miRTarBase - #MIRT072492


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pre-miRNA Information
pre-miRNA hsa-mir-548w   
Genomic Coordinates chr16: 26025237 - 26025310
Description Homo sapiens miR-548w stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548w
Sequence 10| AAAAGUAACUGCGGUUUUUGCCU |32
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 16 + 26025249 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs918935898 1 dbSNP
rs573018690 4 dbSNP
rs1355338018 5 dbSNP
rs1232952112 7 dbSNP
rs768527810 12 dbSNP
rs1331351492 13 dbSNP
rs925963272 14 dbSNP
rs1299975801 16 dbSNP
rs1247960808 17 dbSNP
rs1217191628 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RAB8B   
Synonyms -
Description RAB8B, member RAS oncogene family
Transcript NM_016530   
Expression
Putative miRNA Targets on RAB8B
3'UTR of RAB8B
(miRNA target sites are highlighted)		 
>RAB8B|NM_016530|3'UTR
   1 TGAACTCTTTCTGAGAGACTGCAGCACACCTAGAGGGCCCTTTCCTGCTTCTCTGAAAGCACAGGTCACCCAGCCTCAGA
  81 ATCACACCTCCCGGCTGCTGCTGAGAGCACCACTGAACTTAGACCTCTCAACACAGTATGCCAAGTGGATTCCAGCCTCA
 161 TGGCCTAGCAAAAGAACAGACTCCCTTTTTCAAACATGGAAGCAATGAAGTGGAGACACATGCAGGACCTAACTCGTTTT
 241 TTCCTTGTTTTATTACCTGTTGCAGAAGCGGTTATCTTTCTTTTTTACTTTGCACATCAGTGTTAGCCTTTCCCTATTTC
 321 AGCACAATCTTAGACTCATATTTGCACACTTTTGTGTCGTGAAGTTCTAGACAAATTTGTACATGTGGCAATGTTAAAAG
 401 AGCATTTACAGCAGAGGTTAATATACTAAAATTAAAGGGTATTTGGTCTGGTTCATATGGTCAAATATTACTGCCTTGGT
 481 AGCATTTATTTAAGGGCTTTTTCTTAAATAAGAATCATTAAAGTCATTAAAAAAATTTACTGAAATGCCCATCTTGTCAT
 561 CAAAGGCCACAATTTCTTTATTTCTTCAGATTAAGAGCTTTGCCTCATCCCCGACCTGTTTTCCAGAGTCTGGGTAGCTG
 641 AATGAATCACTTTAAAATGATTACCTCTGCCTAATCTATAGAAACTGCATTTGGAAATCACCATAATCTCATTTTTCCCT
 721 GGGGTTTGTATTTGCTATTCTTTCCCATGTTTGACTTAAGTGTAATCACTCTTAAGTAATATTTGAACATTATTATCTGT
 801 TTCTATTTGTGAACTTCTTGAGCTGAAATTTTACGTGGGCTGAGAGATATACCATTTAGGGTTTTAGTGCAGCATCTAAC
 881 TGTGATTCTGTCAATAAGGATATGTAATATATTTTTTCTTAGGTTCACTCCTTAGCTGGCTGGTTTAGTTGTAATACCAA
 961 ATTCCTACCATAATCCCTGTCTACAAAAGTTAGGTTTAGATTTTAGTTTGCGGAAACCTTCCCTATATAGAGACAGATTA
1041 ACTTGTTGATATAAATTTAATAGAGCTAGCTCTTGGTAATGGTGAAAATAATGAGTTTTGGTTGGTTTTATTTGGCAGAT
1121 GTTTTTAGAAATAAAAGTACTTAGACCTAGTGCAGCCTCTAGGAAAAGTCTTGCCTTTTCATTAGAGAAAACAGGACCAA
1201 GGTTTCAGTTTTCAAACAGCTGTTGTTGATTGTGTAGAACCCAGTTCCATCTGTTTTGGTTCATTGTTACAGAACTTAGT
1281 CCAGTCATTTGGGCTAAAGCCAACCAAAAGCTTAGTTGCCTTTCTCAACAAACACTGGTACTGGTATACTTTTGTAGATG
1361 AAACCATCACAAGGTATTTAGTGTTAACTTGTGTGCCAAATTCAGATCACTATGTCGTTGTTGCTCTAGCCTTCAGTGTC
1441 ATAACACAGGGGGGATAAAACAGAGGGGATGAGGGAAATGAATTCTGTTAATAATTATTCTTCCTGGTATGCCTGTTTTG
1521 CTTCACAAAGGCTACTATCATGCTGGATAGATAAGAACAGGAGATGGCAGTGGAAAGGGATTGCTTGTTACCACAGAGAA
1601 TTCTCTTCAAATTAAGATATGTCATTAGAATGCTTGGACCAGTCAATCTTTTGTACTTATTTGAAAATATAGGAACAATT
1681 TAGCAGCTGCAAATATGCCCAAGCTATTTTTAATAGATATACTAAACTTATTGTTGACAAATTTCAGCCTCCTTAATTTT
1761 TTTTTTTTTGGTAATTACCTATAGGCTTAAAAGTCATTCGTTGCTGTTCTAGTATAATTAGTAGTTCCGTGATTGAAAGT
1841 TTATTGTAATTCTACTATCTTCAAATTAGATACATTTTCAAAAGGAAAAGATAATTTTTTAGAAACATCTTAATATTCAC
1921 TATTTCCTGAAAAAATCCAAGCAGTTAACGCTTTCTGGATGGTAACAAAGTACCTTCTAAAAGATAAGTGCTATGACACC
2001 ATGTATGAATGTAATTCTCTTAGTAATTTACCTCTGACTATTTGGTGTCTTAACGCTTTGGTTTATATAATCTCAGGGGT
2081 TGTCTGCAAACCAAAACTGACATATTCTGTGGTTAGCTTTTATTACTTTTTTTTTTAACAGAATGCTTTGCTTTGGTTAT
2161 ATTTCTTCTTTCTTCTTTTGTCTTATATGGATTAATAACTAGTCTCCATGAACTTCACTTGAAAGAGCCTGTAAAAGTTA
2241 GATGAGTCTAAAAGTGCTCTTTGAAGTAGCAGCAAATTGGGAGTATATGCTCTGTTATATAGAAATAAATTGTCCTTGCT
2321 ATTTTCTTACATTTAGCTTTGCTAGATTGTATATACATTGAGCTAAGACCTTAGGAAATTCACTTTCTGCATGATAAAAT
2401 GACCCAATAAATATTCCACTTTGCTTAATAATGTACATACAGTGCATTATTTTTTCTATTTGTAGATGAATTTAATGACA
2481 GATAATTGTCTGTTCCCCGCTGAAACTGAAGAAATCTAGTTTTTTTGTGAACATTTTTGTGGTCTTATGGATAAGGTACA
2561 TGAAGATTTTTGCAGCAGTATTAGTGGTTCAGTGGCTGCACTTTATTAATCAGTGTGTTAATTTTTGACAGTGATTGGAC
2641 TAGACCTTTTCAAATAGAGTCTGAGGGTATCAGACAGTGAAAATGTGCTGTAACTAAGTAGCATGTAAATCAGTTGATTG
2721 TAAAACGTTTCGCTGGGAACTTATTTTAGCTATATTTTACTTCAGACAGATTATGATACAATAATCTACCTGTGCATCAG
2801 TTAGTAGGTGCTGCAGGGTTTCTTACTATTTACAGAAACATTTTGTGCAGTCTTTGTTATAAATTTTCAGAAGACTATAC
2881 TCTTTACTTTGAAGGTCTATTTTTTAATTATACCTCATTTAGCTAACTAGTATTCTAATACCTGGTAGAAAAACAGTGAG
2961 CCAGCCTTTAAGCATCTAACAAAATTTAGACTCTTTGTTTTGTTTTGAACTGAAGACATCATTGGGAAAGGTAGGAAATA
3041 TTAGTTTAGGATAGAGCATACATGTCATATCCAGTAGCATAAAAAAAGTATTATCTCCCTGTCTCCATTAATAAATTTAG
3121 CTGTGCAATATAGGTGCGTTTTTGCAGAAGTTTCTAGTAAGAGATTATAACTCCATTTTACAGGTTCTGAATGCTCAGAG
3201 TCTATATTAAGGCTTATAAAGTTTTTCCTGTGATCAGTAAGTGACACATTTAAGCAGACATTCTTTTCAAGTTCATGACT
3281 TAGATTCCTTTACAAATTTAGTTCTCAATCTTTAAAAACCACATTTCATTATGTTGGTTAATTATTATAAATTTTAAGCA
3361 CTCATTTCTGCAATCAGGTTTCTCAGAATTTTTTTTTTTTAAACAGAAGAGACATTCCTTTTTCCTTGTTACATCCAAGG
3441 GGGGCACAGGGGTGGGTGGAAAGGAATGTCTAAAAATGAAATCCCTTGATATAGAGGGACCTAGACGGACAGGATATGCT
3521 AAAATAATTTCAAATTCTAGCACAATTTTAGAGTAGAATAAGTCATTTTTTTAGACTAATAAAATTAATGGCTGTCATGT
