pre-miRNA Information
pre-miRNA hsa-mir-548ac   
Genomic Coordinates chr1: 116560024 - 116560111
Description Homo sapiens miR-548ac stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ac
Sequence 53| CAAAAACCGGCAAUUACUUUUG |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 - 116560056 29233923 MiREDiBase
A-to-I 5 1 - 116560055 29233923 MiREDiBase
A-to-I 6 1 - 116560054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1182074110 6 dbSNP
rs1392446444 6 dbSNP
rs1326234665 7 dbSNP
rs556579863 8 dbSNP
rs993390910 9 dbSNP
rs901450363 13 dbSNP
rs538553306 22 dbSNP
Putative Targets

Gene Information
Gene Symbol LEPROT   
Synonyms LEPR, OB-RGRP, OBRGRP, VPS55
Description leptin receptor overlapping transcript
Transcript NM_017526   
Expression
Putative miRNA Targets on LEPROT
3'UTR of LEPROT
(miRNA target sites are highlighted)
>LEPROT|NM_017526|3'UTR
   1 CACTTTATTCTGATTACAGTGCATTGAATTTCTTAGAACTCATACTATCTGTATACATGTGCACATGCGGCATTTTACTA
  81 TGAAATTTAATATGCTGGGTTTTTTAATACCTTTATATATCATGTTCACTTTAAGAAAGACTTCATAAGTAGGAGATGAG
 161 TTTTATTCTCAGCAAATAGACCTGTCAAATTTAGATTATGTTACTCAAATTATGTTACTTGTTTGGCTGTTCATGTAGTC
 241 ACGGTGCTCTCAGAAAATATATTAACGCAGTCTTGTAGGCAGCTGCCACCTTATGCAGTGCATCGAAACCTTTTGCTTGG
 321 GGATGTGCTTGGAGAGGCAGATAACGCTGAAGCAGGCCTCTCATGACCCAGGAAGGCCGGGGTGGATCCCTCTTTGTGTT
 401 GTAGTCCATGCTATTAAAAGTGTGGCCCACAGACCAAGAGCCTCAACATTTCCTAGAGCCTTATTAGAAATGCAGAATCT
 481 GAAGCCCCACTCTGGACCCAGGACATTTTGATGAGATCCAAAGGAGTTGTATGCACATGAAAGTTTGAGAAGCATCATCA
 561 TAGAGAAGTAAACATCACACCCAACTTCCTTATCTTTCCAGTGGCTAAACCACTTAACCTCTCTGGGTGTTACCTGCTCA
 641 TTTGTTTAAAAAAAAAAAAAAAGTCTCACCTGCTTTCATGCTGAGGACAAGTTCAGATGTTCAAGCCTATAATATTTAGG
 721 CAGTTCCTCAAATTTATGAAAAGTGTTCTCAGAATTGGGAGACAGTCAAAGGGTACAAAGCCTCAGTTAGGAGGAATAAG
 801 TGTGATTTTTTTTTAAAGATCACTTGCACAGCATGCTAAATATAGGAATAATTGAATGTATATTTCAATATTGCTAAGAG
 881 AGTAAATTTCTAATGTTCTCATAAAAAAGTTAAATATTTGAGATCATATGTTAATTAGTGTAATCATTCCACCTTATATT
 961 CAAAAATCATAAAACCGTATTGTACCCTATAAAAATATACAATAATTTGTCAATATATAATCAAAATAAAAAACAAAACA
1041 TACTCTCTCCCCCAAAAAAACATCTCAGTGGGGAACAGATGTATCTTTTCATCTGAAAGACAATGCTGGGGGAAGAGCTC
1121 CACTGAGATGCGGGCAGGGAGGCTGGGCTCGAGCCAGCCCCTGCGTTAGCAGGAGGGGGAGAACAGATAGGTAACTCTTT
1201 TACATTTCCTTTATGATCTGGCACTTCTCCCCAGCTCCTTCCCTCTGCCCCCCACCCCTACTCCTCAACAGTTCTGGTTT
1281 GCCCTGACTTCTCTACGGCTCTGGCTTCTTCCCGAAGAGATATAGGAGCCATGTAAGCACGCAGTGGGTGAACTGCTTAA
1361 TTTCACTACGTGTTGATGTACTTGTCTTCCGTCCTGTAGGTCTTTTCTATATAACTTTATGCCACCCTTAAATGAATCAT
1441 TGGGTATACCTGTCATGTTGGATCCTGTAATCACAGTTTTCCCTGCTCACCTTTTTGTCTAAGATCTATTGAGAAAGGGA
1521 AATATGGGAAGGAGAACCATTTGATCAGAATACAACCAATAGTCTTTAAGCATTGTTAAAGTATGAAACTGAAATACATT
1601 CAAAACACTTAATCCTTGAGGCTTGTGATCTGAGTAATTAGCAGGTATGATGCTGGGACTGGAAAATAGAAAGTAATAAC
1681 TAAAGGGTTAATGTGCAACGTTATTTTTTGGCCTTGTTCATGATTTTATGTTTTCAGTGTCCTGTGTACATATAGAATTG
1761 TTAAAGTTGTCATTTCCAATATTTATATTAGAAAAATTATTTAGATACTTTATAATTTTAACCGGCATTTTTAATAATGA
1841 CACTTGCATTTATTGTATTGTAATAAATTTCACTTTTAACTTTAAAAGTTTAACTTTAAAATTTTTTTGTGATGTTGCCT
1921 TGCCTGAAAAGATAACAAAAATGAGAGAATTTCTTGATGTTTTAAAATGGGCAGTTTTGAGCAATAATCTGTCCTAACAG
2001 AACAGTAGCAATAAGTTTTAGGATACCATCTTGAATGTCTAGTTGGTGTGCAATAGCTTTTCTTTCTAAGATGGCAATAA
2081 TGATTCATTTCTACTACATTTTGCAAAAGTGTTTTTGTTGCTTATACACATTTTCAATAACCAAGGTAGCCTTCATATGT
2161 AGCCTTAAAGCATTACCTCTTGATTGTATCTTTAGATTGATATAAAGTACTTGCATATAGAGTATTTGAAGTGATAGATT
2241 ATTAGATTTGCTCTATGTCTGAAAAGAGAGCTATTCTGCAGTGCCTAAATATCATTTAAACAGTAAATATTAATAGGAAA
2321 TATTGCTATATCTGAATATATAATACAAAAGTTTGATCATGGTGACACAAATGTTGGACATTTTTTTCCTTATAAAAGGC
2401 TCTTTTTTTATATATTGTACAATATATTTGGAGATTCAGAGCATAGTGACTATAGTCGAAAACTGAGATTGCACTTCCAA
2481 AATTGGCCACAAGTAAATAATCTTATGAAGGGATTCTTTATCATGTTTCAAACAAGTGGGTTACAAGCAGACTTTGAGAC
2561 ACTTTTCCACAGAAACAATACTATGAATTGGTGATTGAGTTCCCAGGCCAAGCCTCCCTCAACAGGTTCAACTCTAATAT
2641 ACCTAACCTGTGATACTGAAGGTGCCTGCCTGAGTTTTGGGTCTCTGAGACAGGGTAGTGTGAGTAGTTTGGAGGAAGGA
2721 CAGTGCAACTTTCCACCCCTTTTCCTAAGAACAAGGTCTTTCTCCTTTTAATTTTTCCACTCATTTTCACCTCCTAATGC
2801 CCTTGAGATCCAGGTACACTCCTGGGAGTTTTGTTCACCTCTCCCAACTGAGAACCTTCCCACTGGGCTCCATCCTCCCT
2881 CCTGAGGTTCTTCATATTCCAGAGTCACCCACCCTTCTCCTCCCATTAGTCAGTTCTCTAAGTACAGCTGATGTCATGTG
2961 GTGCTGAGAAGAAAGCAGATCACACTTCATCACAGAAAGAATGCCTTGTGATTATCTTCTCCACATCTGAAATTCCTTTT
3041 GACACCTGCATTGGGCCGACTGCCATTCCCATGACTGCTGCACCTGCGTTTTTAGAGAATGCCTCATAACCCACTGATTC
3121 TCATTCACAGAGAATGGGAGAACGGAATGAAGAAAGATTCCAGCAGCTTATAGAAGGATAGCAATATTTTGGGACAGGGA
3201 AAATCCTGTCATACCTCATCTCTTCCTCAGGAGGAGTTCTGAGCTGGTCCTGCTTTTCATAGTTGTTTCTTTTCTTCCAC
3281 TTAAGAACTCATAGATTTTTCTTACTGTCCTAAGGAAGTCCTTACCTCTGAGGTATCTCCTCAATGAATACTGTTTTCAA
3361 GGCTGAAATAGTTCATTATGTTAATAACCTTCTTTATGTTCTCAGGGAAATGCTTAGGTGGTGTCACAAAATGTGCCTTT
3441 TCTTTTCTTTTTTTTTTTTTTTTTTTGAGGCAGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGC
3521 TCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGGAGCTGGGACTACAGGCTCCCGCC
3601 ACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAAAGACGGGTTTCATCGTGTTAGCCAGGATGGTCTCGATCTCCTGAC
3681 CTCATGATCCGCCCGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACTGTGCCCAGCCAAAATGTGCCTTT
3761 GCAAAGTTTGCGAAATCAGATTTTGTATCCCAATAGAACCAAAATATTTATGAGGATGCTAGCATTTTCCAAGCATAGTA
3841 ATTAGTTCACAACTGAGAAATATTATGTCTGTAGTAGATAAATATTAGTTGTGCATTTTAATTTAATTCTCCTTTTTCCA
3921 TTTTGTCTCATGAAGTACCTTATTGCAAAAATCCCACTGAGTAATAGCTCATAAATTATAATCTTTCAAATAGCCATGCT
4001 ACCAGCGTACAACAGTGATACATGTAACCCCAAATGTGATGTGAGAGGACGATTACTTTGTAAATAAAACTTGTTATTGA
4081 CATTTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' guUUUCAUUA-ACGG-CCAAAAAc 5'
            ||  |||| |||: ||||||| 
Target 5' gaAATTTAATATGCTGGGTTTTTt 3'
