miRTarBase - #MIRT069438


—
pre-miRNA Information
pre-miRNA hsa-mir-548c   
Genomic Coordinates chr12: 64622509 - 64622605
Description Homo sapiens miR-548c stem-loop
Comment Extensive cloning studies suggest that the 5' miRNA may be the predominant one .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-548c-3p
Sequence 61| CAAAAAUCUCAAUUACUUUUGC |82
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23013696 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396767933 3 dbSNP
rs1314622460 7 dbSNP
rs1226739912 9 dbSNP
rs780547012 11 dbSNP
rs747421587 12 dbSNP
rs1298302643 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CDCA4   
Synonyms HEPP, SEI-3/HEPP
Description cell division cycle associated 4
Transcript NM_017955   
Other Transcripts NM_145701   
Expression
Putative miRNA Targets on CDCA4
3'UTR of CDCA4
(miRNA target sites are highlighted)		 
>CDCA4|NM_017955|3'UTR
   1 GCAGGAGCCCTGAGTGCTCACAGCCGCCTCTGACGCATTGACACGTGAGCACTGGCTCCCACGGAGGGTGCGCCTGCCGC
  81 CAGCGGCCCAGCCTTGCTGCCCTGTCTGCTGATTCTGAGAAATCCCAGAACAGCCCATTACCAGTGGGGCTGCAGCCCTA
 161 GGCCCGTCCCACTCACCTCCCCCCTGTGGAGCGCCAGGCAGAGGCTGTTCTGGAAGGCTTCTTGTCTTCTGACGTCCCCA
 241 CAGCCCTGGGCCCCTCGTGTCTCTTTGTGTCCCCCACTGTAGAGGACGGTGAGCCGCAGCTGCATCAACCTCCTTTTACC
 321 TTTAGATAGGTGAATTTTTACAATTCAGTTTTACATGTTTTGGGCAGTATTTTGTCTTAAGATATATTTTTTAAACTTTT
 401 TATACCTTATCTCTTTAGATTTTTTCAGCTATTTTCTTAAAAGTATATTTTTTCTATAAACATCCTTTGCTGCTACATTA
 481 GAACTTTTATAGCCTAAACAATTGCAGTTGGTGTGTTTCATTTTTTTAAGGTTTAAATAAGGGTTTTTTGTTTTGTTTTG
 561 TTTTTTGCAGTGAGCATCACTACAGTCTCAGTCAACAGTGTGAATGTATCATGTTTTACTTTAAATGTGTGTGTGATACT
 641 TCTTCATTATGTCCTGCGCTGCAGTGAGACCTGGGTGAAAATCAGGAGCCGCACACAGCCACATCTTCCTAGACCTAAGA
 721 GTAAATTATGGAGGATTTTATTTATGTCTATTTATATGTAAATGTCATTGAAGACAAAGGTCAAATATTTGTCTGTTTGT
 801 AGATCACAGGCACCAGTTGGTCTTCAGGGACCTCATAGCCCCTCGGTGGTGCCTTCTCAAGGCAGTGTTCCTGGAGGCTC
 881 CCATCAGGGTCAGCCCATGCACCTGCCCTGGGTGAGGAAGTAGCATTGCTGCTGGATGAGAAACGCCTGCGCTGCTCTGT
 961 TAGACTGGTGCTGAAACAAAAGGTTAAGGCTAGGTTGAAGTCTAGAATGAAAGAAATCTGAATCCATGTCATTCATAACC
1041 CCTTGATCTGTAGTGTCATGGGTGCTGCCGCAGGCAGGGAGTGAGCTGGGGGTGCCTGCAGCCTTCCACTCCTGCCCCGC
1121 CTCACCCCACATGCTCCCTGTTTCTCATGCTTTCTCTAACTTCCTCACCCCTTAACCAAAAAGGTGTGTTTTCTTTTGTG
1201 CATATAGCCATTCTTAAATATCAGTGATGTAAACCTCACTTTATTAAAAAATTATCCAGCAAACAAAATGGGAATGTGGT
1281 GTTAGTTACGACCACGGCCTGACCCTCCAGCAACCTTTCTGCAGGATCAGTTCTGCTGTATTATCTGGTGGTGCTTTCTA
1361 AGGTGGGGAAAGGAATTGCACTTGGCTGCATTAAATGGACGCTGGGTTACTTTTATTTCCCCCCCCCACAGGGTTGCAGA
1441 GCAAATTCTTTTTACATTGTTCAGCGCCCGGCTGGAGTTGGGGGTGTCCACGACCTCTGACAGCCCCCGATGTCGAAAGT
1521 TAATCCTCATGGACCCTAGTTTAAAGGGTATGTGTTTTATAGGAATAAATCTAAAGCACTATTTTGTTTCTGTATAGCAT
1601 TTTTATCTTTTAGAAACATCATTTGTTCAGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUUUUCA-UUAA---CU-CUAAAAac 5'
            ||:||| ||||   || ||||||  
Target 5' ctAAGAGTAAATTATGGAGGATTTTat 3'
 715 - 741 148.00 -7.90
2 
miRNA  3' cgUUUUCAUUAA---CU--CUAAAAAc 5'
            |:|:|  :||   ||  | || || 
Target 5' gcAGAGGCTGTTCTGGAAGGCTTCTTg 3'
 198 - 224 86.00 -6.80
3 
miRNA  3' cgUUUUCAU--UAAC-----UCUAaaaac 5'
            ::|||||  ||||     :|||     
Target 5' gaGGAAGTAGCATTGCTGCTGGATgagaa 3'
 914 - 942 82.00 -8.14
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31957950 7 COSMIC
COSN31490513 19 COSMIC
COSN31595410 47 COSMIC
COSN20077974 125 COSMIC
COSN24206927 183 COSMIC
COSN8822655 346 COSMIC
COSN31528560 381 COSMIC
COSN31483504 387 COSMIC
COSN31568312 436 COSMIC
COSN31606625 481 COSMIC
COSN30168298 519 COSMIC
COSN30541108 549 COSMIC
COSN28627582 858 COSMIC
COSN20111772 870 COSMIC
COSN16132295 908 COSMIC
COSN31592676 950 COSMIC
COSN30545319 1018 COSMIC
COSN31528568 1026 COSMIC
COSN21507148 1289 COSMIC
COSN8139853 1327 COSMIC
COSN20111768 1419 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1474009417 3 dbSNP
rs780214147 4 dbSNP
rs756536228 5 dbSNP
rs750914995 7 dbSNP
rs1384883486 8 dbSNP
rs879187818 9 dbSNP
rs768060971 11 dbSNP
rs757295904 12 dbSNP
rs1331485231 16 dbSNP
rs751554074 19 dbSNP
rs764258674 25 dbSNP
rs182286629 26 dbSNP
rs775788833 27 dbSNP
rs1219784061 31 dbSNP
rs989959277 32 dbSNP
rs7144401 34 dbSNP
rs760607947 35 dbSNP
rs773265032 43 dbSNP
rs547608078 44 dbSNP
rs761861164 45 dbSNP
rs527910747 47 dbSNP
rs768213620 49 dbSNP
rs1381611292 56 dbSNP
rs1347277337 59 dbSNP
rs539069805 63 dbSNP
rs1299178869 65 dbSNP
rs548907771 67 dbSNP
rs998776989 71 dbSNP
rs528833536 72 dbSNP
rs1280006585 78 dbSNP
rs570416062 79 dbSNP
rs1202197444 80 dbSNP
rs1242859177 82 dbSNP
rs1030252092 84 dbSNP
rs774027690 85 dbSNP
rs997568633 86 dbSNP
rs900569504 91 dbSNP
rs1039074140 93 dbSNP
rs770454069 99 dbSNP
rs1358316153 100 dbSNP
rs1334457443 111 dbSNP
rs749696134 116 dbSNP
rs1435532710 126 dbSNP
rs1322199020 131 dbSNP
rs1226104814 134 dbSNP
rs1274876147 148 dbSNP
rs1347772739 149 dbSNP
rs1299975268 156 dbSNP
rs1420180198 165 dbSNP
rs147341834 166 dbSNP
rs1465677392 168 dbSNP
rs35300947 171 dbSNP
rs929534439 172 dbSNP
rs142710447 183 dbSNP
rs1481378355 186 dbSNP
rs762150612 187 dbSNP
