miRTarBase - #MIRT071781


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pre-miRNA Information
pre-miRNA hsa-mir-147a   
Genomic Coordinates chr9: 120244979 - 120245050
Description Homo sapiens miR-147a stem-loop
Comment Lagos-Quintana et al. cloned miR-147 from mouse spleen tissue (supplementary information) and represented here. The expression of miR-147 has not been verified in human.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-147a
Sequence 47| GUGUGUGGAAAUGCUUCUGC |66
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1288578238 2 dbSNP
rs768706293 4 dbSNP
rs747256852 5 dbSNP
rs776160818 8 dbSNP
rs780204135 13 dbSNP
rs1320197794 16 dbSNP
rs767246164 17 dbSNP
Putative Targets

Gene Information
Gene Symbol RNF11   
Synonyms CGI-123, SID1669
Description ring finger protein 11
Transcript NM_014372   
Expression
Putative miRNA Targets on RNF11
3'UTR of RNF11
(miRNA target sites are highlighted)		 
>RNF11|NM_014372|3'UTR
   1 GCCAGGGTCTCTTATCTGACTTCAAGTGAACCACCATTTTGGTGGTTTTGATCTTTTGTCACTGAGCCCAAAGAGCCAGG
  81 GATTAGGAATTAAGATCGTGCACAAAAGTTTCCTTAAAATTCCTGGATGGCTGCAGATGTTGGGGGAAAAAGTACGTGAT
 161 ATTTTAGAAACTTAGTGGGAAAAGTAGGATGGTATTTTTATGTAAAGCCTTGACCCAATGTTTAAAAATATAATTGTATT
 241 TAGATCTTGTTATTGCTCCAGTACATAGGAATTGTGTAAAGTGTTAACAGCAGCTGTATTTGTTTAAATTGTGTGTATTG
 321 AAGATTAGGAAAAAGATAGTAGTTATTTTTCCTAAATGAAATAACTTTCTTCTCTTCCCCTTCCCCACCCGAATTCTTTT
 401 CTGAAGTTGCTGGCATTTGGGTCAAGGTTTTATTAAAAGCTACATTTTATAACACTGGCACACACAAAAAAGTAGTTTTA
 481 AGCTTGTTTGCACAGTTCTTTTTTTCCATTGGAAATGGAATTCATTGCCTTAGGTCTTTTTAAATAGTGTATTATTATCG
 561 TTGGGGCTGGCTCTATGCTTGAAAACCAGTTTATTTATAACCTGTTATAAGTGCTATATTCTGTTTGCAGTTAGGAAATG
 641 CAGAATTCAAAGTGATCTCCTAGCTTGTAAGCAAACTGAGATGCACTATCCCTTTTCTATAAAAAATAAGTTAATGTGTC
 721 AAGAAACCAACTCTATTAAGGTGGGGTTTAATATTACCCTTTCCTATGTGTTTTATCTAATTATTTTGGTTGTTAATATG
 801 GTGATAATGGAAAGTCAAGTTAAATTTTAAATATTAAGAATTCTGATTTATTGAGATTGAATTATGCCACCACGTTTATG
 881 TAAAAATGAAGGTGGCACCGTGGTGAGACCTAATGAGAAATAGTTACTCAGTTGTAAAAATTTTGATTTATTCTCTTTCT
 961 TCTGACCTCCTTGCCTCTTGTCTTGAACCATAGCAAAAGGATACTGCATCTCTCATTACTGTAGTGCTGAGGTTATTGAA
1041 GTTATACAAAACACATCTCAGTCTCTGTTTCTTGGAAAGGTATCTATTACATCCTGCTAGCTGACTGACAAAACTAAGCA
1121 GGGAGAATAAAGATAATTGTATTTTATGTTTTGCACACAAACGCAGAATTTGTATAACCATATGACTTCATAGTTGTGAT
1201 CTCAAAAAAGAAGGAATTTCTCCTTTGTTTCTTGCAGTTAATGTAAGAATACTTTAAATCTCTAAGCTTCTGAAGTGTTA
1281 GAGGTAGAGATGGTCTAGTAAAGATGTAGTAGTAATGTTTTATCCATTTAGCATGTGTTTATTTTTTCATATGTACTCAA
1361 AGGTGACTTATTGGTTCACCTCAGTGATATTACAGCTAAAAAAATCATTCATTAGCAAAAGGAAAAGTGGTCTCAACCTA
1441 ACATCAGAAGTGTTTCTTATTATTATTTTATATTGAGTTGAATATTGAACTCTAACAGTTTTCTACATACAAAACACAGT
1521 GTCATGAAGGTTATTCATAATTGCATTATAGAGGAATGTAGTATGTCATAAGTACTTTGTAAAGATTTGACATTCAACTG