3601 TCACTCTGAAAAAAATCTAAATGACTGAAATGTACAGAAATAAAAATTAGCAAACAATTATTCTAGGGATATTTTCAGAT
3681 TTTACTTCATTTCTTGAAATGCGTGTGCCATATGCAATTGCATTTCTTGTGCCAAGAAACTAATAGAACTTATTTCACTT
3761 TACCTTTTTTTAAAATGTGAATTTAGTTATTATAGTTCAATTTTATGGCCTTACAGATGGCTTTTATTTTGTTTGCAGCT
3841 GACACTGCAGTTCCTTTCATGCAAAATACCATAAACTGTTTGATGAAAATCATGCCCCTAATGGAAACTCTCTAGTTTTT
3921 CCATATAACTATCCTACTGTACATGTTTAAACATATTTTATTTTTGCTCCAATGGCTTAATGTGAAAAGCTCCTGCAGAT
4001 AAGTGGACCTGTCATGTGGTTAATCTTGTTTAAGCCAATTCATTAACTGTGTACTGATACTGATGCTATGTTTTTTTTAA
4081 ATGGATTTTATTCCAGGTGAACTTTTTTTTTATAATAATGTTCGTCTAAAATAAAAACTACATAATGAAAATGAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uccGU-UUUUGGCGU---CAAUGAAAa 5'
             || ||:||: :|    ||||||| 
Target 5' tttCAGAAGACTATACTCTTTACTTTg 3'
 2865 - 2891 152.00 -5.50
2 
miRNA  3' ucCGUUUUUGGCGUCAAUGAAAa 5'
            || :| ||:|||||| |||| 
Target 5' caGCTGACACTGCAGTTCCTTTc 3'
 3836 - 3858 149.00 -14.90
3 
miRNA  3' ucCGUUUUUGGC-GU---------CAAUGAAAa 5'
            |||:||:| | :|          ||||||| 
Target 5' ttGCAGAAGCGGTTATCTTTCTTTTTTACTTTg 3'
 260 - 292 145.00 -10.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30162116 3 COSMIC
COSN30485398 12 COSMIC
COSN20055708 14 COSMIC
COSN6277814 26 COSMIC
COSN13632073 31 COSMIC
COSN30107712 34 COSMIC
COSN8175623 42 COSMIC
COSN6277815 50 COSMIC
COSN28185189 71 COSMIC
COSN30125376 93 COSMIC
COSN30162299 94 COSMIC
COSN30158355 206 COSMIC
COSN29296979 323 COSMIC
COSN28859205 324 COSMIC
COSN31562745 417 COSMIC
COSN25615175 615 COSMIC
COSN31994567 1238 COSMIC
COSN31552010 1240 COSMIC
COSN7050686 1369 COSMIC
COSN31517494 1382 COSMIC
COSN22475344 1406 COSMIC
COSN31588448 1417 COSMIC
COSN31595658 1455 COSMIC
COSN6277816 1478 COSMIC
COSN31519191 1486 COSMIC
COSN21913505 1551 COSMIC
COSN31611124 1560 COSMIC
COSN22696259 1600 COSMIC
COSN21916254 1637 COSMIC
COSN27474315 1770 COSMIC
COSN27576859 1770 COSMIC
COSN25644189 1771 COSMIC
COSN6277817 1850 COSMIC
COSN31515754 1919 COSMIC
COSN8749118 1959 COSMIC
COSN31483940 2008 COSMIC
COSN31569373 2088 COSMIC
COSN31595001 2144 COSMIC
COSN31571894 2621 COSMIC
COSN25150839 2644 COSMIC
COSN5800019 2896 COSMIC
COSN31516941 2931 COSMIC
COSN31528876 2962 COSMIC
COSN22233804 3083 COSMIC
COSN31531883 3254 COSMIC
COSN26563595 3272 COSMIC
COSN31606210 3279 COSMIC
COSN26572947 3294 COSMIC
COSN26306558 3344 COSMIC
COSN31547697 3354 COSMIC
COSN29085394 3401 COSMIC
COSN30544369 3487 COSMIC
COSN31542554 3683 COSMIC
COSN31548906 3727 COSMIC
COSN31548456 3747 COSMIC
COSN25128699 4040 COSMIC
COSN29215249 4042 COSMIC
COSN8749119 4102 COSMIC
COSN31646583 4126 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs535913243 5 dbSNP
rs1374467067 14 dbSNP
rs1239252665 21 dbSNP
rs192841904 22 dbSNP
rs1315661924 26 dbSNP
rs1487421359 27 dbSNP
rs766307679 29 dbSNP
rs572387833 34 dbSNP
rs201696255 39 dbSNP
rs1364164004 42 dbSNP
rs564435832 48 dbSNP
rs892401429 49 dbSNP
rs1212046472 56 dbSNP
rs1314264985 61 dbSNP
rs1277149749 62 dbSNP
rs1219136924 66 dbSNP
rs1339535894 73 dbSNP
rs1022233544 80 dbSNP
rs1397814062 83 dbSNP
rs1442115676 83 dbSNP
rs185290536 84 dbSNP
rs1352391944 93 dbSNP
rs143919218 94 dbSNP
rs752517393 95 dbSNP
rs1333473001 103 dbSNP
rs562262711 108 dbSNP
rs529001179 109 dbSNP
rs1225592524 115 dbSNP
rs1172920958 125 dbSNP
rs1476842275 135 dbSNP
rs377151242 138 dbSNP
rs1188865329 139 dbSNP
rs959695583 141 dbSNP
rs1033765031 145 dbSNP
rs547434941 147 dbSNP
rs952821795 157 dbSNP
rs992952062 164 dbSNP
rs1014666412 166 dbSNP
rs1203717417 170 dbSNP
rs1216260965 170 dbSNP
rs962128026 175 dbSNP
rs908761984 178 dbSNP
rs940274437 182 dbSNP
rs973250310 190 dbSNP
rs559121268 196 dbSNP
rs922939864 197 dbSNP
rs1483731476 198 dbSNP
rs932990590 202 dbSNP
rs1402373453 206 dbSNP
rs1329170287 208 dbSNP
rs558205431 209 dbSNP
rs1050102403 214 dbSNP
rs920443112 220 dbSNP
rs1399617080 234 dbSNP
rs931877569 236 dbSNP
rs1267576181 237 dbSNP
rs1451880592 248 dbSNP
rs1470679289 258 dbSNP
rs762786369 264 dbSNP
rs936478786 265 dbSNP
rs1053607099 270 dbSNP
rs1174037949 271 dbSNP
rs1426302153 272 dbSNP
rs1273263973 282 dbSNP
rs532937474 287 dbSNP
rs1344614160 290 dbSNP
rs986014328 292 dbSNP
rs1311480051 296 dbSNP
rs911188275 300 dbSNP
rs1378771248 308 dbSNP
rs370595767 317 dbSNP
rs1168916655 325 dbSNP
rs1046783682 336 dbSNP
rs1041481911 339 dbSNP
rs1459456134 349 dbSNP
rs1033732576 350 dbSNP
rs763661289 350 dbSNP
rs1343718413 352 dbSNP
rs751167558 359 dbSNP
rs756776296 360 dbSNP
rs1275723280 368 dbSNP
rs1439607491 372 dbSNP
rs1254111320 376 dbSNP
rs952789322 378 dbSNP
rs1006081063 384 dbSNP
rs904709547 386 dbSNP
rs780750165 389 dbSNP
rs551749135 390 dbSNP
rs1355640277 392 dbSNP
rs1056064434 396 dbSNP
rs368282447 396 dbSNP
rs571248925 396 dbSNP
rs1272237112 401 dbSNP
rs1344157041 404 dbSNP
rs1348527194 406 dbSNP
rs1303232768 410 dbSNP