rs372956387 189 dbSNP
rs10131315 192 dbSNP
rs533847771 198 dbSNP
rs1381249180 204 dbSNP
rs1323652692 206 dbSNP
rs541210751 210 dbSNP
rs1477055810 233 dbSNP
rs1265738151 234 dbSNP
rs1283263736 238 dbSNP
rs1330388347 250 dbSNP
rs1230657817 254 dbSNP
rs957469389 256 dbSNP
rs192042242 257 dbSNP
rs572311132 259 dbSNP
rs1269729226 261 dbSNP
rs560987283 267 dbSNP
rs769120614 267 dbSNP
rs555695797 269 dbSNP
rs1472851913 274 dbSNP
rs748662077 287 dbSNP
rs1361782747 288 dbSNP
rs1452784655 294 dbSNP
rs955285772 295 dbSNP
rs1367027173 296 dbSNP
rs535744255 300 dbSNP
rs997494904 304 dbSNP
rs900495461 308 dbSNP
rs1017674434 311 dbSNP
rs1373344088 315 dbSNP
rs1305312874 318 dbSNP
rs1335609766 320 dbSNP
rs1245966645 322 dbSNP
rs1006303155 330 dbSNP
rs1357508101 337 dbSNP
rs1345801165 342 dbSNP
rs138703543 354 dbSNP
rs1225442645 355 dbSNP
rs1275371942 357 dbSNP
rs34252654 361 dbSNP
rs1248313771 362 dbSNP
rs1418334734 385 dbSNP
rs1187962745 387 dbSNP
rs1047856840 391 dbSNP
rs1422309414 393 dbSNP
rs929562396 395 dbSNP
rs371705717 396 dbSNP
rs1400359153 413 dbSNP
rs1370562051 419 dbSNP
rs539521443 421 dbSNP
rs1463063693 426 dbSNP
rs907431465 434 dbSNP
rs1332111511 436 dbSNP
rs570592653 450 dbSNP
rs1397012373 453 dbSNP
rs1317556973 454 dbSNP
rs1380877706 456 dbSNP
rs777866055 460 dbSNP
rs150531784 461 dbSNP
rs1415689524 473 dbSNP
rs1045997503 475 dbSNP
rs780353783 477 dbSNP
rs1166990166 488 dbSNP
rs948397327 490 dbSNP
rs1249587467 496 dbSNP
rs531912931 502 dbSNP
rs1244684850 504 dbSNP
rs1194904411 511 dbSNP
rs1442396228 537 dbSNP
rs1182668081 541 dbSNP
rs534119372 543 dbSNP
rs1167658904 550 dbSNP
rs745420532 550 dbSNP
rs199789276 555 dbSNP
rs1466955604 558 dbSNP
rs568364703 561 dbSNP
rs1272314823 563 dbSNP
rs1321525156 565 dbSNP
rs1452357986 565 dbSNP
rs922548417 565 dbSNP
rs145879272 567 dbSNP
rs1258937640 569 dbSNP
rs367915246 570 dbSNP
rs1212914840 574 dbSNP
rs75543247 576 dbSNP
rs1306860310 583 dbSNP
rs78187215 586 dbSNP
rs1006724971 587 dbSNP
rs554227927 589 dbSNP
rs1202767608 590 dbSNP
rs1248299956 597 dbSNP
rs1486619004 598 dbSNP
rs763808464 600 dbSNP
rs1418085821 610 dbSNP
rs1433266251 611 dbSNP
rs1179287589 615 dbSNP
rs952133660 633 dbSNP
rs1026918765 634 dbSNP
rs1160313985 641 dbSNP
rs1347204211 642 dbSNP
rs1288365372 646 dbSNP
rs1428821597 646 dbSNP
rs1368481342 655 dbSNP
rs1406830924 656 dbSNP
rs1443914936 656 dbSNP
rs549726241 657 dbSNP
rs553852743 658 dbSNP
rs1284630555 672 dbSNP
rs3204172 688 dbSNP
rs1213297314 689 dbSNP
rs541174068 690 dbSNP
rs1411998532 691 dbSNP
rs752663498 694 dbSNP
rs1165531075 705 dbSNP
rs1480369269 709 dbSNP
rs1183368983 714 dbSNP
rs1410533022 714 dbSNP
rs1399317313 719 dbSNP
rs1158726996 732 dbSNP
rs1350660274 753 dbSNP
rs1426664199 758 dbSNP
rs1473388943 765 dbSNP
rs1301325512 776 dbSNP
rs1343587624 787 dbSNP
rs766980847 789 dbSNP
rs907357876 791 dbSNP
rs878865341 795 dbSNP
rs759121130 797 dbSNP
rs1176915285 801 dbSNP
rs754705233 810 dbSNP
rs1221840604 817 dbSNP
rs1283169712 818 dbSNP
rs1459141392 825 dbSNP
rs572224823 826 dbSNP
rs894151455 828 dbSNP
rs1288889364 831 dbSNP
rs1490330560 837 dbSNP
rs1183248698 838 dbSNP
rs561929473 839 dbSNP
rs1235087591 841 dbSNP
rs1468969332 844 dbSNP
rs1309816866 845 dbSNP
rs770632710 848 dbSNP
rs1054095668 849 dbSNP
rs935764885 857 dbSNP
rs1365111576 858 dbSNP
rs35398729 872 dbSNP
rs1041843431 882 dbSNP
rs3204173 883 dbSNP
rs1439793375 885 dbSNP
rs773780496 886 dbSNP
rs1383090630 887 dbSNP
rs1247630353 897 dbSNP
rs1357032291 899 dbSNP
rs770271144 904 dbSNP
rs933858371 905 dbSNP
rs1308423332 914 dbSNP
rs1237405954 928 dbSNP
rs1195848200 935 dbSNP
rs1378386983 936 dbSNP
rs1331625275 939 dbSNP
rs1436532814 942 dbSNP
rs922435224 944 dbSNP
rs1244062146 945 dbSNP
rs1439642928 947 dbSNP
rs368492638 950 dbSNP
rs1182043831 951 dbSNP
rs1384825746 956 dbSNP
rs374533227 960 dbSNP
rs1475807960 962 dbSNP
rs1325992738 964 dbSNP
rs1421595638 968 dbSNP
rs963895085 989 dbSNP
rs1407980543 992 dbSNP
rs1406628944 999 dbSNP
rs757863353 1016 dbSNP
rs1157313308 1017 dbSNP
rs1381546530 1019 dbSNP
rs556215126 1033 dbSNP
rs910565052 1039 dbSNP
rs539434200 1048 dbSNP
rs1193279242 1050 dbSNP
rs1264293043 1057 dbSNP
rs748714989 1058 dbSNP
rs1242801431 1060 dbSNP
rs576869829 1061 dbSNP
rs952124377 1061 dbSNP
rs1026428753 1069 dbSNP
rs1223573475 1070 dbSNP
rs1240364983 1070 dbSNP
rs749872971 1072 dbSNP
rs993982047 1075 dbSNP
rs971597505 1083 dbSNP
rs1285221552 1091 dbSNP
rs1214282535 1093 dbSNP
rs1355255204 1094 dbSNP
rs1173933478 1095 dbSNP
rs1309303728 1106 dbSNP
rs1382379221 1107 dbSNP
rs981992139 1108 dbSNP
rs553849247 1116 dbSNP
rs1024443064 1118 dbSNP
rs1284533536 1119 dbSNP
rs1276245224 1132 dbSNP
rs1013183597 1143 dbSNP
rs185742659 1146 dbSNP
rs1437635827 1147 dbSNP
rs894704113 1156 dbSNP
rs1207188502 1157 dbSNP
rs1360226977 1158 dbSNP
rs1055096880 1176 dbSNP
rs1200193751 1177 dbSNP
rs765802708 1184 dbSNP
rs769003045 1186 dbSNP
rs528481170 1190 dbSNP
rs1197025260 1195 dbSNP
rs1376786580 1196 dbSNP