82 - 105 164.00 -9.00
2
miRNA  3' guuuucAUUAA---CGGCC--AAAAAc 5'
                |||||    ||||  ||||| 
Target 5' actttaTAATTTTAACCGGCATTTTTa 3'
1807 - 1833 120.00 -6.20
3
miRNA  3' guuuucauuaacggcCAAAAAc 5'
                         |||||| 
Target 5' acattttgcaaaagtGTTTTTg 3'
2096 - 2117 120.00 -9.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31513490 28 COSMIC
COSN30115066 33 COSMIC
COSN30486087 42 COSMIC
COSN31500783 50 COSMIC
COSN31603464 70 COSMIC
COSN30123597 85 COSMIC
COSN30178725 95 COSMIC
COSN32057556 268 COSMIC
COSN22631505 290 COSMIC
COSN8504211 358 COSMIC
COSN22176200 404 COSMIC
COSN16615734 613 COSMIC
COSN8143050 666 COSMIC
COSN20837430 766 COSMIC
COSN7277080 1294 COSMIC
COSN29293169 1376 COSMIC
COSN22176201 1543 COSMIC
COSN8504212 1602 COSMIC
COSN18785388 1615 COSMIC
COSN32057557 1719 COSMIC
COSN25707102 2034 COSMIC
COSN20742273 2436 COSMIC
COSN6041566 2703 COSMIC
COSN14668048 2790 COSMIC
COSN8504213 3350 COSMIC
COSN20090249 3448 COSMIC
COSN15607420 3453 COSMIC
COSN7277081 3491 COSMIC
COSN19405325 3671 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs41285426 2 dbSNP
rs1411458634 4 dbSNP
rs767044078 6 dbSNP
rs1398024969 7 dbSNP
rs1446024451 8 dbSNP
rs759450327 17 dbSNP
rs769836912 20 dbSNP
rs1419922011 24 dbSNP
rs376167161 27 dbSNP
rs1274422698 29 dbSNP
rs1310052666 29 dbSNP
rs374852614 33 dbSNP
rs762802635 39 dbSNP
rs1024100528 42 dbSNP
rs970737967 54 dbSNP
rs1461119473 66 dbSNP
rs911768540 69 dbSNP
rs1258757580 70 dbSNP
rs1311280797 75 dbSNP
rs1298651280 92 dbSNP
rs924220491 101 dbSNP
rs956926351 109 dbSNP
rs78237116 111 dbSNP
rs915418942 112 dbSNP
rs775089816 115 dbSNP
rs932101258 129 dbSNP
rs985914988 130 dbSNP
rs760500972 138 dbSNP
rs1887285 146 dbSNP
rs201723526 149 dbSNP
rs750139573 149 dbSNP
rs143832926 153 dbSNP
rs377137502 160 dbSNP
rs1174204178 161 dbSNP
rs1481661925 163 dbSNP
rs559399801 165 dbSNP
rs1465528288 167 dbSNP
rs1487605665 169 dbSNP
rs1303183116 174 dbSNP
rs894131005 177 dbSNP
rs1264421836 178 dbSNP
rs1205206474 182 dbSNP
rs1482609264 199 dbSNP
rs1253935196 200 dbSNP
rs1013996285 205 dbSNP
rs529698034 210 dbSNP
rs9282772 219 dbSNP
rs897785015 229 dbSNP
rs12063858 234 dbSNP
rs1389876983 235 dbSNP
rs79395241 237 dbSNP
rs1342300506 243 dbSNP
rs999621499 244 dbSNP
rs894312384 251 dbSNP
rs1301356224 253 dbSNP
rs1031272324 259 dbSNP
rs531918225 260 dbSNP
rs1430184837 261 dbSNP
rs1230345828 264 dbSNP
rs550053880 267 dbSNP
rs7883 268 dbSNP
rs953356743 299 dbSNP
rs9282773 306 dbSNP
rs1194496299 322 dbSNP
rs1031007663 326 dbSNP
rs1211484045 340 dbSNP
rs1253440307 342 dbSNP
rs1204968357 343 dbSNP
rs550016361 346 dbSNP
rs1256958602 347 dbSNP
rs940523590 348 dbSNP
rs7602 350 dbSNP
rs1270770531 355 dbSNP
rs1243936921 359 dbSNP
rs1339996840 360 dbSNP
rs1193658788 363 dbSNP
rs1454609517 371 dbSNP
rs1250620819 379 dbSNP
rs1330863240 379 dbSNP
rs1045895 380 dbSNP
rs756470534 383 dbSNP
rs1169052375 384 dbSNP
rs1457866092 390 dbSNP
rs1352153501 391 dbSNP
rs1367197735 393 dbSNP
rs1184911206 400 dbSNP
rs141394315 402 dbSNP
rs894154413 403 dbSNP
rs1013860768 405 dbSNP
rs1237254059 415 dbSNP
rs1432521738 422 dbSNP
rs1176391457 439 dbSNP
rs944456242 448 dbSNP
rs1273418752 454 dbSNP
rs1176779179 459 dbSNP
rs1354200387 467 dbSNP
rs971737163 470 dbSNP
rs1045471515 487 dbSNP
rs1460284440 490 dbSNP
rs918931626 497 dbSNP
rs902919504 505 dbSNP
rs930267192 517 dbSNP
rs1440248221 522 dbSNP
rs1337710384 528 dbSNP
rs11558301 537 dbSNP
rs1330010380 544 dbSNP
rs78387960 546 dbSNP
rs1411962103 552 dbSNP
rs1386500079 553 dbSNP
rs999653999 557 dbSNP
rs1281416493 559 dbSNP
rs1424822915 560 dbSNP
rs1379120308 562 dbSNP
rs1031556034 567 dbSNP
rs1367074829 575 dbSNP
rs894355435 581 dbSNP
rs1220299663 586 dbSNP
rs948611904 593 dbSNP
rs1470971506 594 dbSNP
rs1304063482 598 dbSNP
rs1233056497 600 dbSNP
rs1045573447 611 dbSNP
rs1306060626 612 dbSNP
rs906657338 620 dbSNP
rs1223124129 623 dbSNP
rs1360303893 626 dbSNP
rs1240462980 642 dbSNP
rs1279079690 648 dbSNP
rs36067009 648 dbSNP
rs71792433 648 dbSNP
rs77924167 648 dbSNP
rs869087722 648 dbSNP
rs869130191 648 dbSNP
rs1003635317 649 dbSNP
rs1273402144 650 dbSNP
rs1406067970 656 dbSNP
rs1483165078 661 dbSNP
rs1031051741 663 dbSNP
rs149058376 663 dbSNP
rs1451856408 664 dbSNP
rs1266135831 665 dbSNP
rs554831303 668 dbSNP
rs576288164 670 dbSNP
rs1191638178 673 dbSNP
rs1011293484 682 dbSNP
rs1476955709 684 dbSNP
rs145121923 688 dbSNP
rs138922214 689 dbSNP
rs1167706673 690 dbSNP
rs953738729 695 dbSNP
rs142053507 710 dbSNP
rs1213755948 715 dbSNP
rs1448802735 723 dbSNP
rs1431853200 725 dbSNP
rs1007765269 729 dbSNP
rs9436742 730 dbSNP
rs778480185 733 dbSNP
rs1321918816 737 dbSNP
rs1349310362 739 dbSNP
rs966149585 740 dbSNP
rs987445315 748 dbSNP
rs1295760806 749 dbSNP
rs566792226 759 dbSNP
rs114328096 763 dbSNP
rs1257534950 779 dbSNP
rs559050637 785 dbSNP
rs915857187 785 dbSNP
rs1298792899 788 dbSNP
rs1045628769 806 dbSNP
rs771686222 806 dbSNP
rs1180225500 809 dbSNP
rs972166165 815 dbSNP
rs920460412 818 dbSNP
rs145686430 819 dbSNP
rs541510717 820 dbSNP
rs1287309344 828 dbSNP
rs138179297 830 dbSNP
rs1204724879 832 dbSNP
rs1052532152 833 dbSNP
rs1294138084 837 dbSNP
rs991842846 843 dbSNP
rs1362098781 848 dbSNP
rs1283111289 852 dbSNP
rs1449753464 857 dbSNP
rs915801399 869 dbSNP
rs1248003312 877 dbSNP
rs757356631 892 dbSNP
rs531788382 893 dbSNP
rs1044114743 896 dbSNP
rs188944541 899 dbSNP
rs571919090 901 dbSNP
rs1442798035 903 dbSNP
rs1245261023 904 dbSNP
rs532661415 905 dbSNP
rs547793379 908 dbSNP
rs1451109848 910 dbSNP
