851 1633 dbSNP
rs1455910636 1647 dbSNP
rs1032054048 1657 dbSNP
rs1173545342 1662 dbSNP
rs940106646 1665 dbSNP
rs957784512 1668 dbSNP
rs1376468581 1675 dbSNP
rs1193606866 1678 dbSNP
rs1465728394 1680 dbSNP
rs987780763 1695 dbSNP
rs1249412439 1696 dbSNP
rs1206279559 1697 dbSNP
rs766628823 1700 dbSNP
rs1037495767 1720 dbSNP
rs112273448 1722 dbSNP
rs901276615 1727 dbSNP
rs913591956 1736 dbSNP
rs751536115 1740 dbSNP
rs1418016320 1741 dbSNP
rs970618452 1749 dbSNP
rs1299993988 1750 dbSNP
rs982084972 1756 dbSNP
rs1162792408 1780 dbSNP
rs1344857921 1782 dbSNP
rs926446678 1784 dbSNP
rs937820381 1790 dbSNP
rs1416353572 1791 dbSNP
rs776484448 1794 dbSNP
rs1173391590 1795 dbSNP
rs909272605 1796 dbSNP
rs1049894314 1799 dbSNP
rs942139067 1800 dbSNP
rs914443273 1809 dbSNP
rs1474766361 1813 dbSNP
rs750370219 1817 dbSNP
rs890030756 1830 dbSNP
rs1440314136 1831 dbSNP
rs1287998166 1840 dbSNP
rs1384559501 1842 dbSNP
rs1398326118 1858 dbSNP
rs776119346 1860 dbSNP
rs183668913 1861 dbSNP
rs1356218488 1867 dbSNP
rs1021940653 1869 dbSNP
rs1311277532 1874 dbSNP
rs779603249 1877 dbSNP
rs1284834251 1879 dbSNP
rs1450534517 1896 dbSNP
rs1312660116 1897 dbSNP
rs902204381 1897 dbSNP
rs1240249732 1898 dbSNP
rs999211632 1907 dbSNP
rs1052065794 1914 dbSNP
rs1260455038 1947 dbSNP
rs767872786 1950 dbSNP
rs1413947848 1962 dbSNP
rs757959145 1966 dbSNP
rs59119945 1967 dbSNP
rs146265002 1970 dbSNP
rs1257779084 1971 dbSNP
rs139428737 1974 dbSNP
rs1185076349 1978 dbSNP
rs990618152 1989 dbSNP
rs1252580644 1990 dbSNP
rs1032940904 1995 dbSNP
rs1203795580 2001 dbSNP
rs1023506354 2002 dbSNP
rs1419556629 2003 dbSNP
rs1158127683 2023 dbSNP
rs749657077 2030 dbSNP
rs1361897877 2033 dbSNP
rs1436319931 2034 dbSNP
rs189255282 2041 dbSNP
rs1009347428 2042 dbSNP
rs1376275529 2044 dbSNP
rs1414254037 2046 dbSNP
rs371639737 2056 dbSNP
rs746319707 2065 dbSNP
rs985140788 2066 dbSNP
rs756744860 2068 dbSNP
rs1442189041 2073 dbSNP
rs907799300 2073 dbSNP
rs771131857 2080 dbSNP
rs1020624018 2083 dbSNP
rs1403035476 2084 dbSNP
rs1416762699 2087 dbSNP
rs970420493 2090 dbSNP
rs1376194892 2091 dbSNP
rs749432564 2097 dbSNP
rs939993743 2103 dbSNP
rs972762575 2106 dbSNP
rs1409558628 2110 dbSNP
rs1176409091 2112 dbSNP
rs922655910 2114 dbSNP
rs1306883171 2117 dbSNP
rs934113472 2123 dbSNP
rs1248329613 2135 dbSNP
rs759555532 2147 dbSNP
rs889974078 2150 dbSNP
rs746911180 2151 dbSNP
rs779774545 2160 dbSNP
rs1331466467 2161 dbSNP
rs1305393450 2165 dbSNP
rs1223506846 2175 dbSNP
rs1368929709 2183 dbSNP
rs983947339 2187 dbSNP
rs192769123 2191 dbSNP
rs1393165110 2194 dbSNP
rs942107867 2202 dbSNP
rs1458552396 2220 dbSNP
rs968550065 2222 dbSNP
rs1409231609 2235 dbSNP
rs746459383 2248 dbSNP
rs1034698828 2249 dbSNP
rs1427220811 2255 dbSNP
rs933299242 2256 dbSNP
rs1176591444 2261 dbSNP
rs768250286 2266 dbSNP
rs1248322184 2270 dbSNP
rs1252512958 2271 dbSNP
rs748322349 2280 dbSNP
rs1209433214 2291 dbSNP
rs1052210460 2302 dbSNP
rs149927732 2313 dbSNP
rs1193963788 2315 dbSNP
rs889348591 2318 dbSNP
rs1395955948 2323 dbSNP
rs1023460422 2324 dbSNP
rs748157302 2328 dbSNP
rs1174191212 2330 dbSNP
rs1356398977 2354 dbSNP
rs951830945 2356 dbSNP
rs1232818904 2357 dbSNP
rs776464864 2360 dbSNP
rs185494591 2373 dbSNP
rs1297703770 2382 dbSNP
rs1436576762 2383 dbSNP
rs1462561995 2411 dbSNP
rs1382352964 2412 dbSNP
rs1287885392 2413 dbSNP
rs1015217732 2414 dbSNP
rs1360733339 2420 dbSNP
rs1173676903 2430 dbSNP
rs1375258576 2433 dbSNP
rs1390637910 2435 dbSNP
rs566574697 2438 dbSNP
rs144068742 2439 dbSNP
rs1259948053 2441 dbSNP
rs1304572343 2442 dbSNP
rs1369813557 2446 dbSNP
rs973139268 2461 dbSNP
rs1217162338 2465 dbSNP
rs1258209934 2468 dbSNP
rs1209093292 2469 dbSNP
rs14586 2470 dbSNP
rs1274636081 2472 dbSNP
rs1347809017 2475 dbSNP
rs1275914816 2476 dbSNP
rs906282424 2481 dbSNP
rs1294206302 2488 dbSNP
rs769711298 2489 dbSNP
rs773078875 2490 dbSNP
rs1396307651 2498 dbSNP
rs878859412 2500 dbSNP
rs1380881531 2503 dbSNP
rs985535631 2507 dbSNP
rs911317895 2508 dbSNP
rs1433804009 2510 dbSNP
rs762824770 2510 dbSNP
rs1203189152 2513 dbSNP
rs1371107112 2514 dbSNP
rs1043902065 2516 dbSNP
rs1469733570 2535 dbSNP
rs1214122771 2537 dbSNP
rs1252198526 2548 dbSNP
rs1371470876 2554 dbSNP
rs1169824483 2574 dbSNP
rs1424623503 2575 dbSNP
rs984475226 2585 dbSNP
rs1016716986 2592 dbSNP