rs902837416 1200 dbSNP
rs747134004 1202 dbSNP
rs777031277 1204 dbSNP
rs1361701727 1213 dbSNP
rs1418601205 1223 dbSNP
rs1303183411 1227 dbSNP
rs370909400 1229 dbSNP
rs1431502454 1234 dbSNP
rs1427603663 1235 dbSNP
rs1283202098 1252 dbSNP
rs1336782350 1259 dbSNP
rs1191919167 1267 dbSNP
rs1041506149 1272 dbSNP
rs1478239724 1279 dbSNP
rs1049385073 1282 dbSNP
rs1293964322 1289 dbSNP
rs199717135 1289 dbSNP
rs538927940 1289 dbSNP
rs758621914 1290 dbSNP
rs555164640 1295 dbSNP
rs1489252812 1296 dbSNP
rs1183676356 1297 dbSNP
rs1361732883 1303 dbSNP
rs1438632077 1310 dbSNP
rs777599020 1313 dbSNP
rs935492604 1316 dbSNP
rs909824426 1320 dbSNP
rs1366972062 1325 dbSNP
rs764336778 1336 dbSNP
rs984432692 1337 dbSNP
rs538082895 1343 dbSNP
rs12891636 1344 dbSNP
rs1397796220 1350 dbSNP
rs755877636 1355 dbSNP
rs1179191064 1358 dbSNP
rs982172397 1369 dbSNP
rs1376451160 1381 dbSNP
rs752397706 1384 dbSNP
rs1246895778 1386 dbSNP
rs971611290 1390 dbSNP
rs114742941 1394 dbSNP
rs1357444928 1395 dbSNP
rs552634982 1398 dbSNP
rs1264829002 1399 dbSNP
rs972147261 1400 dbSNP
rs971440356 1401 dbSNP
rs1024493778 1404 dbSNP
rs952774831 1406 dbSNP
rs370427729 1416 dbSNP
rs1386681729 1417 dbSNP
rs1026902037 1418 dbSNP
rs1163413686 1419 dbSNP
rs200588118 1419 dbSNP
rs994431102 1421 dbSNP
rs1276747184 1422 dbSNP
rs896975352 1424 dbSNP
rs1019839017 1425 dbSNP
rs532954014 1426 dbSNP
rs377617161 1427 dbSNP
rs11314009 1428 dbSNP
rs1459662561 1428 dbSNP
rs367552433 1428 dbSNP
rs58203562 1428 dbSNP
rs869129381 1428 dbSNP
rs902849463 1428 dbSNP
rs547475463 1430 dbSNP
rs527398900 1432 dbSNP
rs1177080425 1439 dbSNP
rs561705054 1448 dbSNP
rs1421717861 1449 dbSNP
rs1178975683 1452 dbSNP
rs1246531114 1459 dbSNP
rs1447494204 1460 dbSNP
rs1039411324 1462 dbSNP
rs1289662045 1465 dbSNP
rs942567754 1466 dbSNP
rs1380583612 1468 dbSNP
rs888269579 1469 dbSNP
rs947032940 1470 dbSNP
rs7155932 1476 dbSNP
rs1310079854 1477 dbSNP
rs1054026427 1480 dbSNP
rs935552217 1481 dbSNP
rs1209071669 1482 dbSNP
rs1263819350 1485 dbSNP
rs1181153112 1491 dbSNP
rs751087709 1492 dbSNP
rs1046511472 1496 dbSNP
rs570941999 1503 dbSNP
rs765984550 1505 dbSNP
rs141696678 1508 dbSNP
rs762753829 1509 dbSNP
rs544744125 1511 dbSNP
rs1427724607 1514 dbSNP
rs916658249 1515 dbSNP
rs917365823 1522 dbSNP
rs1451757564 1529 dbSNP
rs1297600378 1534 dbSNP
rs991561729 1536 dbSNP
rs958939319 1539 dbSNP
rs1285109163 1547 dbSNP
rs12892633 1550 dbSNP
rs1133629 1554 dbSNP
rs1307312992 1560 dbSNP
rs919866472 1576 dbSNP
rs1213845262 1581 dbSNP
rs28589417 1596 dbSNP
rs1490369346 1599 dbSNP
rs576783304 1600 dbSNP
rs1245466903 1603 dbSNP
rs1398452572 1623 dbSNP
rs1178102289 1626 dbSNP
rs1410462347 1628 dbSNP
rs1019466316 1629 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55038.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000336219.3 | 3UTR | CAGCUGCAUCAACCUCCUUUUACCUUUAGAUAGGUGAAUUUUUACAAUUCAGUUUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000336219.3 | 3UTR | CAGCUGCAUCAACCUCCUUUUACCUUUAGAUAGGUGAAUUUUUACAAUUCAGUUUUACAUGUUUUGGGCAGUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.744 2.4e-5 0.537 4.1e-3 23 Click to see details
GSE28260 Renal cortex and medulla 0.699 3.9e-3 0.672 5.9e-3 13 Click to see details
GSE21687 Ependynoma primary tumors -0.292 9.6e-3 -0.264 1.8e-2 64 Click to see details
GSE21032 Prostate cancer 0.218 2.4e-2 0.265 7.7e-3 83 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.264 1.0e-1 -0.186 1.9e-1 25 Click to see details
GSE14794 Lymphoblastoid cells -0.134 1.0e-1 -0.123 1.2e-1 90 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.253 1.4e-1 0.320 8.4e-2 20 Click to see details
GSE19536 Breast cancer -0.105 1.5e-1 -0.064 2.6e-1 100 Click to see details
GSE28544 Breast cancer -0.217 1.5e-1 -0.101 3.2e-1 24 Click to see details
GSE38226 Liver fibrosis 0.219 1.7e-1 0.144 2.7e-1 21 Click to see details
GSE27834 Pluripotent stem cells -0.234 1.9e-1 -0.100 3.6e-1 16 Click to see details
GSE17498 Multiple myeloma -0.125 2.2e-1 -0.174 1.4e-1 40 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.273 2.6e-1 -0.476 1.2e-1 8 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.131 2.7e-1 0.106 3.1e-1 25 Click to see details
GSE19783 ER- ER- breast cancer -0.071 2.7e-1 -0.048 3.4e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer -0.138 2.8e-1 -0.242 1.5e-1 20 Click to see details
GSE19350 CNS germ cell tumors -0.178 2.9e-1 0.238 2.3e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.067 3.6e-1 -0.032 4.3e-1 32 Click to see details
GSE17306 Multiple myeloma -0.052 3.6e-1 -0.062 3.4e-1 49 Click to see details
GSE21849 B cell lymphoma -0.052 3.9e-1 -0.076 3.5e-1 29 Click to see details
GSE26953 Aortic valvular endothelial cells -0.014 4.7e-1 -0.020 4.6e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
459 hsa-miR-548c-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055126 SCD stearoyl-CoA desaturase 2 2
MIRT055360 PDCD4 programmed cell death 4 2 2
MIRT057340 PANK1 pantothenate kinase 1 2 2