1601 TAGTATCCATATGTTGCTTAAATTTCCTTATGAGCCCCATGATGGAAAGACTTAAAGATGAATTTGAGAAAAATTGAAAG
1681 AAATTAGATTATCAGGTTCTGTTAAATTGTTACATGTATCTTGCTTAAATTTCTGTTTATTAATTTATATCCACCCAAGT
1761 ACATAAAGCAAATTTGGAGGAAACAACTGAAGTTGTGCAATATTTTCTGATAATTGCTTTTTTTATTCTTGTGTTTTCTA
1841 CTTAAACATAATGTCTGTGTCATCAAGTATTATAGTCAGACTTTTCTTTTTTTCTAGATTGTTAAAATTGGCAAATGAAC
1921 TTTTTTAAAAATCATCTTCCATGTTGCAGTTAGTCTTTCTTTTCATTACAAGTCTTTCACAGAAGTTTGGTGGTAATATT
2001 GAAAGAACTAGCATTGGGCAGAATGTGTCTTTTTTAGGCACTTTATATTCTCAACATACAATGTTAAGAACCATCAATTT
2081 TGACTTTTACTAAGTTGTTAAATAAAGTTATAATACAGCTGTGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgucuUCGUAAAGGUGUGUg 5'
               ||: ||||:|||:| 
Target 5' ctaacAGT-TTTCTACATAc 3'
 1492 - 1510 126.00 -14.40
2 
miRNA  3' cgucuucguAAAGGUGUGUg 5'
                   ||| |||||| 
Target 5' attttatgtTTTGCACACAa 3'
 1141 - 1160 123.00 -8.50
3 
miRNA  3' cgUCUUCGUAAAGGUGUGUg 5'
            | || || |  |||||| 
Target 5' ttATAA-CACTGGCACACAc 3'
 447 - 465 121.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN16136976 17 COSMIC
COSN1105486 24 COSMIC
COSN8638430 64 COSMIC
COSN31530958 77 COSMIC
COSN13550254 98 COSMIC
COSN20073407 99 COSMIC
COSN30125252 102 COSMIC
COSN16129099 143 COSMIC
COSN28867239 152 COSMIC
COSN31550907 175 COSMIC
COSN30135771 191 COSMIC
COSN31546778 373 COSMIC
COSN30542057 410 COSMIC
COSN31578677 673 COSMIC
COSN31603437 855 COSMIC
COSN22216894 857 COSMIC
COSN31548819 892 COSMIC
COSN31577314 917 COSMIC
COSN31541232 925 COSMIC
COSN31533621 1032 COSMIC
COSN31540496 1131 COSMIC
COSN31513709 1171 COSMIC
COSN21871698 1282 COSMIC
COSN16623637 1537 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750945149 1 dbSNP
rs1157833864 2 dbSNP
rs1388897084 4 dbSNP
rs1381988459 5 dbSNP
rs1268065026 7 dbSNP
rs1429515882 8 dbSNP
rs1383627599 13 dbSNP
rs1441759857 14 dbSNP
rs756661289 15 dbSNP
rs374679731 16 dbSNP
rs752194608 22 dbSNP
rs1304678200 24 dbSNP
rs758126066 26 dbSNP
rs1407466727 36 dbSNP
rs777353077 43 dbSNP
rs751206505 46 dbSNP
rs775914972 51 dbSNP
rs1443710653 57 dbSNP
rs947307962 69 dbSNP
rs1417386064 76 dbSNP
rs76909946 82 dbSNP
rs565470362 95 dbSNP
rs1197760992 96 dbSNP
rs1374638850 98 dbSNP
rs1490288228 99 dbSNP
rs1276052330 102 dbSNP
rs61100121 108 dbSNP
rs1308756685 109 dbSNP
rs1270226284 120 dbSNP
rs1167300546 131 dbSNP
rs564808037 134 dbSNP
rs1213651835 140 dbSNP
rs563193580 148 dbSNP
rs768966978 152 dbSNP
rs1402932818 153 dbSNP
rs774546077 156 dbSNP
rs886196224 157 dbSNP
rs1005049575 168 dbSNP
rs1352856171 169 dbSNP
rs1169883545 172 dbSNP
rs1415076038 176 dbSNP
rs1431802418 193 dbSNP
rs1016868184 219 dbSNP
rs1480323583 231 dbSNP
rs1404922490 232 dbSNP
rs1435441928 233 dbSNP
rs1252910597 236 dbSNP
rs1179499809 243 dbSNP