rs1457628645 921 dbSNP
rs1249951559 922 dbSNP
rs1207000299 926 dbSNP
rs781047620 931 dbSNP
rs1019116871 962 dbSNP
rs1243220909 967 dbSNP
rs966201626 969 dbSNP
rs1413384737 970 dbSNP
rs181493478 977 dbSNP
rs114235002 978 dbSNP
rs375924115 990 dbSNP
rs1166972990 991 dbSNP
rs1011062457 1001 dbSNP
rs1349237563 1003 dbSNP
rs1343550086 1008 dbSNP
rs565057773 1013 dbSNP
rs778788239 1016 dbSNP
rs1026093499 1021 dbSNP
rs951871412 1022 dbSNP
rs889330823 1027 dbSNP
rs1179336892 1028 dbSNP
rs1481158136 1029 dbSNP
rs1268889786 1031 dbSNP
rs1220869438 1035 dbSNP
rs1361036646 1035 dbSNP
rs1291899750 1041 dbSNP
rs1450959050 1045 dbSNP
rs1008908854 1046 dbSNP
rs1282018873 1048 dbSNP
rs915556628 1049 dbSNP
rs749200688 1054 dbSNP
rs969710296 1054 dbSNP
rs928505568 1056 dbSNP
rs77709662 1062 dbSNP
rs149557240 1067 dbSNP
rs934507801 1078 dbSNP
rs1018987634 1082 dbSNP
rs1377966121 1083 dbSNP
rs1362340538 1084 dbSNP
rs144181350 1090 dbSNP
rs1161553084 1091 dbSNP
rs1420096710 1094 dbSNP
rs1429000273 1101 dbSNP
rs1197652460 1103 dbSNP
rs962036575 1104 dbSNP
rs972581251 1109 dbSNP
rs555665919 1115 dbSNP
rs1262193894 1118 dbSNP
rs1216025585 1119 dbSNP
rs1311436368 1120 dbSNP
rs537242608 1128 dbSNP
rs951983928 1129 dbSNP
rs1225074362 1130 dbSNP
rs746111656 1132 dbSNP
rs1277475794 1133 dbSNP
rs1326529628 1135 dbSNP
rs1290910114 1136 dbSNP
rs915832343 1136 dbSNP
rs949937351 1140 dbSNP
rs1007493303 1143 dbSNP
rs1405573053 1151 dbSNP
rs186487517 1152 dbSNP
rs961840898 1156 dbSNP
rs1268692099 1157 dbSNP
rs1193094522 1158 dbSNP
rs924321750 1164 dbSNP
rs934328186 1165 dbSNP
rs1460618835 1166 dbSNP
rs375637482 1176 dbSNP
rs892859553 1177 dbSNP
rs1225129533 1182 dbSNP
rs577080167 1196 dbSNP
rs1022687765 1199 dbSNP
rs534584276 1214 dbSNP
rs946875538 1219 dbSNP
rs1236731033 1222 dbSNP
rs1382328455 1226 dbSNP
rs1334951927 1232 dbSNP
rs1471198508 1234 dbSNP
rs1407259940 1237 dbSNP
rs1050548348 1253 dbSNP
rs567637781 1254 dbSNP
rs1009190333 1261 dbSNP
rs574086065 1262 dbSNP
rs1405812433 1267 dbSNP
rs1185022175 1269 dbSNP
rs17750 1272 dbSNP
rs1160505332 1277 dbSNP
rs1391503068 1282 dbSNP
rs1468749962 1288 dbSNP
rs1341394148 1296 dbSNP
rs993482849 1297 dbSNP
rs780318871 1298 dbSNP
rs1229307290 1307 dbSNP
rs776349282 1312 dbSNP
rs373378880 1314 dbSNP
rs1448279051 1315 dbSNP
rs1285605267 1321 dbSNP
rs746839035 1324 dbSNP
rs1389960380 1326 dbSNP
rs574956662 1327 dbSNP
rs1168997020 1329 dbSNP
rs1288852332 1333 dbSNP
rs1022787888 1341 dbSNP
rs544013451 1342 dbSNP
rs981349085 1350 dbSNP
rs1331105125 1369 dbSNP
rs1536466 1371 dbSNP
rs532870363 1372 dbSNP
rs989791512 1378 dbSNP
rs1179415069 1380 dbSNP
rs1439329955 1381 dbSNP
rs1442804430 1391 dbSNP
rs1221610265 1392 dbSNP
rs1490220983 1394 dbSNP
rs1046011 1395 dbSNP
rs932449901 1397 dbSNP
rs1049500950 1410 dbSNP
rs1248208193 1411 dbSNP
rs943403506 1412 dbSNP
rs1040335091 1421 dbSNP
rs902144567 1422 dbSNP
rs929553608 1424 dbSNP
rs1047944827 1431 dbSNP
rs1404908078 1432 dbSNP
rs1472279573 1441 dbSNP
rs910747333 1450 dbSNP
rs1304436393 1454 dbSNP
rs887959523 1462 dbSNP
rs1156443027 1464 dbSNP
rs1414337199 1466 dbSNP
rs775621467 1484 dbSNP
rs1364136467 1485 dbSNP
rs944842878 1488 dbSNP
rs1172563425 1489 dbSNP
rs1403282427 1498 dbSNP
rs1270870546 1505 dbSNP
rs370553100 1507 dbSNP
rs1335733732 1509 dbSNP
rs1283878170 1519 dbSNP
rs1040661194 1530 dbSNP
rs1408893196 1538 dbSNP
rs1308079016 1542 dbSNP
rs1289411477 1554 dbSNP
rs1035345977 1559 dbSNP
rs763148303 1560 dbSNP
rs1285737309 1561 dbSNP
rs1436658899 1585 dbSNP
rs1230902976 1601 dbSNP
rs989136748 1608 dbSNP
rs1315842708 1609 dbSNP
rs769352091 1613 dbSNP
rs1402106940 1619 dbSNP
rs367947175 1621 dbSNP
rs1345405053 1633 dbSNP
rs898052436 1634 dbSNP
rs532431655 1635 dbSNP
rs764710925 1635 dbSNP
rs993909973 1635 dbSNP
rs1049024074 1637 dbSNP
rs199535824 1640 dbSNP
rs148696149 1641 dbSNP
rs1478426449 1645 dbSNP
rs910661264 1646 dbSNP
rs943455934 1668 dbSNP
rs1012993786 1672 dbSNP
rs1268939560 1687 dbSNP
rs1203496456 1696 dbSNP
rs1321850745 1698 dbSNP
rs772539970 1700 dbSNP
rs561109788 1701 dbSNP
rs1449950572 1704 dbSNP
rs1198693051 1711 dbSNP
rs971234864 1712 dbSNP
rs1361810477 1717 dbSNP
rs7661 1719 dbSNP
rs1479180132 1724 dbSNP
rs1031568967 1735 dbSNP
rs1335654002 1738 dbSNP
rs75276031 1743 dbSNP
rs1389989857 1753 dbSNP
rs1408004248 1754 dbSNP
rs1176462343 1756 dbSNP
rs990463181 1764 dbSNP
rs1417225610 1777 dbSNP
rs1166248595 1778 dbSNP
rs1428697866 1801 dbSNP
rs1476427116 1802 dbSNP
rs942215300 1804 dbSNP
rs1044564955 1807 dbSNP
rs914280706 1819 dbSNP
rs953822855 1822 dbSNP
rs537115453 1824 dbSNP
rs1322758898 1825 dbSNP
rs552369138 1828 dbSNP
rs1331590790 1835 dbSNP
rs1438579964 1843 dbSNP
rs1271432223 1847 dbSNP
rs1295127074 1869 dbSNP
rs1342248685 1889 dbSNP
rs912286337 1889 dbSNP
rs944873743 1897 dbSNP
rs1341273594 1902 dbSNP
rs891485744 1902 dbSNP
rs1450043721 1910 dbSNP
rs1040527132 1911 dbSNP
rs1009876464 1914 dbSNP
rs919511713 1922 dbSNP
rs929609487 1923 dbSNP
rs1352755018 1924 dbSNP
rs1330812617 1926 dbSNP
rs1354284786 1928 dbSNP
rs553726985 1937 dbSNP
rs887810180 1948 dbSNP
rs570530171 1953 dbSNP
rs1443040357 1954 dbSNP
rs1453802045 1955 dbSNP
rs534960076 1960 dbSNP
rs1416141415 1963 dbSNP
rs1044475510 1967 dbSNP
rs1182815256 1969 dbSNP
rs757639906 1970 dbSNP
rs1231741433 1977 dbSNP
rs968647042 1979 dbSNP
rs115955532 1992 dbSNP
rs965151701 1995 dbSNP
rs1361168112 1999 dbSNP
rs1312975421 2010 dbSNP
rs1168798781 2012 dbSNP
rs1374459152 2025 dbSNP
rs1223071972 2027 dbSNP
rs1370872772 2035 dbSNP