MIRT058532 PRDM10 PR/SET domain 10 2 2
MIRT064700 CCND2 cyclin D2 2 4
MIRT068070 SPATA13 spermatogenesis associated 13 2 4
MIRT069438 CDCA4 cell division cycle associated 4 2 4
MIRT070546 EXOC5 exocyst complex component 5 2 2
MIRT070866 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071492 CALM1 calmodulin 1 2 6
MIRT077694 ZNF652 zinc finger protein 652 2 2
MIRT078290 RPS6KB1 ribosomal protein S6 kinase B1 2 2
MIRT080233 SMAD4 SMAD family member 4 2 6
MIRT080612 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT081130 LDLR low density lipoprotein receptor 2 6
MIRT083622 NCOA3 nuclear receptor coactivator 3 2 2
MIRT088674 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT089617 MAT2A methionine adenosyltransferase 2A 2 2
MIRT091138 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT091699 TGFBR2 transforming growth factor beta receptor 2 2 4
MIRT093590 SPCS3 signal peptidase complex subunit 3 2 2
MIRT096243 CANX calnexin 2 2
MIRT099747 SOX4 SRY-box 4 2 6
MIRT101977 EPHA7 EPH receptor A7 2 4
MIRT102959 EN2 engrailed homeobox 2 2 4
MIRT107464 NFIB nuclear factor I B 2 2
MIRT107876 FXN frataxin 2 2
MIRT110174 ZNF711 zinc finger protein 711 2 2
MIRT115410 UNKL unkempt family like zinc finger 2 4
MIRT121611 LMNB1 lamin B1 2 2
MIRT130394 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT134673 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT142311 RBBP6 RB binding protein 6, ubiquitin ligase 2 2
MIRT165349 AFF4 AF4/FMR2 family member 4 2 2
MIRT165649 DCTN4 dynactin subunit 4 2 2
MIRT166971 FCHO2 FCH domain only 2 2 2
MIRT176163 PGK1 phosphoglycerate kinase 1 2 2
MIRT181740 UHMK1 U2AF homology motif kinase 1 2 4
MIRT186876 CCNT1 cyclin T1 2 2
MIRT187285 DAZAP2 DAZ associated protein 2 2 2
MIRT188824 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 4
MIRT196761 CRLF3 cytokine receptor like factor 3 2 2
MIRT200994 ZNF805 zinc finger protein 805 2 4
MIRT203681 DIP2A disco interacting protein 2 homolog A 2 2
MIRT206304 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT208377 SLC25A36 solute carrier family 25 member 36 2 2
MIRT211083 C4ORF32 family with sequence similarity 241 member A 2 2
MIRT211231 FGF2 fibroblast growth factor 2 2 6
MIRT212651 SH3BP2 SH3 domain binding protein 2 2 2
MIRT217310 FOXO3 forkhead box O3 2 2
MIRT218910 GLO1 glyoxalase I 2 4
MIRT223962 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT242382 TMC5 transmembrane channel like 5 2 2
MIRT262836 CCDC6 coiled-coil domain containing 6 2 2
MIRT264533 TARDBP TAR DNA binding protein 2 6
MIRT273412 SLC11A2 solute carrier family 11 member 2 2 2
MIRT274711 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT275277 NUDT4 nudix hydrolase 4 2 2
MIRT298516 SPOPL speckle type BTB/POZ protein like 2 2
MIRT298567 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT302422 CLIP4 CAP-Gly domain containing linker protein family member 4 2 4
MIRT320613 ZNRF2 zinc and ring finger 2 2 2
MIRT320791 PURB purine rich element binding protein B 2 2
MIRT322922 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT340714 MZT1 mitotic spindle organizing protein 1 2 2
MIRT347234 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT348559 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT354233 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT354310 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT358523 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT362352 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT363825 GOLGA7 golgin A7 2 2
MIRT367234 RPL5 ribosomal protein L5 2 6
MIRT368206 ADIPOR2 adiponectin receptor 2 2 2
MIRT372013 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 4
MIRT374304 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT377387 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT379837 USP6NL USP6 N-terminal like 2 8
MIRT392413 RREB1 ras responsive element binding protein 1 2 4
MIRT395591 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT400810 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT401743 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT408462 MTX3 metaxin 3 2 2
MIRT441521 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT442173 AZF1 azoospermia factor 1 2 2
MIRT443086 ABLIM1 actin binding LIM protein 1 2 2
MIRT443391 CHML CHM like, Rab escort protein 2 2 2
MIRT443459 ANP32B acidic nuclear phosphoprotein 32 family member B 2 6
MIRT443653 MRAS muscle RAS oncogene homolog 2 2
MIRT443718 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT443963 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT444249 CTNND1 catenin delta 1 2 2
MIRT444795 TMEM251 transmembrane protein 251 2 2
MIRT444943 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT445180 ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 2 2
MIRT445334 CWC27 CWC27 spliceosome associated protein homolog 2 2
MIRT445707 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT446048 TPR translocated promoter region, nuclear basket protein 2 2