rs530090663 258 dbSNP
rs1325093364 262 dbSNP
rs963585015 266 dbSNP
rs1232788007 269 dbSNP
rs1203260527 275 dbSNP
rs533326693 277 dbSNP
rs767062438 284 dbSNP
rs1227314955 292 dbSNP
rs772845556 299 dbSNP
rs764524727 300 dbSNP
rs1264629414 311 dbSNP
rs566788322 314 dbSNP
rs868770595 315 dbSNP
rs954673121 319 dbSNP
rs1307381837 327 dbSNP
rs1371141018 328 dbSNP
rs1297531454 336 dbSNP
rs1347166146 337 dbSNP
rs1221770284 338 dbSNP
rs1448926511 342 dbSNP
rs189514417 353 dbSNP
rs1334978670 373 dbSNP
rs367629850 378 dbSNP
rs1465502482 386 dbSNP
rs552438992 391 dbSNP
rs1263546608 397 dbSNP
rs568462622 405 dbSNP
rs1445113389 413 dbSNP
rs957044313 418 dbSNP
rs1378162276 422 dbSNP
rs988641734 426 dbSNP
rs914435228 428 dbSNP
rs370652065 445 dbSNP
rs1201411849 448 dbSNP
rs77924765 453 dbSNP
rs1044311706 459 dbSNP
rs1217759260 460 dbSNP
rs1314893445 466 dbSNP
rs1306221522 467 dbSNP
rs537664477 484 dbSNP
rs1246542984 502 dbSNP
rs11553363 508 dbSNP
rs149441148 510 dbSNP
rs1457418316 523 dbSNP
rs1312957772 525 dbSNP
rs1451979272 526 dbSNP
rs1385999786 528 dbSNP
rs1290852691 532 dbSNP
rs1452158972 533 dbSNP
rs927196240 537 dbSNP
rs564796277 542 dbSNP
rs56890493 548 dbSNP
rs886172458 551 dbSNP
rs1181254928 554 dbSNP
rs530812754 555 dbSNP
rs1262060794 557 dbSNP
rs1187851089 560 dbSNP
rs1484775247 561 dbSNP
rs1259892487 566 dbSNP
rs1037427988 568 dbSNP
rs899317805 576 dbSNP
rs1289467207 585 dbSNP
rs1245425259 588 dbSNP
rs1324709994 590 dbSNP
rs1327088875 593 dbSNP
rs1333345004 594 dbSNP
rs1380703738 599 dbSNP
rs1361724952 609 dbSNP
rs1426906185 617 dbSNP
rs1364321281 618 dbSNP
rs1163487187 625 dbSNP
rs1423464436 626 dbSNP
rs1403698590 627 dbSNP
rs1172132482 629 dbSNP
rs1282720884 638 dbSNP
rs1329973261 639 dbSNP
rs1230433161 660 dbSNP
rs7340123 661 dbSNP
rs1199932445 662 dbSNP
rs1259204027 666 dbSNP
rs1490778479 668 dbSNP
rs535418064 674 dbSNP
rs1221580919 684 dbSNP
rs553716996 687 dbSNP
rs369089634 689 dbSNP
rs1253102185 690 dbSNP
rs1204333550 698 dbSNP
rs1225306057 701 dbSNP
rs1307175511 706 dbSNP
rs1284154164 707 dbSNP
rs996305546 717 dbSNP
rs1343960022 731 dbSNP
rs1303087152 733 dbSNP
rs1267873045 736 dbSNP
rs1029169102 741 dbSNP
rs182062668 746 dbSNP
rs1490819777 759 dbSNP
rs545834885 760 dbSNP
rs760194952 767 dbSNP
rs1031441583 768 dbSNP
rs1472646091 772 dbSNP
rs1160791442 776 dbSNP
rs956798078 778 dbSNP
rs1198628360 780 dbSNP
rs1438373616 783 dbSNP
rs147498188 788 dbSNP
rs1194215772 791 dbSNP
rs1453424739 792 dbSNP
rs1164184816 793 dbSNP
rs1264000960 800 dbSNP
rs915346020 808 dbSNP
rs376927190 834 dbSNP
rs968499410 838 dbSNP
rs979939780 853 dbSNP
rs1240181862 857 dbSNP
rs1338089171 859 dbSNP
rs766442366 861 dbSNP
rs1367921164 874 dbSNP
