miRTarBase - #MIRT071876


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pre-miRNA Information
pre-miRNA hsa-mir-628   
Genomic Coordinates chr15: 55372940 - 55373034
Synonyms MIRN628, hsa-mir-628, MIR628
Description Homo sapiens miR-628 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-628-3p
Sequence 61| UCUAGUAAGAGUGGCAGUCGA |81
Evidence Experimental
Experiments Microarray
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 7 15 - 55372968 29233923 MiREDiBase
A-to-I 8 15 - 55372967 29233923 MiREDiBase
C-to-U 19 15 - 55372956 20591823 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26969715 1 COSMIC
COSN30123186 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1410255602 2 dbSNP
rs1401315366 3 dbSNP
rs1322836365 4 dbSNP
rs1158103480 8 dbSNP
rs1216611749 11 dbSNP
rs749619551 13 dbSNP
rs778157225 18 dbSNP
rs756600789 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BTF3L4   
Synonyms -
Description basic transcription factor 3 like 4
Transcript NM_001136497   
Other Transcripts NM_152265   
Expression
Putative miRNA Targets on BTF3L4
3'UTR of BTF3L4
(miRNA target sites are highlighted)		 
>BTF3L4|NM_001136497|3'UTR
   1 AAGTTTGGTTTTTGGAAGCTGGCATGGACTAGATTTAACAAATCAGCTATGTGGTTCCAAAGTTTTACAGACATGGAGAA
  81 CATCACCTGTTACTAGTTCAGTAATATAAATATTTTGTATATTAATAATGCTGTTTGTTCAGCATTTTTCGGTCATTTGA
 161 TTTTGCATTTTGCACTTCCTCCCAGGATATTTTTTTGGTCAAAATATGAAGTATTGGTGCAGTTTGAGGGTGTTTTGGTT
 241 TTTGATTCCTGGTTTTTTTGTTTTTTGTTTGGGGTATTTTTGGTGTATGTATGTTTATGTATGTGTGTGGGTATGTGTGT
 321 ATACAGTGGAGAGCAAATTGGAAAACAGTTCTATTTATCCTCCTCCCTCCCCAGTAGAAATAAAAAAAATCTTTACATTT
 401 GTTACTTTTCTTTTCCCCCCGTAAGACACAGAATTAATGGAAAGTGAGTATCTTGGATTTCAAATCTGAAGAGATTTTTA
 481 CCATTAGTGGTTTGATTTTAATTTGCTTGGTTAACTATCATATTTTTCATACACTTCTCTGGATTTAAAATATCTTGAGG
 561 TATTTTGCCACTGGCTTCATGCTGGAGTAATGGGTAACATATCTTTGGTATGGTTGCCTTAGATTAACTTACCTAGTCAG
 641 ACCCAGAAGAACTTCTTTTACTAGCTTGCTTCCTAAATGCCTTTTTTCCTCTCCTTTTGGTCTCCAAATGGCCTGGTCAG
 721 CTTTTGGTAATATTCTTCCTCATCTTCCACCTAGCTTGAGAAGGATGTTCTCCATATAGAGTTTAGCGAGTGCCTAATCC
 801 CTCCTTTTGTAAGATTTTGTTCCCTCAGCTTGAGGAACAACTTCATCTTCAACTTTTTATTTCTCCCTGATGTTACAGTT
 881 TGGTAGATTTCAAACTGGAATAGCTAGCATGTGCTTGCTAAATAATTTTATGCCAGCCTTATCCTGTATCCTAGCTGTTC
 961 TTAACAGCAGGTACAAAAATGCCTGTTTTTCAGCAAGGTTGAAATTGGGAATGTCCTTTTGAATCAGAAGAAAATAGGCC
1041 ATAGACTCATCTCCCAGCACAAATGGGCATTCTATGAAATGGTACTGGCCCTAGGAGGATTTCCTCAACCACTCTCCTAC
1121 TCTTGGCCTTGAACCTACCTCTGGGTTGGATCTTACTATTGTAGCTGCTCACTATACCCTCCTGCATGCTTAGAATAATG
1201 CTTTGAGGGGAGCACTGGTAAAACACAGTATTTATTTTTTTACCTCCTTTAAGAGGACTTGGAGGTAAGTTGCATTCATT
1281 CACTCAAGTTTCCCTCTTGCTGTCTAATAGAAGCTTACTTTTTGCTATATCAGCATTTGTTACAGCCAATATTTAAGGAC
1361 AAAATTTAGAAAATATATCATTTCCTGGCCCATCATCAAACTAATACAGCTTAACCTTGCAGCTACCAACTTTTGTGTCA
1441 AGCTAGATATCTTTATTTGATATCTAAGGTGCAAGACCAACAATATATTAAGAGATCTGTAGACATGAAGGCAAAGCTCT
1521 TGTATTTTTTTTCATCCAAACACCTCAATTTATTTTATAAATTCGTTCATTTTTCCTGTTATGTTTTATATAATATATGG
1601 ACTAAACAAAATAAAATAACAGTGCAAAAGAGGAGAATATTTCCTCTTGTGCTTTTCTTGATGTTGTGTACAGAATTTCC
1681 TTTTATATTATTCCTCTACCCTCCACCTGTAAATGAATGTTAGTGCAGTAATTGTTTGAAATAATGCCTCATCCAGTGTT
1761 AGGTCAGTAGCTCCACAGTCTACACAGTCCAGAATTCTTTCTCTAATTGTCCCAAAGGGGGACATTGTGGAGGCAGAGTT
1841 AGGGGGAACCACTTCAAGTGGTTAGGGACAGATAAATAATAGGCAGTATAGCACATGAAAGAAAACACACACTTGGAAGC
1921 CAGGAGACTTGTGTCCTAGTCAAAACTCTGGCATTATGTGACCTTGGACAGGTCATCTAACTACTCTGAAATTTATCATC
2001 AGTCAAATAAGATTTTATTCTGTTTTGTTTTGTTTGAGATGGGGATTTGCTCTTGTTGTCCAGGCCGAACTGCAATGTTG
2081 TGGTCTCGGCTGACTGCAACCTCCACCTCCCAGATTCAAGCGATTCTCCTGTCTCAGCCTCCACAGTAGCTGGGATTTTT
2161 TTTTTTTTTTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGCCCAGGCCGGTCTTGAATTCCTGTCCTCAGGTG
2241 ATTCATTTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTGCACCCAGCCCAAATGAGATGTTTCTAAA
2321 TCTAAAGTTTCTTCTGCTTCTGCATTTCTGTGAATCTCATTTGAAATTTTTCAGGGAAGGGATTTTATCATTTGTTCAGA
2401 GATGTCTTTATTTTTATTAATACCCATAAAACGTTTGTGTATTTGCTTCTTCCTCTTTCTCCTTTTGATCACATTTTAGC
2481 TACTTATCTAGAGGATCTCTGGCCAAGTATTCCCTTTTATTGTATTGATAACAATTCTTAATGGCTGGCCTCTCTTGTGT