rs1485526963 2599 dbSNP
rs961235896 2603 dbSNP
rs1189767915 2606 dbSNP
rs1207980279 2607 dbSNP
rs190794462 2612 dbSNP
rs1429217875 2614 dbSNP
rs1250336832 2615 dbSNP
rs1169750749 2618 dbSNP
rs1244795558 2619 dbSNP
rs1323156936 2629 dbSNP
rs1291003634 2634 dbSNP
rs1398778888 2635 dbSNP
rs1413970608 2637 dbSNP
rs113361713 2638 dbSNP
rs1309612031 2638 dbSNP
rs1395606719 2638 dbSNP
rs201061994 2638 dbSNP
rs76425930 2638 dbSNP
rs75524902 2639 dbSNP
rs753342522 2641 dbSNP
rs919311519 2648 dbSNP
rs1474991390 2652 dbSNP
rs933416694 2664 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55810.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gggAGUU--UUUCCUUCGUGAAa 5'
             |:||  ||||  ||||||| 
Target 5' ---UUAACUAAAG--AGCACUUu 3'
 		1 - 18
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000162391.3 | 3UTR | UUAACUAAAGAGCACUUUAUUUCUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells -0.452 1.5e-2 -0.234 1.4e-1 23 Click to see details
GSE27834 Pluripotent stem cells -0.429 4.9e-2 -0.453 3.9e-2 16 Click to see details
GSE28544 Breast cancer 0.334 5.5e-2 0.311 7.0e-2 24 Click to see details
GSE38226 Liver fibrosis -0.355 5.7e-2 -0.533 6.4e-3 21 Click to see details
GSE14794 Lymphoblastoid cells -0.152 7.6e-2 -0.100 1.7e-1 90 Click to see details
GSE21849 B cell lymphoma 0.212 1.3e-1 0.413 1.3e-2 29 Click to see details
GSE32688 Pancreatic cancer 0.19 1.5e-1 0.224 1.1e-1 32 Click to see details
GSE21687 Ependynoma primary tumors 0.11 1.9e-1 0.141 1.3e-1 64 Click to see details
GSE17306 Multiple myeloma 0.1 2.5e-1 0.141 1.7e-1 49 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.104 3.1e-1 0.134 2.6e-1 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.103 3.1e-1 0.095 3.3e-1 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.111 3.2e-1 -0.436 2.7e-2 20 Click to see details
GSE17498 Multiple myeloma 0.071 3.3e-1 0.134 2.0e-1 40 Click to see details
GSE26953 Aortic valvular endothelial cells -0.071 3.7e-1 -0.220 1.5e-1 24 Click to see details
GSE19350 CNS germ cell tumors 0.101 3.8e-1 0.119 3.6e-1 12 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.051 4.5e-1 -0.208 3.1e-1 8 Click to see details
GSE28260 Renal cortex and medulla 0.022 4.7e-1 0.401 8.7e-2 13 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
0.022 4.7e-1 0.401 8.7e-2 13 Click to see details
0.022 4.7e-1 0.401 8.7e-2 13 Click to see details
0.022 4.7e-1 0.401 8.7e-2 13 Click to see details
0.022 4.7e-1 0.401 8.7e-2 13 Click to see details
423 hsa-miR-520e Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006513 CD46 CD46 molecule 4 1
MIRT007338 PFKP phosphofructokinase, platelet 5 9
MIRT052929 MAP3K14 mitogen-activated protein kinase kinase kinase 14 3 1
MIRT052966 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 3 1
MIRT057396 TNKS2 tankyrase 2 2 2
MIRT061195 MED17 mediator complex subunit 17 2 2
MIRT061366 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT063068 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT064717 CCND2 cyclin D2 2 2
MIRT065871 GDF11 growth differentiation factor 11 2 2
MIRT066869 TMEM19 transmembrane protein 19 2 2
MIRT067243 FOXJ2 forkhead box J2 2 2
MIRT070853 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071388 CMPK1 cytidine/uridine monophosphate kinase 1 2 6
MIRT075787 KIAA0513 KIAA0513 2 6
MIRT077844 MINK1 misshapen like kinase 1 2 2
MIRT078824 UNK unkempt family zinc finger 2 2
MIRT079424 FOXK2 forkhead box K2 2 4
MIRT080190 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT083973 RAB22A RAB22A, member RAS oncogene family 2 4
MIRT084955 BACH1 BTB domain and CNC homolog 1 2 2
MIRT093815 KLF3 Kruppel like factor 3 2 2
MIRT093953 SLAIN2 SLAIN motif family member 2 2 2
MIRT108662 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT112100 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT122376 RGMB repulsive guidance molecule family member b 2 4
MIRT124139 GINS4 GINS complex subunit 4 2 4
MIRT130113 TXNIP thioredoxin interacting protein 2 8
MIRT138705 MPP5 membrane palmitoylated protein 5 2 2
MIRT147298 KPNA2 karyopherin subunit alpha 2 2 10
MIRT155916 SIK1 salt inducible kinase 1 2 2
MIRT165910 CREBRF CREB3 regulatory factor 2 2
MIRT173700 PRPF4 pre-mRNA processing factor 4 2 2