rs1423255973 875 dbSNP
rs1303131298 881 dbSNP
rs1351123991 895 dbSNP
rs1411771846 900 dbSNP
rs138476185 901 dbSNP
rs544842668 904 dbSNP
rs552332541 909 dbSNP
rs938621883 912 dbSNP
rs1265781354 913 dbSNP
rs563106928 918 dbSNP
rs1056788010 921 dbSNP
rs1220098103 922 dbSNP
rs1418581206 923 dbSNP
rs1243783871 924 dbSNP
rs1205834305 926 dbSNP
rs907504774 937 dbSNP
rs1290987301 949 dbSNP
rs1483060135 964 dbSNP
rs1206163856 969 dbSNP
rs1178446341 970 dbSNP
rs1247875884 976 dbSNP
rs1418143495 978 dbSNP
rs1238881550 981 dbSNP
rs1375545032 991 dbSNP
rs1187865144 993 dbSNP
rs1387447305 994 dbSNP
rs754224012 997 dbSNP
rs1454087146 1001 dbSNP
rs1333079350 1009 dbSNP
rs74849425 1009 dbSNP
rs753787713 1016 dbSNP
rs1386780155 1022 dbSNP
rs1371715798 1024 dbSNP
rs1385762980 1027 dbSNP
rs940389033 1028 dbSNP
rs754936555 1035 dbSNP
rs1237182176 1039 dbSNP
rs1194102661 1040 dbSNP
rs1449104725 1042 dbSNP
rs1296521545 1046 dbSNP
rs1204892942 1048 dbSNP
rs757628551 1053 dbSNP
rs765132505 1064 dbSNP
rs1317461962 1066 dbSNP
rs1247604295 1073 dbSNP
rs1379867171 1076 dbSNP
rs1050595525 1083 dbSNP
rs1430958025 1084 dbSNP
rs1328001607 1087 dbSNP
rs1384675175 1091 dbSNP
rs1399132938 1093 dbSNP
rs890692881 1099 dbSNP
rs1165384489 1100 dbSNP
rs1009590238 1110 dbSNP
rs1413083737 1114 dbSNP
rs1031263990 1137 dbSNP
rs1476539835 1148 dbSNP
rs1206619631 1156 dbSNP
rs143495145 1160 dbSNP
rs34974872 1163 dbSNP
rs558637221 1164 dbSNP
rs576815229 1166 dbSNP
rs1010912840 1168 dbSNP
rs1490610579 1173 dbSNP
rs1022354673 1181 dbSNP
rs1220816687 1184 dbSNP
rs1319436225 1196 dbSNP
rs147171069 1197 dbSNP
rs1200628794 1198 dbSNP
rs1214625180 1207 dbSNP
rs1341087621 1209 dbSNP
rs1268042556 1216 dbSNP
rs1244626371 1223 dbSNP
rs534665791 1233 dbSNP
rs1034213724 1241 dbSNP
rs1277149739 1249 dbSNP
rs959913678 1250 dbSNP
rs993132065 1260 dbSNP
rs1183378906 1261 dbSNP
rs1329666464 1263 dbSNP
rs1411723764 1265 dbSNP
rs1391226243 1280 dbSNP
rs191710775 1284 dbSNP
rs1430783623 1290 dbSNP
rs907789423 1291 dbSNP
rs1169018878 1296 dbSNP
rs1431851360 1298 dbSNP
rs940318067 1304 dbSNP
rs375913847 1306 dbSNP
rs973078646 1306 dbSNP
rs1338869820 1310 dbSNP
rs1439029539 1311 dbSNP
rs1404203819 1316 dbSNP
rs1452265268 1317 dbSNP
rs1217569465 1326 dbSNP
rs11553364 1330 dbSNP
rs552600570 1334 dbSNP
rs1284910128 1341 dbSNP
rs1221429302 1344 dbSNP
rs1050538320 1349 dbSNP
rs1280048917 1364 dbSNP
rs570632964 1367 dbSNP
rs1330968440 1368 dbSNP
rs1216233052 1372 dbSNP
rs531718353 1373 dbSNP
rs1408541561 1380 dbSNP
rs1174777200 1385 dbSNP
rs1432965974 1389 dbSNP
rs549548850 1391 dbSNP
rs1179404881 1397 dbSNP
rs944910177 1398 dbSNP
rs1197651980 1405 dbSNP
rs1223593360 1413 dbSNP
rs1053075696 1417 dbSNP