2561 ACAATGAGCCAATATTCTTTTTTGTTCTATATTTTTGTATCTTCCCCTTTCCTGAACAAAGCATATTTAGAGTCTCAAAG
2641 AAATCCTCTCCACAAAGACATGTTCCTCCCTCTGGTGTGGGTAGACATAGGGTAAGAGTTTGGATGAAACTTTTGTAAAT
2721 TGTAGTGTTCTTGGCATAAATATGAATTAAATCTTTTTTTATATTTAAATAACTAGTTAAATATGTGCTTCTTACTAAGA
2801 TTAGGTATTTTTTGCCAAGATAACAATGATAAAAACATTTTGGGGGGGAAATTGACCTTAAAATTTTGGGATAATTCAAG
2881 AAATGTCTGCAGAAAATTGATTTATGATCTTAATTTTTGTGTTAGTCCTTTGAGGTTTTTTTGTTTTTGTTTTTGTTCTT
2961 TGTAAAGCGCCTTATCTGTTTTGGACAAGTCCAAAGTAAATGGTTGGGCTCTTATATCTGTTTTACCCTTATTTTTCCCA
3041 TTAAGTAATGGTTTAAGAATATATCAAGCACCTTAATTTGTTGTTAAGTAGCTAGTGCTTACAGGATTCCATTAAATTCA
3121 CTTTAATAAGCCTATGAAGTTCTTATGAAAAACCCATATCTGCGATATGTTTGATTTGTTTCTTTGTTTTAATTCAGTGT
3201 TTAACCCTAGGTATGCTACATACCCATAAATAAGATACCATGGTAAGAGATAGTATGTTATAGTGGGAAAAGCACAAGTT
3281 TTTAGATAGAGATCAATTCTGCTATCTACCCTTACATTGTAACCTTTCTGACAGGGCTGCTGCGGTGCACAACTTCGGGA
3361 GCCATCACTTATTTTTGTTGTGTTCCAGAAGGTGTCATTTTCATAGACTGCAGTGTGAATAGTGTCCTCCATTAATAATG
3441 CAATGATGGCCTTGCTCTCTGAGCCTCAGTTTTATCTATAAAATGGTACCTAGAAGAGTCATGATTTCTTAGAATCCCCT
3521 AAATTATTAAGGTGAAGGTAGAAGATGATTAAAGCGTGTTATCTCCTAAGCTATGGCTTAGATTTTCCGAAGCTCATGGT
3601 TCTAGGCACAGAAAGTCTCCATTCTACACTGCATTTCAACCTGTGTTGAACAACACTCCAGTTCAGCCTGTATTGCTATG
3681 CCACATAGAGTTTGCCTGAATTATTATAGCTTTCTTAATAGTTTTGTTTATGATCCACTCTCTCCAGCCCATTACACAGG
3761 AGCCAGCTACCTAAATTTCCTATCTGAGCATGTCCTTACATTTACTTCCAGCATACTATTCATTTGCCATAGTAGAGTAT
3841 TAAGATTATTTGATTTTCTTTTTACTTTCTCGTAGTGCCCAATGTGTAGTTTACTCAACATCATAATATGTAATGTTTTT
3921 CAACTACTTACTGTTGAATACAAAGTTATCTCATTTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agcugacGGUGAGAAUGAUCu 5'
                 |: ||:||||||| 
Target 5' agaagaaCTTCTTTTACTAGc 3'
 645 - 665 154.00 -11.70
2 
miRNA  3' agCUGACGGU-GAGAAUGAUCu 5'
            ||   :|| || ||||||| 
Target 5' gaGAACATCACCTGTTACTAGt 3'
 76 - 97 151.00 -12.10
3 
miRNA  3' agcugACGGUGAGAAUGAUcu 5'
               ||:  :||||||||  
Target 5' aaataTGTGCTTCTTACTAag 3'
 2779 - 2799 136.00 -10.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31520806 13 COSMIC
COSN26669233 37 COSMIC
COSN30192052 45 COSMIC
COSN31507724 58 COSMIC
COSN26968164 63 COSMIC
COSN31592594 82 COSMIC
COSN1448689 105 COSMIC
COSN26668369 118 COSMIC
COSN31528808 121 COSMIC
COSN30163637 178 COSMIC
COSN1448690 270 COSMIC
COSN31567082 284 COSMIC
COSN31606765 385 COSMIC
COSN31592985 390 COSMIC
COSN31481343 422 COSMIC
COSN31487829 533 COSMIC
COSN1448691 628 COSMIC
COSN22404717 956 COSMIC
COSN32065417 984 COSMIC
COSN16435847 1050 COSMIC
COSN26814492 1135 COSMIC
COSN31484329 1305 COSMIC
COSN31530985 1329 COSMIC
COSN1448692 1381 COSMIC
COSN26229058 1415 COSMIC
COSN31519676 1498 COSMIC
COSN31584893 1551 COSMIC
COSN31549231 1565 COSMIC
COSN30540679 1626 COSMIC
COSN26602744 1669 COSMIC
COSN15030938 1883 COSMIC
COSN16013271 2631 COSMIC
COSN19581704 2993 COSMIC
COSN27105476 3273 COSMIC
COSN4750840 3393 COSMIC
COSN5168800 3731 COSMIC
COSN1448693 3837 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1304552313 10 dbSNP
rs977113891 14 dbSNP
rs551776577 20 dbSNP
rs569569537 22 dbSNP
rs1358126485 24 dbSNP
rs1410557759 24 dbSNP
rs765161559 27 dbSNP
rs371859269 30 dbSNP
rs1359535173 31 dbSNP
rs1441163369 32 dbSNP
rs763040071 39 dbSNP
rs1310837603 42 dbSNP
rs1373910598 49 dbSNP
rs1411871266 50 dbSNP
rs1177182482 60 dbSNP
rs1439426032 67 dbSNP
rs1219796731 74 dbSNP
rs1257277057 82 dbSNP
rs536957423 83 dbSNP
rs1482560845 84 dbSNP
rs1255494664 86 dbSNP
rs1216522489 97 dbSNP
rs1356154854 98 dbSNP
rs1325764954 99 dbSNP
rs1201809157 104 dbSNP
rs1054254713 106 dbSNP
rs758009244 108 dbSNP
rs1314590799 125 dbSNP
rs1394283984 126 dbSNP
rs1447847280 135 dbSNP
rs1288955206 141 dbSNP
rs1358264712 148 dbSNP
rs948672130 151 dbSNP
rs1424891610 152 dbSNP
rs1045052353 160 dbSNP
rs779564034 170 dbSNP
rs1189970925 175 dbSNP
rs1195557848 178 dbSNP
rs1240790009 189 dbSNP
rs111838633 198 dbSNP
rs1194519534 201 dbSNP
rs59771676 208 dbSNP