rs1388626959 415 dbSNP
rs1205790599 417 dbSNP
rs1293211551 421 dbSNP
rs1290394297 429 dbSNP
rs1400831359 429 dbSNP
rs1362909088 440 dbSNP
rs961886185 441 dbSNP
rs576531067 449 dbSNP
rs374860228 455 dbSNP
rs1053939 457 dbSNP
rs1013905513 458 dbSNP
rs1200526453 459 dbSNP
rs189400496 465 dbSNP
rs1266020802 466 dbSNP
rs1015034702 469 dbSNP
rs1185089955 503 dbSNP
rs1489061450 505 dbSNP
rs754388078 510 dbSNP
rs1392427241 511 dbSNP
rs1430880578 513 dbSNP
rs1163583451 517 dbSNP
rs755459021 523 dbSNP
rs537305084 527 dbSNP
rs1215633895 529 dbSNP
rs954350529 529 dbSNP
rs961794564 530 dbSNP
rs1257713835 535 dbSNP
rs985779087 536 dbSNP
rs910241886 537 dbSNP
rs1300663446 552 dbSNP
rs1219266439 557 dbSNP
rs1342616549 559 dbSNP
rs1296534665 568 dbSNP
rs752400437 573 dbSNP
rs1403326438 578 dbSNP
rs1305150590 596 dbSNP
rs936420725 604 dbSNP
rs1376636185 607 dbSNP
rs1344788491 611 dbSNP
rs1170788425 613 dbSNP
rs995015541 614 dbSNP
rs1053979584 616 dbSNP
rs1192423914 617 dbSNP
rs1428906025 626 dbSNP
rs879903296 629 dbSNP
rs1295044380 637 dbSNP
rs549205303 640 dbSNP
rs1482891992 642 dbSNP
rs16946717 645 dbSNP
rs1199384961 646 dbSNP
rs1229038051 649 dbSNP
rs146468305 650 dbSNP
rs985961850 660 dbSNP
rs1046310813 663 dbSNP
rs772352704 666 dbSNP
rs1341516433 672 dbSNP
rs906460868 676 dbSNP
rs1353609906 677 dbSNP
rs911807531 679 dbSNP
rs966380225 690 dbSNP
rs1402123909 701 dbSNP
rs1332589495 703 dbSNP
rs758211943 712 dbSNP
rs976765813 715 dbSNP
rs777867347 724 dbSNP
rs1397477469 725 dbSNP
rs547661137 737 dbSNP
rs1213215816 738 dbSNP
rs1043163833 745 dbSNP
rs888481425 747 dbSNP
rs1185143382 749 dbSNP
rs1250281331 769 dbSNP
rs1422981326 771 dbSNP
rs1005634239 781 dbSNP
rs1238736767 783 dbSNP
rs1016098638 786 dbSNP
rs1256230317 789 dbSNP
rs1198318250 793 dbSNP
rs961535745 796 dbSNP
rs926075056 806 dbSNP
rs747236522 810 dbSNP
rs1029847128 812 dbSNP
rs1310697209 814 dbSNP
rs1449617571 815 dbSNP
rs1163854767 819 dbSNP
rs554215213 821 dbSNP
rs867525018 835 dbSNP
rs572394618 836 dbSNP
rs539437895 840 dbSNP
rs557689948 842 dbSNP
rs1457260125 848 dbSNP
rs1322874320 850 dbSNP
rs1180503460 851 dbSNP
rs1014936320 855 dbSNP
rs957981582 861 dbSNP
rs1390540569 862 dbSNP
rs1269769996 866 dbSNP
rs1036006121 868 dbSNP
rs897487314 873 dbSNP
rs989205678 877 dbSNP
rs1335881707 878 dbSNP
rs913646879 879 dbSNP
rs763254646 881 dbSNP
rs1309115750 883 dbSNP
rs1436595444 886 dbSNP
rs1332296923 895 dbSNP
rs1321221620 904 dbSNP
rs576331220 918 dbSNP
rs1160251621 925 dbSNP
rs367601208 929 dbSNP
rs1379648559 936 dbSNP
rs981957249 954 dbSNP
rs1478427304 958 dbSNP
rs1027352448 976 dbSNP
rs1197114079 985 dbSNP
rs139063498 989 dbSNP
rs142965057 990 dbSNP
rs1264085812 993 dbSNP
rs770983357 994 dbSNP
rs562159279 995 dbSNP
rs1055088394 999 dbSNP
rs1284237751 1001 dbSNP
rs1220285027 1005 dbSNP
rs1346590682 1007 dbSNP
rs1018762234 1012 dbSNP
rs1272556543 1012 dbSNP
rs941367715 1013 dbSNP
rs1299609840 1017 dbSNP
rs1397939047 1019 dbSNP
rs370325955 1029 dbSNP
rs1334799371 1033 dbSNP
rs1416100625 1035 dbSNP
rs965959156 1046 dbSNP
rs1170896319 1047 dbSNP
rs1037090799 1050 dbSNP
rs1424628806 1053 dbSNP
rs776740070 1055 dbSNP
rs1196082502 1061 dbSNP
rs1477069533 1066 dbSNP
rs1241886246 1077 dbSNP
rs540797078 1080 dbSNP
rs1363291337 1083 dbSNP
rs1468714419 1093 dbSNP
rs1161611436 1096 dbSNP
rs1202520597 1101 dbSNP
rs913190861 1106 dbSNP
rs1412927094 1110 dbSNP
rs1469506154 1113 dbSNP
rs377361799 1119 dbSNP
rs1361099295 1122 dbSNP
rs1029773501 1137 dbSNP
rs1449888564 1140 dbSNP
rs978789426 1157 dbSNP
rs1397705671 1166 dbSNP
rs926022622 1168 dbSNP
rs1007093798 1171 dbSNP
rs937440160 1182 dbSNP
rs1334814423 1189 dbSNP
rs1334636991 1193 dbSNP
rs1173178145 1197 dbSNP
rs1464249882 1200 dbSNP
rs1033681014 1202 dbSNP
rs957692845 1206 dbSNP
rs1055946761 1210 dbSNP
rs1182811916 1227 dbSNP
rs2053632 1231 dbSNP
rs1457858190 1233 dbSNP
rs950293470 1235 dbSNP
rs1196440025 1237 dbSNP
rs1306579006 1241 dbSNP
rs1290094150 1251 dbSNP
rs1020677232 1264 dbSNP
rs1376665827 1265 dbSNP
rs1037030866 1270 dbSNP
rs1447420017 1273 dbSNP
rs1329359568 1276 dbSNP
rs1377816101 1277 dbSNP
rs1333459192 1284 dbSNP
rs1460469215 1290 dbSNP
rs147545673 1293 dbSNP
rs769871843 1294 dbSNP
rs1048740143 1310 dbSNP
rs937832908 1315 dbSNP
rs1407486965 1317 dbSNP
rs775503809 1329 dbSNP
rs888851557 1347 dbSNP
rs541785317 1358 dbSNP
rs1240509700 1362 dbSNP
rs1176248045 1375 dbSNP
rs1479996093 1379 dbSNP
rs1007276953 1380 dbSNP
rs1246973275 1382 dbSNP
rs1223267404 1383 dbSNP
rs1319772172 1395 dbSNP
rs1018755949 1397 dbSNP
rs1240528852 1408 dbSNP
rs1355771235 1412 dbSNP
rs901674621 1413 dbSNP
rs762856905 1414 dbSNP
rs1389770327 1417 dbSNP
rs545034911 1418 dbSNP
rs563229992 1428 dbSNP
rs1037423920 1437 dbSNP
rs576370547 1443 dbSNP
rs778816645 1444 dbSNP
rs934069187 1446 dbSNP
rs200491248 1448 dbSNP