rs1299868966 2036 dbSNP
rs1456112530 2044 dbSNP
rs1410378867 2054 dbSNP
rs1031535664 2060 dbSNP
rs923327685 2071 dbSNP
rs1422755440 2072 dbSNP
rs574345236 2075 dbSNP
rs1165744154 2078 dbSNP
rs1418899988 2080 dbSNP
rs950804262 2088 dbSNP
rs147407267 2094 dbSNP
rs1402881508 2096 dbSNP
rs77453557 2104 dbSNP
rs953705811 2106 dbSNP
rs1219691786 2107 dbSNP
rs985100009 2122 dbSNP
rs1265708562 2123 dbSNP
rs1044633032 2124 dbSNP
rs1019376132 2127 dbSNP
rs1338900874 2129 dbSNP
rs927448029 2131 dbSNP
rs965092620 2132 dbSNP
rs189785466 2138 dbSNP
rs575019647 2141 dbSNP
rs546172024 2149 dbSNP
rs181037966 2150 dbSNP
rs1207319977 2158 dbSNP
rs1453346982 2168 dbSNP
rs574671275 2171 dbSNP
rs1343589732 2172 dbSNP
rs1161843746 2183 dbSNP
rs1458083711 2187 dbSNP
rs891538312 2189 dbSNP
rs1197859204 2196 dbSNP
rs929446429 2200 dbSNP
rs1267471970 2202 dbSNP
rs750818113 2203 dbSNP
rs1185388154 2214 dbSNP
rs1484689502 2215 dbSNP
rs376661341 2216 dbSNP
rs909427644 2218 dbSNP
rs368486762 2228 dbSNP
rs1006817726 2235 dbSNP
rs1044337412 2236 dbSNP
rs1254562390 2237 dbSNP
rs907204388 2254 dbSNP
rs938805942 2258 dbSNP
rs1225242609 2262 dbSNP
rs1421687839 2271 dbSNP
rs1018110597 2287 dbSNP
rs1302079660 2291 dbSNP
rs1381662439 2291 dbSNP
rs1360208765 2294 dbSNP
rs1053592689 2302 dbSNP
rs761079055 2303 dbSNP
rs139653513 2304 dbSNP
rs1174672338 2310 dbSNP
rs764400632 2316 dbSNP
rs889668112 2323 dbSNP
rs1030394598 2324 dbSNP
rs145178680 2329 dbSNP
rs757700562 2330 dbSNP
rs983889743 2341 dbSNP
rs1188769361 2349 dbSNP
rs1460743066 2359 dbSNP
rs1241062890 2360 dbSNP
rs1387842869 2362 dbSNP
rs1019325396 2363 dbSNP
rs965040092 2372 dbSNP
rs1250677890 2380 dbSNP
rs1290379834 2380 dbSNP
rs963668884 2381 dbSNP
rs1300164657 2393 dbSNP
rs980368875 2400 dbSNP
rs1395656890 2401 dbSNP
rs1335144193 2403 dbSNP
rs927501202 2403 dbSNP
rs1398090045 2410 dbSNP
rs938860120 2413 dbSNP
rs1298096076 2425 dbSNP
rs1057303310 2426 dbSNP
rs913013836 2428 dbSNP
rs972533194 2429 dbSNP
rs1025804531 2430 dbSNP
rs1391458126 2438 dbSNP
rs950928992 2442 dbSNP
rs1168613682 2447 dbSNP
rs1443662618 2451 dbSNP
rs1382945435 2453 dbSNP
rs1189432468 2458 dbSNP
rs1249781146 2464 dbSNP
rs985342075 2466 dbSNP
rs1193986330 2475 dbSNP
rs909473522 2476 dbSNP
rs1287867656 2478 dbSNP
rs949005513 2479 dbSNP
rs1276903968 2481 dbSNP
rs980318507 2482 dbSNP
rs560089156 2483 dbSNP
rs765756692 2484 dbSNP
rs945809559 2485 dbSNP
rs1043167867 2498 dbSNP
rs1211199293 2499 dbSNP
rs150951046 2502 dbSNP
rs1483138472 2506 dbSNP
rs1306973457 2514 dbSNP
rs1326722953 2514 dbSNP
rs1199465010 2526 dbSNP
rs938669708 2527 dbSNP
rs375424495 2537 dbSNP
rs780471575 2541 dbSNP
rs747642376 2547 dbSNP
rs901076256 2549 dbSNP
rs1164609033 2551 dbSNP
rs548617773 2554 dbSNP
rs1473034118 2563 dbSNP
rs1043246352 2564 dbSNP
rs139480138 2570 dbSNP
rs1472874222 2571 dbSNP
rs1006852762 2576 dbSNP
rs1161274231 2578 dbSNP
rs1040964866 2584 dbSNP
rs1288037106 2586 dbSNP
rs900867713 2594 dbSNP
rs758473162 2601 dbSNP
rs112862122 2607 dbSNP
rs1004969657 2609 dbSNP
rs1226871694 2614 dbSNP
rs994212259 2614 dbSNP
rs1352929636 2616 dbSNP
rs1289523137 2623 dbSNP
rs1403842139 2626 dbSNP
rs1016737649 2627 dbSNP
rs185071435 2638 dbSNP
rs1405632064 2641 dbSNP
rs1383715876 2647 dbSNP
rs552381922 2662 dbSNP
rs1458602720 2665 dbSNP
rs980086397 2668 dbSNP
rs1006399625 2671 dbSNP
rs1034624196 2683 dbSNP
rs960276569 2687 dbSNP
rs1480177106 2701 dbSNP
rs1245077722 2708 dbSNP
rs1408278845 2710 dbSNP
rs1307497632 2719 dbSNP
rs993030539 2723 dbSNP
rs570673588 2726 dbSNP
rs1230718568 2737 dbSNP
rs913409939 2740 dbSNP
rs1299831471 2748 dbSNP
rs55889533 2756 dbSNP
rs1234443573 2765 dbSNP
rs978556472 2771 dbSNP
rs1283755250 2773 dbSNP
rs925667026 2779 dbSNP
rs970180662 2780 dbSNP
rs980347968 2781 dbSNP
rs867440537 2783 dbSNP
rs1343446455 2784 dbSNP
rs1276113641 2787 dbSNP
rs546349366 2801 dbSNP
rs1325546716 2808 dbSNP
rs59422730 2811 dbSNP
rs190922934 2819 dbSNP
rs928860022 2837 dbSNP
rs1389069307 2838 dbSNP
rs1175382526 2844 dbSNP
rs556568930 2845 dbSNP
rs960086466 2853 dbSNP
rs568746899 2861 dbSNP
rs913323099 2862 dbSNP
rs148242242 2863 dbSNP
rs1176483615 2882 dbSNP
rs754853820 2888 dbSNP
rs1186887857 2895 dbSNP
rs1428055164 2900 dbSNP
rs1168215988 2903 dbSNP
rs1249072265 2910 dbSNP
rs1203364997 2914 dbSNP
rs1047382418 2916 dbSNP
rs947491829 2920 dbSNP
rs1043145132 2923 dbSNP
rs781068379 2926 dbSNP
rs911081281 2927 dbSNP
rs1371175918 2938 dbSNP
rs1281335639 2939 dbSNP
rs1219370079 2943 dbSNP
rs181769435 2944 dbSNP
rs1295005663 2951 dbSNP
rs1230185024 2963 dbSNP
rs1365422626 2965 dbSNP
rs1335846323 2969 dbSNP
rs1040998992 2971 dbSNP
rs1445465129 2975 dbSNP
rs1360881500 2996 dbSNP
rs1334707398 2999 dbSNP
rs561132165 3026 dbSNP
rs901069811 3030 dbSNP
rs1415160695 3037 dbSNP
rs557561963 3045 dbSNP
rs1166754432 3046 dbSNP
rs1005768575 3047 dbSNP
rs993852496 3049 dbSNP
rs145446742 3058 dbSNP
rs888114647 3059 dbSNP
rs185947146 3060 dbSNP
rs1034344525 3072 dbSNP
rs374805830 3082 dbSNP
rs1437705609 3084 dbSNP
rs1390971943 3088 dbSNP
rs55655800 3089 dbSNP
rs1313907113 3090 dbSNP
rs1023325187 3099 dbSNP
rs1381042749 3102 dbSNP
rs543173662 3106 dbSNP
rs1488115791 3110 dbSNP
rs1191758800 3117 dbSNP
rs1368562449 3129 dbSNP
rs1306278007 3141 dbSNP
rs1254588540 3144 dbSNP
rs1001634398 3145 dbSNP
rs1164302826 3146 dbSNP
rs1035906574 3161 dbSNP
rs979328455 3165 dbSNP
rs1188126550 3168 dbSNP
rs1182761302 3172 dbSNP
rs543595063 3177 dbSNP
rs1250171674 3180 dbSNP
rs1183786552 3181 dbSNP
rs989069077 3186 dbSNP