rs1216234939 213 dbSNP
rs1360427965 220 dbSNP
rs1177804965 222 dbSNP
rs573500411 226 dbSNP
rs534849318 227 dbSNP
rs1003558334 230 dbSNP
rs1047141628 231 dbSNP
rs1175028293 233 dbSNP
rs1401732883 249 dbSNP
rs1388703580 253 dbSNP
rs552780156 268 dbSNP
rs1297038791 274 dbSNP
rs1405183646 283 dbSNP
rs887192621 286 dbSNP
rs1165389776 288 dbSNP
rs142532129 299 dbSNP
rs1368226752 300 dbSNP
rs1172082060 303 dbSNP
rs1017549605 308 dbSNP
rs1325650676 309 dbSNP
rs544629538 316 dbSNP
rs748170785 320 dbSNP
rs769918138 322 dbSNP
rs3015303 329 dbSNP
rs961753343 330 dbSNP
rs1488057777 333 dbSNP
rs1360379415 339 dbSNP
rs1220468958 352 dbSNP
rs977061247 354 dbSNP
rs1277036101 356 dbSNP
rs1223544693 358 dbSNP
rs1332497314 362 dbSNP
rs1343509972 363 dbSNP
rs1385858552 373 dbSNP
rs924362741 378 dbSNP
rs1262636376 381 dbSNP
rs576351755 382 dbSNP
rs575349605 383 dbSNP
rs1170088660 390 dbSNP
rs1422032619 390 dbSNP
rs184615291 392 dbSNP
rs1282352080 397 dbSNP
rs9662305 398 dbSNP
rs1432816956 400 dbSNP
rs1238568536 403 dbSNP
rs1046031754 406 dbSNP
rs1200555416 410 dbSNP
rs1456405003 411 dbSNP
rs529449626 411 dbSNP
rs1346571233 415 dbSNP
rs939293774 415 dbSNP
rs190761468 421 dbSNP
rs114677984 422 dbSNP
rs1005664776 423 dbSNP
rs1454837458 427 dbSNP
rs1156446712 444 dbSNP
rs748594865 446 dbSNP
rs770022522 449 dbSNP
rs1038472396 450 dbSNP
rs755031921 464 dbSNP
rs997034418 467 dbSNP
rs879523048 469 dbSNP
rs1381098981 475 dbSNP
rs1405761931 475 dbSNP
rs533472006 486 dbSNP
rs778241240 510 dbSNP
rs3015302 516 dbSNP
rs1188236805 517 dbSNP
rs998467233 518 dbSNP
rs1031325163 523 dbSNP
rs748398824 532 dbSNP
rs1199326637 533 dbSNP
rs957098591 535 dbSNP
rs1287668322 538 dbSNP
rs772240775 549 dbSNP
rs1375207393 554 dbSNP
rs1279322412 560 dbSNP
rs1288897096 571 dbSNP
rs1449403426 574 dbSNP
rs1342727994 579 dbSNP
rs1022725505 583 dbSNP
rs1336444252 595 dbSNP
rs970260594 606 dbSNP
rs1160735425 607 dbSNP
rs1241190660 611 dbSNP
rs981300979 612 dbSNP
rs1449144076 624 dbSNP
rs1473742983 632 dbSNP
rs1278037498 635 dbSNP
rs1235612762 640 dbSNP
rs1350169619 645 dbSNP
rs569705728 645 dbSNP
rs1186262144 656 dbSNP
rs928533935 666 dbSNP
rs1223478701 670 dbSNP
rs1214072448 672 dbSNP
rs764302482 678 dbSNP
rs1352519219 682 dbSNP
rs530863514 682 dbSNP
rs868579579 683 dbSNP
rs1294456614 685 dbSNP
rs1489957396 687 dbSNP
rs548845825 688 dbSNP
rs1222413841 692 dbSNP
rs929237154 694 dbSNP
rs982762864 695 dbSNP
rs1341275113 698 dbSNP
rs908521291 701 dbSNP
rs1420382933 713 dbSNP
rs1344767391 722 dbSNP
rs941384405 726 dbSNP
rs1406835497 731 dbSNP
rs1362685806 737 dbSNP
rs1444904704 743 dbSNP
rs1162639540 745 dbSNP
rs1290097231 747 dbSNP
rs1425231144 754 dbSNP
rs1190805591 761 dbSNP
rs1487770446 768 dbSNP
rs1038829014 771 dbSNP
rs1223273531 774 dbSNP
rs1383215070 777 dbSNP
rs1453741149 785 dbSNP
rs567259150 788 dbSNP
rs773004010 789 dbSNP
rs1298684408 796 dbSNP
rs932813136 799 dbSNP
rs534485590 800 dbSNP
rs999083988 819 dbSNP
rs1031900955 822 dbSNP
rs181688070 823 dbSNP
rs1326991405 836 dbSNP
rs1347960215 836 dbSNP
rs1324967664 839 dbSNP
rs1466079741 851 dbSNP
rs1011248754 854 dbSNP
rs1247062037 867 dbSNP
rs1317350218 873 dbSNP
rs1484229803 877 dbSNP
rs1357741362 884 dbSNP
rs571212903 906 dbSNP
rs1252429730 908 dbSNP
rs1192627682 911 dbSNP
rs1476837068 912 dbSNP
rs538714732 916 dbSNP
rs1213391971 918 dbSNP
rs1023096377 929 dbSNP
rs969872374 937 dbSNP
rs1197266026 940 dbSNP
rs981673336 941 dbSNP
rs1302052566 955 dbSNP
rs138643823 967 dbSNP
rs950549659 972 dbSNP
rs774575250 976 dbSNP
rs575289576 977 dbSNP
rs1329287654 982 dbSNP
rs974141938 986 dbSNP
rs1359304790 995 dbSNP
rs1177527561 997 dbSNP
rs976904696 1002 dbSNP
rs932783312 1008 dbSNP
rs1193432897 1009 dbSNP
rs1440738943 1014 dbSNP
rs1051184886 1022 dbSNP
rs1177378034 1024 dbSNP
rs1443812340 1031 dbSNP
rs1256668564 1033 dbSNP
rs1170826288 1036 dbSNP
rs1374564149 1037 dbSNP
rs752536497 1043 dbSNP
rs1310698649 1045 dbSNP
rs1279931218 1046 dbSNP