MIRT178673 FAM102B family with sequence similarity 102 member B 2 2
MIRT187262 DAZAP2 DAZ associated protein 2 2 10
MIRT199118 ZNF532 zinc finger protein 532 2 2
MIRT199293 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT200934 ZNF264 zinc finger protein 264 2 6
MIRT201032 ZNF805 zinc finger protein 805 2 2
MIRT213215 REST RE1 silencing transcription factor 2 6
MIRT216435 SERF1A small EDRK-rich factor 1A 2 2
MIRT216460 SERF1B small EDRK-rich factor 1B 2 2
MIRT242210 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT242366 IGF1R insulin like growth factor 1 receptor 2 2
MIRT242511 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 2
MIRT243435 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT244600 HOOK3 hook microtubule tethering protein 3 2 2
MIRT281001 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT302451 CLIP4 CAP-Gly domain containing linker protein family member 4 2 2
MIRT321784 FZD6 frizzled class receptor 6 2 8
MIRT322534 HMBOX1 homeobox containing 1 2 2
MIRT325522 PTPDC1 protein tyrosine phosphatase domain containing 1 2 2
MIRT356941 FEM1C fem-1 homolog C 2 8
MIRT383608 POU2F1 POU class 2 homeobox 1 2 2
MIRT441407 FAM9C family with sequence similarity 9 member C 2 2
MIRT442447 FGF7 fibroblast growth factor 7 2 6
MIRT443074 ABLIM1 actin binding LIM protein 1 2 2
MIRT444420 EMC1 ER membrane protein complex subunit 1 2 2
MIRT446616 HIP1 huntingtin interacting protein 1 2 4
MIRT446807 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT448351 TSR1 TSR1, ribosome maturation factor 2 6
MIRT448743 ITGA2 integrin subunit alpha 2 2 2
MIRT449158 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT449251 MICA MHC class I polypeptide-related sequence A 2 2
MIRT450842 IFFO1 intermediate filament family orphan 1 2 2
MIRT450927 CADM2 cell adhesion molecule 2 2 2
MIRT450963 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT461251 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 6
MIRT463601 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT467913 SLC22A23 solute carrier family 22 member 23 2 2
MIRT471996 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT473611 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT474724 KIF13A kinesin family member 13A 2 6
MIRT476988 FAM73B mitoguardin 2 2 2
MIRT477098 FAM160B1 family with sequence similarity 160 member B1 2 6
MIRT477269 ERGIC2 ERGIC and golgi 2 2 2
MIRT478732 CSNK1A1 casein kinase 1 alpha 1 2 6
MIRT479996 CAPRIN2 caprin family member 2 2 4
MIRT480660 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480836 BLCAP bladder cancer associated protein 2 10
MIRT481755 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT484830 ZNFX1 zinc finger NFX1-type containing 1 2 2
MIRT484929 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485347 MYO1D myosin ID 2 2
MIRT485831 ARID4B AT-rich interaction domain 4B 2 4
MIRT486013 LPAR2 lysophosphatidic acid receptor 2 2 2
MIRT493131 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT494082 DUSP2 dual specificity phosphatase 2 2 4
MIRT496048 MORC1 MORC family CW-type zinc finger 1 2 2
MIRT497456 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT498047 SNX5 sorting nexin 5 2 6
MIRT500881 SUCO SUN domain containing ossification factor 2 4
MIRT501398 RBBP6 RB binding protein 6, ubiquitin ligase 2 8
MIRT503790 ZNF12 zinc finger protein 12 2 6
MIRT504083 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT504278 PARP1 poly(ADP-ribose) polymerase 1 2 6
MIRT505169 YOD1 YOD1 deubiquitinase 2 4
MIRT505212 UBN2 ubinuclein 2 2 8
MIRT505985 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT506266 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT506975 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT507216 FZD9 frizzled class receptor 9 2 6
MIRT507422 ELK4 ELK4, ETS transcription factor 2 4
MIRT508560 CEP72 centrosomal protein 72 2 4
MIRT508729 ZNF682 zinc finger protein 682 2 4
MIRT508820 GPR155 G protein-coupled receptor 155 2 2
MIRT509114 BMP8B bone morphogenetic protein 8b 2 6
MIRT509421 MCM7 minichromosome maintenance complex component 7 2 6
MIRT509729 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT510013 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT510210 ZNF317 zinc finger protein 317 2 4