rs1382721538 1449 dbSNP
rs889912186 1451 dbSNP
rs1425248359 1453 dbSNP
rs968028811 1454 dbSNP
rs1487308843 1462 dbSNP
rs1252647961 1464 dbSNP
rs1267649346 1478 dbSNP
rs1480192075 1484 dbSNP
rs530839824 1486 dbSNP
rs1489121399 1488 dbSNP
rs139407892 1494 dbSNP
rs1316482769 1495 dbSNP
rs1302058838 1498 dbSNP
rs1375705323 1501 dbSNP
rs1033026416 1504 dbSNP
rs1302742084 1508 dbSNP
rs1173057268 1514 dbSNP
rs1401041038 1516 dbSNP
rs567376292 1519 dbSNP
rs893395339 1522 dbSNP
rs1453654014 1538 dbSNP
rs1360192126 1539 dbSNP
rs1010509860 1541 dbSNP
rs530584269 1559 dbSNP
rs763936944 1562 dbSNP
rs1427765584 1564 dbSNP
rs1309255313 1567 dbSNP
rs1350647601 1571 dbSNP
rs1478703899 1575 dbSNP
rs1260761811 1577 dbSNP
rs1204549820 1578 dbSNP
rs1403938814 1584 dbSNP
rs1483547041 1588 dbSNP
rs1257624660 1598 dbSNP
rs547467410 1599 dbSNP
rs547614779 1601 dbSNP
rs959167042 1604 dbSNP
rs1219468886 1611 dbSNP
rs773942282 1619 dbSNP
rs1342835587 1624 dbSNP
rs991574865 1625 dbSNP
rs1293895549 1654 dbSNP
rs114169448 1661 dbSNP
rs1251131994 1671 dbSNP
rs1340594244 1672 dbSNP
rs1380565225 1673 dbSNP
rs1305058738 1688 dbSNP
rs1207930639 1689 dbSNP
rs1467819470 1690 dbSNP
rs950258227 1699 dbSNP
rs962935278 1714 dbSNP
rs868674410 1718 dbSNP
rs972297078 1720 dbSNP
rs919485521 1721 dbSNP
rs918579943 1722 dbSNP
rs1370930534 1725 dbSNP
rs930924307 1729 dbSNP
rs1192210363 1732 dbSNP
rs1490222608 1734 dbSNP
rs1258213385 1740 dbSNP
rs1181642014 1743 dbSNP
rs1048681061 1747 dbSNP
rs149624714 1749 dbSNP
rs1199285589 1752 dbSNP
rs911319485 1755 dbSNP
rs1387632600 1757 dbSNP
rs942846403 1757 dbSNP
rs1434012780 1771 dbSNP
rs191346218 1772 dbSNP
rs1389333764 1774 dbSNP
rs1447579733 1775 dbSNP
rs1451094876 1783 dbSNP
rs1170474808 1789 dbSNP
rs372346517 1791 dbSNP
rs530024661 1796 dbSNP
rs1393925714 1800 dbSNP
rs1166912454 1801 dbSNP
rs1458254402 1805 dbSNP
rs1369970288 1815 dbSNP
rs901626566 1830 dbSNP
rs1443943447 1839 dbSNP
rs1291320178 1854 dbSNP
rs1010895454 1855 dbSNP
rs1387010389 1856 dbSNP
rs1295226685 1858 dbSNP
rs1439585708 1860 dbSNP
rs761500266 1889 dbSNP
rs1009809933 1891 dbSNP
rs1195413313 1894 dbSNP
rs1357577923 1895 dbSNP
rs1020807937 1917 dbSNP
rs903745586 1919 dbSNP
rs549724309 1921 dbSNP
rs1244167304 1928 dbSNP
rs1359360054 1945 dbSNP
rs1310582499 1950 dbSNP
rs902148008 1951 dbSNP
rs1333458853 1967 dbSNP
rs1032974284 1971 dbSNP
rs1299054918 1974 dbSNP
rs1386972647 1976 dbSNP
rs1325783725 1998 dbSNP
rs925194125 2001 dbSNP
rs144341015 2002 dbSNP
rs1034746642 2033 dbSNP
rs1423717360 2035 dbSNP
rs1219411261 2039 dbSNP
rs959092857 2040 dbSNP
rs570138345 2041 dbSNP
rs1471222380 2044 dbSNP
rs991522405 2049 dbSNP
rs1181434771 2055 dbSNP
rs1012027200 2056 dbSNP
rs1017173098 2057 dbSNP
rs1204777502 2067 dbSNP
rs537382970 2068 dbSNP
rs1447486124 2072 dbSNP
rs776678747 2075 dbSNP
rs1287429591 2076 dbSNP
rs755584906 2080 dbSNP
rs1190400161 2093 dbSNP
rs1347991000 2097 dbSNP
rs1278455039 2100 dbSNP
rs1024809897 2101 dbSNP
rs556005330 2102 dbSNP
rs1332491474 2115 dbSNP
rs538728467 2127 dbSNP
rs973021957 2127 dbSNP
rs1409630645 2138 dbSNP
rs574200085 2142 dbSNP
rs955346234 2144 dbSNP
rs1423199038 2157 dbSNP
rs1162026938 2162 dbSNP
rs971529706 2164 dbSNP
rs911243702 2166 dbSNP
rs972628815 2171 dbSNP
rs919445671 2187 dbSNP
rs1431753308 2188 dbSNP
rs930873408 2215 dbSNP
rs985010542 2238 dbSNP
rs541605532 2244 dbSNP
rs1054577994 2249 dbSNP
rs765735018 2263 dbSNP
rs1386877855 2268 dbSNP
rs1218310997 2284 dbSNP
rs1437771624 2288 dbSNP
rs181365123 2301 dbSNP
rs1321680052 2306 dbSNP
rs1382626392 2316 dbSNP
rs943028963 2319 dbSNP
rs1040078329 2322 dbSNP
rs946245380 2332 dbSNP
rs922993339 2335 dbSNP
rs1222517226 2338 dbSNP
rs1340960368 2338 dbSNP
rs148757242 2348 dbSNP
rs1428304220 2358 dbSNP
rs753142491 2361 dbSNP
rs375651362 2362 dbSNP
rs1003150660 2366 dbSNP
rs545099881 2380 dbSNP
rs1415164726 2394 dbSNP
rs903693430 2405 dbSNP
rs1000752523 2406 dbSNP
rs758743943 2418 dbSNP
rs1210311957 2438 dbSNP
rs563304845 2450 dbSNP
rs1188688255 2457 dbSNP
rs1013315077 2463 dbSNP
rs1180117258 2466 dbSNP
rs1242095061 2469 dbSNP
rs1257640801 2480 dbSNP
rs34896765 2482 dbSNP
rs1157914297 2489 dbSNP
rs994028984 2493 dbSNP
rs542599880 2496 dbSNP
rs1025492273 2499 dbSNP
rs1409259247 2500 dbSNP
rs771062955 2503 dbSNP
rs1458508481 2507 dbSNP
rs571340200 2517 dbSNP
rs1338482765 2520 dbSNP
rs971858735 2520 dbSNP
rs561225286 2524 dbSNP
rs747234832 2527 dbSNP
rs1454511932 2529 dbSNP
rs1380411974 2533 dbSNP
rs1334788865 2543 dbSNP
rs1160288636 2551 dbSNP
rs1401327596 2552 dbSNP
rs1172771668 2553 dbSNP
rs993615134 2554 dbSNP
rs1446456966 2555 dbSNP
rs1305162508 2557 dbSNP
rs879767226 2561 dbSNP
rs1164399321 2562 dbSNP
rs1409243031 2562 dbSNP
rs528332261 2574 dbSNP
rs986706376 2578 dbSNP
rs1241767585 2580 dbSNP
rs1182481105 2581 dbSNP
rs1018221435 2584 dbSNP