rs1051986 1047 dbSNP
rs891268917 1054 dbSNP
rs1460441950 1060 dbSNP
rs934841824 1061 dbSNP
rs1053265126 1063 dbSNP
rs893389810 1064 dbSNP
rs1011656240 1070 dbSNP
rs542678048 1075 dbSNP
rs1374286342 1077 dbSNP
rs1158921942 1092 dbSNP
rs1421125090 1093 dbSNP
rs1382621094 1107 dbSNP
rs905591164 1113 dbSNP
rs1002602776 1117 dbSNP
rs1484761106 1121 dbSNP
rs1256884303 1128 dbSNP
rs1338976322 1129 dbSNP
rs1217711276 1135 dbSNP
rs1356042647 1140 dbSNP
rs1035452857 1145 dbSNP
rs375325485 1146 dbSNP
rs1314814601 1151 dbSNP
rs556061364 1157 dbSNP
rs1004722867 1159 dbSNP
rs1016188631 1163 dbSNP
rs963362355 1168 dbSNP
rs1401467073 1173 dbSNP
rs558246715 1175 dbSNP
rs1251188732 1184 dbSNP
rs1453546448 1202 dbSNP
rs1323631606 1204 dbSNP
rs1167600044 1208 dbSNP
rs1474512055 1213 dbSNP
rs1417260082 1222 dbSNP
rs1343339377 1231 dbSNP
rs1203544376 1235 dbSNP
rs199776204 1244 dbSNP
rs1489409239 1251 dbSNP
rs536315899 1257 dbSNP
rs559908098 1273 dbSNP
rs954201773 1282 dbSNP
rs986817505 1286 dbSNP
rs1242600938 1288 dbSNP
rs912652848 1289 dbSNP
rs1278292262 1295 dbSNP
rs1219881370 1304 dbSNP
rs934789751 1314 dbSNP
rs187167828 1318 dbSNP
rs140307585 1322 dbSNP
rs947691521 1324 dbSNP
rs1391988970 1325 dbSNP
rs1045061425 1328 dbSNP
rs905498829 1330 dbSNP
rs1178736229 1331 dbSNP
rs1394332316 1336 dbSNP
rs1171520217 1346 dbSNP
rs1403959778 1347 dbSNP
rs537372244 1361 dbSNP
rs1371381601 1368 dbSNP
rs1002548350 1373 dbSNP
rs768693775 1374 dbSNP
rs373071776 1378 dbSNP
rs1211528459 1379 dbSNP
rs1467994879 1380 dbSNP
rs1258587015 1391 dbSNP
rs1200430945 1396 dbSNP
rs1336950797 1400 dbSNP
rs1233529430 1402 dbSNP
rs886230352 1402 dbSNP
rs1332411301 1404 dbSNP
rs1004712910 1416 dbSNP
rs369185470 1431 dbSNP
rs759585416 1436 dbSNP
rs1370671585 1438 dbSNP
rs963609092 1439 dbSNP
rs1278155295 1440 dbSNP
rs1394502755 1442 dbSNP
rs1346643338 1455 dbSNP
rs1167338530 1460 dbSNP
rs1466755543 1472 dbSNP
rs996083007 1473 dbSNP
rs1225870153 1477 dbSNP
rs1260755647 1484 dbSNP
rs1453625319 1486 dbSNP
rs1029336954 1500 dbSNP
rs189396181 1502 dbSNP
rs1216139761 1506 dbSNP
rs986765256 1512 dbSNP
rs912643076 1517 dbSNP
rs1346727267 1519 dbSNP
rs1185662565 1523 dbSNP
rs1277803351 1524 dbSNP
rs568721617 1525 dbSNP
rs956158500 1525 dbSNP
rs914723505 1535 dbSNP
rs558896481 1538 dbSNP
rs1334443793 1549 dbSNP
rs1328296115 1559 dbSNP
rs866423912 1565 dbSNP
rs369929802 1566 dbSNP
rs1172071921 1569 dbSNP
rs548983099 1579 dbSNP
rs554568087 1583 dbSNP
rs968151950 1589 dbSNP
rs938326739 1591 dbSNP
rs1056854383 1601 dbSNP
rs764832544 1603 dbSNP
rs1443686470 1605 dbSNP
rs1347144461 1608 dbSNP
rs767508674 1608 dbSNP
rs980459554 1628 dbSNP
rs1037871999 1635 dbSNP
rs898966641 1638 dbSNP
rs926558495 1640 dbSNP
rs1298027269 1644 dbSNP
rs150207448 1647 dbSNP
rs1407372509 1650 dbSNP
rs1281918896 1651 dbSNP
rs991969262 1667 dbSNP
rs534313860 1669 dbSNP
rs1299844377 1673 dbSNP
rs1028868717 1686 dbSNP
rs908362001 1691 dbSNP
rs940782514 1695 dbSNP
rs1406955896 1708 dbSNP
rs1163826033 1710 dbSNP
rs1473732194 1726 dbSNP
rs1036371540 1729 dbSNP
rs1223812859 1735 dbSNP
rs1415022657 1738 dbSNP
rs920683905 1746 dbSNP
rs1186535785 1747 dbSNP
rs890410632 1751 dbSNP
rs118021258 1770 dbSNP
rs1050434522 1775 dbSNP
rs1314811135 1802 dbSNP
rs1215400829 1806 dbSNP
rs1019601587 1826 dbSNP
rs1213173269 1826 dbSNP
rs1292311984 1828 dbSNP
rs1445686662 1839 dbSNP
rs889378934 1846 dbSNP
rs1284001625 1849 dbSNP
rs1337509470 1851 dbSNP
rs1490775087 1853 dbSNP
rs1291538421 1875 dbSNP
rs1232705904 1877 dbSNP
rs1341174584 1878 dbSNP
rs1272192270 1881 dbSNP
rs113566681 1884 dbSNP
rs1268013853 1896 dbSNP
rs1040565727 1904 dbSNP
rs892601366 1905 dbSNP
rs1009729232 1907 dbSNP
rs988828512 1908 dbSNP
rs1177804712 1920 dbSNP
rs1410224516 1927 dbSNP
rs1163622507 1929 dbSNP
rs1477885608 1930 dbSNP
rs1425123653 1937 dbSNP
rs763655352 1944 dbSNP
rs1022136652 1948 dbSNP
rs1386314135 1956 dbSNP
rs903582397 1963 dbSNP
rs1271870716 1965 dbSNP