rs1411910323 3198 dbSNP
rs1290643657 3199 dbSNP
rs942443387 3201 dbSNP
rs1323107635 3215 dbSNP
rs1290336765 3223 dbSNP
rs1222940355 3232 dbSNP
rs769677957 3245 dbSNP
rs913263851 3247 dbSNP
rs1290136130 3250 dbSNP
rs1162730455 3253 dbSNP
rs564939195 3255 dbSNP
rs1351153139 3262 dbSNP
rs975097284 3266 dbSNP
rs1458853890 3276 dbSNP
rs968730571 3280 dbSNP
rs1456609537 3289 dbSNP
rs978869671 3295 dbSNP
rs746653784 3296 dbSNP
rs922273401 3296 dbSNP
rs911281066 3302 dbSNP
rs1165943271 3306 dbSNP
rs933634089 3315 dbSNP
rs942530417 3319 dbSNP
rs1410483526 3321 dbSNP
rs1161976478 3322 dbSNP
rs542518042 3324 dbSNP
rs1266094095 3334 dbSNP
rs908442434 3336 dbSNP
rs1434865368 3337 dbSNP
rs1489267267 3341 dbSNP
rs1246915986 3346 dbSNP
rs1298865307 3359 dbSNP
rs922553991 3362 dbSNP
rs1326783431 3366 dbSNP
rs559821775 3375 dbSNP
rs1287118838 3377 dbSNP
rs1322677485 3381 dbSNP
rs1300680715 3385 dbSNP
rs114881303 3392 dbSNP
rs899283707 3395 dbSNP
rs190608216 3422 dbSNP
rs61779771 3430 dbSNP
rs1055850050 3432 dbSNP
rs1161778104 3437 dbSNP
rs1194593143 3437 dbSNP
rs1463342375 3440 dbSNP
rs1173418548 3443 dbSNP
rs898135457 3443 dbSNP
rs1434394064 3444 dbSNP
rs1425484982 3445 dbSNP
rs1207852381 3447 dbSNP
rs1227981259 3448 dbSNP
rs1275658095 3448 dbSNP
rs1313994545 3448 dbSNP
rs1363212534 3448 dbSNP
rs1402204804 3448 dbSNP
rs1436263288 3448 dbSNP
rs1491315313 3448 dbSNP
rs60757318 3448 dbSNP
rs774990810 3448 dbSNP
rs878932970 3448 dbSNP
rs1491291969 3449 dbSNP
rs34188593 3449 dbSNP
rs1248450965 3450 dbSNP
rs1467180980 3450 dbSNP
rs201115929 3451 dbSNP
rs201944208 3452 dbSNP
rs941006231 3452 dbSNP
rs7416260 3453 dbSNP
rs895839901 3453 dbSNP
rs78249015 3454 dbSNP
rs904911825 3455 dbSNP
rs1001665616 3456 dbSNP
rs1035853092 3457 dbSNP
rs1340377321 3461 dbSNP
rs1300093101 3463 dbSNP
rs1457214988 3466 dbSNP
rs1228666949 3467 dbSNP
rs80096549 3467 dbSNP
rs1364118368 3468 dbSNP
rs1224972239 3469 dbSNP
rs1321638477 3469 dbSNP
rs1276211784 3470 dbSNP
rs1347377828 3472 dbSNP
rs528551367 3480 dbSNP
rs1398336080 3481 dbSNP
rs968029559 3487 dbSNP
rs1306883829 3488 dbSNP
rs1427243555 3489 dbSNP
rs1372093384 3490 dbSNP
rs1000401626 3492 dbSNP
rs546414682 3496 dbSNP
rs1366531079 3499 dbSNP
rs1377762946 3506 dbSNP
rs895982424 3512 dbSNP
rs1250974169 3513 dbSNP
rs386631967 3517 dbSNP
rs9436743 3518 dbSNP
rs1482099755 3519 dbSNP
rs529187258 3520 dbSNP
rs752483904 3530 dbSNP
rs1326950005 3535 dbSNP
rs969136627 3536 dbSNP
rs1208100066 3540 dbSNP
rs1284675777 3542 dbSNP
rs550450026 3543 dbSNP
rs568879392 3550 dbSNP
rs539063462 3551 dbSNP
rs1351772702 3552 dbSNP
rs975149973 3559 dbSNP
rs1483591055 3562 dbSNP
rs1388058014 3564 dbSNP
rs976826740 3573 dbSNP
rs557692955 3574 dbSNP
rs922325887 3575 dbSNP
rs955070122 3588 dbSNP
rs1458219874 3589 dbSNP
rs1411206354 3592 dbSNP
rs183589068 3595 dbSNP
rs929811409 3598 dbSNP
rs1254116901 3599 dbSNP
rs908494917 3605 dbSNP
rs941267776 3606 dbSNP
rs6658922 3607 dbSNP
rs1410537986 3608 dbSNP
rs1268103686 3611 dbSNP
rs1227115110 3613 dbSNP
rs1331754359 3619 dbSNP
rs1279645843 3622 dbSNP
rs1435111858 3625 dbSNP
rs1325080962 3626 dbSNP
rs1329063762 3626 dbSNP
rs188130792 3633 dbSNP
rs575068789 3640 dbSNP
rs1044676956 3641 dbSNP
rs567575021 3651 dbSNP
rs1159275724 3666 dbSNP
rs1314169028 3670 dbSNP
rs1014283203 3671 dbSNP
rs939142270 3673 dbSNP
rs1056123660 3676 dbSNP
rs1469036525 3677 dbSNP
rs1042100252 3679 dbSNP
rs992996052 3680 dbSNP
rs1207153121 3690 dbSNP
rs1352524381 3691 dbSNP
rs1285573154 3692 dbSNP
rs1218175538 3695 dbSNP
rs896003113 3696 dbSNP
rs1342236569 3716 dbSNP
rs1277713315 3722 dbSNP
rs1010375585 3724 dbSNP
rs1276062160 3730 dbSNP
rs1348864333 3731 dbSNP
rs370266530 3733 dbSNP
rs113256767 3744 dbSNP
rs1295141758 3761 dbSNP
rs1000207814 3763 dbSNP
rs1436988159 3764 dbSNP
rs539052316 3772 dbSNP
rs370689197 3773 dbSNP
rs1414025636 3789 dbSNP
rs140662976 3793 dbSNP
rs762120769 3794 dbSNP
rs1477356533 3795 dbSNP
rs996956390 3800 dbSNP
rs1389768698 3801 dbSNP
rs976861678 3803 dbSNP
rs1187140922 3805 dbSNP
rs1451685680 3811 dbSNP
rs528544358 3816 dbSNP
rs1243250882 3819 dbSNP
rs564479875 3822 dbSNP
rs1441153616 3823 dbSNP
rs1280137592 3831 dbSNP
rs955122666 3834 dbSNP
rs1172330858 3835 dbSNP
rs1426392198 3863 dbSNP
rs1029715825 3864 dbSNP
rs1175140338 3877 dbSNP
rs908213668 3880 dbSNP
rs1230384562 3883 dbSNP
rs550341325 3886 dbSNP
rs1283334033 3887 dbSNP
rs1408721310 3889 dbSNP
rs982595176 3892 dbSNP
rs1314908867 3897 dbSNP
rs528609292 3903 dbSNP
rs1434301818 3904 dbSNP
rs1274015382 3909 dbSNP
rs1370229108 3912 dbSNP
rs1348342718 3919 dbSNP
rs1236692277 3920 dbSNP
rs926499345 3921 dbSNP
rs1341490229 3926 dbSNP
rs1196435634 3928 dbSNP
rs1411816050 3946 dbSNP
rs1275258697 3949 dbSNP
rs796404790 3957 dbSNP
rs991976512 3959 dbSNP
rs980652340 3961 dbSNP
rs1198844694 3978 dbSNP
rs1482426075 3980 dbSNP
rs926314054 3982 dbSNP
rs939008105 3983 dbSNP
rs1455857548 3993 dbSNP
rs1195067202 3996 dbSNP
rs1056631785 4007 dbSNP
rs540316448 4008 dbSNP
rs561589584 4011 dbSNP
rs946212018 4013 dbSNP
rs950184005 4015 dbSNP
rs1293797403 4021 dbSNP
rs1041857648 4025 dbSNP
rs1415527482 4040 dbSNP
rs904686740 4042 dbSNP
rs1000491367 4043 dbSNP
rs1039963929 4044 dbSNP
rs529048699 4046 dbSNP
rs1355272154 4047 dbSNP
rs1041763586 4051 dbSNP
rs1403955167 4052 dbSNP
rs1403480454 4063 dbSNP
rs998162041 4065 dbSNP
rs1472523863 4071 dbSNP
rs571795866 4071 dbSNP
rs935987371 4071 dbSNP
rs756453714 4075 dbSNP