rs1234306641 2585 dbSNP
rs1286558061 2587 dbSNP
rs564531405 2588 dbSNP
rs964114214 2596 dbSNP
rs990607182 2602 dbSNP
rs984956223 2604 dbSNP
rs914676359 2613 dbSNP
rs946185890 2614 dbSNP
rs977601013 2621 dbSNP
rs1229253079 2623 dbSNP
rs910800386 2626 dbSNP
rs964952818 2630 dbSNP
rs938907406 2631 dbSNP
rs371617374 2632 dbSNP
rs184281602 2638 dbSNP
rs1300183272 2639 dbSNP
rs1440274510 2652 dbSNP
rs922982944 2654 dbSNP
rs1180763932 2656 dbSNP
rs1352914051 2661 dbSNP
rs947753537 2667 dbSNP
rs1038499544 2674 dbSNP
rs945082980 2678 dbSNP
rs1042148128 2679 dbSNP
rs1248999412 2680 dbSNP
rs1409529688 2685 dbSNP
rs994344449 2691 dbSNP
rs571080310 2692 dbSNP
rs1025416860 2695 dbSNP
rs1246883269 2712 dbSNP
rs925060555 2719 dbSNP
rs1489787294 2720 dbSNP
rs936487376 2723 dbSNP
rs533266375 2727 dbSNP
rs964362429 2728 dbSNP
rs144053276 2732 dbSNP
rs1332984175 2733 dbSNP
rs1022069891 2744 dbSNP
rs146443748 2755 dbSNP
rs1429692267 2756 dbSNP
rs188236419 2763 dbSNP
rs1407199208 2767 dbSNP
rs1364073768 2768 dbSNP
rs1306190659 2773 dbSNP
rs1454754511 2783 dbSNP
rs1347389654 2787 dbSNP
rs1156350470 2799 dbSNP
rs555829361 2805 dbSNP
rs977536770 2818 dbSNP
rs1352481922 2819 dbSNP
rs554105389 2822 dbSNP
rs1479371214 2827 dbSNP
rs938835313 2832 dbSNP
rs1366602129 2834 dbSNP
rs1486809833 2837 dbSNP
rs1258850844 2839 dbSNP
rs1213764710 2844 dbSNP
rs991704999 2853 dbSNP
rs1264036115 2855 dbSNP
rs1217220656 2857 dbSNP
rs567960565 2860 dbSNP
rs534963108 2862 dbSNP
rs1383084819 2863 dbSNP
rs1364720591 2880 dbSNP
rs993955773 2881 dbSNP
rs528637988 2900 dbSNP
rs1038021554 2902 dbSNP
rs1026347706 2906 dbSNP
rs1406166411 2913 dbSNP
rs1178215574 2919 dbSNP
rs553627717 2930 dbSNP
rs1428082650 2935 dbSNP
rs1170921445 2936 dbSNP
rs112995030 2937 dbSNP
rs1006325141 2963 dbSNP
rs1430033175 2964 dbSNP
rs180937607 2966 dbSNP
rs1185830103 2975 dbSNP
rs1485623898 2977 dbSNP
rs1243812748 2991 dbSNP
rs1046834782 2992 dbSNP
rs545150930 2994 dbSNP
rs1483783697 2998 dbSNP
rs976366328 3007 dbSNP
rs1205390078 3022 dbSNP
rs1228671051 3023 dbSNP
rs1309598138 3027 dbSNP
rs922896790 3033 dbSNP
rs966396853 3041 dbSNP
rs769938899 3055 dbSNP
rs977793661 3062 dbSNP
rs547014389 3071 dbSNP
rs936434957 3077 dbSNP
rs1338149089 3080 dbSNP
rs1449769922 3085 dbSNP
rs1404939520 3095 dbSNP
rs1352080641 3101 dbSNP
rs139830475 3102 dbSNP
rs1011939191 3108 dbSNP
rs1169731463 3109 dbSNP
rs1021618810 3122 dbSNP
rs1386947663 3125 dbSNP
rs575349829 3126 dbSNP
rs916435229 3128 dbSNP
rs949287296 3135 dbSNP
rs1046318789 3138 dbSNP
rs542615629 3139 dbSNP
rs1249981891 3146 dbSNP
rs1227078273 3147 dbSNP
rs1323003342 3162 dbSNP
rs929318457 3168 dbSNP
rs28406541 3181 dbSNP
rs1243190477 3188 dbSNP
rs1270475604 3193 dbSNP
rs1381372299 3197 dbSNP
rs75626859 3205 dbSNP
rs1297403763 3206 dbSNP
rs540122632 3219 dbSNP
rs186349079 3229 dbSNP
rs1371541889 3234 dbSNP
rs1017690514 3236 dbSNP
rs1442921548 3238 dbSNP
rs1367962609 3242 dbSNP
rs532154385 3246 dbSNP
rs1182534218 3247 dbSNP
rs1421123073 3255 dbSNP
rs1227556178 3261 dbSNP
rs151234474 3264 dbSNP
rs1344269074 3267 dbSNP
rs1214595348 3273 dbSNP
rs900678324 3278 dbSNP
rs1204932408 3284 dbSNP
rs1288541607 3288 dbSNP
rs1046771863 3290 dbSNP
rs140389109 3292 dbSNP
rs1030582325 3300 dbSNP
rs1358187203 3305 dbSNP
rs1247639038 3319 dbSNP
rs943816211 3325 dbSNP
rs375788342 3332 dbSNP
rs749233009 3333 dbSNP
rs899698415 3337 dbSNP
rs1405387020 3338 dbSNP
rs1347149422 3347 dbSNP
rs1187197085 3348 dbSNP
rs1392529710 3357 dbSNP
rs1450666318 3362 dbSNP
rs1162682705 3373 dbSNP
rs368815376 3379 dbSNP
rs1362321164 3383 dbSNP
rs201174879 3389 dbSNP
rs536266154 3389 dbSNP
rs903152016 3389 dbSNP
rs530870298 3393 dbSNP
rs1407291685 3401 dbSNP
rs1197628186 3402 dbSNP
rs1032025375 3409 dbSNP
rs1451547037 3412 dbSNP
rs1324524980 3414 dbSNP
rs957752009 3418 dbSNP
rs1394916867 3425 dbSNP
rs1434037555 3433 dbSNP
rs1267170115 3439 dbSNP
rs768377319 3440 dbSNP
rs549364172 3441 dbSNP
rs960092112 3442 dbSNP
rs1228068835 3443 dbSNP
rs1320170851 3446 dbSNP
rs916364804 3459 dbSNP
rs1382861661 3473 dbSNP
rs1158790493 3474 dbSNP
rs949239316 3482 dbSNP
rs982393023 3489 dbSNP
rs761470310 3490 dbSNP
rs767233591 3493 dbSNP
rs1174751983 3501 dbSNP
rs555843095 3507 dbSNP
rs150365746 3508 dbSNP
rs1444850185 3514 dbSNP
rs772787105 3516 dbSNP
rs887795228 3518 dbSNP
rs372673793 3526 dbSNP
rs2197381 3538 dbSNP
rs1260822875 3546 dbSNP
rs1039088649 3552 dbSNP
rs1271917093 3559 dbSNP
rs919508666 3559 dbSNP
rs1328091018 3562 dbSNP
rs1325714581 3565 dbSNP
rs1207165574 3566 dbSNP
rs1453400690 3566 dbSNP
rs900626229 3566 dbSNP
rs760187810 3567 dbSNP
rs145003666 3581 dbSNP
rs111994639 3589 dbSNP
rs775093773 3595 dbSNP
rs1420667973 3597 dbSNP
rs902736517 3598 dbSNP
rs576111087 3607 dbSNP
rs1235794406 3609 dbSNP
rs1390049612 3612 dbSNP
rs912260018 3616 dbSNP