rs980718502 1972 dbSNP
rs927562052 1975 dbSNP
rs938945601 1978 dbSNP
rs1213036297 1980 dbSNP
rs1361465829 1982 dbSNP
rs1002308789 1984 dbSNP
rs992477562 1985 dbSNP
rs1033323761 1996 dbSNP
rs907516666 1999 dbSNP
rs1368476854 2013 dbSNP
rs1349759026 2018 dbSNP
rs940349040 2019 dbSNP
rs960927711 2022 dbSNP
rs1176300003 2053 dbSNP
rs1037419511 2055 dbSNP
rs571414771 2059 dbSNP
rs1167631296 2064 dbSNP
rs1409031561 2065 dbSNP
rs1425381837 2067 dbSNP
rs991998923 2068 dbSNP
rs750762497 2076 dbSNP
rs1251504536 2083 dbSNP
rs369262413 2088 dbSNP
rs961229414 2089 dbSNP
rs1234690343 2100 dbSNP
rs973876305 2102 dbSNP
rs1202470098 2103 dbSNP
rs1307168623 2104 dbSNP
rs1279655083 2118 dbSNP
rs868517501 2122 dbSNP
rs930714508 2123 dbSNP
rs1302332763 2124 dbSNP
rs1447440155 2127 dbSNP
rs1206577734 2155 dbSNP
rs201164604 2155 dbSNP
rs1250423412 2156 dbSNP
rs1491539890 2156 dbSNP
rs3991108 2156 dbSNP
rs57151047 2156 dbSNP
rs577214328 2156 dbSNP
rs75007078 2156 dbSNP
rs781741682 2156 dbSNP
rs1361332764 2157 dbSNP
rs78827860 2158 dbSNP
rs1420232460 2163 dbSNP
rs1243448748 2166 dbSNP
rs1433339225 2172 dbSNP
rs1410753189 2174 dbSNP
rs902661564 2175 dbSNP
rs7543306 2176 dbSNP
rs1008665489 2177 dbSNP
rs1206505726 2180 dbSNP
rs1234745517 2181 dbSNP
rs1479692281 2183 dbSNP
rs1178276423 2186 dbSNP
rs1243929961 2191 dbSNP
rs1446842304 2195 dbSNP
rs1484780401 2203 dbSNP
rs1279371032 2208 dbSNP
rs113260144 2209 dbSNP
rs1318469389 2211 dbSNP
rs377070965 2212 dbSNP
rs1411081496 2213 dbSNP
rs181312052 2216 dbSNP
rs1030890532 2217 dbSNP
rs1412557063 2218 dbSNP
rs1445312903 2231 dbSNP
rs1374426869 2233 dbSNP
rs910514120 2239 dbSNP
rs540247347 2245 dbSNP
rs1337019117 2246 dbSNP
rs568989555 2250 dbSNP
rs1384482422 2254 dbSNP
rs1157631168 2255 dbSNP
rs1419001192 2262 dbSNP
rs373487735 2263 dbSNP
rs149348732 2266 dbSNP
rs1283423441 2267 dbSNP
rs945549159 2271 dbSNP
rs1010656687 2276 dbSNP
rs1043888989 2278 dbSNP
rs903615465 2282 dbSNP
rs1001939939 2285 dbSNP
rs1339831382 2291 dbSNP
rs969243371 2294 dbSNP
rs1258732043 2296 dbSNP
rs1270730733 2299 dbSNP
rs1033769060 2301 dbSNP
rs1316152652 2313 dbSNP
rs896119523 2316 dbSNP
rs756495328 2317 dbSNP
rs766783185 2321 dbSNP
rs980283792 2341 dbSNP
rs1034543692 2345 dbSNP
rs1387677657 2356 dbSNP
rs1015506352 2360 dbSNP
rs34279088 2372 dbSNP
rs1453701468 2375 dbSNP
rs1395803771 2379 dbSNP
rs1171264780 2382 dbSNP
rs1185680306 2383 dbSNP
rs1167692313 2385 dbSNP
rs185184641 2401 dbSNP
rs1237325090 2407 dbSNP
rs1459985877 2410 dbSNP
rs1475913313 2423 dbSNP
rs1194246390 2434 dbSNP
rs144698589 2440 dbSNP
rs960216202 2447 dbSNP
rs1430451498 2453 dbSNP
rs961259714 2457 dbSNP
rs1188803125 2468 dbSNP
rs541702418 2487 dbSNP
rs74403700 2490 dbSNP
rs1211721551 2498 dbSNP
rs961665345 2505 dbSNP
rs1176586482 2509 dbSNP
rs973515731 2510 dbSNP
rs952231209 2515 dbSNP
rs755546368 2518 dbSNP
rs1333082590 2525 dbSNP
rs1293916298 2528 dbSNP
rs144056281 2535 dbSNP
rs1372152680 2536 dbSNP
rs1328583651 2539 dbSNP
rs1050250815 2542 dbSNP
rs1393832143 2545 dbSNP
rs77148994 2546 dbSNP
rs944726562 2556 dbSNP
rs1052265418 2558 dbSNP
rs1169974418 2559 dbSNP
rs1224010203 2561 dbSNP
rs892423230 2564 dbSNP
rs1254636395 2570 dbSNP
rs1191746024 2572 dbSNP
rs1467925272 2573 dbSNP
rs1250632534 2576 dbSNP
rs1196990375 2578 dbSNP
rs1010231929 2590 dbSNP
rs1250459981 2594 dbSNP
rs1234552194 2598 dbSNP
rs1284074313 2600 dbSNP
rs1043481380 2605 dbSNP
rs1325741629 2609 dbSNP
rs1305995253 2612 dbSNP
rs1198960856 2617 dbSNP
rs1370839423 2618 dbSNP
rs976061091 2621 dbSNP
rs1329662837 2623 dbSNP
rs1393259367 2624 dbSNP
rs1394400050 2626 dbSNP
rs1297880349 2635 dbSNP
rs1278098848 2637 dbSNP
rs748191639 2639 dbSNP
rs563410030 2645 dbSNP
rs1002003201 2646 dbSNP
rs1261453010 2651 dbSNP
rs1477804696 2657 dbSNP
rs1034449426 2658 dbSNP
rs945583294 2659 dbSNP
rs1044304543 2660 dbSNP
rs530935592 2663 dbSNP
rs1014432409 2672 dbSNP
rs937766695 2675 dbSNP
rs542571370 2677 dbSNP
rs896238245 2680 dbSNP