MIRT446091 ENAH ENAH, actin regulator 2 2
MIRT446236 FZD6 frizzled class receptor 6 2 4
MIRT446543 GOLGA8B golgin A8 family member B 2 2
MIRT446592 FBXO40 F-box protein 40 2 2
MIRT446741 MYEF2 myelin expression factor 2 2 2
MIRT446775 ATAD5 ATPase family, AAA domain containing 5 2 2
MIRT447451 ADM adrenomedullin 2 2
MIRT447801 EPC2 enhancer of polycomb homolog 2 2 2
MIRT448179 IL1RAP interleukin 1 receptor accessory protein 2 4
MIRT448773 GOLGA8A golgin A8 family member A 2 2
MIRT449473 HAT1 histone acetyltransferase 1 2 2
MIRT449635 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT450237 CDKN2AIP CDKN2A interacting protein 2 2
MIRT450379 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT450506 ALPK3 alpha kinase 3 2 2
MIRT451500 FOPNL FGFR1OP N-terminal like 2 2
MIRT452105 NUCB2 nucleobindin 2 2 2
MIRT456851 ZNF460 zinc finger protein 460 2 2
MIRT463263 ZIC5 Zic family member 5 2 4
MIRT463348 ZFHX3 zinc finger homeobox 3 2 2
MIRT464778 UBE2G1 ubiquitin conjugating enzyme E2 G1 2 2
MIRT467594 SLC7A5 solute carrier family 7 member 5 2 6
MIRT468223 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468469 SET SET nuclear proto-oncogene 2 4
MIRT469368 REST RE1 silencing transcription factor 2 6
MIRT470526 PPP1CC protein phosphatase 1 catalytic subunit gamma 2 4
MIRT472908 MT1E metallothionein 1E 2 2
MIRT473336 METTL21A methyltransferase like 21A 2 2
MIRT476666 FXR1 FMR1 autosomal homolog 1 2 2
MIRT477145 FAM102B family with sequence similarity 102 member B 2 2
MIRT478928 CPNE3 copine 3 2 2
MIRT479047 COIL coilin 2 8
MIRT481917 ANKRD40 ankyrin repeat domain 40 2 6
MIRT483700 BICD2 BICD cargo adaptor 2 2 8
MIRT483889 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT484733 SF3A1 splicing factor 3a subunit 1 2 2
MIRT485053 THBS1 thrombospondin 1 2 2
MIRT485497 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT485747 CALCR calcitonin receptor 2 2
MIRT486125 MT2A metallothionein 2A 2 2
MIRT494099 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT494103 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT499091 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT501109 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503173 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT504132 RCC1 regulator of chromosome condensation 1 2 6
MIRT504717 DLC1 DLC1 Rho GTPase activating protein 2 6
MIRT505379 TMEM154 transmembrane protein 154 2 4
MIRT505657 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT505887 RNF219 ring finger protein 219 2 2
MIRT506525 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507083 GXYLT1 glucoside xylosyltransferase 1 2 6
MIRT507090 GPR180 G protein-coupled receptor 180 2 6
MIRT507174 GAN gigaxonin 2 10
MIRT507940 BTG3 BTG anti-proliferation factor 3 2 6
MIRT508316 RPL18 ribosomal protein L18 2 4
MIRT509452 CAPRIN1 cell cycle associated protein 1 2 4
MIRT509488 LARP1 La ribonucleoprotein domain family member 1 2 10
MIRT509609 GALK2 galactokinase 2 2 8
MIRT510229 PLEKHG3 pleckstrin homology and RhoGEF domain containing G3 2 8
MIRT510607 TPPP tubulin polymerization promoting protein 2 6
MIRT510842 RARB retinoic acid receptor beta 2 6
MIRT510983 PFN2 profilin 2 2 6
MIRT511370 IKZF4 IKAROS family zinc finger 4 2 6
MIRT512481 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 4
MIRT513061 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT513873 HOXA5 homeobox A5 2 2
MIRT515645 MYBPC1 myosin binding protein C, slow type 2 2
MIRT516649 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT516926 OSTF1 osteoclast stimulating factor 1 2 6
MIRT517348 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 6
MIRT519196 NAA38 LSM8 homolog, U6 small nuclear RNA associated 2 6
MIRT520215 WASL Wiskott-Aldrich syndrome like 2 8
MIRT520541 TRA2B transformer 2 beta homolog 2 4
MIRT521613 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT522258 NLK nemo like kinase 2 2
MIRT522809 KPNA3 karyopherin subunit alpha 3 2 6
MIRT522945 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT523347 GUCD1 guanylyl cyclase domain containing 1 2 4
MIRT523375 GSR glutathione-disulfide reductase 2 4
MIRT525158 ZNF329 zinc finger protein 329 2 2
MIRT526066 CCDC81 coiled-coil domain containing 81 2 2
MIRT526164 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT526182 HEPH hephaestin 2 2
MIRT526646 TRIM16L tripartite motif containing 16 like 2 2
MIRT527156 SCN9A sodium voltage-gated channel alpha subunit 9 2 4
MIRT527442 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527685 ZNF552 zinc finger protein 552 2 4
MIRT527751 NANOGNB NANOG neighbor homeobox 2 2
MIRT527788 TMEM44 transmembrane protein 44 2 8
MIRT528462 NXT2 nuclear transport factor 2 like export factor 2 2 4
MIRT528869 RSPH3 radial spoke head 3 homolog 2 2
MIRT529046 ARL9 ADP ribosylation factor like GTPase 9 2 2
MIRT529107 TLL2 tolloid like 2 2 2
MIRT529377 SKP1 S-phase kinase associated protein 1 2 4
MIRT529403 ICK intestinal cell kinase 2 2