MIRT511304 KIAA1551 KIAA1551 2 2
MIRT511403 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT511540 HMGB1 high mobility group box 1 2 6
MIRT512023 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT512967 PPP1R14C protein phosphatase 1 regulatory inhibitor subunit 14C 2 4
MIRT513811 NFIB nuclear factor I B 2 2
MIRT514121 SERF2 small EDRK-rich factor 2 2 2
MIRT514304 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514466 FANCA Fanconi anemia complementation group A 2 2
MIRT515189 CRCP CGRP receptor component 2 2
MIRT515559 TMEM134 transmembrane protein 134 2 2
MIRT515916 MFAP2 microfibril associated protein 2 2 4
MIRT516044 MED18 mediator complex subunit 18 2 2
MIRT516355 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516543 MIXL1 Mix paired-like homeobox 2 2
MIRT516783 PTRF caveolae associated protein 1 2 4
MIRT517004 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT517171 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517244 PRIM1 DNA primase subunit 1 2 4
MIRT518301 ZNF514 zinc finger protein 514 2 4
MIRT518452 KIF6 kinesin family member 6 2 2
MIRT518683 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT518788 MED16 mediator complex subunit 16 2 4
MIRT518847 NEK8 NIMA related kinase 8 2 2
MIRT518956 GRK7 G protein-coupled receptor kinase 7 2 2
MIRT519256 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT519416 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519532 TMEM38A transmembrane protein 38A 2 2
MIRT520066 YIPF4 Yip1 domain family member 4 2 2
MIRT520140 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT520294 UBXN2A UBX domain protein 2A 2 2
MIRT520557 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT520818 TAOK1 TAO kinase 1 2 2
MIRT520994 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521224 SBNO1 strawberry notch homolog 1 2 2
MIRT521533 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522156 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522206 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT522517 MFN1 mitofusin 1 2 2
MIRT522954 IPO9 importin 9 2 2
MIRT523067 HYPK huntingtin interacting protein K 2 2
MIRT523424 GPR157 G protein-coupled receptor 157 2 4
MIRT523555 GIGYF1 GRB10 interacting GYF protein 1 2 6
MIRT523638 FOXK1 forkhead box K1 2 4
MIRT524236 DCTN6 dynactin subunit 6 2 2
MIRT524279 CYCS cytochrome c, somatic 2 2
MIRT524378 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524441 CNKSR3 CNKSR family member 3 2 2
MIRT524758 BCL2L2 BCL2 like 2 2 2
MIRT524967 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT525651 NHSL2 NHS like 2 2 2
MIRT525687 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526623 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT527536 DLGAP5 DLG associated protein 5 2 4
MIRT529523 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT529987 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT530134 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 2 2
MIRT530575 ABHD15 abhydrolase domain containing 15 2 2
MIRT530973 EXO5 exonuclease 5 2 4
MIRT531464 TNFRSF10B TNF receptor superfamily member 10b 2 4
MIRT531763 TXK TXK tyrosine kinase 2 4
MIRT532037 FHDC1 FH2 domain containing 1 2 2
MIRT532932 ZNF385A zinc finger protein 385A 2 2
MIRT534519 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT534615 RNASEH1 ribonuclease H1 2 4
MIRT534773 RASGEF1A RasGEF domain family member 1A 2 2
MIRT535257 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 4
MIRT535389 PER1 period circadian clock 1 2 2
MIRT536024 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT536112 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT536172 MAP1B microtubule associated protein 1B 2 3
MIRT536295 LIMA1 LIM domain and actin binding 1 2 2
MIRT536357 LEFTY1 left-right determination factor 1 2 2
MIRT536425 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT536548 KCNJ8 potassium voltage-gated channel subfamily J member 8 2 2
MIRT536616 IRF2 interferon regulatory factor 2 2 2
MIRT536630 INO80D INO80 complex subunit D 2 2
MIRT536868 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 2 2
MIRT536954 HAS3 hyaluronan synthase 3 2 2
MIRT536981 HABP4 hyaluronan binding protein 4 2 4
MIRT537247 GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 2 2