rs1442691462 4078 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 54741.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_017526 | 3UTR | AUACUAUCUGUAUACAUGUGCACAUGCGGCAUUUUACUAUGAAAUUUAAUAUGCUGGGUUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAGAAAGACUUCAUAAGUAGGAGAUGAGUUUUAUUCUCAGCAAAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001198681 | 3UTR | AUAUGCUGGGUUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAGAAAGACUUCAUAAGUAGGAGAUGAGUUUUAUUCUCAGCAAAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_017526 | 3UTR | AUUUUACUAUGAAAUUUAAUAUGCUGGGUUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAGAAAGACUUCAUAAGUAGGAGAUGAGUUUUAUUCUCAGCAAAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_017526 | 3UTR | CUAUCUGUAUACAUGUGCACAUGCGGCAUUUUACUAUGAAAUUUAAUAUGCUGGGUUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAGAAAGACUUCAUAAGUAGGAGAUGAGUUUUAUUCUCAGCAAAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_017526 | 3UTR | CUGUAUACAUGUGCACAUGCGGCAUUUUACUAUGAAAUUUAAUAUGCUGGGUUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAGAAAGACUUCAUAAGUAGGAGAUGAGUUUUAUUCUCAGCAAAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_017526 | 3UTR | CAUACUAUCUGUAUACAUGUGCACAUGCGGCAUUUUACUAUGAAAUUUAAUAUGCUGGGUUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAGAAAGACUUCAUAAGUAGGAGAUGAGUUUUAUUCUCAGCAAAUAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000371065.4 | 3UTR | UUUUUUAAUACCUUUAUAUAUCAUGUUCACUUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
275 hsa-miR-548ac Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055863 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT074959 LEPROT leptin receptor overlapping transcript 2 2
MIRT076823 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT078708 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT099610 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT103362 CBX3 chromobox 3 2 2
MIRT111801 MPZL1 myelin protein zero like 1 2 2
MIRT114050 AKAP11 A-kinase anchoring protein 11 2 12
MIRT133719 SKI SKI proto-oncogene 2 2
MIRT136817 NHLRC3 NHL repeat containing 3 2 6
MIRT149926 LDLR low density lipoprotein receptor 2 2
MIRT166915 TNPO1 transportin 1 2 2
MIRT168142 SOX4 SRY-box 4 2 10
MIRT190787 STRN3 striatin 3 2 4
MIRT207471 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT250951 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT271993 ARF1 ADP ribosylation factor 1 2 4
MIRT282618 IGF1R insulin like growth factor 1 receptor 2 8
MIRT294153 ZNF845 zinc finger protein 845 2 2
MIRT309060 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318548 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT319752 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT331324 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT337204 TOMM20 translocase of outer mitochondrial membrane 20 2 6
MIRT346145 ALYREF Aly/REF export factor 2 2
MIRT347727 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT350503 MRGBP MRG domain binding protein 2 6
MIRT356409 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT357986 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT374399 M6PR mannose-6-phosphate receptor, cation dependent 2 6
MIRT442727 TMEM158 transmembrane protein 158 (gene/pseudogene) 2 2
MIRT443411 HMX3 H6 family homeobox 3 2 2
MIRT444408 FRMD5 FERM domain containing 5 2 2
MIRT444469 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444650 HSBP1 heat shock factor binding protein 1 2 2
MIRT444861 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT445685 TNFSF15 TNF superfamily member 15 2 2
MIRT446001 CD1D CD1d molecule 2 2
MIRT446074 RABIF RAB interacting factor 2 2
MIRT446308 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446432 ABHD2 abhydrolase domain containing 2 2 2
MIRT447269 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447759 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448161 P2RY10 purinergic receptor P2Y10 2 2
MIRT449049 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449275 PALM2 paralemmin 2 2 2
MIRT450122 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450155 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT451289 ZNF101 zinc finger protein 101 2 2
MIRT459253 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT462554 NUDT19 nudix hydrolase 19 2 2
MIRT464470 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465120 TSC22D2 TSC22 domain family member 2 2 4
MIRT467996 SKIL SKI like proto-oncogene 2 2
MIRT468718 SDC4 syndecan 4 2 2
MIRT469269 RHOB ras homolog family member B 2 2
MIRT470675 POLR2D RNA polymerase II subunit D 2 4
MIRT470723 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471438 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471502 PDE4D phosphodiesterase 4D 2 4
MIRT471988 NR2F2 nuclear receptor subfamily 2 group F member 2 2 4
MIRT472386 NEK7 NIMA related kinase 7 2 2
MIRT475028 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT479411 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT480514 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT481700 AR androgen receptor 2 2
MIRT482543 ACTB actin beta 2 4
MIRT482627 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT484725 INHBA inhibin beta A subunit 2 12
MIRT487778 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491883 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494653 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497366 SF1 splicing factor 1 2 2
MIRT499156 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502830 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502944 CDC37L1 cell division cycle 37 like 1 2 8