rs1207824706 1427 dbSNP
rs1311330053 1430 dbSNP
rs1307619626 1439 dbSNP
rs892725290 1444 dbSNP
rs1010902986 1454 dbSNP
rs1264547059 1457 dbSNP
rs1308680708 1457 dbSNP
rs1334956178 1458 dbSNP
rs1465868622 1464 dbSNP
rs748392833 1475 dbSNP
rs769806469 1493 dbSNP
rs1399416460 1506 dbSNP
rs1380207468 1508 dbSNP
rs546959884 1514 dbSNP
rs1244604260 1517 dbSNP
rs1444701382 1517 dbSNP
rs1002260423 1525 dbSNP
rs750646728 1526 dbSNP
rs567952005 1527 dbSNP
rs1185252612 1547 dbSNP
rs1482822687 1552 dbSNP
rs1261044484 1558 dbSNP
rs1351469344 1564 dbSNP
rs1285217573 1570 dbSNP
rs1246881241 1573 dbSNP
rs1361609082 1575 dbSNP
rs1310852900 1579 dbSNP
rs1395631118 1591 dbSNP
rs1035130654 1595 dbSNP
rs745956428 1596 dbSNP
rs960105790 1597 dbSNP
rs992685080 1600 dbSNP
rs1178663579 1602 dbSNP
rs1164706938 1603 dbSNP
rs1015250413 1606 dbSNP
rs1427370772 1607 dbSNP
rs1386514676 1609 dbSNP
rs961976346 1610 dbSNP
rs535734705 1613 dbSNP
rs1160243275 1618 dbSNP
rs1261956902 1623 dbSNP
rs181233941 1627 dbSNP
rs1487179328 1637 dbSNP
rs565627817 1638 dbSNP
rs1223047822 1642 dbSNP
rs1490871026 1644 dbSNP
rs973026767 1646 dbSNP
rs1345515730 1659 dbSNP
rs1308346270 1676 dbSNP
rs1297975170 1686 dbSNP
rs1217196148 1692 dbSNP
rs920287655 1693 dbSNP
rs1304308849 1719 dbSNP
rs1407240919 1739 dbSNP
rs1389175495 1741 dbSNP
rs35241499 1744 dbSNP
rs1291324628 1761 dbSNP
rs553441678 1785 dbSNP
rs931661356 1786 dbSNP
rs1373352116 1787 dbSNP
rs1172015002 1789 dbSNP
rs985818440 1790 dbSNP
rs1422604853 1801 dbSNP
rs1200094303 1810 dbSNP
rs1432673502 1811 dbSNP
rs1490835430 1818 dbSNP
rs1286975072 1825 dbSNP
rs1265148185 1826 dbSNP
rs1361196725 1835 dbSNP
rs1405541443 1842 dbSNP
rs1480966040 1843 dbSNP
rs1253296951 1850 dbSNP
rs1196935178 1851 dbSNP
rs1317709488 1854 dbSNP
rs911649876 1860 dbSNP
rs1320864281 1868 dbSNP
rs758585865 1872 dbSNP
rs568182753 1874 dbSNP
rs756624047 1878 dbSNP
rs1332989745 1881 dbSNP
rs1463691572 1882 dbSNP
rs1399073952 1888 dbSNP
rs1214106033 1893 dbSNP
rs1176943627 1900 dbSNP
rs557860963 1912 dbSNP
rs1375869716 1916 dbSNP
rs1241958833 1917 dbSNP
rs576187216 1927 dbSNP
rs1044014012 1930 dbSNP
rs1176830809 1931 dbSNP
rs1202274083 1934 dbSNP
rs896531887 1936 dbSNP
rs1266834220 1944 dbSNP
rs1263985993 1948 dbSNP
rs1480163305 1954 dbSNP
rs1183116629 1973 dbSNP
rs748359285 1975 dbSNP
rs1410439407 1986 dbSNP
rs1402167338 1987 dbSNP
rs905169584 1987 dbSNP
rs1156649480 1988 dbSNP
rs1240342695 1989 dbSNP
rs1002206413 1991 dbSNP
rs949350884 1999 dbSNP
rs1443899649 2002 dbSNP
rs1375784528 2003 dbSNP
rs1336970739 2009 dbSNP
rs1045629662 2015 dbSNP
rs1399738189 2024 dbSNP
rs897716113 2024 dbSNP
rs896601648 2030 dbSNP
rs1343053593 2055 dbSNP
rs544290048 2074 dbSNP
