miRTarBase - #MIRT075787


—
pre-miRNA Information
pre-miRNA hsa-mir-520e   
Genomic Coordinates chr19: 53675711 - 53675797
Description Homo sapiens miR-520e stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-520e
Sequence 54| AAAGUGCUUCCUUUUUGAGGG |74
Evidence Experimental
Experiments Array-cloned
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol KIAA0513   
Synonyms -
Description KIAA0513
Transcript NM_014732   
Expression
Putative miRNA Targets on KIAA0513
3'UTR of KIAA0513
(miRNA target sites are highlighted)		 
>KIAA0513|NM_014732|3'UTR
   1 GCCCCAGAGGTCGCACTCCGCAGGAGGACTGAGGCCATGTGCCATTCTCCCGGGCCCAGCGCCCGGCCGTCACCCCACCC
  81 GATGACCTGCATGAAGCCAGCAGCACCCAGAGCCACTCCTGCTGCCCTAGAACTAGCGGTTAGAAGAATCCGCTGTTCCT
 161 CCCTCATCTCCTCTGCCTGTGTCTGCGACCCCCATCCATGTGCCAAAGTGTCCCTTGGGTCACACAGCTAAAGCCGAGGT
 241 GACCAGTTGTACCCCGAGTGCCAGGCTTGTGAGATGAGACCAAGAGGGAGGAGGGGAAGGACTCCATGGGCCATCGTGGG
 321 CCAAGGGCTGGCGAGGGTGGGGGCGGGCAAGGGATGCAGGCAGGACAGCCATGAGGTGGGGCTGCAGCCGGCACACCCAG
 401 TGGTGGAGGGCCGGCGCTGCCACTCACGGTGGGTGGCCGTGGGCCACCTTCCCTGCAATGGGTGCACACGCGGCTCCCAT
 481 CCAGCCCTCTCAGCGTGGGGCTGTGGCTGGTCCTCACTATTCCCCAGTCTCCCGCTGTGGGGCAGGAACAGGAAGTGACG
 561 GGAACCTTGAGGAGGAAACGCCTGTGTTAGGGAGAGAGTGGGTGCGGTGTAGAGGATGCTCTTGGCCGGCTGGAGCAAGA
 641 CCTGGCTCCCACCAGAGGGACGTGTGTGTGCCTGCAGACGGCCCGGGAGCTGTGTGTCTCCGCCAGAGTCACAGCAGTGC
 721 CGAGGTGTCCGCGGCAGACCACACAGACCGTCTGAAATGCGCCCGCCTGGCGGACAGCTCCCTTCTGAAGCAGAGAAGCC
 801 TCCATGGTCACGAAGCAGCGTTGTGCTGTGTGTCCCTCGCAAGAAGCACAGGAAAGAGAAGTTTCTTTAGTAGCCACTAG
 881 ACAACCACCCTTTCTGAAAGCAAACAGTGCTGCTCTTTATTCCAGACAAGGCAGGAAAGTCTGAGTTGGGAGTGACAGTG
 961 GCTGGAGAGAAGCAGATCTGTGCAACGTGCAGGGCAAGCCAGTGGCGTGGCCTCTGCCTCTAAGCGCTGAGCATTGGGCC
1041 CCTTCCCCACCAGACCTTTGTAGCTCCTCCAGCCTCTGCAGAGACTCCCTTCACCTCGCACTTACTGCCTGGGAACCACG
1121 GCCCTTCTCTTCTGTGGGTCTGTACCAGGTACTCCAGGCCAGCCCATGGGCCCGGGGCCTGACCCCAACACCTGCATGCT
1201 GGGTCCAGAGCCTTCTGTTTCACCGTGCGTGGACACTGCTAGGCCGCCTGGGGTCCCCTGCCTCCTGCCTGTCGCTGCCG
1281 TGGTCCCTGACTGCGAAATAGGCCCGCGGGGCTCTCCCTCCTCCTGCCATCCTCCCCTCCCGCCCTTCCTGGCTACCTCC
1361 TCTGACATGCGGTCAGATAAGTCCCGTCTTGTTTGTGAGTACCACAGAAACGCCTGAGAGTCACTTACCCGGCCACTGCT
1441 TGGAAGGTTTCCCTCCGGGGAATGCCTCCCTGGAATGTTCCAGAGACGGAACATTCTCTAGAGACAACAGTCTGTGCTGC
1521 AGATTGGTTGGATCACAGAATGTGTGTCTGGGGCATTATCTGAAACGTGGTGTCATCTGATGCATTTGGACCATATGCTG
1601 CCAGACTGCAGAACGGGGGAGCCGGGGCTCAGGGCCCCTGACTGCATGGTGCATGAGTGATCTCAGCCTAGCGATGCCGC
1681 TGGCCAGACCGTGACCATGCTGCCAGTGTGCTCGCCATGAGCTGGGTCAGGGCTGGGGAGTTGTGCAGGCTGGGGTGACC
1761 CTTCCCCCATCATTGGGCCCCAACGGGCATGTCTCCACCGAATCCATTTAGAGAAATGTCAGAGCGAGGGTTGTGTGGAC
1841 ACCCCTCGCTCTGATGCCAACTGCAGATAATACACACCTCCTGCAGCGTCCAGCCACGGCTCCAGGGCACTGCTCTCCTC
1921 CTTGCACCGGTGAAACTCAGGCCACACTCAAGGGCTGACTGTCCAGGCGCTCCCTTCAGCCGCCTCGTCGTCAGCGTTCT
2001 TAGTCATGCATTATTCGTGTTAGCTGAAATGCATTCAGACTTTGTTCTGCGGTGCCCACAGGACTTACCCCTGTATGTAC
2081 AGGATTTTTGTATGAAAGTTTTGTTTGATTCTGAGACTCTCTTGGGAACGCTGGAGAGCTTGTGCACAGCCTCTGGAAGG
2161 AAAGGCAGCGCTGACTTCGTTGGGCTTTTTTCCAAGCACTTTAACTTCAGAAATGGTCTTGACACTTTTTTCTCCACATA
2241 GACTCTTGAAATAGCCATTTCAGGGGAGGAAAGGGTTGGGGTTTTCTTTGTTTGTTTGTTTGTTTCCCCCTTTACTACCT
2321 GTTCTTGTAGATCTAGCTCCTCAGAGTTGGAGGAAGGCTGACAGAGAAGGTCTCCTCTGTGCTCCATCCACACAGGATGC
2401 CGGAGAGACAGCCCCTTGTGCTGTGAGCAGAGCAGGCAGTGGCTCTGGAGGCTGCCTGTGGTCTCCTTCCGGCTGTGGCT
2481 GACAGTGGCTCTGGCCAGGGTTGCTTGGAGAAGGCTCAGTGTGCCTGGGACAGGGCTTACCACCTGCCACCAAGGTTTCC
2561 TCTCTTCCCCCAGGACCTGGGCAGAGCAGGCATGAGCTGGGCTGTGGTGCAGAGCAAGCAGACCCAGCCACACTGCTCAA
2641 AGGTCCCTGCGTGGGGAGGTGTCACACCAGGGGCACACCCAGGGCCACCTGGGTGTAGGAGAGCTCTGGTGGCCCCTCCG
2721 TAAACTCAGGAAGTGTCAGGTGATTTCCTAGGGAGAGGTTCCCAGTCCCAGCAGGCAGAATGCCCAAAACCAGGAGCACG
2801 AAGGCCTGTCATCCATGGGGCCATTGCAGGCACTCTGCCGCCCGACCTTGAGGGCTGTGCCAATCCTAGTGAACCAAAAT
2881 GCAAACAACTCACACAAGTGAAAAGCTCCCTGCTTTGAAAACAGGACATGTTGACAGGCAGCATGGTATGTTTTTAGCCT
2961 TTGTTACAGTTTTAGCAACATTGATGTCTAAGAGGGGCCGTGGTAATAGATTGCATCTGCCCTGTGCATGCGCATGTTTA
3041 ACCACAGGCCAGAGAACTCAATTCTGATGTCGTAAGTTCTCTGTAAGTGAAATGGGGTAGACTGTATGATTTTCCTATTG
3121 CCAAAAGAAAGAAAGGGGGCCAAACAGCTCTGAAATTTCCAAAAAATGGCTAGAGGGAGAGTCCAGTTTCTGAGCTCTGT
3201 ACCCAAATTAAAATCCTGATGTTCAGGTTAATCCAAGCAACACGCATTGGGTTTAAAACCAGCACCGAGGCCCAGTGGGG
3281 GAATCACAGACATCACCAAGTCTCGTCTTCTTTCCTTCCTGTGAGTTGAAACCAAACAGGCCTCTCGCTCACTCCTCCCA
3361 GCCCAGTAATGCTGAGGAGTTCAGTTGTGAGGAAAGAAGGCTGGAGCTGTGAGATTCGCTTTTCCCTAGGCTGTTCCGCG