MIRT503942 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504235 MYO6 myosin VI 2 2
MIRT504453 MC2R melanocortin 2 receptor 2 2
MIRT506022 PURA purine rich element binding protein A 2 2
MIRT508028 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508299 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT511515 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT512307 AMER1 APC membrane recruitment protein 1 2 6
MIRT514565 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515657 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518429 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT520378 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT521604 PSMA2 proteasome subunit alpha 2 2 4
MIRT521725 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 4
MIRT522579 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT522731 LRRC55 leucine rich repeat containing 55 2 8
MIRT524547 CDC5L cell division cycle 5 like 2 4
MIRT525371 SYNM synemin 2 2
MIRT526489 PPIA peptidylprolyl isomerase A 2 4
MIRT527197 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT527285 FBLN2 fibulin 2 2 2
MIRT527383 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527409 SMU1 DNA replication regulator and spliceosomal factor 2 6
MIRT527454 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528348 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529104 ZNF100 zinc finger protein 100 2 2
MIRT529317 ATRNL1 attractin like 1 2 2
MIRT529328 PDE5A phosphodiesterase 5A 2 2
MIRT529750 SEL1L SEL1L ERAD E3 ligase adaptor subunit 2 2
MIRT530277 MKRN3 makorin ring finger protein 3 2 2
MIRT531415 TMEM18 transmembrane protein 18 2 2
MIRT532544 WDR13 WD repeat domain 13 2 2
MIRT533245 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT534659 RNF20 ring finger protein 20 2 2
MIRT534818 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT537492 FAM169A family with sequence similarity 169 member A 2 2
MIRT538778 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539122 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT540964 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541403 CDC27 cell division cycle 27 2 2
MIRT543353 ZNF829 zinc finger protein 829 2 2
MIRT543623 MFAP3 microfibril associated protein 3 2 2
MIRT543649 YY2 YY2 transcription factor 2 2
MIRT544945 SNCB synuclein beta 2 2
MIRT545327 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546094 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548605 DCUN1D3 defective in cullin neddylation 1 domain containing 3 2 2
MIRT548638 DAZAP1 DAZ associated protein 1 2 4
MIRT550318 ZNF681 zinc finger protein 681 2 2
MIRT550412 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 4
MIRT551034 SPPL3 signal peptide peptidase like 3 2 2
MIRT551602 HDGFRP2 HDGF like 2 2 2
MIRT552064 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT552803 YAF2 YY1 associated factor 2 2 2
MIRT553274 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553303 TSPAN3 tetraspanin 3 2 2
MIRT553570 NPM3 nucleophosmin/nucleoplasmin 3 2 2
MIRT554844 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT556069 MTF2 metal response element binding transcription factor 2 2 4
MIRT556898 ITGA2 integrin subunit alpha 2 2 2
MIRT558680 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT559032 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559108 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559864 GSKIP GSK3B interacting protein 2 2
MIRT560868 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT562268 GRB2 growth factor receptor bound protein 2 2 2
MIRT562419 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562652 ARID1A AT-rich interaction domain 1A 2 4
MIRT563771 ZNF678 zinc finger protein 678 2 2
MIRT564279 DEPDC1B DEP domain containing 1B 2 2
MIRT565253 TRA2B transformer 2 beta homolog 2 4
MIRT565307 TMEM64 transmembrane protein 64 2 2
MIRT566034 RFX1 regulatory factor X1 2 2
MIRT566714 MTMR3 myotubularin related protein 3 2 2
MIRT568087 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568417 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT568766 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569516 THYN1 thymocyte nuclear protein 1 2 2
MIRT571823 PHF19 PHD finger protein 19 2 2
MIRT571995 HOXA9 homeobox A9 2 2
MIRT572174 CELF1 CUGBP Elav-like family member 1 2 2
MIRT572637 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT573756 KHSRP KH-type splicing regulatory protein 2 2
MIRT574089 CCDC132 VPS50, EARP/GARPII complex subunit 2 6
MIRT574311 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT574512 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574559 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576686 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608491 NKTR natural killer cell triggering receptor 2 6
MIRT608640 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609231 TMEM189 transmembrane protein 189 2 2
MIRT609561 TCEAL4 transcription elongation factor A like 4 2 2
MIRT610193 FAM49A family with sequence similarity 49 member A 2 2
MIRT610681 SYT2 synaptotagmin 2 2 4
MIRT610725 NAV2 neuron navigator 2 2 2
MIRT610813 SGOL2 shugoshin 2 2 2
MIRT610993 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT611030 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611339 SLC2A4 solute carrier family 2 member 4 2 2
MIRT611511 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT611638 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT611856 RPL3L ribosomal protein L3 like 2 2