rs1454289723 2077 dbSNP
rs993361273 2088 dbSNP
rs1176920842 2098 dbSNP
rs1439149668 2099 dbSNP
rs1243989397 2102 dbSNP
rs1279712707 2103 dbSNP
rs1049390369 2111 dbSNP
rs535672745 2112 dbSNP
rs1255850732 2115 dbSNP
rs1206068290 2126 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 26994.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000242719.3 | 3UTR | AAGUUGCUGGCAUUUGGGUCAAGGUUUUAUUAAAAGCUACAUUUUAUAACACUGGCACACACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
125 hsa-miR-147a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT003810 VEGFA vascular endothelial growth factor A 2 1
MIRT005781 ACVR1C activin A receptor type 1C 1 1
MIRT054211 MCM3 minichromosome maintenance complex component 3 4 1
MIRT054212 NDUFA4 NDUFA4, mitochondrial complex associated 4 1
MIRT054213 PSMA3 proteasome subunit alpha 3 4 1
MIRT071781 RNF11 ring finger protein 11 2 2
MIRT077109 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 4
MIRT079945 RNF138 ring finger protein 138 2 2
MIRT104233 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT123790 CDK6 cyclin dependent kinase 6 2 2
MIRT215380 CREBRF CREB3 regulatory factor 2 2
MIRT252677 ZNF529 zinc finger protein 529 2 2
MIRT284530 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT395624 TRIOBP TRIO and F-actin binding protein 2 2
MIRT437576 CYP2S1 cytochrome P450 family 2 subfamily S member 1 2 1
MIRT452106 IFITM1 interferon induced transmembrane protein 1 2 2
MIRT457802 KLHL25 kelch like family member 25 2 2
MIRT464136 VPS28 VPS28, ESCRT-I subunit 2 2
MIRT470218 PRRC2B proline rich coiled-coil 2B 2 2
MIRT478219 DDX52 DExD-box helicase 52 2 2
MIRT478986 COLGALT1 collagen beta(1-O)galactosyltransferase 1 2 2
MIRT479778 CCND1 cyclin D1 2 2
MIRT484477 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484979 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 8
MIRT485017 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 8
MIRT485035 TMEM189 transmembrane protein 189 2 8
MIRT485222 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT490144 TERF2IP TERF2 interacting protein 2 6
MIRT490352 DPYSL5 dihydropyrimidinase like 5 2 4
MIRT507385 EN2 engrailed homeobox 2 2 4
MIRT509796 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT511813 HDGF heparin binding growth factor 2 2
MIRT513876 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT522966 IPO5 importin 5 2 2
MIRT523883 EPHA5 EPH receptor A5 2 4
MIRT529236 PORCN porcupine O-acyltransferase 2 2
MIRT535336 PFN1 profilin 1 2 2
MIRT537694 ELOVL6 ELOVL fatty acid elongase 6 2 2
MIRT538493 CLOCK clock circadian regulator 2 2
MIRT539138 ARHGAP35 Rho GTPase activating protein 35 2 2
MIRT541379 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT545017 PLP1 proteolipid protein 1 2 2
MIRT547733 KIF23 kinesin family member 23 2 4
MIRT549394 AKIRIN1 akirin 1 2 2
MIRT550371 MYLK3 myosin light chain kinase 3 2 2
MIRT551909 IGLON5 IgLON family member 5 2 2
MIRT552989 VAMP4 vesicle associated membrane protein 4 2 4
MIRT558237 EDA2R ectodysplasin A2 receptor 2 2
MIRT558919 CBX1 chromobox 1 2 2
MIRT559197 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT559510 ARID3B AT-rich interaction domain 3B 2 4
MIRT559610 AMER1 APC membrane recruitment protein 1 2 2
MIRT559768 URGCP-MRPS24 URGCP-MRPS24 readthrough 2 4
MIRT565855 NHS NHS actin remodeling regulator 2 2
MIRT569043 ZNF655 zinc finger protein 655 2 2
MIRT569153 SIGMAR1 sigma non-opioid intracellular receptor 1 2 2
MIRT569165 DMD dystrophin 2 2
MIRT569203 CASZ1 castor zinc finger 1 2 2
MIRT569263 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT569418 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT569430 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT569841 RGS5 regulator of G protein signaling 5 2 2
MIRT570231 NCAN neurocan 2 2
MIRT570518 SHH sonic hedgehog 2 2
MIRT575643 Mitf microphthalmia-associated transcription factor 2 3
MIRT576374 Runx1t1 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 2 2
MIRT576387 Fhl2 four and a half LIM domains 2 2 3
MIRT576412 Pla2g16 phospholipase A2, group XVI 2 2
MIRT606871 CHST11 carbohydrate sulfotransferase 11 2 4
MIRT606922 CDK15 cyclin dependent kinase 15 2 2
MIRT607024 ZEB1 zinc finger E-box binding homeobox 1 2 2
MIRT607080 MITF melanogenesis associated transcription factor 2 3
MIRT607613 TMEM130 transmembrane protein 130 2 4
MIRT607621 VSNL1 visinin like 1 2 2
MIRT607768 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 2 6
MIRT607880 SATB1 SATB homeobox 1 2 2
MIRT607940 SSX2 SSX family member 2 2 4
MIRT608011 CARNS1 carnosine synthase 1 2 4
MIRT608026 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608060 SSX2B SSX family member 2B 2 4
MIRT608123 TSC22D2 TSC22 domain family member 2 2 2
MIRT608130 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT608210 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT608554 SBK1 SH3 domain binding kinase 1 2 6
MIRT608584 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 4
MIRT608784 JAKMIP2 janus kinase and microtubule interacting protein 2 2 4
MIRT608790 CDH12 cadherin 12 2 2
MIRT608875 CNTF ciliary neurotrophic factor 2 6
MIRT608893 ZNF860 zinc finger protein 860 2 2
MIRT608911 NCDN neurochondrin 2 6
MIRT618020 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 2 2
MIRT625225 RPSAP58 ribosomal protein SA pseudogene 58 2 4
MIRT627332 TTLL7 tubulin tyrosine ligase like 7 2 2
MIRT628095 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT628698 ZNF548 zinc finger protein 548 2 2
MIRT629279 UNC13A unc-13 homolog A 2 2
MIRT630656 POU2F1 POU class 2 homeobox 1 2 2
MIRT634981 TNFAIP8 TNF alpha induced protein 8 2 2
MIRT641500 STC2 stanniocalcin 2 2 2
MIRT643507 ZNF28 zinc finger protein 28 2 2
MIRT646369 SLC22A6 solute carrier family 22 member 6 2 2
MIRT653985 SEMA6A semaphorin 6A 2 2
MIRT660037 C15orf61 chromosome 15 open reading frame 61 2 2
MIRT663223 PPY pancreatic polypeptide 2 2
MIRT683701 GFRA1 GDNF family receptor alpha 1 2 2
MIRT683921 SLC43A3 solute carrier family 43 member 3 2 2
MIRT684100 LHFP LHFPL tetraspan subfamily member 6 2 2
MIRT684223 FGF14 fibroblast growth factor 14 2 2
MIRT687466 NHSL2 NHS like 2 2 2
MIRT687694 LEPREL1 prolyl 3-hydroxylase 2 1 1
MIRT688254 FHL2 four and a half LIM domains 2 2 3
MIRT688850 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 2 2
MIRT693794 RHOG ras homolog family member G 2 2
MIRT701828 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT706391 PPID peptidylprolyl isomerase D 2 2
MIRT707197 SDK2 sidekick cell adhesion molecule 2 2 2
MIRT707387 SLC35F6 solute carrier family 35 member F6 2 2
MIRT707508 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT709807 AR androgen receptor 2 2
MIRT710360 CREB5 cAMP responsive element binding protein 5 2 2
MIRT715490 MAZ MYC associated zinc finger protein 2 2
MIRT719247 MS4A1 membrane spanning 4-domains A1 2 2
MIRT733067 CCL5 C-C motif chemokine ligand 5 3 0
MIRT736000 BRMS1 breast cancer metastasis suppressor 1 3 0
MIRT736216 CAPN2 calpain 2 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-147a Atorvastatin approved 60823 Microarray PC3 prostate cancer cells 23936432 2013 down-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-147a Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-147a Cisplatin 5460033 NSC119875 approved sensitive High Lung Adenocarcinoma cell line (A549)
hsa-miR-147a Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-147a Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-147a Gefitinib 123631 NSC715055 approved sensitive Low Colorectal Cancer cell line (HCT-116, SW480)
hsa-mir-147a Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-147a Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-147a Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-147a Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-147a Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-147a Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-147a Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-147a Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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