3441 TGGGTTACCTTATCACCCTGGAGCACTTGGTATTCCAGACCCCTGACATGAGGAATGCAGGTTCACACTGTAAAGAGTTT
3521 GTGAAAGGTTTCAGTCTAACTGGGGTTCCTTAGCTGGAAGCCAGGGCTGGAAGCTACAGGCCTGACCTTCCTGGGTCCCA
3601 CTATCTGTTGGCATTTTTTTTTTTTTTTTTTTTTTAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGACAC
3681 AATCTCTACTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATGACAG
3761 GTGCACGCCACCACGCCCGGCTAATTTTTATATTTTTGGTAGAGATGGGGTTTCACCATGCTGGCCAGGCTGGTCTCGAA
3841 CTCCTGACCTCAGGTGATCCCCCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGGCATCACACCTGCCTCT
3921 GTTGGCTTTTTAGTTAGGAAGGATCCAGCTAGGCCCGTGTGGTTAGATCAGCTTTGTTACTGAATTACCTAAAACCAGAC
4001 CACAGCACAGCCAGGGAGCCCAGTAGTGTTTCCAAGAACAGTGTGGAGCTTGAGAAAGAGAACTTTAAAAATTAGAGGGT
4081 CCCTTTCTGCAGAGGAAGGGATGCTCGCAGGGTGGCAGTGGCCCAGCCCCAGCCTCAGGGACGGGGAGGGAGAGCCCCCT
4161 CTGGGCCCAGCAGGCAGGTGTTCTGAGGCTGGTCCCTCCTCAGTTTCCGCAGCCACAAGGCGAAACGGCCAGATTCTCAC
4241 TCAAGGTCGTTCTCACTCCTTTTCCTGTCCCGTTTCCAGTCCCACTGAGCCATTCACTTCTGCTGAACCATTTTTCTTAG
4321 GATGCAGCCGTCTCACTCCCTTGTCCTGTAAATCGTGTATTCATGTTGATGATTCTTGGAGATAGGTTTCACTTTTTCCC
4401 AGCTGCGTCCACAGGAAAGGGGAGTCGGATGCCAGCTGCACCCCGCCTGGCTCGCACAGGCTAAGACCACAGACAGAGCA
4481 GGGCTTCCCGGAGCCACACAGGCCACGCACCCCAGGAACCCTTGCTGCCGCGGGCCAGGAACAGGAATGTGTTGGTGCCT
4561 GAGACACCAAATGGAAGAAGCACATCAAGACTGTTCTCCTGCGGCCAACACTGGCCCGGAAGCCGCCCTCCATACAGGCC
4641 CTCAGGGGGCCTGCCTTCTGCGCCTCAGTCCCCCGTGCATCCCTGGGCCTGGGTATCACATGCTCTCCAGGAAAGGGACG
4721 GAATCAATCCTGTGACCGATGGGCTCGCAAGGATGGGTGCCGCCGTGGGAGCCCTGCCTCTGGTGCTGGCAAGGGATTGG
4801 GTTTGTGTGGGTGTCTCTAGCCTGCAGAGTGCAGTGAGTGAGAGTCCTTGGGAGCGCGGCGCTGCCTGTAGCTGTGCCTG
4881 GGGATGCACGTGGCCACGGGATTTCAGTGGGACAGCGCTCCCACAGGGGCTGGGGGTGGGGGTGGGGTTTCTTAGTTACT
4961 GTTGGAAAGGGAAAAATTCACCATATCCAAGGGGAGAGACGATGGGCTGGGTTTGTTTACTCCAACTTCCCTTCTACACC
5041 CCTCCTGCAGGACAGTACGATTTGGGGAGAACCCAGCTCCCCACTTTATCTGCAGACTCTGGGACCTGACAAAACAGTCA
5121 GAGCCTGAGTGCACTGCAGCCTGAACTCCCTTGAGCAGCGCTATAAGGGACTTTGCACTTTAAAAAGGGGATGCCTGTCA
5201 GTAAATCCCCTGTGCATTGACTAGAACTGGGGGGCTGCGCCCGCTCCCTCCTTAATCCTAGATGATTTGCTCATGAAATA
5281 GAGGTGGGGGACGACCGCATGCACTCTGGGAGGTGCAGCCCTAAGGGGTGGACTCCAGATCTCCCTGCAAGAGACAGCTT
5361 GGCTTGGCTTTGGCTGTTGGGGAGGAGTCCCTGCCATCCCGGTGAGCCTGGGGCTGTTGCTTAGGGTCTTCTGGGTGGAC
5441 ACGTGGAGAAAGAGAAGGCAAACGTTGGAACACTAGGAAAAGCTAGAAATTCAGACAACACACATGGATCCCCTTAAAAC
5521 ATGTAAATGTGTCAGAACACGGTTGACCTGCCGCCTTCTTGAACCTGGTGGCCCCCGTTGGAACTATCAGTGGCGTCTCC
5601 CATGCACACGCCCTCTGCTTTCTCTTTCCTAGACTCGCGGTGCTCACATCCAGACATTACCTTGTTGGTAGCCCCCAAGT
5681 GGCGTGCAGTGACACCAGTATCTTCTCTGTTGCATTTTTGCAATCTTGTGTCCCGCTCGGTGATGTTCTACAAACTCTGT
5761 TTTAAGGTTGAGAAAGTTTCAAGGGTGAAGATCTCAAAACAGTGCTAAAATCAAAGGTGTTTGCTGTGAAGAAAAACATG
5841 TGTATATATTGCACCTTGAGTTGTCAGAAGGTAGAAACTGAAATAAACTAACTTTAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gggaguuuuucCUUCGUGAAa 5'
                     |:||||||| 
Target 5' cttatcaccctGGAGCACTTg 3'
 3449 - 3469 146.00 -14.61
2 
miRNA  3' gggaguuuuuccUUCGUGAAa 5'
                      |||||||| 
Target 5' gggcttttttccAAGCACTTt 3'
 2182 - 2202 145.00 -9.70
3 
miRNA  3' gggaGUUU--UUCCUUCGUGAAa 5'
              ||||  :| ||||||| | 
Target 5' acacCAAATGGAAGAAGCACATc 3'
 4564 - 4586 131.00 -10.82
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN13694862 14 COSMIC
COSN30499978 20 COSMIC
COSN30631426 21 COSMIC
COSN26981333 43 COSMIC
COSN13694869 67 COSMIC
COSN28852624 70 COSMIC
COSN30106876 74 COSMIC
COSN31581371 123 COSMIC
COSN31576613 144 COSMIC
COSN31518035 152 COSMIC
COSN29426446 266 COSMIC
COSN24387257 390 COSMIC
COSN9445306 637 COSMIC
COSN4767923 751 COSMIC
COSN22335952 1727 COSMIC
COSN23454901 2720 COSMIC
COSN26458048 2838 COSMIC
COSN23551301 3073 COSMIC
COSN7157147 3303 COSMIC
COSN19265228 4071 COSMIC
COSN32056069 4445 COSMIC
COSN1191767 4901 COSMIC
COSN16534610 4920 COSMIC
COSN23046909 4944 COSMIC
COSN22644049 5020 COSMIC
COSN30164663 5083 COSMIC
COSN26595996 5239 COSMIC
COSN31566888 5253 COSMIC
COSN30174705 5282 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769935305 2 dbSNP
rs779231870 6 dbSNP
rs545110917 13 dbSNP
rs200575008 14 dbSNP
rs1225731021 16 dbSNP
rs897765281 19 dbSNP
rs371042966 20 dbSNP
rs375522461 21 dbSNP
rs769953094 22 dbSNP
rs368558399 24 dbSNP
rs745874074 28 dbSNP
rs1198195711 33 dbSNP
rs372160511 34 dbSNP
rs1451489374 37 dbSNP
rs775777516 38 dbSNP
rs762972683 39 dbSNP
rs1425109014 40 dbSNP
rs1328002688 41 dbSNP
rs764178725 44 dbSNP
rs375509169 52 dbSNP
rs1388427565 53 dbSNP
rs1358002936 54 dbSNP
rs775648819 56 dbSNP
rs942280418 57 dbSNP
rs1485981602 58 dbSNP
rs982319070 59 dbSNP
rs541506036 61 dbSNP
rs561356200 62 dbSNP
rs544687697 65 dbSNP
rs530346007 66 dbSNP
rs57107199 69 dbSNP
rs1487464123 70 dbSNP
rs1259699113 77 dbSNP
rs1008100643 80 dbSNP
rs946721891 81 dbSNP
rs1018530410 82 dbSNP
rs910651339 84 dbSNP
rs1338048461 93 dbSNP
rs1314143925 94 dbSNP
rs1377769144 97 dbSNP
rs899624119 99 dbSNP
rs769238698 113 dbSNP
rs1001207354 118 dbSNP
rs1435943212 118 dbSNP
rs1374355808 119 dbSNP
rs553682356 123 dbSNP
rs1397641608 128 dbSNP
rs774902505 130 dbSNP
rs762203248 131 dbSNP
rs1420359885 134 dbSNP
rs767138324 137 dbSNP
rs987747892 138 dbSNP
rs532801307 139 dbSNP
rs1207861606 140 dbSNP
rs187279878 143 dbSNP
rs1023111282 152 dbSNP
rs1362504590 153 dbSNP
rs971171506 155 dbSNP
rs980508633 162 dbSNP
rs565307245 164 dbSNP
rs1294705261 169 dbSNP
rs1233533565 172 dbSNP
rs1354210340 174 dbSNP
rs780537634 187 dbSNP
rs530078428 188 dbSNP
rs145733247 189 dbSNP
rs534426859 190 dbSNP
rs1355668907 191 dbSNP
rs942183878 192 dbSNP
rs974095161 193 dbSNP
rs919493413 195 dbSNP
rs1165840641 198 dbSNP
rs1461131798 200 dbSNP
rs1411704079 207 dbSNP
rs1179088470 209 dbSNP
rs988372697 210 dbSNP
rs929332065 228 dbSNP
rs1177956677 231 dbSNP
rs3829515 236 dbSNP
rs542286751 237 dbSNP
rs1213920817 238 dbSNP
rs1320813541 240 dbSNP
rs34425270 246 dbSNP
rs760187219 246 dbSNP
rs1278107419 247 dbSNP
rs1225020175 250 dbSNP
rs1279444456 252 dbSNP
rs1373457574 252 dbSNP
rs113550717 256 dbSNP
rs1039091281 257 dbSNP
rs536893792 261 dbSNP
rs899675623 280 dbSNP
rs1231954156 290 dbSNP
rs1479479658 296 dbSNP
rs1348398823 305 dbSNP
rs557107181 308 dbSNP
rs577070374 316 dbSNP
rs539693938 317 dbSNP
rs892379212 320 dbSNP
rs1009221718 323 dbSNP
rs1024599980 326 dbSNP
rs559010707 329 dbSNP
rs3751754 331 dbSNP
rs1423748528 333 dbSNP
rs1244576055 334 dbSNP
rs374400944 334 dbSNP
rs970344446 338 dbSNP
rs541418292 340 dbSNP
rs1316917458 344 dbSNP
rs55711779 345 dbSNP
rs1354136425 346 dbSNP
rs1444771943 354 dbSNP
rs963906997 360 dbSNP
rs574868590 361 dbSNP
rs1048956046 367 dbSNP
rs1371378358 370 dbSNP
rs1290810159 373 dbSNP
rs973597098 377 dbSNP
rs528018832 390 dbSNP
rs1344674772 391 dbSNP
rs1272991157 393 dbSNP
rs1003655880 405 dbSNP
rs116956564 406 dbSNP
rs201881527 408 dbSNP
rs1396869441 409 dbSNP
rs1214617185 411 dbSNP
rs1044073534 413 dbSNP
rs987681154 414 dbSNP
rs563857240 416 dbSNP
rs1253250066 417 dbSNP
rs1486021581 421 dbSNP
rs943353164 424 dbSNP
rs532715708 426 dbSNP
rs892624461 428 dbSNP
rs926040961 429 dbSNP
rs1193471427 431 dbSNP
rs1009750719 436 dbSNP
rs1298266294 439 dbSNP
rs936540840 440 dbSNP
rs1476701236 448 dbSNP
rs1169021036 453 dbSNP
rs1416650932 454 dbSNP
rs1376179205 456 dbSNP
rs968332861 457 dbSNP
rs1053542136 459 dbSNP
rs1357197505 460 dbSNP
rs892265129 462 dbSNP
rs1172348624 466 dbSNP
rs1009458992 467 dbSNP
rs1046271240 468 dbSNP
rs906220222 470 dbSNP
rs546441091 471 dbSNP
rs191766657 472 dbSNP
rs963153385 474 dbSNP
rs3751755 485 dbSNP
rs1012489206 488 dbSNP
rs1253415864 492 dbSNP
rs984589546 494 dbSNP
rs1256353913 495 dbSNP
rs1235377785 496 dbSNP
rs547776834 501 dbSNP
rs1312166947 505 dbSNP
rs948654673 510 dbSNP
rs1028332202 512 dbSNP
rs1328108856 515 dbSNP
rs1431331995 516 dbSNP
rs987733353 520 dbSNP
rs1269559908 521 dbSNP
rs567854091 523 dbSNP
rs1399311107 527 dbSNP
rs1168007010 530 dbSNP
rs1234653315 532 dbSNP
rs184687720 534 dbSNP
rs965095806 535 dbSNP
rs974767855 537 dbSNP
rs1209592489 538 dbSNP
rs906848911 540 dbSNP
rs1288108417 553 dbSNP
rs550525012 560 dbSNP
rs1256577582 561 dbSNP
rs570593756 561 dbSNP
rs936107007 563 dbSNP
rs1264903442 566 dbSNP
rs539243539 567 dbSNP
rs891570924 570 dbSNP
rs913751174 576 dbSNP
rs151224606 577 dbSNP
rs945199355 580 dbSNP
rs1476874998 581 dbSNP
rs1245215255 585 dbSNP
rs189114480 587 dbSNP
rs1329133863 589 dbSNP
rs1442612314 593 dbSNP
rs1391064574 595 dbSNP
rs904053775 599 dbSNP
rs1007809905 605 dbSNP
rs535061935 606 dbSNP
rs937711014 607 dbSNP
rs1195933541 611 dbSNP
rs1469056058 613 dbSNP
rs1266883408 614 dbSNP
rs1401084043 615 dbSNP
rs1486850319 620 dbSNP
rs1261398561 623 dbSNP
rs1018299314 628 dbSNP
rs369873378 629 dbSNP
rs1236160755 630 dbSNP
rs898789322 636 dbSNP
rs994605070 640 dbSNP
rs1331506054 641 dbSNP
rs1026038785 646 dbSNP
rs1384731256 647 dbSNP
rs1386480506 649 dbSNP
rs886632880 663 dbSNP
rs1009049482 665 dbSNP
rs1019247088 668 dbSNP
rs1419591232 670 dbSNP
rs1379050020 676 dbSNP
rs964982155 680 dbSNP
rs975364860 681 dbSNP
rs1196951235 682 dbSNP
rs1033016545 683 dbSNP
rs1293423897 684 dbSNP
rs957573173 685 dbSNP
rs554965162 686 dbSNP
rs950810003 694 dbSNP
rs1283748393 696 dbSNP
rs1274092893 697 dbSNP
rs988884470 702 dbSNP
rs777373337 703 dbSNP
rs1398792526 713 dbSNP
rs945251752 713 dbSNP
rs981904317 722 dbSNP
rs367599392 723 dbSNP
rs937947845 726 dbSNP
rs1476502176 728 dbSNP
rs574841309 729 dbSNP
rs1055427233 731 dbSNP
rs543868964 732 dbSNP
rs1424544055 733 dbSNP
rs909042143 735 dbSNP
rs1487617928 736 dbSNP
rs1213086053 739 dbSNP
rs1258259331 745 dbSNP
rs1476846257 746 dbSNP
rs1259722060 748 dbSNP
rs898842193 750 dbSNP
rs557286132 751 dbSNP
rs1277613900 752 dbSNP
rs1047533987 753 dbSNP
rs1365820511 759 dbSNP
rs886186154 761 dbSNP
rs1009102589 762 dbSNP
rs1157820190 762 dbSNP
rs550215203 765 dbSNP
rs1436451982 766 dbSNP
rs1313438837 768 dbSNP
rs900628009 772 dbSNP
rs756368931 773 dbSNP
rs1330460596 777 dbSNP
rs1340454359 778 dbSNP
rs1332799944 789 dbSNP
rs1411962395 791 dbSNP
rs1033666296 794 dbSNP
rs1401488593 800 dbSNP
rs957393195 802 dbSNP
rs371900476 805 dbSNP
rs749360045 806 dbSNP
rs972240615 806 dbSNP
rs912952809 807 dbSNP
rs947113061 808 dbSNP
rs150199503 812 dbSNP
rs193020431 813 dbSNP
rs773870691 820 dbSNP
rs927840131 821 dbSNP
rs937812354 822 dbSNP
rs1274485485 829 dbSNP
rs1008172093 830 dbSNP
rs1482936483 832 dbSNP
rs528750168 839 dbSNP
rs920488092 840 dbSNP
rs1445012219 842 dbSNP
rs541433094 844 dbSNP
rs1438654880 845 dbSNP
rs1178279345 847 dbSNP
rs1378207811 852 dbSNP
rs1047419699 853 dbSNP
rs1397018171 864 dbSNP
rs201590963 866 dbSNP
rs944441814 869 dbSNP
rs199570262 871 dbSNP
rs997436308 872 dbSNP
rs1441532539 882 dbSNP
rs1377059214 883 dbSNP
rs1040503804 886 dbSNP
rs561677293 887 dbSNP
rs996729930 891 dbSNP
rs1054755712 892 dbSNP
rs185641856 897 dbSNP
rs550686199 906 dbSNP
rs1221854434 910 dbSNP
rs1396743167 916 dbSNP
rs1242950628 923 dbSNP
rs1355099266 931 dbSNP
rs1308956762 936 dbSNP
rs893382156 954 dbSNP
rs190500758 964 dbSNP
rs761489337 966 dbSNP
rs201617745 967 dbSNP
rs1436043200 975 dbSNP
rs971349446 984 dbSNP
rs373916940 987 dbSNP
rs952374711 996 dbSNP
rs969888634 1007 dbSNP
rs1034832160 1008 dbSNP
rs959257925 1010 dbSNP
rs181025666 1014 dbSNP
rs185002418 1019 dbSNP
rs769324175 1025 dbSNP
rs1304796713 1026 dbSNP
rs535703546 1027 dbSNP
rs1312159150 1035 dbSNP
rs951949900 1041 dbSNP
rs1488342756 1042 dbSNP
rs1285876861 1050 dbSNP
rs1215088917 1053 dbSNP
rs1314247472 1056 dbSNP
rs1302480322 1057 dbSNP
rs1218861442 1061 dbSNP
rs1253099157 1070 dbSNP
rs555023899 1073 dbSNP
rs1365805834 1077 dbSNP
rs988761021 1078 dbSNP
rs1340188099 1079 dbSNP
rs1400648513 1084 dbSNP
rs1198170862 1088 dbSNP
rs1236594700 1096 dbSNP
rs1360683004 1097 dbSNP
rs568406206 1098 dbSNP
rs944341481 1099 dbSNP
rs1422564671 1100 dbSNP
rs1040148403 1101 dbSNP
rs1477822675 1114 dbSNP
rs1261849096 1116 dbSNP
rs1431418336 1120 dbSNP
rs1172475367 1122 dbSNP
rs921676089 1128 dbSNP
rs537032067 1130 dbSNP
rs1219497509 1133 dbSNP
rs943528346 1134 dbSNP
rs1168026223 1135 dbSNP
rs557454320 1138 dbSNP
rs932204138 1139 dbSNP
rs1055042180 1141 dbSNP
rs146807140 1149 dbSNP
rs879729691 1160 dbSNP
rs1327047809 1164 dbSNP
rs771861303 1165 dbSNP
rs368113834 1167 dbSNP
rs1357215124 1171 dbSNP
rs1041925775 1174 dbSNP
rs907240431 1175 dbSNP
rs1298378229 1176 dbSNP
rs1327037722 1178 dbSNP
rs1003265520 1184 dbSNP
rs1034476829 1186 dbSNP
rs118110545 1189 dbSNP
rs1337276254 1193 dbSNP
rs573202573 1196 dbSNP
rs1482448366 1197 dbSNP
rs905945525 1199 dbSNP
rs1027491409 1200 dbSNP
rs1001342614 1206 dbSNP
rs1256214330 1210 dbSNP
rs951835826 1212 dbSNP
rs4783124 1218 dbSNP
rs959901185 1222 dbSNP
rs562230666 1225 dbSNP
rs965779237 1226 dbSNP
rs976147571 1229 dbSNP
rs1020244309 1230 dbSNP
rs921581683 1232 dbSNP
rs1477204696 1233 dbSNP
rs968347897 1237 dbSNP
rs575224444 1240 dbSNP
rs1368554043 1246 dbSNP
rs989894410 1247 dbSNP
rs910936035 1249 dbSNP
rs914757550 1256 dbSNP
rs543861723 1259 dbSNP
rs946203552 1266 dbSNP
rs1041973296 1268 dbSNP
rs535841046 1271 dbSNP
rs938728952 1272 dbSNP
rs1056206865 1274 dbSNP
rs1457620465 1276 dbSNP
rs894435319 1278 dbSNP
rs1047938077 1280 dbSNP
rs1264994787 1281 dbSNP
rs996014483 1284 dbSNP
rs1027042073 1291 dbSNP
rs1456725604 1292 dbSNP
rs772495945 1294 dbSNP
rs1291130017 1295 dbSNP
rs887633646 1296 dbSNP
rs1035803273 1303 dbSNP
rs1361813049 1306 dbSNP
rs533021441 1307 dbSNP
rs1159821602 1308 dbSNP
rs1362432559 1314 dbSNP
rs1014884585 1315 dbSNP
rs1201259092 1317 dbSNP
rs1434048010 1319 dbSNP
rs34908254 1319 dbSNP
rs1276439962 1321 dbSNP
rs1357472731 1324 dbSNP
rs1208187351 1329 dbSNP
rs1489324882 1330 dbSNP
rs1288024034 1337 dbSNP
rs966365264 1342 dbSNP
rs1020192479 1343 dbSNP
rs1234090220 1354 dbSNP
rs1312287746 1358 dbSNP
rs1234925279 1371 dbSNP
rs188738933 1372 dbSNP
rs1300196505 1377 dbSNP
rs1402514330 1378 dbSNP
rs1341844626 1386 dbSNP
rs546821782 1387 dbSNP
rs140630370 1390 dbSNP
rs1217756120 1391 dbSNP
rs529218395 1395 dbSNP
rs953047479 1398 dbSNP
rs989889907 1400 dbSNP
rs1466723162 1402 dbSNP
rs914303040 1403 dbSNP
rs1377231873 1404 dbSNP
rs963768958 1412 dbSNP
rs1487947750 1413 dbSNP
rs976893631 1421 dbSNP
rs922368338 1428 dbSNP
rs1194295122 1429 dbSNP
rs1402036330 1430 dbSNP
rs1487945488 1431 dbSNP
rs933466431 1432 dbSNP
rs1201917865 1436 dbSNP
rs1345495049 1438 dbSNP
rs1254986823 1442 dbSNP
rs549290880 1447 dbSNP
rs983586542 1448 dbSNP
rs1278346756 1455 dbSNP
rs569032264 1457 dbSNP
rs117682507 1458 dbSNP
rs977550439 1463 dbSNP
rs1396933348 1465 dbSNP
rs1180860118 1485 dbSNP
rs928784453 1488 dbSNP
rs1411253473 1489 dbSNP
rs1037995608 1490 dbSNP
rs905842418 1494 dbSNP
rs1422428516 1497 dbSNP
rs1161785048 1501 dbSNP
rs937388311 1505 dbSNP
rs181224917 1509 dbSNP
rs145776498 1511 dbSNP
rs867922331 1514 dbSNP
rs539499613 1518 dbSNP
rs185273707 1519 dbSNP
rs553170465 1521 dbSNP
rs573137362 1527 dbSNP
rs1448870175 1534 dbSNP
rs535632216 1541 dbSNP
rs1000500684 1547 dbSNP
rs760404895 1547 dbSNP
rs765966462 1555 dbSNP
rs1286402478 1559 dbSNP
rs1377337608 1565 dbSNP
rs1018218981 1567 dbSNP
rs115689233 1568 dbSNP
rs1340244486 1570 dbSNP
rs1225233077 1582 dbSNP
rs887182925 1584 dbSNP
rs1004266810 1588 dbSNP
rs1335193676 1594 dbSNP
rs1014769223 1595 dbSNP
rs1401243932 1599 dbSNP
rs1339047546 1602 dbSNP
rs1307378482 1604 dbSNP
rs901654510 1608 dbSNP
rs997856772 1609 dbSNP
rs1028899483 1610 dbSNP
rs953184588 1615 dbSNP
rs1282398223 1616 dbSNP
rs575838785 1623 dbSNP
rs1021362864 1624 dbSNP
rs544207781 1625 dbSNP
rs1203377834 1628 dbSNP
rs1435508321 1629 dbSNP
rs1291487568 1636 dbSNP
rs908048673 1639 dbSNP
rs963604038 1652 dbSNP
rs1313585127 1654 dbSNP
rs1481439380 1656 dbSNP
rs977100629 1663 dbSNP
rs563883126 1669 dbSNP
rs1308730957 1672 dbSNP
rs927583421 1673 dbSNP
rs928814316 1674 dbSNP
rs960205440 1679 dbSNP
rs992179677 1680 dbSNP
rs1057158804 1688 dbSNP
rs577837119 1691 dbSNP
rs931336504 1692 dbSNP
rs1176253600 1700 dbSNP
rs1048435851 1706 dbSNP
rs1397499196 1712 dbSNP
rs1221599552 1714 dbSNP
rs540294987 1715 dbSNP
rs1290133708 1716 dbSNP
rs1219445347 1717 dbSNP
rs1175506314 1720 dbSNP
rs946109715 1725 dbSNP
rs753866404 1733 dbSNP
rs940107646 1739 dbSNP
rs1041124238 1740 dbSNP
rs776160475 1741 dbSNP
rs1041845409 1748 dbSNP
rs1435802358 1752 dbSNP
rs997343952 1756 dbSNP
rs1444582596 1759 dbSNP
rs1332301066 1760 dbSNP
rs1050810013 1780 dbSNP
rs889028594 1784 dbSNP
rs1375797559 1785 dbSNP
rs1444372895 1786 dbSNP
rs1305529301 1789 dbSNP
rs1158167297 1796 dbSNP
rs1398760073 1800 dbSNP
rs1426781148 1801 dbSNP
rs1191415204 1808 dbSNP
rs558145412 1820 dbSNP
rs191662921 1823 dbSNP
rs1196458636 1824 dbSNP
rs1275834463 1826 dbSNP
rs1021246935 1827 dbSNP
rs759045042 1831 dbSNP
rs3751756 1832 dbSNP
rs1241872951 1836 dbSNP
rs1214034449 1837 dbSNP
rs899750145 1838 dbSNP
rs1223150255 1839 dbSNP
rs997772780 1841 dbSNP
rs548898514 1844 dbSNP
rs562842244 1848 dbSNP
rs149637593 1849 dbSNP
rs1362512019 1852 dbSNP
rs1457590998 1854 dbSNP
rs1428299997 1861 dbSNP
rs1176313982 1864 dbSNP
rs951090731 1867 dbSNP
rs762736851 1868 dbSNP
rs1469026735 1874 dbSNP
rs1426546301 1876 dbSNP
rs1172259904 1878 dbSNP
rs1477876722 1884 dbSNP
rs960507858 1888 dbSNP
rs117417831 1889 dbSNP
rs916031102 1898 dbSNP
rs952944501 1899 dbSNP
rs1203267255 1904 dbSNP
rs1460188665 1915 dbSNP
rs1191151742 1916 dbSNP
rs1219283694 1921 dbSNP
rs751266129 1922 dbSNP
rs1212792031 1924 dbSNP
rs1231069986 1926 dbSNP
rs756456871 1929 dbSNP
rs78306974 1930 dbSNP
rs1041550895 1936 dbSNP
rs576921790 1939 dbSNP
rs993115635 1945 dbSNP
rs374538282 1960 dbSNP
rs1372016571 1962 dbSNP
rs752442609 1965 dbSNP
rs1168939366 1967 dbSNP
rs539433938 1969 dbSNP
rs1414939575 1970 dbSNP
rs1183318708 1975 dbSNP
rs1443200388 1977 dbSNP
rs1041794108 1978 dbSNP
rs1050278824 1982 dbSNP
rs1249756134 1983 dbSNP
rs368954408 1987 dbSNP
rs1011465585 1988 dbSNP
rs755091898 1990 dbSNP
rs902885189 1991 dbSNP
rs546717562 1995 dbSNP
rs1363386028 1996 dbSNP
rs998458948 1997 dbSNP
rs1050989974 2011 dbSNP
rs1035882103 2017 dbSNP
rs181644874 2018 dbSNP
rs1013042466 2019 dbSNP
rs1382610161 2025 dbSNP
rs143371721 2051 dbSNP
rs952829993 2052 dbSNP
rs984402513 2055 dbSNP
rs556687347 2065 dbSNP
rs898248742 2068 dbSNP
rs961411326 2069 dbSNP
rs748693154 2070 dbSNP
rs1034518091 2072 dbSNP
rs1221416096 2072 dbSNP
rs958881489 2073 dbSNP
rs1304456012 2076 dbSNP
rs976769004 2077 dbSNP
rs993064553 2078 dbSNP
rs1387936207 2081 dbSNP
rs1476415759 2082 dbSNP
rs922558603 2086 dbSNP
rs932752502 2093 dbSNP
rs1303059649 2099 dbSNP
rs752519832 2117 dbSNP
rs751600863 2120 dbSNP
rs910397626 2122 dbSNP
rs947208471 2125 dbSNP
rs936092215 2130 dbSNP
rs60563768 2131 dbSNP
rs1178516020 2134 dbSNP
rs1433789825 2136 dbSNP
rs1268347298 2144 dbSNP
rs1198596142 2147 dbSNP
rs1489851265 2148 dbSNP
rs921088290 2150 dbSNP
rs1205453358 2152 dbSNP
rs1349692366 2165 dbSNP
rs575899887 2170 dbSNP
rs1235031512 2176 dbSNP
rs934539639 2180 dbSNP
rs1404572568 2186 dbSNP
rs1321482830 2188 dbSNP
rs1056802921 2194 dbSNP
rs895448405 2196 dbSNP
rs778220271 2200 dbSNP
rs1381946595 2221 dbSNP
rs1383281121 2226 dbSNP
rs1304799322 2237 dbSNP
rs1470465354 2239 dbSNP
rs887045624 2241 dbSNP
rs1346932850 2242 dbSNP
rs1174432577 2243 dbSNP
rs939651494 2244 dbSNP
rs1374657023 2249 dbSNP
rs1193825670 2256 dbSNP
rs1012682723 2257 dbSNP
rs575862264 2273 dbSNP
rs1446197422 2277 dbSNP
rs1038049395 2280 dbSNP
rs1400072936 2282 dbSNP
rs1201782892 2285 dbSNP
rs375492817 2287 dbSNP
rs764375525 2287 dbSNP
rs898191218 2287 dbSNP
rs1221109293 2293 dbSNP
rs538131278 2298 dbSNP
rs1033873761 2299 dbSNP
rs1319398359 2299 dbSNP
rs1234708194 2306 dbSNP
rs1325047772 2309 dbSNP
rs1336603989 2310 dbSNP
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rs1284450165 2324 dbSNP
rs187353367 2328 dbSNP
rs1228152998 2331 dbSNP
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rs1024521650 2336 dbSNP
rs1168420071 2338 dbSNP
rs373190294 2341 dbSNP
rs757369065 2345 dbSNP
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rs1262481826 2356 dbSNP
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rs1015890504 2372 dbSNP
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rs1382513763 2380 dbSNP
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rs192197805 2386 dbSNP
rs573767769 2389 dbSNP
rs975510045 2393 dbSNP
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rs1394194958 2396 dbSNP
rs1029681067 2399 dbSNP
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rs1384447086 2403 dbSNP
rs116442430 2408 dbSNP
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rs1279216581 2490 dbSNP
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rs1440022384 2501 dbSNP
rs1332924255 2505 dbSNP
rs1057407154 2518 dbSNP
rs895512962 2528 dbSNP
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rs1282729087 2548 dbSNP
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rs58072137 2568 dbSNP
rs1014396531 2570 dbSNP
rs1218331883 2571 dbSNP
rs566634577 2577 dbSNP
rs1005269324 2580 dbSNP
rs1222344068 2581 dbSNP
rs903391030 2583 dbSNP
rs1284052375 2588 dbSNP
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rs1442114633 2591 dbSNP
rs28519470 2594 dbSNP
rs1432558664 2595 dbSNP
rs957366247 2597 dbSNP
rs1317188576 2598 dbSNP
rs998459476 2610 dbSNP
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rs1486392291 2644 dbSNP
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rs1030313516 2647 dbSNP
rs531778203 2651 dbSNP
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rs986882613 2659 dbSNP
rs763917683 2660 dbSNP
rs538421084 2664 dbSNP
rs968106943 2666 dbSNP
rs978122855 2667 dbSNP
rs751414618 2668 dbSNP
rs1299033165 2675 dbSNP
rs1216325821 2679 dbSNP
rs956052743 2680 dbSNP
rs992781550 2689 dbSNP
rs917149155 2691 dbSNP
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rs1468777067 2700 dbSNP
rs941109794 2710 dbSNP
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rs879573443 2713 dbSNP
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rs79353727 2721 dbSNP
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rs75037697 2782 dbSNP
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rs1385391700 2993 dbSNP
rs560090482 2999 dbSNP
rs940993823 3000 dbSNP
rs923704250 3001 dbSNP
rs934807807 3007 dbSNP
rs1055042041 3008 dbSNP
rs893339245 3012 dbSNP
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rs760237670 3022 dbSNP
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rs16975218 3035 dbSNP
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rs1008198649 3062 dbSNP
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rs1405514205 3102 dbSNP
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rs903885995 3115 dbSNP
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rs1263190987 3136 dbSNP
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rs1199221290 3166 dbSNP
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rs1227070028 3179 dbSNP
rs1317412035 3182 dbSNP
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rs28561519 3226 dbSNP
rs567115838 3227 dbSNP
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rs1236560227 3254 dbSNP
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rs1439051623 3264 dbSNP
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rs536228301 3273 dbSNP
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rs918224837 3311 dbSNP
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rs1399529925 3314 dbSNP
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rs1287302121 3321 dbSNP
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rs145603540 3325 dbSNP
rs1381700933 3326 dbSNP
rs1182050011 3333 dbSNP
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rs1271712896 3340 dbSNP
rs942852867 3347 dbSNP
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rs781469786 3351 dbSNP
rs1319705548 3359 dbSNP
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rs1052866049 3376 dbSNP
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rs1348509026 3392 dbSNP
rs1304887382 3408 dbSNP
rs1405273675 3409 dbSNP
rs192935008 3410 dbSNP
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rs1014101780 3419 dbSNP
rs1385025621 3427 dbSNP
rs1157713313 3429 dbSNP
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rs1200847238 3434 dbSNP
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rs1238834300 3437 dbSNP
rs572033286 3438 dbSNP
rs116666235 3439 dbSNP
rs1206830113 3440 dbSNP
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rs962627825 3440 dbSNP
rs560835271 3441 dbSNP
rs1285100765 3444 dbSNP
rs1219808560 3448 dbSNP
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rs1272912113 3454 dbSNP
rs955054604 3457 dbSNP
rs1432669249 3458 dbSNP
rs1345377228 3467 dbSNP
rs986977370 3471 dbSNP
rs865869535 3473 dbSNP
rs769286815 3479 dbSNP
rs942903928 3482 dbSNP
rs1443190000 3484 dbSNP
rs1407742631 3489 dbSNP
rs1160950778 3498 dbSNP
rs1414449397 3499 dbSNP
rs775117868 3501 dbSNP
rs1188611430 3505 dbSNP
rs543002089 3511 dbSNP
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rs1186973219 3516 dbSNP
rs1462707923 3529 dbSNP
rs185231030 3536 dbSNP
rs1360979779 3542 dbSNP
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rs796578223 3546 dbSNP
rs1276458605 3549 dbSNP
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rs1031083333 3557 dbSNP
rs1302516218 3562 dbSNP
rs1216045506 3563 dbSNP
rs1365730335 3564 dbSNP
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rs796209898 3577 dbSNP
rs552007002 3578 dbSNP
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rs193252240 3581 dbSNP
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rs1173182893 3588 dbSNP
rs1410867522 3597 dbSNP
rs1045598009 3605 dbSNP
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rs1006276579 3608 dbSNP