rs753266987 3617 dbSNP
rs758907417 3631 dbSNP
rs943784680 3634 dbSNP
rs539223760 3638 dbSNP
rs1208971790 3639 dbSNP
rs1039898872 3640 dbSNP
rs921066988 3651 dbSNP
rs1411447644 3652 dbSNP
rs947217442 3655 dbSNP
rs957698451 3658 dbSNP
rs990519791 3660 dbSNP
rs1246849969 3680 dbSNP
rs557548308 3687 dbSNP
rs970904435 3691 dbSNP
rs1156600567 3694 dbSNP
rs981951151 3703 dbSNP
rs1282714175 3704 dbSNP
rs375393248 3711 dbSNP
rs1382695306 3718 dbSNP
rs918428216 3721 dbSNP
rs903118667 3730 dbSNP
rs1333480846 3733 dbSNP
rs951275820 3735 dbSNP
rs1057141599 3754 dbSNP
rs752107990 3760 dbSNP
rs984013354 3761 dbSNP
rs1382847378 3762 dbSNP
rs1293402665 3765 dbSNP
rs909838453 3765 dbSNP
rs1349436048 3769 dbSNP
rs1226197421 3780 dbSNP
rs1470315630 3782 dbSNP
rs1234203864 3789 dbSNP
rs13681 3792 dbSNP
rs1039470876 3793 dbSNP
rs1351924662 3797 dbSNP
rs1013000771 3804 dbSNP
rs1200365650 3805 dbSNP
rs1277170834 3811 dbSNP
rs922027798 3817 dbSNP
rs1188674702 3818 dbSNP
rs1227764085 3825 dbSNP
rs933414733 3848 dbSNP
rs1251175774 3854 dbSNP
rs1281459947 3857 dbSNP
rs1471729902 3861 dbSNP
rs1350239727 3864 dbSNP
rs117288058 3872 dbSNP
rs995434078 3877 dbSNP
rs1413871127 3894 dbSNP
rs1364187258 3896 dbSNP
rs1163483924 3900 dbSNP
rs1026509043 3909 dbSNP
rs1409757104 3913 dbSNP
rs902683691 3924 dbSNP
rs1171810410 3927 dbSNP
rs757521616 3932 dbSNP
rs192308863 3947 dbSNP
rs1312885947 3951 dbSNP
rs1201246193 3954 dbSNP
rs1349414428 3960 dbSNP
rs373584826 3965 dbSNP
rs1289887531 3969 dbSNP
rs1336696151 3970 dbSNP
rs965017823 3973 dbSNP
rs1286683677 3974 dbSNP
rs1011900506 3979 dbSNP
rs554564832 3981 dbSNP
rs1328671363 3982 dbSNP
rs1368034610 3983 dbSNP
rs1273456562 3984 dbSNP
rs1023749008 3990 dbSNP
rs1366150983 4012 dbSNP
rs1293423347 4023 dbSNP
rs746077253 4039 dbSNP
rs1346437666 4042 dbSNP
rs7181218 4043 dbSNP
rs1456392171 4051 dbSNP
rs540549202 4054 dbSNP
rs780252343 4065 dbSNP
rs1178364033 4067 dbSNP
rs5813203 4071 dbSNP
rs978983207 4071 dbSNP
rs1187024962 4072 dbSNP
rs1486272726 4073 dbSNP
rs1025434411 4077 dbSNP
rs1206835954 4079 dbSNP
rs1464631311 4084 dbSNP
rs1263943025 4095 dbSNP
rs1482141247 4096 dbSNP
rs951212482 4099 dbSNP
rs1251458157 4102 dbSNP
rs1310780614 4103 dbSNP
rs924467369 4103 dbSNP
rs983959742 4103 dbSNP
rs1364633308 4111 dbSNP
rs28597779 4111 dbSNP
rs1317985987 4112 dbSNP
rs1057109050 4121 dbSNP
rs1406415101 4124 dbSNP
rs576669126 4125 dbSNP
rs1197833416 4127 dbSNP
rs561252453 4128 dbSNP
rs1170797304 4129 dbSNP
rs1430251086 4133 dbSNP
rs1388191872 4134 dbSNP
rs1186788522 4136 dbSNP
rs1464473073 4142 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_016530 | 3UTR | CUAGCAAAAGAACAGACUCCCUUUUUCAAACAUGGAAGCAAUGAAGUGGAGACACAUGCAGGACCUAACUCGUUUUUUCCUUGUUUUAUUACCUGUUGCAGAAGCGGUUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_016530 | 3UTR | UUUCAAACAUGGAAGCAAUGAAGUGGAGACACAUGCAGGACCUAACUCGUUUUUUCCUUGUUUUAUUACCUGUUGCAGAAGCGGUUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_016530 | 3UTR | AAGAACAGACUCCCUUUUUCAAACAUGGAAGCAAUGAAGUGGAGACACAUGCAGGACCUAACUCGUUUUUUCCUUGUUUUAUUACCUGUUGCAGAAGCGGUUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_016530 | 3UTR | CUAGCAAAAGAACAGACUCCCUUUUUCAAACAUGGAAGCAAUGAAGUGGAGACACAUGCAGGACCUAACUCGUUUUUUCCUUGUUUUAUUACCUGUUGCAGAAGCGGUUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_016530 | 3UTR | UCCCUUUUUCAAACAUGGAAGCAAUGAAGUGGAGACACAUGCAGGACCUAACUCGUUUUUUCCUUGUUUUAUUACCUGUUGCAGAAGCGGUUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_016530 | 3UTR | AACAGACUCCCUUUUUCAAACAUGGAAGCAAUGAAGUGGAGACACAUGCAGGACCUAACUCGUUUUUUCCUUGUUUUAUUACCUGUUGCAGAAGCGGUUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000321437.4 | 3UTR | UUAUCUUUCUUUUUUACUUUGCACAUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-548w Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057125 DDIT4 DNA damage inducible transcript 4 2 4
MIRT063369 ETNK1 ethanolamine kinase 1 2 2
MIRT072492 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT082186 ACTN4 actinin alpha 4 2 6
MIRT083033 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT085188 SLC5A3 solute carrier family 5 member 3 2 4
MIRT088905 FOXN2 forkhead box N2 2 4
MIRT089494 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT092039 ABHD5 abhydrolase domain containing 5 2 2
MIRT094685 FEM1C fem-1 homolog C 2 2
MIRT095393 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT096501 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT101296 FAM135A family with sequence similarity 135 member A 2 2
MIRT103356 CBX3 chromobox 3 2 2
MIRT103872 FOXK1 forkhead box K1 2 2
MIRT104334 CLDN12 claudin 12 2 2
MIRT104501 PEG10 paternally expressed 10 2 6
MIRT111795 MPZL1 myelin protein zero like 1 2 2
MIRT177238 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT177273 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT177626 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 6
