miRTarBase - #MIRT068541


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pre-miRNA Information
pre-miRNA hsa-mir-3529   
Genomic Coordinates chr15: 88611847 - 88611924
Description Homo sapiens miR-3529 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3529-5p
Sequence 10| AGGUAGACUGGGAUUUGUUGUU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs747160976 1 dbSNP
rs777738449 2 dbSNP
rs1421978871 4 dbSNP
rs1167726772 6 dbSNP
rs1355306872 6 dbSNP
rs1286285953 7 dbSNP
rs1233166293 8 dbSNP
rs772151253 9 dbSNP
rs1204890571 13 dbSNP
rs1250455629 18 dbSNP
rs748388180 19 dbSNP
rs1303070972 21 dbSNP
Putative Targets

Gene Information
Gene Symbol NHLRC3   
Synonyms -
Description NHL repeat containing 3
Transcript NM_001012754   
Other Transcripts NM_001017370   
Expression
Putative miRNA Targets on NHLRC3
3'UTR of NHLRC3
(miRNA target sites are highlighted)		 
>NHLRC3|NM_001012754|3'UTR
   1 TGTTTCTTTCCTGGGAATATTTCAAGTGGCAGTTCAGATTCTCAATTCACTAAGTGCTTAAAAATGATGTTCAAGCACAA
  81 GAATTTATTTTTCTAGTATAAAAGATCTAGTATCAGAAAGATTTGTTTTTGTATCATTAAGAATCTTATATTTTGTTGCC
 161 CTCTTGGGACTTAGTTTTATTTGTAAGTGCATAAGGATATTTTAATGAAAGGAAAGTAACTAAAAAATGGGGTTGGGAAG
 241 AGGGACTAAGGTGGTAACCTCATTATTTGCCCTGGTAGACTGATTCTCCCTGGGTAAAAAAAATGGGAATAAAAATGAGC
 321 TTGCATGATAATTTATTAAATTTCATGTGAAGAACTCCAGACCTCCAGATTGTGCAACTAACATAAAATGAGCTGCTTGA
 401 GAGATTGTAAATAAGATGAACTATTGATTAATTTGAGTACCCACAGAGTGCTGTGTCTTGACGACTTAAAAATGAAAAAG
 481 CAGGATTGCCTTTTGAGTAGCTTGCAGTCTAGTGGGGAGACAAGCAGGCAAACAGTCACAACACAGCAAAAGCGACCTTG
 561 GAGCATAGTGGGACTTTTGGAGTAGGAGTGCTGCATTTGACTGAGGGAATCATGGATACTTCGCAGGAGAAGTGAATTTG
 641 AGCTCAGACTTGAAAACTGAGGAGGAGCTTACCAAGGGACAAGGAGGAGAAAACAATAATTTCCAAGTAAAGAAGGTATA
 721 AAAAGTTAGAAGTGTACTGTAAACTTTGATAGGCTTTTAGGCCTTTTTTAAAGCCCAACTTGGCTTCTGTCCATTACCTA
 801 TAAGATATTTAATGTCAGTCAGCCTTTAAATGTAGGAATAAAATGGCTGGCATCTAAGCACTTTAGTAAAAGAGGTTTTT
 881 ACAAATAACTAAGGATTGTAGAGCTTCCTTCTCTTTTTTTTTCTTTTTCTTTCTTTTGTTTTACATGAACTCAACTTATT
 961 CCTAACATTTGTCTACCTCAAAGAAATTTCAAGATTATTTAGATAACATGGATATGTGCCAAATCCTTTGAGCTGTTAAG
1041 ATGATAATTTCCTGCTTTCCTCCTACATCTTCTCCTCCCACTCCCTCCTTTGGTGTGAATATTGGCTTCCCAATTAAGAC
1121 CTTTTTTTTTTTTTTTCCAGTTTGTTTTAGCTTATTATAGGTTTTGGAGGAACTTTGCCATTTTGTAATCTTTCAAATCA
1201 TTCTTCACCCTTCCTCACATCAGCTTCCTGCTTTTCCCAGTGTTTTACTGTAAATTGTGTAGCATATGACAAATCTTGAG
1281 CTGACTTTCCTCTTCACCTGTTATGGCTGGAGTATTTTCCAGACCTGAAGGGACTCACACTTGTTTTGATACTTGGATCA
1361 CATCTCCGTGAGGTTAGGAAGGTAAATCTACCAACAGGAAGCCCTGTACTCTGTATTCCAAGGCCATTGGTAAATGTGTT
1441 GGTGCCACTGATCGGACTGTATGACCTTAAACAAGTCACCTTAGTTTTCAGTGAAATGGGAATATCATTGTCTCCTCTTT
1521 CATGAATGCTGTGAGAATCAGATGTGCAACAGGTACAGACTTGCCCTTTGAAATCTATACCTCTGGATACATTAGAGGCA
1601 TTTTATTAACAAAGGCCCTTCTAAATGTGCTATTTATTTGACAATAACTATCAGATTTGCCTTAATTTTGTGTTTATAGC
1681 ATTTATCAAAACGTATCCTCATAGACTTTATGCAGATTAATATGGTCAATTGATTTGGATAAAAGAAAGTAATTTCAGGG
1761 TTTGTTTTTAAGCCAGGACAAGAAGTGCAAATGCCTCTTTGAAGCAATTTAGGCTAAACTGATTTTGAAATTTCAAAATG
1841 TTTTATTTTACTTTGTTTTATTAAGCCAGGACAAGAAGTGCAAATGCCTCTTTGAAGCAATTCAGGCTAGGTAAACCGAT
1921 TTTGCCATTTCAAAACGTTTTATTTTACTTTGTTTTATATCAGAGTCTTATAAAACCTGCTGCAAATATTTCTGAATGTC
2001 TTTGTAAAAGTGTTTGTTAGTGTACCTGTGATTATAGTACTTCACTTTTTTCCTTTGGATTAATTGGTTAAATGAATGAG
2081 AAATGTGTTATGTTTTTTACTAAAAAGTATAAATTAAAATTTTGGAAAGAAAAGGCAATATTATCTGGCTCCCCAATTAA
2161 AGTTTGATTTTATTGTCACAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuGUUGUUUAGG----GU---CAGAUGGa 5'
            ||||  ||:|    ||   ||||||| 
Target 5' ctCAACTTATTCCTAACATTTGTCTACCt 3'
 950 - 978 154.00 -19.50
2 
miRNA  3' uugUUGUUUAGGGUCAGAUgga 5'
             |::|: |: |||||||   
Target 5' ttgAGTAGCTTGCAGTCTAgtg 3'
 493 - 514 123.00 -10.80
3 
miRNA  3' uuguuguuuagggucAGAUGGa 5'
                         |||||| 
Target 5' ggttaggaaggtaaaTCTACCa 3'
 1372 - 1393 120.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30130376 7 COSMIC
COSN6624144 13 COSMIC
COSN30523976 38 COSMIC
COSN30487796 42 COSMIC
COSN26986489 59 COSMIC
COSN31495859 73 COSMIC
COSN31601738 76 COSMIC
COSN30120464