MIRT611905 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612047 PCNXL2 pecanex homolog 2 2 6
MIRT612340 TRIB2 tribbles pseudokinase 2 2 2
MIRT612870 INO80C INO80 complex subunit C 2 2
MIRT613555 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614490 MMS22L MMS22 like, DNA repair protein 2 2
MIRT615098 BRD4 bromodomain containing 4 2 2
MIRT616228 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT617220 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT617884 ESR1 estrogen receptor 1 2 2
MIRT618344 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT620264 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT620660 CCDC108 cilia and flagella associated protein 65 2 2
MIRT620761 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621416 TXNL1 thioredoxin like 1 2 2
MIRT621676 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT622231 SLC25A51 solute carrier family 25 member 51 2 2
MIRT622377 SALL1 spalt like transcription factor 1 2 2
MIRT622404 RRAGC Ras related GTP binding C 2 2
MIRT622494 RC3H1 ring finger and CCCH-type domains 1 2 2
MIRT623064 NRXN1 neurexin 1 2 2
MIRT623295 MAX MYC associated factor X 2 2
MIRT623691 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT623930 FMNL3 formin like 3 2 2
MIRT623984 FAM208A family with sequence similarity 208 member A 2 2
MIRT624513 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT624668 ARID4A AT-rich interaction domain 4A 2 2
MIRT624756 ANGPTL2 angiopoietin like 2 2 2
MIRT624949 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT625968 RNF2 ring finger protein 2 2 2
MIRT626415 KIAA2018 upstream transcription factor family member 3 2 2
MIRT626882 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627157 ZNF652 zinc finger protein 652 2 2
MIRT627613 SFT2D2 SFT2 domain containing 2 2 2
MIRT627744 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT627808 PTEN phosphatase and tensin homolog 2 2
MIRT627820 PRR3 proline rich 3 2 2
MIRT630935 UNC93A unc-93 homolog A 2 2
MIRT635930 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638301 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638437 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640281 TCF24 transcription factor 24 2 2
MIRT641979 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 2
MIRT644179 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644439 VDR vitamin D receptor 2 2
MIRT644974 STEAP4 STEAP4 metalloreductase 2 2
MIRT647653 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT648702 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT650120 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT650505 UFM1 ubiquitin fold modifier 1 2 2
MIRT650701 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651083 ZNF518B zinc finger protein 518B 2 4
MIRT653644 SLC30A1 solute carrier family 30 member 1 2 2
MIRT653788 SIX4 SIX homeobox 4 2 2
MIRT656773 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT656949 KIAA1456 KIAA1456 2 2
MIRT656981 KDM5A lysine demethylase 5A 2 2
MIRT657225 TOR1AIP2 torsin 1A interacting protein 2 2 4
MIRT657706 GPC5 glypican 5 2 2
MIRT660107 BTBD3 BTB domain containing 3 2 2
MIRT662817 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT665889 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT668140 GINS2 GINS complex subunit 2 2 2
MIRT668566 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT669718 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT685693 TRIM45 tripartite motif containing 45 2 2
MIRT686579 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT687491 NHLRC2 NHL repeat containing 2 2 2
MIRT687805 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687968 HHIP hedgehog interacting protein 2 2
MIRT689487 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT689595 NUDT7 nudix hydrolase 7 2 2
MIRT690501 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692290 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693060 KIAA1324 KIAA1324 2 2
MIRT697443 ZFHX3 zinc finger homeobox 3 2 2
MIRT698475 TJP1 tight junction protein 1 2 2
MIRT699033 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699785 SEMA4D semaphorin 4D 2 2
MIRT701463 NEO1 neogenin 1 2 2
MIRT701869 MRO maestro 2 2
MIRT702158 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT703750 FAM126B family with sequence similarity 126 member B 2 2
MIRT704277 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707956 PGM3 phosphoglucomutase 3 2 2
MIRT712747 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712848 RHOA ras homolog family member A 2 2
MIRT712954 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713119 U2SURP U2 snRNP associated SURP domain containing 2 2
MIRT713148 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715394 TADA3 transcriptional adaptor 3 2 2
MIRT715475 NEGR1 neuronal growth regulator 1 2 2
MIRT715535 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT721159 MYOCD myocardin 2 2
MIRT722719 ZNF460 zinc finger protein 460 2 2
MIRT723130 GTF2F2 general transcription factor IIF subunit 2 2 2
MIRT723259 TMLHE trimethyllysine hydroxylase, epsilon 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-54 Nicotine approved 89594 Microarray Caenorhabditis elegans 23765240 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-548ac Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-548ac Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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