MIRT537434 FBXL7 F-box and leucine rich repeat protein 7 2 2
MIRT537550 ETNK1 ethanolamine kinase 1 2 2
MIRT537745 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537960 DPYSL2 dihydropyrimidinase like 2 2 2
MIRT538003 DPP8 dipeptidyl peptidase 8 2 2
MIRT538258 CUL3 cullin 3 2 4
MIRT538513 CLCN3 chloride voltage-gated channel 3 2 2
MIRT538583 CECR2 CECR2, histone acetyl-lysine reader 2 2
MIRT538647 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT538860 BTG1 BTG anti-proliferation factor 1 2 2
MIRT538911 BRI3BP BRI3 binding protein 2 2
MIRT539011 AVL9 AVL9 cell migration associated 2 2
MIRT539058 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 4
MIRT539102 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT539437 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT540262 FAM89A family with sequence similarity 89 member A 2 2
MIRT540376 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT541293 GLO1 glyoxalase I 2 2
MIRT542129 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT542255 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT546546 SATB2 SATB homeobox 2 2 2
MIRT547480 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547639 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT547880 HSPA13 heat shock protein family A (Hsp70) member 13 2 2
MIRT548567 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 2 2
MIRT550865 SNAP47 synaptosome associated protein 47 2 4
MIRT552161 DAD1 defender against cell death 1 2 2
MIRT552191 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT553584 TMEM100 transmembrane protein 100 2 2
MIRT553680 TFAP4 transcription factor AP-4 2 4
MIRT554438 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554496 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT554758 RHOC ras homolog family member C 2 2
MIRT555452 POLR3A RNA polymerase III subunit A 2 2
MIRT556536 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT557069 HOXB3 homeobox B3 2 2
MIRT557649 GATA6 GATA binding protein 6 2 2
MIRT560236 KLHL21 kelch like family member 21 2 4
MIRT561335 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT566274 PRRG4 proline rich and Gla domain 4 2 2
MIRT567080 KBTBD2 kelch repeat and BTB domain containing 2 2 2
MIRT567939 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT567980 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT568167 CCDC6 coiled-coil domain containing 6 2 2
MIRT571711 RPL17-C18orf32 RPL17-C18orf32 readthrough 2 2
MIRT571762 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT572197 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT572664 AGMAT agmatinase 2 4
MIRT573696 RBM12B RNA binding motif protein 12B 2 2
MIRT574574 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT574731 HAUS8 HAUS augmin like complex subunit 8 2 2
MIRT575713 Map1b microtubule-associated protein 1B 2 3
MIRT608736 MYH9 myosin heavy chain 9 2 2
MIRT612599 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614251 WDR53 WD repeat domain 53 2 4
MIRT615164 SPIB Spi-B transcription factor 2 2
MIRT616160 TCEB1 elongin C 2 2
MIRT616799 FEM1A fem-1 homolog A 2 2
MIRT617866 ESR1 estrogen receptor 1 2 2
MIRT619829 POLM DNA polymerase mu 2 4
MIRT620966 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT625853 SLC35C2 solute carrier family 35 member C2 2 2
MIRT626209 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626918 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT633110 CBX5 chromobox 5 2 2
MIRT634086 APOH apolipoprotein H 2 2
MIRT634943 GTF2H2C GTF2H2 family member C 2 4
MIRT640022 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT641694 SPCS1 signal peptidase complex subunit 1 2 2
MIRT645203 POLR3F RNA polymerase III subunit F 2 2
MIRT656319 MELK maternal embryonic leucine zipper kinase 2 2
MIRT659545 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT662395 ICA1L islet cell autoantigen 1 like 2 4
MIRT663613 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT663940 ZNF554 zinc finger protein 554 2 2
MIRT664216 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664382 CYB5A cytochrome b5 type A 2 2