MIRT529591 TMEM220 transmembrane protein 220 2 2
MIRT530213 NSUN7 NOP2/Sun RNA methyltransferase family member 7 2 2
MIRT530800 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT530839 MAPK7 mitogen-activated protein kinase 7 2 2
MIRT530859 TTLL5 tubulin tyrosine ligase like 5 2 2
MIRT531433 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT532311 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT532501 HOXA13 homeobox A13 2 2
MIRT532601 SIX4 SIX homeobox 4 2 2
MIRT533356 UBE2W ubiquitin conjugating enzyme E2 W 2 4
MIRT534389 SEPT2 septin 2 2 2
MIRT534798 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT536193 MAML3 mastermind like transcriptional coactivator 3 2 2
MIRT536243 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT536534 KCTD10 potassium channel tetramerization domain containing 10 2 2
MIRT536932 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2 2
MIRT538628 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT538836 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT538944 BMP2K BMP2 inducible kinase 2 2
MIRT539038 ATXN7L1 ataxin 7 like 1 2 2
MIRT539379 ADSS adenylosuccinate synthase 2 6
MIRT539746 SH3RF2 SH3 domain containing ring finger 2 2 2
MIRT539879 RPL32 ribosomal protein L32 2 2
MIRT539956 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT540458 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT541611 ASB11 ankyrin repeat and SOCS box containing 11 2 2
MIRT543034 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT544838 PLA2G16 phospholipase A2 group XVI 2 2
MIRT546177 TRIAP1 TP53 regulated inhibitor of apoptosis 1 2 2
MIRT546320 TM9SF3 transmembrane 9 superfamily member 3 2 4
MIRT546897 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT546950 SFTPA1 surfactant protein A1 2 2
MIRT547166 PDZD8 PDZ domain containing 8 2 2
MIRT547323 NPTN neuroplastin 2 2
MIRT547359 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT547562 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548082 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548218 FKBP1A FK506 binding protein 1A 2 2
MIRT548768 CNN3 calponin 3 2 2
MIRT548925 CDK6 cyclin dependent kinase 6 2 2
MIRT548954 CDC27 cell division cycle 27 2 2
MIRT549696 TLE3 transducin like enhancer of split 3 2 4
MIRT549734 NUP37 nucleoporin 37 2 2
MIRT549863 MCM4 minichromosome maintenance complex component 4 2 2
MIRT551070 MKLN1 muskelin 1 2 2
MIRT551194 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT552113 EMC7 ER membrane protein complex subunit 7 2 2
MIRT552236 SART3 squamous cell carcinoma antigen recognized by T-cells 3 2 2
MIRT552287 CBY1 chibby family member 1, beta catenin antagonist 2 4
MIRT552468 ZNF280B zinc finger protein 280B 2 2
MIRT553628 TJP1 tight junction protein 1 2 2
MIRT555507 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT556953 IGF1R insulin like growth factor 1 receptor 2 4
MIRT557203 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 4
MIRT557538 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT557603 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT558233 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT558261 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT558336 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558875 CCT6A chaperonin containing TCP1 subunit 6A 2 2
MIRT559684 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT559986 RPL24 ribosomal protein L24 2 2
MIRT561051 SKP2 S-phase kinase associated protein 2 2 2
MIRT561783 PAXBP1 PAX3 and PAX7 binding protein 1 2 2
MIRT561833 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT562588 CBX2 chromobox 2 2 2
MIRT562956 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563047 NBPF12 NBPF member 12 2 2
MIRT563157 NOLC1 nucleolar and coiled-body phosphoprotein 1 2 2
MIRT563213 ZNF813 zinc finger protein 813 2 2
MIRT563436 SLC3A2 solute carrier family 3 member 2 2 2
MIRT563927 STAT2 signal transducer and activator of transcription 2 2 2
MIRT564149 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT564204 ABT1 activator of basal transcription 1 2 2
MIRT564214 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564637 ZNF562 zinc finger protein 562 2 4
MIRT564932 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT565587 SLC6A8 solute carrier family 6 member 8 2 2
MIRT565667 SIX1 SIX homeobox 1 2 2
MIRT566233 PTMA prothymosin, alpha 2 2
MIRT566237 PTCH1 patched 1 2 2
MIRT566454 PHAX phosphorylated adaptor for RNA export 2 4
MIRT566949 LEPROT leptin receptor overlapping transcript 2 2
MIRT567323 HMGB2 high mobility group box 2 2 2
MIRT568381 ATP13A3 ATPase 13A3 2 2
MIRT568427 ATF7IP activating transcription factor 7 interacting protein 2 4
MIRT571579 USP15 ubiquitin specific peptidase 15 2 2
MIRT572335 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT573391 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT573574 RANBP1 RAN binding protein 1 2 2