MIRT178042 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT179102 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT179587 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 6
MIRT195299 LEPROT leptin receptor overlapping transcript 2 2
MIRT203143 BACH1 BTB domain and CNC homolog 1 2 2
MIRT208430 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT214578 SMAD5 SMAD family member 5 2 4
MIRT216103 IL6ST interleukin 6 signal transducer 2 2
MIRT216355 CCNB1 cyclin B1 2 4
MIRT220050 MDFIC MyoD family inhibitor domain containing 2 2
MIRT226729 ANP32B acidic nuclear phosphoprotein 32 family member B 2 4
MIRT227698 TBC1D13 TBC1 domain family member 13 2 2
MIRT230071 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT248637 HMGN2 high mobility group nucleosomal binding domain 2 2 4
MIRT254790 XRCC6 X-ray repair cross complementing 6 2 6
MIRT264376 YAP1 Yes associated protein 1 2 2
MIRT266972 LRRC55 leucine rich repeat containing 55 2 4
MIRT273949 SPRYD4 SPRY domain containing 4 2 2
MIRT281802 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT293252 DR1 down-regulator of transcription 1 2 2
MIRT297097 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT308170 PDE12 phosphodiesterase 12 2 2
MIRT309013 USP53 ubiquitin specific peptidase 53 2 2
MIRT311470 PRRC1 proline rich coiled-coil 1 2 2
MIRT312586 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT328130 ZNF711 zinc finger protein 711 2 2
MIRT329313 FAM53C family with sequence similarity 53 member C 2 2
MIRT334642 NEK7 NIMA related kinase 7 2 2
MIRT340673 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT378858 ITGB8 integrin subunit beta 8 2 2
MIRT395789 SPCS3 signal peptidase complex subunit 3 2 2
MIRT405639 WBP4 WW domain binding protein 4 2 4
MIRT408287 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT442097 ZNRF2 zinc and ring finger 2 2 8
MIRT442840 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT443116 VLDLR very low density lipoprotein receptor 2 2
MIRT443147 ZDHHC21 zinc finger DHHC-type containing 21 2 2
MIRT443298 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2 2
MIRT445080 ZNF207 zinc finger protein 207 2 2
MIRT445384 PTCHD1 patched domain containing 1 2 4
MIRT447070 MCC mutated in colorectal cancers 2 2
MIRT447300 ZNF562 zinc finger protein 562 2 2
MIRT447512 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT449511 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449902 C11orf34 placenta expressed transcript 1 1 2
MIRT450551 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450719 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT454923 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455892 KIF2C kinesin family member 2C 2 2
MIRT463732 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT471182 PHB2 prohibitin 2 2 2
MIRT472764 MTMR6 myotubularin related protein 6 2 8
MIRT474457 KLHL11 kelch like family member 11 2 8
MIRT475985 GTPBP2 GTP binding protein 2 2 2
MIRT482277 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT485858 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT486192 ERH ERH, mRNA splicing and mitosis factor 2 4
MIRT488609 FAM3C family with sequence similarity 3 member C 2 6
MIRT489984 DDB1 damage specific DNA binding protein 1 2 2
MIRT493476 IPMK inositol polyphosphate multikinase 2 2
MIRT494280 CEP120 centrosomal protein 120 2 2
MIRT497992 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498473 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT498559 TMEM30B transmembrane protein 30B 2 2
MIRT499867 SVOP SV2 related protein 2 10
MIRT500220 INHBA inhibin beta A subunit 2 10
MIRT500694 TRIM37 tripartite motif containing 37 2 2
MIRT500988 SPPL2A signal peptide peptidase like 2A 2 4
MIRT501023 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502736 CLIP1 CAP-Gly domain containing linker protein 1 2 8
MIRT502798 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502887 CDK4 cyclin dependent kinase 4 2 8
MIRT503483 ZNF154 zinc finger protein 154 2 6
MIRT503717 GRM5 glutamate metabotropic receptor 5 2 2
MIRT505137 YOD1 YOD1 deubiquitinase 2 2
MIRT505802 RSBN1 round spermatid basic protein 1 2 8
MIRT505841 POLR1B RNA polymerase I subunit B 2 4
MIRT509284 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT516829 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT520519 TRA2B transformer 2 beta homolog 2 2
MIRT520723 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT525403 SHISA9 shisa family member 9 2 4
MIRT525867 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT526013 RBM4B RNA binding motif protein 4B 2 2
MIRT526084 TMEM41B transmembrane protein 41B 2 2
MIRT527931 FRY FRY microtubule binding protein 2 2