MIRT673122 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT677143 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT677249 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT678736 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679721 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT680362 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680689 ZNF785 zinc finger protein 785 2 2
MIRT680767 WDR73 WD repeat domain 73 2 2
MIRT681399 RMND1 required for meiotic nuclear division 1 homolog 2 2
MIRT681693 ABI2 abl interactor 2 2 2
MIRT681829 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT682320 RAB42 RAB42, member RAS oncogene family 2 2
MIRT683318 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683388 ESR2 estrogen receptor 2 2 2
MIRT683492 ZNF7 zinc finger protein 7 2 2
MIRT683524 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683875 OCIAD1 OCIA domain containing 1 2 2
MIRT683948 MYLK3 myosin light chain kinase 3 2 2
MIRT683977 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT684080 TLR7 toll like receptor 7 2 2
MIRT684133 CEP104 centrosomal protein 104 2 2
MIRT684197 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT684358 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT684492 GPR137B G protein-coupled receptor 137B 2 2
MIRT684574 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684617 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684648 PDE4C phosphodiesterase 4C 2 2
MIRT684713 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684742 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684787 MYO1F myosin IF 2 2
MIRT684919 CD28 CD28 molecule 2 2
MIRT685195 DCTN5 dynactin subunit 5 2 2
MIRT685248 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685316 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685351 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685519 MSH3 mutS homolog 3 2 2
MIRT685578 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685635 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685660 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685709 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685742 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685783 ZNF426 zinc finger protein 426 2 2
MIRT685883 RTN2 reticulon 2 2 2
MIRT685955 PTGIS prostaglandin I2 synthase 2 2
MIRT686106 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686156 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686283 WWC1 WW and C2 domain containing 1 2 2
MIRT686321 VPS53 VPS53, GARP complex subunit 2 2
MIRT686362 USP15 ubiquitin specific peptidase 15 2 2
MIRT686390 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686444 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686491 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686527 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686582 TMOD3 tropomodulin 3 2 2
MIRT686693 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686827 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686880 SLC1A5 solute carrier family 1 member 5 2 2
MIRT686914 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT686980 SERINC1 serine incorporator 1 2 2
MIRT687044 RNF115 ring finger protein 115 2 2
MIRT687079 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687254 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687596 MANEAL mannosidase endo-alpha like 2 2
MIRT687650 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687858 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687983 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688123 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688217 FKBP14 FK506 binding protein 14 2 2
MIRT688275 FAM213A family with sequence similarity 213 member A 2 2
MIRT688487 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688506 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688830 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689174 ZNF665 zinc finger protein 665 2 2
MIRT689799 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689844 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690739 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690984 ZNF578 zinc finger protein 578 2 2
MIRT691076 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691333 KIAA1841 KIAA1841 2 2
MIRT691497 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691578 CCDC125 coiled-coil domain containing 125 2 2