MIRT574388 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT576611 Ccdc117 coiled-coil domain containing 117 2 2
MIRT608962 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609962 ATF7IP2 activating transcription factor 7 interacting protein 2 2 2
MIRT611714 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT613603 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT614014 PAOX polyamine oxidase 2 2
MIRT614159 GNA14 G protein subunit alpha 14 2 2
MIRT614181 FAM53B family with sequence similarity 53 member B 2 2
MIRT614544 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 2 2
MIRT615284 FGF5 fibroblast growth factor 5 2 2
MIRT615831 PCSK7 proprotein convertase subtilisin/kexin type 7 2 2
MIRT618541 SEMA5A semaphorin 5A 2 2
MIRT619136 MCOLN3 mucolipin 3 2 2
MIRT619455 NUP214 nucleoporin 214 2 2
MIRT620038 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT620243 CCDC65 coiled-coil domain containing 65 2 2
MIRT620369 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT620474 CERS6 ceramide synthase 6 2 2
MIRT620881 KCTD7 potassium channel tetramerization domain containing 7 2 2
MIRT621948 STYX serine/threonine/tyrosine interacting protein 2 2
MIRT622156 SNTG1 syntrophin gamma 1 2 2
MIRT622312 SETD5 SET domain containing 5 2 2
MIRT622486 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT623190 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT623650 HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 2 2
MIRT623655 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT624403 CCDC80 coiled-coil domain containing 80 2 4
MIRT624489 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 2 2
MIRT624694 AR androgen receptor 2 2
MIRT625011 PAK4 p21 (RAC1) activated kinase 4 2 2
MIRT625792 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha 2 2
MIRT625987 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626122 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626394 ZMYM6 zinc finger MYM-type containing 6 2 2
MIRT626560 NAGS N-acetylglutamate synthase 2 2
MIRT626568 DRAM2 DNA damage regulated autophagy modulator 2 2 2
MIRT626647 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT626956 PRDM2 PR/SET domain 2 2 2
MIRT627868 PARVB parvin beta 2 2
MIRT628071 KCNJ13 potassium voltage-gated channel subfamily J member 13 2 2
MIRT628198 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 2 2
MIRT630547 GJB7 gap junction protein beta 7 2 2
MIRT633570 LAMP2 lysosomal associated membrane protein 2 2 2
MIRT635535 ELMOD2 ELMO domain containing 2 2 2
MIRT636219 SNAI2 snail family transcriptional repressor 2 2 2
MIRT636614 CLIC5 chloride intracellular channel 5 2 2
MIRT640754 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640996 PROK2 prokineticin 2 2 2
MIRT641143 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT642288 ZNF99 zinc finger protein 99 2 2
MIRT643506 ZNF28 zinc finger protein 28 2 2
MIRT644027 ZNF792 zinc finger protein 792 2 2
MIRT644073 PARG poly(ADP-ribose) glycohydrolase 2 2
MIRT644598 SPOP speckle type BTB/POZ protein 2 2
MIRT644631 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT644955 IFNB1 interferon beta 1 2 2
MIRT646357 CPT1B carnitine palmitoyltransferase 1B 2 2
MIRT647624 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT649089 FBXO25 F-box protein 25 2 4
MIRT649382 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT651176 ZNF319 zinc finger protein 319 2 2
MIRT652305 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652393 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT652815 TBL2 transducin beta like 2 2 2
MIRT653111 SRSF1 serine and arginine rich splicing factor 1 2 2
MIRT653145 SRPK2 SRSF protein kinase 2 2 2
MIRT653815 SIN3A SIN3 transcription regulator family member A 2 2
MIRT653947 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 2 2
MIRT655157 PHF21A PHD finger protein 21A 2 2
MIRT655317 PDCD11 programmed cell death 11 2 2
MIRT656937 KIAA1456 KIAA1456 2 2
MIRT657000 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT657557 GSK3B glycogen synthase kinase 3 beta 2 2
MIRT657692 GPR135 G protein-coupled receptor 135 2 2
MIRT658251 FAXC failed axon connections homolog 2 2
MIRT658717 ELOVL4 ELOVL fatty acid elongase 4 2 2
MIRT659421 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT659488 CLDN1 claudin 1 2 2
MIRT659534 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT659574 CEP85L centrosomal protein 85 like 2 2
MIRT660570 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT661595 BMPR1B bone morphogenetic protein receptor type 1B 2 2
MIRT661844 ZNF587B zinc finger protein 587B 2 2
MIRT663397 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT664409 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT664804 GALC galactosylceramidase 2 2
MIRT664834 GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 2 2
MIRT666146 SP4 Sp4 transcription factor 2 2
MIRT666779 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT667105 SLC25A2 solute carrier family 25 member 2 2 2