rs1486413072 2688 dbSNP
rs1430869765 2689 dbSNP
rs1282936002 2691 dbSNP
rs114307972 2693 dbSNP
rs973079576 2700 dbSNP
rs1372715927 2705 dbSNP
rs528521494 2712 dbSNP
rs1241793558 2714 dbSNP
rs897095662 2723 dbSNP
rs1385181308 2725 dbSNP
rs995395779 2734 dbSNP
rs1027241081 2740 dbSNP
rs1377452268 2743 dbSNP
rs1311256707 2754 dbSNP
rs1433921386 2757 dbSNP
rs1385381869 2758 dbSNP
rs1359656105 2764 dbSNP
rs1387516200 2768 dbSNP
rs911645458 2770 dbSNP
rs1362719562 2771 dbSNP
rs1187982230 2783 dbSNP
rs1475999641 2784 dbSNP
rs1285050666 2791 dbSNP
rs1347470615 2796 dbSNP
rs1231109654 2808 dbSNP
rs747303659 2810 dbSNP
rs770818897 2817 dbSNP
rs1207415316 2831 dbSNP
rs1349092017 2836 dbSNP
rs1007130710 2838 dbSNP
rs1234019294 2840 dbSNP
rs1291724604 2842 dbSNP
rs913808477 2842 dbSNP
rs1225650902 2843 dbSNP
rs546848586 2844 dbSNP
rs1319970878 2845 dbSNP
rs966102717 2847 dbSNP
rs1488162199 2849 dbSNP
rs1398899098 2857 dbSNP
rs1384105310 2861 dbSNP
rs1223902875 2889 dbSNP
rs1462608582 2889 dbSNP
rs781199465 2910 dbSNP
rs976095505 2926 dbSNP
rs1186869680 2936 dbSNP
rs1271604593 2936 dbSNP
rs1475499942 2936 dbSNP
rs1243068752 2937 dbSNP
rs745783309 2938 dbSNP
rs966956305 2944 dbSNP
rs116025530 2950 dbSNP
rs1268103527 2951 dbSNP
rs904496481 2953 dbSNP
rs1337129899 2955 dbSNP
rs3015300 2959 dbSNP
rs1470995417 2963 dbSNP
rs1227969804 2969 dbSNP
rs938232942 2970 dbSNP
rs1428428397 2976 dbSNP
rs1055684532 2978 dbSNP
rs917695512 2992 dbSNP
rs1156441967 2993 dbSNP
rs1014422500 2995 dbSNP
rs1391661564 3001 dbSNP
rs1163393028 3005 dbSNP
rs1424987172 3010 dbSNP
rs1410207487 3017 dbSNP
rs756874668 3019 dbSNP
rs1015128427 3020 dbSNP
rs1474663233 3030 dbSNP
rs949114908 3031 dbSNP
rs1036657684 3032 dbSNP
rs1470173416 3033 dbSNP
rs762398211 3038 dbSNP
rs896791869 3050 dbSNP
rs1444710985 3062 dbSNP
rs550815618 3064 dbSNP
rs140871352 3066 dbSNP
rs1247127700 3071 dbSNP
rs1275444840 3072 dbSNP
rs1213015865 3073 dbSNP
rs953122925 3074 dbSNP
rs1303793006 3075 dbSNP
rs541468348 3078 dbSNP
rs1048343140 3084 dbSNP
rs985800324 3091 dbSNP
rs889680315 3093 dbSNP
rs1354908465 3096 dbSNP
rs1018642453 3098 dbSNP
rs1442353375 3099 dbSNP
rs1355758917 3100 dbSNP
rs375628027 3104 dbSNP
rs1326520608 3115 dbSNP
rs1438982254 3117 dbSNP
rs1176400022 3118 dbSNP
rs1019428802 3125 dbSNP
rs536364298 3135 dbSNP
rs751149265 3137 dbSNP
rs1389961075 3145 dbSNP
rs1237146333 3146 dbSNP
rs997564388 3147 dbSNP
rs1174598385 3149 dbSNP
rs1455988511 3153 dbSNP
rs1393845760 3156 dbSNP
rs1445041697 3157 dbSNP
rs3015299 3164 dbSNP
rs1202705210 3166 dbSNP
rs1366468590 3169 dbSNP
rs966736666 3172 dbSNP
rs1482820688 3175 dbSNP
rs1457405493 3179 dbSNP
rs1212705410 3184 dbSNP
rs566461118 3196 dbSNP
rs925582264 3200 dbSNP
rs1397321538 3202 dbSNP
rs1300575046 3206 dbSNP
rs959877797 3217 dbSNP
rs773856204 3219 dbSNP
rs1329602058 3226 dbSNP
rs564549452 3227 dbSNP
rs533581488 3230 dbSNP
rs1277203923 3235 dbSNP
rs1376379099 3250 dbSNP
rs918045850 3257 dbSNP
rs141546923 3264 dbSNP
rs768107379 3268 dbSNP
rs1314296206 3272 dbSNP
rs41294472 3288 dbSNP
rs1357775032 3300 dbSNP
rs11205924 3305 dbSNP
rs1420138108 3307 dbSNP
rs1048520353 3310 dbSNP
rs1410280355 3312 dbSNP
rs926560878 3324 dbSNP
rs1472405286 3333 dbSNP
rs889721874 3334 dbSNP
rs868428371 3337 dbSNP
rs1255128786 3340 dbSNP
rs1216428383 3342 dbSNP
rs189938064 3344 dbSNP
rs377112412 3345 dbSNP
rs895888497 3346 dbSNP
rs900975062 3357 dbSNP
rs766729864 3358 dbSNP
rs1256843569 3363 dbSNP
rs950135468 3406 dbSNP
rs1250213178 3407 dbSNP
rs1461522829 3409 dbSNP
rs1185046137 3411 dbSNP
rs1253890149 3420 dbSNP
rs1036466532 3421 dbSNP
rs1422969327 3422 dbSNP
rs575472253 3430 dbSNP
rs897958918 3432 dbSNP
rs1454787139 3439 dbSNP
rs182403827 3442 dbSNP
rs1192532695 3447 dbSNP
rs1157548896 3453 dbSNP
rs1456825329 3460 dbSNP
rs1021090075 3462 dbSNP
rs1028319497 3469 dbSNP
rs114695200 3484 dbSNP
rs1056644 3487 dbSNP
rs1399632758 3493 dbSNP
rs1470456523 3494 dbSNP
rs759979107 3507 dbSNP
rs1000902898 3511 dbSNP
rs573172741 3514 dbSNP
rs1334994361 3522 dbSNP
rs1018590078 3529 dbSNP
rs1231091630 3536 dbSNP
rs959650730 3542 dbSNP
rs150742420 3548 dbSNP
rs3015298 3556 dbSNP
rs532450617 3557 dbSNP
rs41294474 3562 dbSNP
rs1395326782 3563 dbSNP
rs1463938656 3565 dbSNP
rs1217303960 3578 dbSNP
rs979327073 3581 dbSNP
rs758384629 3583 dbSNP
rs78818801 3586 dbSNP
rs1323610983 3589 dbSNP
rs937939176 3590 dbSNP
rs991468827 3594 dbSNP
rs1245957067 3597 dbSNP
rs529962910 3599 dbSNP
rs1468816405 3605 dbSNP
rs1482824300 3609 dbSNP
rs950044452 3610 dbSNP
rs1207515238 3622 dbSNP
rs1205457156 3623 dbSNP
rs1487855678 3628 dbSNP
rs548246706 3632 dbSNP
rs910840385 3640 dbSNP
rs1229143406 3642 dbSNP
rs370514680 3644 dbSNP
rs757615358 3651 dbSNP
rs897949221 3652 dbSNP
rs779261343 3654 dbSNP
rs114927135 3655 dbSNP
rs551012470 3665 dbSNP
rs945887234 3673 dbSNP
rs1049257000 3681 dbSNP
rs889346613 3684 dbSNP
rs1423021344 3685 dbSNP
rs1480765335 3692 dbSNP
rs1390088449 3707 dbSNP
rs1041560414 3712 dbSNP
rs1357593488 3716 dbSNP
rs1019166396 3724 dbSNP
rs1465712041 3735 dbSNP
rs1454684091 3738 dbSNP
rs1289860577 3741 dbSNP
rs901480413 3745 dbSNP
rs1196638308 3758 dbSNP
rs370959807 3764 dbSNP
rs1298064218 3771 dbSNP
rs1197194344 3772 dbSNP
rs1481840297 3773 dbSNP
rs1272974193 3786 dbSNP
rs1204943463 3791 dbSNP
rs551909653 3793 dbSNP
rs571563996 3795 dbSNP
rs186391041 3800 dbSNP
rs557277057 3801 dbSNP
rs1330600737 3806 dbSNP
rs902611144 3812 dbSNP
rs1307723384 3817 dbSNP
rs751825394 3821 dbSNP
rs967860357 3830 dbSNP
rs569075604 3837 dbSNP
rs1001317092 3838 dbSNP
rs1001096125 3843 dbSNP
rs1307623743 3859 dbSNP
rs1435156037 3861 dbSNP
rs1377035974 3866 dbSNP
rs1032351509 3867 dbSNP
rs1465426992 3869 dbSNP
rs959212886 3870 dbSNP
rs895170748 3872 dbSNP
rs192496989 3873 dbSNP
rs917848392 3884 dbSNP
rs1262325964 3891 dbSNP
rs1188201549 3895 dbSNP
rs757607168 3897 dbSNP
rs1215809756 3899 dbSNP
rs1269459344 3903 dbSNP
rs1281082647 3916 dbSNP
rs1199260125 3924 dbSNP
rs1261423049 3930 dbSNP
rs971384945 3932 dbSNP
rs972123638 3934 dbSNP
rs1288026900 3948 dbSNP
rs536478674 3949 dbSNP
rs1357139978 3950 dbSNP
rs1331894391 3952 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000489308.2 | 3UTR | ACAUGGAGAACAUCACCUGUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000489308.2 | 3UTR | ACAUGGAGAACAUCACCUGUUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.55 2.6e-2 0.527 3.2e-2 13 Click to see details
GSE26953 Aortic valvular endothelial cells 0.295 8.1e-2 0.317 6.6e-2 24 Click to see details
GSE32688 Pancreatic cancer 0.18 1.6e-1 0.190 1.5e-1 32 Click to see details
GSE27834 Pluripotent stem cells 0.251 1.7e-1 0.212 2.2e-1 16 Click to see details
GSE38226 Liver fibrosis 0.166 2.4e-1 0.327 7.4e-2 21 Click to see details
GSE19350 CNS germ cell tumors 0.226 2.4e-1 0.392 1.0e-1 12 Click to see details
GSE28544 Breast cancer -0.132 2.7e-1 -0.111 3.0e-1 24 Click to see details
GSE21687 Ependynoma primary tumors -0.05 3.5e-1 -0.064 3.1e-1 64 Click to see details
GSE14794 Lymphoblastoid cells 0.033 3.8e-1 0.022 4.2e-1 90 Click to see details
GSE17306 Multiple myeloma -0.037 4.0e-1 -0.005 4.9e-1 49 Click to see details
GSE42095 Differentiated embryonic stem cells -0.03 4.5e-1 -0.048 4.1e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.361 0.03 -0.355 0.03 28 Click to see details
PCPG 0.988 0.05 1.000 0.5 3 Click to see details
UCEC -0.396 0.05 -0.391 0.05 18 Click to see details
BLCA 0.39 0.06 0.395 0.06 17 Click to see details
THCA 0.158 0.12 0.227 0.04 58 Click to see details
ESCA 0.369 0.13 0.527 0.05 11 Click to see details
HNSC 0.148 0.2 0.211 0.11 35 Click to see details
KIRP 0.139 0.24 0.056 0.39 29 Click to see details
LUSC -0.121 0.24 -0.027 0.44 35 Click to see details
CHOL 0.294 0.26 0.571 0.09 7 Click to see details
PAAD 0.441 0.28 0.200 0.4 4 Click to see details
BRCA 0.095 0.3 0.100 0.29 34 Click to see details
CESC -0.533 0.32 -0.500 0.33 3 Click to see details
LIHC -0.061 0.34 -0.140 0.17 49 Click to see details
PRAD -0.066 0.35 -0.060 0.36 36 Click to see details
KICH -0.063 0.39 -0.084 0.36 22 Click to see details
KIRC -0.037 0.41 -0.073 0.33 40 Click to see details
LUAD -0.028 0.47 -0.176 0.31 10 Click to see details
LUAD -0.028 0.47 -0.176 0.31 10 Click to see details
27 hsa-miR-628-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT039584 CDC14A cell division cycle 14A 1 1
MIRT039585 AGO1 argonaute 1, RISC catalytic component 2 3
MIRT039586 TGFBRAP1 transforming growth factor beta receptor associated protein 1 1 1
MIRT039587 LRP6 LDL receptor related protein 6 1 1
MIRT071876 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT097443 JMY junction mediating and regulatory protein, p53 cofactor 2 4
MIRT100100 ABT1 activator of basal transcription 1 2 8
MIRT147692 CBX4 chromobox 4 2 2
MIRT408248 PURA purine rich element binding protein A 2 2
MIRT442047 LRAT lecithin retinol acyltransferase 2 2
MIRT444412 RAB3IP RAB3A interacting protein 2 2
MIRT452599 REPIN1 replication initiator 1 2 2
MIRT469515 RBFOX2 RNA binding protein, fox-1 homolog 2 2 8
MIRT498192 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT500151 CREBBP CREB binding protein 2 2
MIRT507319 FAM60A SIN3-HDAC complex associated factor 2 6
MIRT508343 ZNF273 zinc finger protein 273 2 6
MIRT520480 TRIM13 tripartite motif containing 13 2 2
MIRT522461 MMP16 matrix metallopeptidase 16 2 4
MIRT547116 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548675 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT553756 TARBP2 TARBP2, RISC loading complex RNA binding subunit 2 4
MIRT559437 ARSJ arylsulfatase family member J 2 2
MIRT610490 GPC4 glypican 4 2 2
MIRT644682 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT658214 FBXO21 F-box protein 21 2 2
MIRT756083 TP53 tumor protein p53 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-628 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-628-3p Cisplatin 5460033 NSC119875 approved resistant High Tongue Squamous Cell Carcinoma cell line (Tca8113)
hsa-miR-628-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-628-3p Erlotinib 176870 NSC718781 approved sensitive High Epithelial Cancer cell line (A549, UKY-29, H460, H1975, H1650, H3255, PC-9, H358)
hsa-miR-628-3p Siop Treatment Protocol sensitive High Nephroblastoma tissue
hsa-miR-628-3p Sunitinib 5329102 NSC750690 approved resistant High Metastatic Renal Cell Carcinoma tissue and cell line (Caki-2)
hsa-miR-628-3p Chemotherapy sensitive High Epithelial Ovarian Cancer tissue
hsa-miR-628-3p Platinum-based doublet chemotherapy resistant Low Lung Adenocarcinoma tissue
hsa-miR-628-3p Doxorubicin 31703 NSC123127 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-628-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (TAMR8)
hsa-miR-628-3p Aromatase Inhibitor sensitive Low Breast Cancer cell line (MCF-7)
hsa-miR-628-3p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-628-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-628-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-628-3p Platinum 23939 sensitive High High-Grade Serous Ovarian Cancer tissue
hsa-miR-628-3p Cisplatin 5460033 NSC119875 approved sensitive High Bladder Cancer cell line (CDDP-R-BOY, CDDP-R-T24)
hsa-miR-628-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-628-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-628-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-628-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-628-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (TamR8)
hsa-miR-628-3p Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-628-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-628-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-628-3p Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)

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