MIRT691614 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692074 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692111 CXorf38 chromosome X open reading frame 38 2 4
MIRT692212 NOL9 nucleolar protein 9 2 2
MIRT692320 RFK riboflavin kinase 2 2
MIRT692382 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692443 METTL8 methyltransferase like 8 2 2
MIRT692478 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692546 PARD3 par-3 family cell polarity regulator 2 2
MIRT692607 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692788 SYNPO2L synaptopodin 2 like 2 2
MIRT692819 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692881 RBM41 RNA binding motif protein 41 2 2
MIRT692991 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693140 THEM4 thioesterase superfamily member 4 2 2
MIRT693353 RNF34 ring finger protein 34 2 2
MIRT694113 ZNF446 zinc finger protein 446 2 2
MIRT694197 ZNF347 zinc finger protein 347 2 2
MIRT694663 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694817 STX4 syntaxin 4 2 2
MIRT694939 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695183 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695309 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT695663 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695836 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695928 ZNF174 zinc finger protein 174 2 2
MIRT695975 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696186 GNB5 G protein subunit beta 5 2 2
MIRT696447 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696863 UBOX5 U-box domain containing 5 2 2
MIRT696910 C14orf105 coiled-coil domain containing 198 2 2
MIRT697249 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697394 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697988 TSPAN6 tetraspanin 6 2 2
MIRT698334 TMEM127 transmembrane protein 127 2 2
MIRT699274 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699321 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699637 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699699 SF3B3 splicing factor 3b subunit 3 2 2
MIRT700048 RPL14 ribosomal protein L14 2 2
MIRT700106 RNF19B ring finger protein 19B 2 2
MIRT701114 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701298 NUDT3 nudix hydrolase 3 2 2
MIRT701579 MYPN myopalladin 2 2
MIRT702529 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT703095 GPRIN3 GPRIN family member 3 2 2
MIRT704114 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704149 DNAL1 dynein axonemal light chain 1 2 2
MIRT704201 LDHD lactate dehydrogenase D 2 2
MIRT704466 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704767 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705088 C4orf29 abhydrolase domain containing 18 2 2
MIRT705353 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706109 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706280 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706315 CCDC30 coiled-coil domain containing 30 2 2
MIRT706355 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706407 HAS2 hyaluronan synthase 2 2 2
MIRT706438 LIAS lipoic acid synthetase 2 2
MIRT706518 MTMR9 myotubularin related protein 9 2 2
MIRT707592 PCNXL2 pecanex homolog 2 2 2
MIRT708374 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708452 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT709076 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709541 ZBED1 zinc finger BED-type containing 1 2 2
MIRT709623 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT714310 ZNF454 zinc finger protein 454 2 2
MIRT715601 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT716544 GOLGA2 golgin A2 2 2
MIRT717807 FAM114A1 family with sequence similarity 114 member A1 2 2
MIRT719076 ACOX1 acyl-CoA oxidase 1 2 2
MIRT732364 ZBTB7A zinc finger and BTB domain containing 7A 3 1
MIRT734579 MTDH metadherin 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-520e Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-520e Cisplatin approved 84093 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-520e Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-520e Androstenedione+Anastrozole resistant cell line (MCF-7)

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