MIRT667115 OLA1 Obg like ATPase 1 2 2
MIRT667504 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT668011 HCFC2 host cell factor C2 2 2
MIRT672876 TTC28 tetratricopeptide repeat domain 28 2 2
MIRT682598 CPA4 carboxypeptidase A4 2 2
MIRT683340 ZNF581 zinc finger protein 581 2 2
MIRT683581 CARD8 caspase recruitment domain family member 8 2 2
MIRT683691 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683712 EXOSC6 exosome component 6 2 4
MIRT684560 ZNF708 zinc finger protein 708 2 2
MIRT685425 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT685509 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT686052 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686140 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT686425 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT687716 KLF2 Kruppel like factor 2 2 2
MIRT687727 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT688183 FRRS1 ferric chelate reductase 1 2 2
MIRT688306 FAM208A family with sequence similarity 208 member A 2 2
MIRT688420 DUSP2 dual specificity phosphatase 2 2 2
MIRT688491 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT688725 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689208 ZNF574 zinc finger protein 574 2 2
MIRT690340 DHX36 DEAH-box helicase 36 2 2
MIRT690516 ZNF845 zinc finger protein 845 2 2
MIRT690614 DCTN3 dynactin subunit 3 2 2
MIRT691051 RDH13 retinol dehydrogenase 13 2 2
MIRT691265 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT692171 RNF207 ring finger protein 207 2 2
MIRT692728 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT693384 ZNF528 zinc finger protein 528 2 2
MIRT694449 GSG2 histone H3 associated protein kinase 2 2
MIRT694485 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT695650 NUP205 nucleoporin 205 2 2
MIRT695803 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT696128 GLP2R glucagon like peptide 2 receptor 2 2
MIRT696694 APOC3 apolipoprotein C3 2 2
MIRT696888 SAMD15 sterile alpha motif domain containing 15 2 2
MIRT697790 UBXN7 UBX domain protein 7 2 2
MIRT698144 TNPO3 transportin 3 2 2
MIRT698363 TMEM127 transmembrane protein 127 2 2
MIRT698489 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699121 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT699849 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT701321 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT701386 NOA1 nitric oxide associated 1 2 2
MIRT701391 NLRC3 NLR family CARD domain containing 3 2 2
MIRT701954 MITF melanogenesis associated transcription factor 2 2
MIRT702167 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT702782 IFNLR1 interferon lambda receptor 1 2 2
MIRT703466 FOXJ3 forkhead box J3 2 2
MIRT703968 EMP2 epithelial membrane protein 2 2 2
MIRT703973 EMC10 ER membrane protein complex subunit 10 2 2
MIRT704350 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704603 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705272 BAHD1 bromo adjacent homology domain containing 1 2 2
MIRT707156 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707271 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT707461 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707505 AXL AXL receptor tyrosine kinase 2 2
MIRT707705 FAM118A family with sequence similarity 118 member A 2 2
MIRT707722 CDC6 cell division cycle 6 2 2
MIRT708018 TSPAN1 tetraspanin 1 2 2
MIRT708071 LIX1L limb and CNS expressed 1 like 2 2
MIRT708139 GK5 glycerol kinase 5 (putative) 2 2
MIRT710550 NR4A2 nuclear receptor subfamily 4 group A member 2 2 2
MIRT713228 GPR75 G protein-coupled receptor 75 2 2
MIRT713273 SPRTN SprT-like N-terminal domain 2 2
MIRT715622 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT716477 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT716492 ZNF394 zinc finger protein 394 2 2
MIRT717715 NCKAP1 NCK associated protein 1 2 2
MIRT718046 ANAPC1 anaphase promoting complex subunit 1 2 2
MIRT719400 SLC15A4 solute carrier family 15 member 4 2 2
MIRT719899 PTGIS prostaglandin I2 synthase 2 2
MIRT720781 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722063 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
MIRT723234 FAM91A1 family with sequence similarity 91 member A1 2 2
MIRT723768 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT724057 FAM84A family with sequence similarity 84 member A 2 2
MIRT725194 SDAD1 SDA1 domain containing 1 2 2
MIRT735687 IL6ST interleukin 6 signal transducer 2 0
MIRT735689 ACVR1C activin A receptor type 1C 2 0
MIRT736080 SPOCK1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-548c-3p Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548c Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-548c-3p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (HepG2, Hep-394, Hep-SWX, Huh-7)
hsa-miR-548c-3p Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548c-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548c-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission