miRTarBase - #MIRT075318


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pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SF3B3   
Synonyms RSE1, SAP130, SF3b130, STAF130
Description splicing factor 3b subunit 3
Transcript NM_012426   
Expression
Putative miRNA Targets on SF3B3
3'UTR of SF3B3
(miRNA target sites are highlighted)		 
>SF3B3|NM_012426|3'UTR
   1 GCCCTCCTTTCCCGGTGGGGCTTGCCAGAGACTGTGTGTTTTGTTTCCCCCACCACCATCACTGCCACCTGGCTTCTGCC
  81 ATGTGGCAGGAGGGTGACTGGATAATTAAGACTGCATTATGAAAGTCAACAGCTCTTTCCCCTCAGCTCTTCTCCTGGAA
 161 TGACTGGCTTCCCCTCAAATTGGCACTGAGATTTGCTACACTTCTCCCCACCTGGTACATGATACATGACCCCAGGTTCC
 241 AGTGTAGAACCTGAGTCCCCCATTCCCCAAAGCCATCCCTGCATTGATATGTCTTGACTCTCCTGTCTACTTTTGCACAC
 321 ACCCTTAATTTTTAATTGGTTTTCTTGTAAATACAGTTTTGTACAATGTTATCTCTGTGGGAGGAAGGAGGCAGGCTGTG
 401 GTGGGACTGGGTAGGGTATAGTATCACTCCTGAGTTCCACTGCTCTAGAATCTAACCAGAAATAGAAACCTAGTTTTTAA
 481 GGTGACTGGCATCCATGTGTCTTGTTCTGGAGATGAGGATGTAGGTGGGAGGTTTGAACCCAAGTTAGAGCAGGAAGAAC
 561 TGAGTAGACTCCTTCCTTCCAGATACCGACTTGGACTTGCGGCACTCTGTGGCTCCCCACCCCCAGGTCTGTGGTGGTTT
 641 CTTTGTTTTTTCCTGGTTCTTTTTGCTGTGCTGATGAAACATGACCTCAATAACCATGTGTATACCCACCCCTCTTCCCA
 721 CTGGGTATTGAGGAAGGGTGGCTGATTCTTCCTCCTCTTCTACTCTGAGGATGTTAGTATGGGGATTTTAGCATGAATTC
 801 TAGCTGGGGAGTCTTAACAGATGCCCCTTTTACTGATACAGCACCTAAAGCGATCTTTGGCTCCATAGGACCATAGGAAG
 881 GGTCAGTACAGAAGAACCTAGATACTGCCCTGCCCCTGAGAACTGTGTATATGTGGGGCCTGTCTGCAGCACCCATCTCA
 961 GGTGGGTTCCAGAGGGCCTTTAGGGTATAATGAGAGCCTGTTAGGTGGAAGAGGCCCAGTTCCAGAAATGTTCCAGCCCA
1041 CCCCTGAGAATTCCTCCTGTTTAGTTGTGTGGGAAGCCCTCGTCTTCCAGGCTGTCCTTGCGCCTTGAACCTGGAGAAGT
1121 GAGCTCACTGTTCTCAATACTTCACAAATGTAAAACTTTCTTTCGTCTGCATGTGCTCAGCCATCTAAATTGAGCAAATG
1201 ATCTGGTGAGCACTGGGTTAGAATCAGGAATGGTGGAATACAATCTGAACCTCTCAGAGCCCAGAACAGAGGGTTCCTGA
1281 CACTGTGACACTGTCTCCTGGAACTAAGTATCTCTTGAATCATGACTTGGTTTTAGATCAGTCAAGAGAGACCCAGGTTT
1361 TGCCAGGAATCGAATCCCTAAATAACATGTTTTTTTCTCACTTAGCTCATGAATTTGCATAGTAGACAGTAGTTCTGAAT
1441 TAGATTTTGAAAACCTAATTTCAGGGCTCATTTTTTCCTGTGGCCCTAAATCCATTCTATCAAATTGTGTGATACTGACA
1521 TGCAGTCATCTGAGGAACTCAGCGTAGATACTTGAGCAGCTCCTCGCCTCTTTTCTAACTCAAGTTTGACTAAAATACAT
1601 ACACTCCGTACAGAAGGTAGGGGGTTATGTAAGAAAGGAAAACCTAATCTATGGAATCAGGAGTTGTCACCACCGAGCTT
1681 CCTCTGGAAGTCTGCCCATCAGCTTGCTTGTTCTCTGTTAAGAGGAAGGGCTAGGACAAGGATTTGGGCTTGAATATGTG
1761 GAAAGGAATTTTCATAGTTGTTGCTGCAGGACCTACAAAAGTTTAAAATTAGATTGGATGTGACTCAATGACAAGTCCCA
1841 TCTGTGTAATTGTTAAGGGGACCTGATTGACTCCTGTGGTTTGATTGAGCAACCAGGTAAATAGAGACCTCTCTCCAGCT
1921 TTGGCAAAACCCATCAGAGGCTGCTGCAGAACTCAGACAGAGGGATCTGCCCTTGGGTTTGCTTCCATCCTGTTCCATTG
2001 CTAAGCCCTTGTGACTTGGATCCTAGGACTGAAAAGTTTTTAGCTGCCTCAGCTTTCCCCTGACCTTACTGGCAGAGGTT
2081 CTGCAGATGTTTCCTTTGGAAGATCTCTTGCCAAGAATAGCATTCCTTTGGAGGAGGGGGGTTCTAGTTGGAATGTTGCT
2161 TTTCTTGGTTAGTGTAAATGTATTGCTAGTGAGACAGCTGCCGGCGCTGGAAAAGGCTCGTCTCACAGGGAGAGTGCTGG
2241 TCCCCAGAATGTGTGCTGTTCCCACGCTGCTGCCTTTCTTGAGCTTGTTAGAGGAAAGCCAGAAAGGCATTCAGATGGGA
2321 TCAGTCTGGCTTTCAAATTTTTTTTAATTCCTAAGTTCTGTTTTATTTTTTAATTTTTTAAAAAAAATTTTATTAGAGAC
2401 AGTCTCTCTCTCTTGCCTAGCTGGGAGTGCAGTGGAGTGATCATAGCTCACTGAGGCTTGAACTCCTGGGCTCGAGCAAT
2481 CCACCTCAGCCTCCAGAGTAGGGGAGACTACAGATGTGTGCCACCATACTCAGCTAATTTTTAAACTTTTGTAGAGACAG
2561 GGTCTCCCTGTGTTGCCCAGGCTGGCCTCGAACTCCTGACCTCAAAAAATCTTCCTGCCTTGGCCTCCCAAAGCACTGGG
2641 ATTATAGGTGTGAGCCATTGCGCCTGGTCATAAATTCTTGTTTTTTTGTTTGTTTGTTTATTAGAGATGGAATCTCTCTC
2721 TCTTGACCAGGCTAGAGGGCTGTGGTGCGATCTCAGCCCACTGCAACCTCTATCTCCTGAGCTCAAGCGATCCTCCTTAG
2801 CTTCCCAAATAGCTGGAACTACAGGCATGTGCCATCACGTCCAGCTAATTTTTGTATTTTTAGTAGAGAAGGTTTTACCA
2881 TGTTGGACAGGGTGGTCTCGAACTCCTGGCCTAAAGTGGTCCACCTAGCTCAGCCTACCAAAGTGCTGTGATTACAGGCG
2961 TGAGCCACCATGCCCAGCCTCTAAATTCTGTTTTCTATTCAAAGTAAAAATGACATGTGTTTGAGTCATCCACTTGCTCA
3041 TTTGCATATGGAATATTGTATGTGAATATTTTATTACACCCTTAAAATTAATTTTCAAGGGCTATATGTAGAGCTCAGAA
3121 GAAACATCTCTGCTGCTGAAATCAAACCTGGTCCAAAAAACGTCACAACGGAGGAAAGGAATAGATGGCTCTCGAGGACA
3201 AGATAGGGACTCTTAAAACACCTGCTTGGCCATGGTTGATTGACATTTGAGTGATCTGGTAGCCCAACACACCCTGTGAA
3281 GTTCAGGTGAACTGAAATGGGCAGGTGTAGGCTACACACCAGTCTGAACCAGCACAACCAAGAGTTGTTTCTCTTTTTTT
3361 TCTTTTTCTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTTTTGAGATGAAGTCTTACTCTGTTGCCCAGGCTAGAGTAC
3441 AGAGGCACAATCTCGGCTCACCACAGCCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGG
3521 GACTACAGGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTG
3601 GTTTCGAACTCGTGACCTCAGGTGATCCACCCACCTTGGTCTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACTGCACT
3681 TGGCCAGGAGCTGTTTAAGCCATCAGGAGACATGCTGACCCACTAGAAGAGGCTGCTACGCTCATTTCTTCCACAAACGT
3761 TTACTGGGCACCTACCATGAACCACCACCTCCCAGCTCTGTTCTGCACCCAGAGGTTGGAGGAGAGTTTATAACCAGGCA
3841 GTCTCTGTCGCTGTGAGGTTGGTGGTGAGGTGAGTCTGCCAGAGGGCCTGCCACCAGTTTCAGAAGAGCCTGCAGCCTGC
3921 ATCTGATTTCCTCAGCCACAACCTTGGGACTTCAGGAAAAATCAGAAGGTCCCAAGTCTGAAAAATGAAGAGGTGGGGAG
4001 TGGGCAGCAGGGGTTTTAGGTCAGGAAATGGTAGGAAACCTGTAGTTGTGGCTCATAATCCTAGTGGGATATTAGAACCC
4081 TCTTCATTTGTCAGAACAGATTCCTGGGGTCTGCTCCCAATTATTCACACGGTGGTTCATGCCTGGTAATCCCAGCACTT
4161 TGGGCGGCCAGAGGCAGGCAGATTGCTTGAGCCCAGAAGTTTAAGACCAGCCTAGGAAACAGACCCCATCTCTACAAAAA
4241 ATTCAAAAAGCCGGGCGTGAAGCCCTGTTTTTTTTTTTTTAAAAAAAGAGTCTGCTGGTGATGTCTGGGCATGTGTCTGC
4321 TTCACAGTCCAGTGTTATGATCAGTAGCTGTGATGGACAATGAACATTGCTGCTTGTTCAAAATGAAGAAAAAAAATATC
4401 AAAGAAAACCAGGTTTGGAAGTTTCAGATTTGGAAAAGGAGCTGGGCCAGCCCATCTGGAATAGCTGAGGGGCCCTGTTA
4481 GCCCCACCCTACCCCACCCCACCCCCGTATGCAGCATCTCTGGCGGTGCCCAGAGGCAAGCCCCCTTCAGTTTCCCACCT
4561 CTCACTCTGCCTTCCAGAGCCTAGTCAAGTTTTAAATTCCCAGGTCCACTCAGCAGAACTTGCTCCCTTCTCTGACTGCA
4641 GTCTCATAATGAAAGGAGAGGTGCTTTCAGTTGGGTCATTTGGTAGCGTTTAGGCTTAGAAGTTACTAATTTGGAGCCGT
4721 GAGTATATGTGTATAAGCTAGTAACACGTGATGGTCAAGGGAAGTACTACCATTTCCTGTGGGTTATTAGGGCCTCCAGC
4801 TGTTATGAGGACACACTGGGGAATCTCAGCTTTAGGGAGTCGATGATGTAACTGGAGAAAGGCAATGCTGCCCTCATAAA
4881 GCAATCAGAAACGAGATTCCACCTGCCAAATGCCAAGAGGCAGCAAAGTCCATGAAGAGAGCACTGTATACAGTCAGATG
4961 ACCTGGGCTCACTAGCCTCTAAGCATAGTCTTGGTTTCCTGCCTGTAAATTGGTAGAATAAGACTGATTTACTGGGCCTG
5041 GCATGGTGGCTCACACCTGTAATCCCAGCACTTTGAGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAGTTTGAGACC
5121 AGCCTGGGCAACATGACAAAACCCCATCTCTCCAAAAATACAAAAATTAGCCAGGCATGGTGGTGCACACTTGTAGTCCC
5201 AGTAATTAGGGGGCTGAGACAGGAGGATCACTTCAGCCTATGAGTTTGAGGCTGCAGTGAGCTGTGATTGCGCCACTACA
5281 CTCCAGCCTGGATGACAGGACGAAACCTGTCTCAAAAACACCAAAAAACAAAAACCGGTCTCCTGGGGTCATGGTAGCAC
5361 AAACGCACATGACTGAGTGCTCAGGGGTTCTGAGGCTTGTCCGCTGACCTGGGGCTCTGGCCCTGGGAGATCTGGGGGAC
5441 CTGCTGTCCTATATGTGATGCTTTGAAAGAAAGGGGCATCATTCCAAGCCAAGAGGCCCCAGAGAGGGCACCGTGCGGTG
5521 TTCAGGCTTCTGTGAGGCCCCAGTGAGATCCTGTGGCTGTGCCCCCATCACCTCCACCCACTCTGCCCTCCCACTAGCTG
5601 CCCAACGGATGAATCAACGCCTTGGCAGAGTTTTCCAGCAGGGCCTTGCAGAGAGTGTGTGTGACCTGTGTGGCCACTGC
5681 CTTGGGGACGGGTGAGGAGTTAGCCTGGAACATTCCAGCGTGGGCATTATTGTCCTGTTGCAAGTTCAGGGCAAAACCAG
5761 GAATCCAGTTTTGTCGATCCAATTGAGAAAACATTTCATGAACAACTACTTGTGGCATGCATTGGCACTCGGAATAAAGC
5841 GCACTATTGTCACTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' accCGAAAGAUCAGAGUCGAGa 5'
             ||| |:|   |||||||| 
Target 5' acaGCTCTTTCCCCTCAGCTCt 3'
 129 - 150 159.00 -17.50
2 
miRNA  3' acccgAAAGAUC-A--GAGUCGAGa 5'
               |||:||| |  |||||||: 
Target 5' aaaagTTTTTAGCTGCCTCAGCTTt 3'
 2032 - 2056 147.00 -14.60
3 
miRNA  3' accCGAAAGAUCA--GAGUCGAGa 5'
             |:|||:|  |  ||:||||| 
Target 5' catGTTTTTTTCTCACTTAGCTCa 3'
 1386 - 1409 145.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30151481 14 COSMIC
COSN30448639 50 COSMIC
COSN31510780 52 COSMIC
COSN8601943 116 COSMIC
COSN20078647 188 COSMIC
COSN31484987 205 COSMIC
COSN24885114 297 COSMIC
COSN30590994 301 COSMIC
COSN26551792 306 COSMIC
COSN24402847 362 COSMIC
COSN19727446 382 COSMIC
COSN1707334 398 COSMIC
COSN28183679 492 COSMIC
COSN21001732 885 COSMIC
COSN23789652 1225 COSMIC
COSN23822114 1330 COSMIC
COSN5836764 1493 COSMIC
COSN21916276 2797 COSMIC
COSN7269690 3070 COSMIC
COSN29996981 3395 COSMIC
COSN27907445 3462 COSMIC
COSN19437054 3888 COSMIC
COSN16575366 4281 COSMIC
COSN17928635 4282 COSMIC
COSN26078122 4283 COSMIC
COSN27436347 4288 COSMIC
COSN27981232 4551 COSMIC
COSN24431042 4973 COSMIC
COSN28292817 5349 COSMIC
COSN16583278 5620 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs542955617 4 dbSNP
rs1315349961 5 dbSNP
rs1388367699 6 dbSNP
rs748472052 8 dbSNP
rs772351093 12 dbSNP
rs773699781 14 dbSNP
rs374048473 15 dbSNP
rs369756774 28 dbSNP
rs1012899425 31 dbSNP
rs758670795 33 dbSNP
rs1206436372 34 dbSNP
rs759167621 35 dbSNP
rs200910823 43 dbSNP
rs752380128 44 dbSNP
rs758147542 47 dbSNP
rs763811290 48 dbSNP
rs375980084 49 dbSNP
rs1034247085 50 dbSNP
rs1182687031 51 dbSNP
rs757213454 52 dbSNP
rs780254528 53 dbSNP
rs540452840 55 dbSNP
rs1486467656 56 dbSNP
rs564920475 62 dbSNP
rs1186487119 68 dbSNP
rs1273950904 69 dbSNP
rs532279012 83 dbSNP
rs1026446591 84 dbSNP
rs950860324 87 dbSNP
rs1232882281 91 dbSNP
rs748188308 93 dbSNP
rs992751486 100 dbSNP
rs746087514 102 dbSNP
rs543923328 106 dbSNP
rs1410294279 121 dbSNP
rs77441763 136 dbSNP
rs908776351 138 dbSNP
rs1305594417 141 dbSNP
rs1402372323 145 dbSNP
rs1298014275 146 dbSNP
rs1171640101 152 dbSNP
rs961610550 153 dbSNP
rs971671513 155 dbSNP
rs1184308390 164 dbSNP
rs1376227606 169 dbSNP
rs1384773329 172 dbSNP
rs920295706 192 dbSNP
rs1019347811 194 dbSNP
rs930370235 195 dbSNP
rs1162413716 197 dbSNP
rs1444187562 197 dbSNP
rs1257030651 198 dbSNP
rs1200016699 199 dbSNP
rs1448347573 200 dbSNP
rs529607137 205 dbSNP
rs147938761 207 dbSNP
rs769829547 208 dbSNP
rs1289451451 210 dbSNP
rs188771195 211 dbSNP
rs1156938346 216 dbSNP
rs192179927 218 dbSNP
rs1283701994 219 dbSNP
rs773466703 220 dbSNP
rs1470315422 221 dbSNP
rs1212446411 227 dbSNP
rs1371773710 228 dbSNP
rs1235973427 232 dbSNP
rs1482113152 233 dbSNP
rs1393885243 236 dbSNP
rs779234710 240 dbSNP
rs748383840 244 dbSNP
rs1390425184 247 dbSNP
rs1473572921 251 dbSNP
rs1338977675 258 dbSNP
rs1411763905 260 dbSNP
rs1156280915 262 dbSNP
rs1404097474 262 dbSNP
rs1040233286 263 dbSNP
rs1801461 264 dbSNP
rs1157581664 269 dbSNP
rs1414567826 273 dbSNP
rs1452389977 276 dbSNP
rs772422888 284 dbSNP
rs749525048 285 dbSNP
rs975077024 290 dbSNP
rs892352662 291 dbSNP
rs1352834674 297 dbSNP
rs552777946 301 dbSNP
rs1308142211 303 dbSNP
rs1250095268 305 dbSNP
rs376340755 310 dbSNP
rs1464272969 314 dbSNP
rs1279510224 317 dbSNP
rs1368343596 318 dbSNP
rs1266016999 319 dbSNP
rs771393477 323 dbSNP
rs773505004 329 dbSNP
rs968565372 330 dbSNP
rs1276690234 335 dbSNP
rs878875108 336 dbSNP
rs1043741577 343 dbSNP
rs1366801066 349 dbSNP
rs978644375 352 dbSNP
rs903881457 354 dbSNP
rs1002688598 355 dbSNP
rs747546347 360 dbSNP
rs1316697499 362 dbSNP
rs1275140177 366 dbSNP
rs924563387 376 dbSNP
rs771381978 378 dbSNP
rs1033742488 379 dbSNP
rs1163227851 388 dbSNP
rs896582998 391 dbSNP
rs1442829943 392 dbSNP
rs1013716508 398 dbSNP
rs570955867 399 dbSNP
rs1245914419 402 dbSNP
rs1463056365 406 dbSNP
rs1223538598 407 dbSNP
rs961599193 409 dbSNP
rs1242669455 411 dbSNP
rs757917690 417 dbSNP
rs1138424 440 dbSNP
rs1289036612 441 dbSNP
rs369436429 448 dbSNP
rs974335918 449 dbSNP
rs1442982798 451 dbSNP
rs1208052147 453 dbSNP
rs1179208352 456 dbSNP
rs1027263052 470 dbSNP
rs1057381147 485 dbSNP
rs1409021325 486 dbSNP
rs951717523 492 dbSNP
rs986218098 494 dbSNP
rs774820694 505 dbSNP
rs1362609933 506 dbSNP
rs1158119451 508 dbSNP
rs183854761 517 dbSNP
rs556344152 519 dbSNP
rs1439011844 520 dbSNP
rs1332084682 526 dbSNP
rs1470952745 530 dbSNP
rs1323458294 550 dbSNP
rs1336795259 555 dbSNP
rs1423301155 560 dbSNP
rs1372426931 564 dbSNP
rs1393718383 565 dbSNP
rs1169332673 566 dbSNP
rs1404774813 571 dbSNP
rs1417598838 581 dbSNP
rs1193193254 582 dbSNP
rs1445216198 588 dbSNP
rs370810492 600 dbSNP
rs944460715 601 dbSNP
rs975903794 602 dbSNP
rs913773639 623 dbSNP
rs576073492 627 dbSNP
rs945259597 628 dbSNP
rs1043694836 632 dbSNP
rs1280265461 641 dbSNP
rs1219502919 646 dbSNP
rs1368739366 663 dbSNP
rs1274648664 664 dbSNP
rs903783943 667 dbSNP
rs899168321 682 dbSNP
rs149004175 686 dbSNP
rs938005111 687 dbSNP
rs760004818 693 dbSNP
rs1460001944 697 dbSNP
rs994879174 698 dbSNP
rs1415261036 703 dbSNP
rs187048849 706 dbSNP
rs1174021999 707 dbSNP
rs1233608990 708 dbSNP
rs1480432165 712 dbSNP
rs896536246 713 dbSNP
rs1048001546 719 dbSNP
rs1176404325 737 dbSNP
rs1320952499 739 dbSNP
rs1210315182 741 dbSNP
rs1311276339 747 dbSNP
rs1278317431 751 dbSNP
rs1013657993 754 dbSNP
rs1222035234 759 dbSNP
rs1015712682 765 dbSNP
rs191104856 768 dbSNP
rs1009048618 772 dbSNP
rs995644465 781 dbSNP
rs1228394865 785 dbSNP
rs1371193878 789 dbSNP
rs1304673694 794 dbSNP
rs1177023673 800 dbSNP
rs7190039 802 dbSNP
rs1335016444 809 dbSNP
rs1458594163 810 dbSNP
rs1412507587 811 dbSNP
rs1158326445 819 dbSNP
rs1417240633 826 dbSNP
rs775865383 837 dbSNP
rs4284632 840 dbSNP
rs1210271686 843 dbSNP
rs143842203 847 dbSNP
rs1354752595 852 dbSNP
rs1017721183 853 dbSNP
rs1441104225 857 dbSNP
rs965818426 859 dbSNP
rs1306539127 860 dbSNP
rs1314890440 865 dbSNP
rs1228930784 866 dbSNP
rs28579531 877 dbSNP
rs750058790 884 dbSNP
rs758005070 890 dbSNP
rs1378594190 894 dbSNP
rs184670120 899 dbSNP
rs562215547 902 dbSNP
rs1389015906 908 dbSNP
rs979279121 913 dbSNP
rs1319672511 914 dbSNP
rs924510929 915 dbSNP
rs1351520337 916 dbSNP
rs1165461781 917 dbSNP
rs925187046 928 dbSNP
rs1382925164 930 dbSNP
rs1190033578 932 dbSNP
rs558743998 933 dbSNP
rs937933665 938 dbSNP
rs992649108 940 dbSNP
rs1485120333 942 dbSNP
rs751297617 943 dbSNP
rs917080167 944 dbSNP
rs1358810029 945 dbSNP
rs1216335986 949 dbSNP
rs917951769 961 dbSNP
rs1366242764 963 dbSNP
rs1297197188 965 dbSNP
rs1380294572 974 dbSNP
rs754768817 997 dbSNP
rs1037047765 1004 dbSNP
rs1202745709 1006 dbSNP
rs1457349924 1008 dbSNP
rs1363104100 1011 dbSNP
rs148180575 1016 dbSNP
rs1271364164 1018 dbSNP
rs897262359 1023 dbSNP
rs920712558 1024 dbSNP
rs529720206 1029 dbSNP
rs781181922 1032 dbSNP
rs1190640185 1037 dbSNP
rs995593554 1038 dbSNP
rs1477040802 1045 dbSNP
rs748091161 1055 dbSNP
rs1169133796 1058 dbSNP
rs1490332649 1059 dbSNP
rs1266817478 1063 dbSNP
rs1419677618 1077 dbSNP
rs1408976760 1080 dbSNP
rs1047784066 1083 dbSNP
rs1250960496 1085 dbSNP
rs1367071640 1087 dbSNP
rs1313667719 1089 dbSNP
rs1049045973 1092 dbSNP
rs890034583 1094 dbSNP
rs1404208671 1095 dbSNP
rs1343597049 1100 dbSNP
rs1309818440 1103 dbSNP
rs1007591942 1106 dbSNP
rs1369462510 1111 dbSNP
rs868289111 1113 dbSNP
rs1433568312 1118 dbSNP
rs541459533 1120 dbSNP
rs1379672218 1121 dbSNP
rs1040505241 1131 dbSNP
rs1017250623 1134 dbSNP
rs1267357289 1136 dbSNP
rs756193773 1138 dbSNP
rs997199306 1142 dbSNP
rs1194240609 1154 dbSNP
rs1484373450 1155 dbSNP
rs1020695797 1160 dbSNP
rs1222638689 1164 dbSNP
rs748804650 1166 dbSNP
rs904302390 1172 dbSNP
rs1360445514 1174 dbSNP
rs999791280 1179 dbSNP
rs1031313698 1183 dbSNP
rs777757094 1187 dbSNP
rs1397365047 1195 dbSNP
rs955950906 1198 dbSNP
rs1290842498 1211 dbSNP
rs749420204 1216 dbSNP
rs1469603470 1233 dbSNP
rs979226507 1237 dbSNP
rs559708218 1244 dbSNP
rs993158430 1245 dbSNP
rs1024266836 1246 dbSNP
rs925142202 1248 dbSNP
rs1195294262 1259 dbSNP
rs979989374 1260 dbSNP
rs1474764453 1263 dbSNP
rs1257095692 1267 dbSNP
rs1186134632 1268 dbSNP
rs1203337970 1277 dbSNP
rs920660239 1278 dbSNP
rs959317019 1287 dbSNP
rs1424978077 1289 dbSNP
rs983416881 1292 dbSNP
rs1349894655 1298 dbSNP
rs907878416 1300 dbSNP
rs1246329224 1305 dbSNP
rs991169631 1309 dbSNP
rs917853071 1327 dbSNP
rs1340618322 1338 dbSNP
rs944762992 1346 dbSNP
rs949363354 1352 dbSNP
rs1036995588 1355 dbSNP
rs1322994289 1356 dbSNP
rs1401756396 1364 dbSNP
rs1384835261 1368 dbSNP
rs918636588 1372 dbSNP
rs932122040 1390 dbSNP
rs1473809270 1398 dbSNP
rs771232118 1401 dbSNP
rs1369195025 1402 dbSNP
rs140101137 1406 dbSNP
rs1043888406 1413 dbSNP
rs1249609231 1414 dbSNP
rs1189009950 1419 dbSNP
rs904254835 1424 dbSNP
rs931429334 1428 dbSNP
rs1211639743 1430 dbSNP
rs1048550847 1436 dbSNP
rs889973467 1455 dbSNP
rs1031261040 1462 dbSNP
rs1402839725 1463 dbSNP
rs547839299 1464 dbSNP
rs1041666819 1466 dbSNP
rs1431901257 1478 dbSNP
rs552549770 1484 dbSNP
rs1316839953 1489 dbSNP
rs1432906074 1500 dbSNP
rs774730966 1506 dbSNP
rs1366204797 1508 dbSNP
rs1163027908 1513 dbSNP
rs1422929271 1517 dbSNP
rs1013957083 1522 dbSNP
rs1024630496 1522 dbSNP
rs901444628 1542 dbSNP
rs150314468 1544 dbSNP
rs1240150840 1545 dbSNP
rs1200846211 1548 dbSNP
rs560090175 1549 dbSNP
rs1322044486 1560 dbSNP
rs1027496587 1563 dbSNP
rs531779442 1566 dbSNP
rs1001062593 1571 dbSNP
rs1274892188 1580 dbSNP
rs1213693985 1588 dbSNP
rs1032158342 1589 dbSNP
rs1339066854 1592 dbSNP
rs983531527 1598 dbSNP
rs1439157665 1600 dbSNP
rs550322069 1604 dbSNP
rs1346726574 1607 dbSNP
rs959497261 1608 dbSNP
rs568600227 1609 dbSNP
rs917786622 1612 dbSNP
rs944689830 1618 dbSNP
rs970627234 1623 dbSNP
rs1249442777 1624 dbSNP
rs972699874 1639 dbSNP
rs918623642 1642 dbSNP
rs1417071546 1650 dbSNP
rs1174141599 1655 dbSNP
rs535941186 1660 dbSNP
rs1197257462 1664 dbSNP
rs931378348 1674 dbSNP
rs190351083 1675 dbSNP
rs752482167 1676 dbSNP
rs761124797 1679 dbSNP
rs942840422 1685 dbSNP
rs1271272041 1698 dbSNP
rs1244507537 1702 dbSNP
rs1324777339 1716 dbSNP
rs137947465 1718 dbSNP
rs1352352875 1720 dbSNP
rs1182640823 1726 dbSNP
rs534101750 1730 dbSNP
rs904034867 1731 dbSNP
rs1352953493 1732 dbSNP
rs865927919 1738 dbSNP
rs558537123 1741 dbSNP
rs935542885 1742 dbSNP
rs1470115675 1748 dbSNP
rs1366376871 1752 dbSNP
rs1174092099 1754 dbSNP
rs946315665 1755 dbSNP
rs1052797476 1759 dbSNP
rs1042073221 1764 dbSNP
rs182547643 1767 dbSNP
rs1238821184 1773 dbSNP
rs1203982831 1774 dbSNP
rs1338760939 1775 dbSNP
rs549336251 1775 dbSNP
rs1262926180 1785 dbSNP
rs1202278350 1786 dbSNP
rs1406978525 1788 dbSNP
rs772548100 1793 dbSNP
rs1032482785 1794 dbSNP
rs1371357181 1812 dbSNP
rs1286170092 1813 dbSNP
rs1332376375 1814 dbSNP
rs1453658421 1816 dbSNP
rs537673007 1818 dbSNP
rs79390285 1829 dbSNP
rs574234497 1834 dbSNP
rs1345681758 1838 dbSNP
rs765945968 1848 dbSNP
rs1398437811 1849 dbSNP
rs1415340952 1873 dbSNP
rs751277114 1874 dbSNP
rs1443655380 1879 dbSNP
rs1027612467 1881 dbSNP
rs1182104748 1884 dbSNP
rs951850678 1895 dbSNP
rs541522796 1896 dbSNP
rs1015404117 1906 dbSNP
rs1328375357 1909 dbSNP
rs867710893 1912 dbSNP
rs1292130603 1919 dbSNP
rs1246919605 1948 dbSNP
rs1382343581 1951 dbSNP
rs559722277 1953 dbSNP
rs1226547337 1959 dbSNP
rs1264425388 1960 dbSNP
rs1436978587 1965 dbSNP
rs966171250 1973 dbSNP
rs1288211384 1976 dbSNP
rs1024797815 1977 dbSNP
rs1428570028 1978 dbSNP
rs976457459 1981 dbSNP
rs369030005 1987 dbSNP
rs370829902 1988 dbSNP
rs1253559956 2006 dbSNP
rs979652909 2009 dbSNP
rs972645736 2018 dbSNP
rs1382984849 2023 dbSNP
rs1025585558 2026 dbSNP
rs1170157563 2028 dbSNP
rs952791426 2037 dbSNP
rs1262868523 2061 dbSNP
rs185091418 2061 dbSNP
rs35520053 2063 dbSNP
rs935490411 2063 dbSNP
rs1186383358 2066 dbSNP
rs1485189220 2069 dbSNP
rs984158835 2071 dbSNP
rs1439264261 2075 dbSNP
rs1182969468 2079 dbSNP
rs1358877991 2084 dbSNP
rs1289845059 2095 dbSNP
rs911259099 2099 dbSNP
rs1229973378 2100 dbSNP
rs1307804146 2108 dbSNP
rs942809995 2111 dbSNP
rs564598388 2113 dbSNP
rs977320078 2115 dbSNP
rs922805790 2119 dbSNP
rs532013622 2121 dbSNP
rs188969521 2126 dbSNP
rs1369604111 2127 dbSNP
rs1403789765 2128 dbSNP
rs1309400002 2136 dbSNP
rs1363248795 2136 dbSNP
rs1462189250 2137 dbSNP
rs1373942634 2138 dbSNP
rs562260634 2142 dbSNP
rs1427146328 2145 dbSNP
rs1179163760 2148 dbSNP
rs540066387 2149 dbSNP
rs1432054131 2154 dbSNP
rs181620525 2156 dbSNP
rs949843621 2168 dbSNP
rs199527558 2172 dbSNP
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rs144769281 2192 dbSNP
rs1045771333 2193 dbSNP
rs59639975 2203 dbSNP
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rs1024743462 2207 dbSNP
rs1222833243 2209 dbSNP
rs1343026890 2210 dbSNP
rs1048994293 2214 dbSNP
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rs777792226 2218 dbSNP
rs1395277055 2220 dbSNP
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rs887715452 2225 dbSNP
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rs36066149 2228 dbSNP
rs867215569 2229 dbSNP
rs1324190626 2230 dbSNP
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rs138721969 2253 dbSNP
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rs779273766 2359 dbSNP
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rs888355758 2500 dbSNP
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rs777198564 2526 dbSNP
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rs1285076309 2701 dbSNP
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rs1237848558 2998 dbSNP
rs1286943148 3006 dbSNP
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rs922939115 3034 dbSNP
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rs955965500 3651 dbSNP
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rs182899563 4020 dbSNP
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rs1051989606 4389 dbSNP
rs1188111378 4389 dbSNP
rs898534642 4389 dbSNP
rs1336861286 4397 dbSNP
rs1388564360 4398 dbSNP
rs754968035 4398 dbSNP
rs890730798 4398 dbSNP
rs557097086 4400 dbSNP
rs1389678824 4401 dbSNP
rs943648583 4401 dbSNP
rs1381449044 4405 dbSNP
rs1052797153 4410 dbSNP
rs1166737173 4420 dbSNP
rs891533009 4426 dbSNP
rs1373925595 4429 dbSNP
rs575342269 4430 dbSNP
rs1457386869 4433 dbSNP
rs1026181116 4440 dbSNP
rs955386812 4441 dbSNP
rs547217526 4448 dbSNP
rs1291255459 4451 dbSNP
rs1043267434 4458 dbSNP
rs986784949 4469 dbSNP
rs1186657679 4473 dbSNP
rs1435220265 4482 dbSNP
rs1484475021 4483 dbSNP
rs1264961515 4484 dbSNP
rs1319406100 4487 dbSNP
rs1351855557 4488 dbSNP
rs1362592310 4488 dbSNP
rs1260590986 4490 dbSNP
rs1491521090 4490 dbSNP
rs1398154681 4491 dbSNP
rs1491398317 4491 dbSNP
rs1313961488 4492 dbSNP
rs1018456016 4494 dbSNP
rs998125286 4497 dbSNP
rs1300283249 4501 dbSNP
rs1025584202 4502 dbSNP
rs542662194 4506 dbSNP
rs1208190381 4507 dbSNP
rs7198317 4508 dbSNP
rs1484391736 4509 dbSNP
rs1183354310 4517 dbSNP
rs990245495 4521 dbSNP
rs1256639600 4525 dbSNP
rs1447892781 4526 dbSNP
rs914751336 4537 dbSNP
rs536481848 4540 dbSNP
rs946249599 4542 dbSNP
rs905674121 4545 dbSNP
rs977861104 4546 dbSNP
rs1280280430 4549 dbSNP
rs1315938412 4559 dbSNP
rs2168607 4559 dbSNP
rs540997265 4565 dbSNP
rs939013396 4565 dbSNP
rs1395125375 4574 dbSNP
rs1325149353 4577 dbSNP
rs1035530204 4590 dbSNP
rs1056154088 4601 dbSNP
rs1425181537 4602 dbSNP
rs1157864443 4607 dbSNP
rs1168096723 4610 dbSNP
rs959954723 4613 dbSNP
rs144679445 4620 dbSNP
rs756566908 4624 dbSNP
rs182525066 4625 dbSNP
rs1467305163 4627 dbSNP
rs1038334175 4628 dbSNP
rs1467158461 4629 dbSNP
rs115804743 4631 dbSNP
rs1196506338 4633 dbSNP
rs1338970599 4647 dbSNP
rs1268712133 4649 dbSNP
rs973543173 4654 dbSNP
rs1371482441 4658 dbSNP
rs187991252 4659 dbSNP
rs1438665062 4662 dbSNP
rs1402424071 4665 dbSNP
rs192415092 4667 dbSNP
rs549089036 4668 dbSNP
rs1008155957 4671 dbSNP
rs1393786475 4673 dbSNP
rs987640315 4675 dbSNP
rs1018239658 4677 dbSNP
rs567304305 4678 dbSNP
rs376036120 4680 dbSNP
rs1453092401 4688 dbSNP
rs1240638434 4689 dbSNP
rs534588534 4690 dbSNP
rs1182615951 4692 dbSNP
rs1022329703 4701 dbSNP
rs1271078034 4703 dbSNP
rs935605880 4706 dbSNP
rs1202425800 4713 dbSNP
rs1053197879 4714 dbSNP
rs912922376 4719 dbSNP
rs1279307282 4723 dbSNP
rs947053684 4728 dbSNP
rs923691702 4734 dbSNP
rs1280066843 4737 dbSNP
rs939089520 4738 dbSNP
rs762325849 4746 dbSNP
rs546248377 4747 dbSNP
rs1434916369 4748 dbSNP
rs1374524414 4749 dbSNP
rs148235997 4750 dbSNP
rs1173387656 4754 dbSNP
rs34779986 4759 dbSNP
rs571921472 4760 dbSNP
rs556354638 4761 dbSNP
rs1159667919 4765 dbSNP
rs1469647150 4766 dbSNP
rs569885682 4769 dbSNP
rs1004825109 4770 dbSNP
rs1405217406 4773 dbSNP
rs898428228 4785 dbSNP
rs557132203 4787 dbSNP
rs1015325749 4789 dbSNP
rs1358221904 4794 dbSNP
rs1433242236 4804 dbSNP
rs1285426186 4805 dbSNP
rs1008270584 4807 dbSNP
rs1354426297 4813 dbSNP
rs963384244 4817 dbSNP
rs1310702944 4818 dbSNP
rs1039804926 4823 dbSNP
rs1371685673 4824 dbSNP
rs899838658 4828 dbSNP
rs995265667 4834 dbSNP
rs1409788635 4838 dbSNP
rs1406490678 4841 dbSNP
rs1021860361 4842 dbSNP
rs1029043013 4842 dbSNP
rs111335679 4843 dbSNP
rs565097442 4853 dbSNP
rs575426768 4853 dbSNP
rs1242454148 4859 dbSNP
rs768541586 4861 dbSNP
rs957160642 4869 dbSNP
rs960234195 4872 dbSNP
rs1233296647 4877 dbSNP
rs551973489 4893 dbSNP
rs185558304 4894 dbSNP
rs1220124195 4899 dbSNP
rs969023114 4913 dbSNP
rs1289798101 4915 dbSNP
rs1430539540 4916 dbSNP
rs538947885 4924 dbSNP
rs978839420 4931 dbSNP
rs1461983410 4932 dbSNP
rs573229724 4933 dbSNP
rs1162922741 4934 dbSNP
rs927037509 4941 dbSNP
rs540639834 4944 dbSNP
rs1424011566 4945 dbSNP
rs1185708559 4946 dbSNP
rs1402761542 4948 dbSNP
rs1452237859 4949 dbSNP
rs1254753090 4954 dbSNP
rs1214269762 4956 dbSNP
rs761712140 4958 dbSNP
rs1206074067 4959 dbSNP
rs1307705914 4964 dbSNP
rs765198584 4967 dbSNP
rs1046856462 4969 dbSNP
rs565093883 4972 dbSNP
rs773349128 4976 dbSNP
rs1306215673 4980 dbSNP
rs1442237470 4980 dbSNP
rs1394457363 4983 dbSNP
rs369124211 4984 dbSNP
rs1463651274 4993 dbSNP
rs1327366637 5002 dbSNP
rs762923790 5030 dbSNP
rs1170025544 5031 dbSNP
rs899951106 5044 dbSNP
rs1396695924 5046 dbSNP
rs1194071001 5050 dbSNP
rs1453706677 5052 dbSNP
rs1251130620 5081 dbSNP
rs189470890 5083 dbSNP
rs899080738 5089 dbSNP
rs1480677794 5090 dbSNP
rs1043465065 5098 dbSNP
rs1293077641 5099 dbSNP
rs903394791 5102 dbSNP
rs999510399 5107 dbSNP
rs1282881943 5112 dbSNP
rs1235547768 5119 dbSNP
rs1035980084 5122 dbSNP
rs1370903048 5130 dbSNP
rs1299822825 5134 dbSNP
rs1393152756 5136 dbSNP
rs1369025994 5145 dbSNP
rs1374179650 5148 dbSNP
rs1297783087 5154 dbSNP
rs1440253380 5156 dbSNP
rs994815470 5162 dbSNP
rs960182022 5173 dbSNP
rs1433941572 5175 dbSNP
rs752539024 5178 dbSNP
rs1023363921 5181 dbSNP
rs1029034655 5183 dbSNP
rs1249169574 5189 dbSNP
rs766526452 5192 dbSNP
rs1009010412 5199 dbSNP
rs969137806 5200 dbSNP
rs1486440424 5202 dbSNP
rs1257872075 5206 dbSNP
rs35975830 5206 dbSNP
rs973729488 5211 dbSNP
rs1347625432 5213 dbSNP
rs1019112251 5215 dbSNP
rs1254723038 5217 dbSNP
rs1241849436 5233 dbSNP
rs919589945 5245 dbSNP
rs956870181 5251 dbSNP
rs192137363 5254 dbSNP
rs1022508987 5268 dbSNP
rs755184566 5269 dbSNP
rs978395373 5272 dbSNP
rs926984798 5273 dbSNP
rs1454225426 5279 dbSNP
rs937078209 5287 dbSNP
rs1156306668 5296 dbSNP
rs1475904975 5298 dbSNP
rs1418051892 5302 dbSNP
rs1485527620 5303 dbSNP
rs1254472793 5307 dbSNP
rs767751872 5331 dbSNP
rs753005396 5337 dbSNP
rs1039531163 5338 dbSNP
rs917005060 5339 dbSNP
rs1390414203 5342 dbSNP
rs756478879 5346 dbSNP
rs16970320 5351 dbSNP
rs1382637167 5352 dbSNP
rs1384071237 5358 dbSNP
rs1318474140 5363 dbSNP
rs899074598 5365 dbSNP
rs1394623036 5366 dbSNP
rs1163636097 5370 dbSNP
rs930597595 5374 dbSNP
rs1050401101 5388 dbSNP
rs1374496959 5392 dbSNP
rs530709011 5403 dbSNP
rs1416577475 5404 dbSNP
rs889152350 5413 dbSNP
rs1008918862 5418 dbSNP
rs549125873 5421 dbSNP
rs1207418950 5424 dbSNP
rs1470249972 5426 dbSNP
rs1273864007 5432 dbSNP
rs1018999065 5439 dbSNP
rs13338255 5442 dbSNP
rs1164136598 5447 dbSNP
rs896086356 5459 dbSNP
rs1013059080 5473 dbSNP
rs1295259568 5474 dbSNP
rs757826122 5476 dbSNP
rs1371705345 5478 dbSNP
rs1324618859 5490 dbSNP
rs528139285 5492 dbSNP
rs1321400992 5497 dbSNP
rs1398109008 5501 dbSNP
rs1023145163 5507 dbSNP
rs968310077 5513 dbSNP
rs8062178 5517 dbSNP
rs1033905478 5518 dbSNP
rs1026770955 5528 dbSNP
rs951108718 5529 dbSNP
rs1275317065 5541 dbSNP
rs1196633574 5546 dbSNP
rs571108180 5547 dbSNP
rs958342018 5562 dbSNP
rs1236294710 5567 dbSNP
rs982492264 5568 dbSNP
rs992457428 5578 dbSNP
rs1210058624 5579 dbSNP
rs916971604 5581 dbSNP
rs746533988 5587 dbSNP
rs1433607205 5589 dbSNP
rs965279593 5599 dbSNP
rs1329075166 5601 dbSNP
rs1390436554 5602 dbSNP
rs1248259282 5604 dbSNP
rs962136714 5607 dbSNP
rs1191461169 5608 dbSNP
rs971922329 5609 dbSNP
rs1396151064 5613 dbSNP
rs975183329 5619 dbSNP
rs920450258 5620 dbSNP
rs768363931 5628 dbSNP
rs1477058561 5633 dbSNP
rs1234640684 5639 dbSNP
rs532884520 5644 dbSNP
rs1437449460 5650 dbSNP
rs1249974815 5663 dbSNP
rs1212675770 5669 dbSNP
rs550849481 5678 dbSNP
rs1279467116 5680 dbSNP
rs1416354079 5681 dbSNP
rs569139017 5682 dbSNP
rs1050307200 5683 dbSNP
rs1279616090 5686 dbSNP
rs536471400 5690 dbSNP
rs1348166027 5691 dbSNP
rs184680216 5697 dbSNP
rs1314344604 5698 dbSNP
rs1416954852 5701 dbSNP
rs776425014 5709 dbSNP
rs924740767 5716 dbSNP
rs566967055 5717 dbSNP
rs892546832 5719 dbSNP
rs533991396 5720 dbSNP
rs188604833 5721 dbSNP
rs1409960794 5725 dbSNP
rs1388153201 5727 dbSNP
rs1485855758 5746 dbSNP
rs903989891 5767 dbSNP
rs1207823097 5768 dbSNP
rs141268495 5776 dbSNP
rs1336434375 5777 dbSNP
rs1284872665 5779 dbSNP
rs1033854676 5783 dbSNP
rs1341988434 5784 dbSNP
rs1294701135 5786 dbSNP
rs1233490791 5789 dbSNP
rs1448493378 5798 dbSNP
rs960953509 5799 dbSNP
rs769765326 5811 dbSNP
rs766761978 5816 dbSNP
rs1283959858 5820 dbSNP
rs1013867382 5826 dbSNP
rs1292525589 5831 dbSNP
rs1024430932 5841 dbSNP
rs961804604 5842 dbSNP
rs150369606 5844 dbSNP
rs920372970 5845 dbSNP
rs1167243516 5846 dbSNP
rs16970331 5847 dbSNP
rs1413423392 5850 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 23450.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acccgaaagaucagaGUCGAGa 5'
                         |||||| 
Target 5' -------aaagucaaCAGCUCu 3'
 		1 - 15
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 23450.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acccgaaagaucagaGUCGAGa 5'
                         |||||| 
Target 5' -----------ucaaCAGCUCu 3'
 		1 - 11
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_012426 | 3UTR | UCAACAGCUCUUUCCCCUCAGCUCUUCUCCUGGAAUGACUGGCUUCCCCUCAAAUUGGCACUGAGAUUUGCUACACUUCUCCCCACCUGGUACAUGAUACAUGACCCCAGGUUCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_012426 | 3UTR | UUCCCCUCAGCUCUUCUCCUGGAAUGACUGGCUUCCCCUCAAAUUGGCACUGAGAUUUGCUACACUUCUCCCCACCUGGUACAUGAUACAUGACCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_012426 | 3UTR | UUUCCCCUCAGCUCUUCUCCUGGAAUGACUGGCUUCCCCUCAAAUUGGCACUGAGAUUUGCUACACUUCUCCCCACCUGGUACAUGAUACAUGACCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_012426 | 3UTR | CAGCUCUUCUCCUGGAAUGACUGGCUUCCCCUCAAAUUGGCACUGAGAUUUGCUACACUUCUCCCCACCUGGUACAUGAUACAUGACCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_012426 | 3UTR | AAGUCAACAGCUCUUUCCCCUCAGCUCUUCUCCUGGAAUGACUGGCUUCCCCUCAAAUUGGCACUGAGAUUUGCUACACUUCUCCCCACCUGGUACAUGAUACAUGACCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_012426 | 3UTR | UUCCCCUCAGCUCUUCUCCUGGAAUGACUGGCUUCCCCUCAAAUUGGCACUGAGAUUUGCUACACUUCUCCCCACCUGGUACAUGAUACAUGACCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000302516.5 | 3UTR | AAAGUCAACAGCUCUUUCCCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000302516.5 | 3UTR | UCAACAGCUCUUUCCCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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