MIRT528818 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531062 SLC9A4 solute carrier family 9 member A4 2 4
MIRT535495 PANX1 pannexin 1 2 2
MIRT536682 IKZF5 IKAROS family zinc finger 5 2 2
MIRT536835 HMBOX1 homeobox containing 1 2 2
MIRT537202 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT537834 EFNA5 ephrin A5 2 2
MIRT538345 CSE1L chromosome segregation 1 like 2 4
MIRT541242 GPC4 glypican 4 2 2
MIRT543235 PEX7 peroxisomal biogenesis factor 7 2 2
MIRT543450 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543711 XKR9 XK related 9 2 2
MIRT543907 ESYT1 extended synaptotagmin 1 2 2
MIRT543999 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544070 METTL8 methyltransferase like 8 2 2
MIRT544187 ANGPTL3 angiopoietin like 3 2 2
MIRT544808 ACSM2B acyl-CoA synthetase medium chain family member 2B 2 2
MIRT545046 PRELID1 PRELI domain containing 1 2 2
MIRT545214 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT545289 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545550 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT546497 SIK1 salt inducible kinase 1 2 2
MIRT546914 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547675 KPNA1 karyopherin subunit alpha 1 2 4
MIRT547770 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT548687 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT548901 CHEK2 checkpoint kinase 2 2 4
MIRT549957 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550489 TMEM241 transmembrane protein 241 2 2
MIRT551049 MKLN1 muskelin 1 2 2
MIRT552811 XIAP X-linked inhibitor of apoptosis 2 4
MIRT553145 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT553830 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554258 SIX4 SIX homeobox 4 2 2
MIRT555781 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556318 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556499 LIPA lipase A, lysosomal acid type 2 2
MIRT556693 KLHL28 kelch like family member 28 2 2
MIRT556752 KLF7 Kruppel like factor 7 2 2
MIRT556990 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557146 HOXA13 homeobox A13 2 2
MIRT557487 GPR27 G protein-coupled receptor 27 2 4
MIRT558102 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT559344 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT560335 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT561299 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT561883 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT561927 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT562935 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563291 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT563405 KIF3A kinesin family member 3A 2 2
MIRT563562 KIAA1586 KIAA1586 2 2
MIRT565876 NHS NHS actin remodeling regulator 2 2
MIRT566081 RCC2 regulator of chromosome condensation 2 2 2
MIRT566396 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT567259 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT571468 CCDC80 coiled-coil domain containing 80 2 2
MIRT572939 VDAC2 voltage dependent anion channel 2 2 2
MIRT573628 ZNF724P zinc finger protein 724 2 2
MIRT573717 KHSRP KH-type splicing regulatory protein 2 2
MIRT609088 SMIM15 small integral membrane protein 15 2 6
MIRT617936 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT618379 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619627 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 2
MIRT623455 KDM5A lysine demethylase 5A 2 2
MIRT629145 CTCFL CCCTC-binding factor like 2 2
MIRT638521 LYRM2 LYR motif containing 2 2 2
MIRT649483 CLDN16 claudin 16 2 2
MIRT683148 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT691660 SLC43A3 solute carrier family 43 member 3 2 2
MIRT693201 MKI67 marker of proliferation Ki-67 2 2
MIRT695334 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT701023 PCGF5 polycomb group ring finger 5 2 2
MIRT708753 RYBP RING1 and YY1 binding protein 2 2
MIRT717558 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT719286 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT725172 SDAD1 SDA1 domain containing 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548w Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548w Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-miR-548w Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548w Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548w Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548w Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548w Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-miR-548w Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-548w Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-548w Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-548w Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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