rs1244005192 3610 dbSNP
rs1482321765 3613 dbSNP
rs1491149786 3613 dbSNP
rs750529392 3613 dbSNP
rs762005991 3613 dbSNP
rs1225929919 3614 dbSNP
rs1306511607 3614 dbSNP
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rs1370319622 3614 dbSNP
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rs549446557 3614 dbSNP
rs60578037 3614 dbSNP
rs753622415 3614 dbSNP
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rs765186798 3614 dbSNP
rs1038213375 3615 dbSNP
rs1312298751 3616 dbSNP
rs898303372 3617 dbSNP
rs1253931245 3620 dbSNP
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rs79465145 3631 dbSNP
rs528005631 3633 dbSNP
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rs1483313745 3636 dbSNP
rs994519647 3640 dbSNP
rs1180971797 3641 dbSNP
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rs1427304428 3650 dbSNP
rs1415126336 3652 dbSNP
rs1025540610 3654 dbSNP
rs1404275360 3655 dbSNP
rs765101245 3658 dbSNP
rs985599291 3665 dbSNP
rs1399285259 3668 dbSNP
rs1308577817 3670 dbSNP
rs1007885111 3672 dbSNP
rs1439885642 3673 dbSNP
rs912760873 3677 dbSNP
rs1287012306 3680 dbSNP
rs1276570209 3683 dbSNP
rs1391984007 3685 dbSNP
rs1293126025 3691 dbSNP
rs1456624744 3696 dbSNP
rs944277580 3699 dbSNP
rs1218173580 3701 dbSNP
rs1017859662 3706 dbSNP
rs963764559 3711 dbSNP
rs979124848 3712 dbSNP
rs752441468 3714 dbSNP
rs1198896437 3717 dbSNP
rs1267845893 3720 dbSNP
rs1208850104 3723 dbSNP
rs1487275306 3731 dbSNP
rs548142835 3732 dbSNP
rs1262160840 3734 dbSNP
rs1208737976 3735 dbSNP
rs1327884451 3743 dbSNP
rs1266773850 3749 dbSNP
rs1259030556 3752 dbSNP
rs1300955324 3755 dbSNP
rs925470108 3756 dbSNP
rs1364267516 3757 dbSNP
rs1321482046 3758 dbSNP
rs762341162 3760 dbSNP
rs1386633964 3763 dbSNP
rs988824272 3767 dbSNP
rs1478377192 3768 dbSNP
rs567946406 3775 dbSNP
rs918575341 3776 dbSNP
rs535910300 3779 dbSNP
rs566432759 3780 dbSNP
rs762768915 3785 dbSNP
rs1265746759 3810 dbSNP
rs1171696145 3815 dbSNP
rs867033480 3819 dbSNP
rs569655109 3820 dbSNP
rs1255925054 3828 dbSNP
rs183770347 3834 dbSNP
rs1309689743 3836 dbSNP
rs552405823 3837 dbSNP
rs188159876 3839 dbSNP
rs538037187 3853 dbSNP
rs571945599 3854 dbSNP
rs538066313 3859 dbSNP
rs898355715 3861 dbSNP
rs1300681454 3862 dbSNP
rs1464347541 3864 dbSNP
rs1341839101 3865 dbSNP
rs1391822687 3866 dbSNP
rs1030950295 3867 dbSNP
rs1277201982 3868 dbSNP
rs994011280 3871 dbSNP
rs1047455300 3878 dbSNP
rs891050102 3899 dbSNP
rs1008520994 3900 dbSNP
rs1213217220 3906 dbSNP
rs1292633009 3910 dbSNP
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rs1481806613 3917 dbSNP
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rs1222412108 3953 dbSNP
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rs1333428637 3966 dbSNP
rs953121720 3968 dbSNP
rs1489325666 3970 dbSNP
rs1372352034 3972 dbSNP
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rs180735080 3976 dbSNP
rs1194630329 3980 dbSNP
rs1000601496 3986 dbSNP
rs1428868921 3987 dbSNP
rs1387874518 3988 dbSNP
rs987207016 3989 dbSNP
rs1472837083 3997 dbSNP
rs1367423756 4015 dbSNP
rs1484295614 4016 dbSNP
rs912728308 4020 dbSNP
rs1474302260 4022 dbSNP
rs1032036268 4024 dbSNP
rs1204804016 4025 dbSNP
rs534490194 4033 dbSNP
rs1482288533 4034 dbSNP
rs1292278888 4042 dbSNP
rs1210735734 4046 dbSNP
rs1414273076 4050 dbSNP
rs965552686 4067 dbSNP
rs1282449352 4068 dbSNP
rs957133276 4070 dbSNP
rs1352181671 4073 dbSNP
rs1288923380 4078 dbSNP
rs1408977363 4079 dbSNP
rs1429944399 4080 dbSNP
rs1404629285 4084 dbSNP
rs1325077904 4085 dbSNP
rs1405644955 4105 dbSNP
rs1389597538 4107 dbSNP
rs554612719 4108 dbSNP
rs1413273142 4109 dbSNP
rs1471813968 4117 dbSNP
rs1361838066 4124 dbSNP
rs1400127297 4128 dbSNP
rs918045206 4129 dbSNP
rs1297165309 4130 dbSNP
rs1451211104 4132 dbSNP
rs1324389334 4142 dbSNP
rs574665760 4143 dbSNP
rs980997505 4144 dbSNP
rs1268685581 4145 dbSNP
rs926639261 4149 dbSNP
rs941992361 4151 dbSNP
rs916612680 4154 dbSNP
rs973522694 4157 dbSNP
rs948099945 4158 dbSNP
rs1276345899 4160 dbSNP
rs761779634 4167 dbSNP
rs767421246 4172 dbSNP
rs1321192708 4174 dbSNP
rs574973197 4179 dbSNP
rs759859585 4190 dbSNP
rs1456062923 4200 dbSNP
rs929346853 4204 dbSNP
rs184032049 4209 dbSNP
rs890928380 4210 dbSNP
rs1190824099 4212 dbSNP
rs893739374 4215 dbSNP
rs1247544869 4216 dbSNP
rs1206930060 4218 dbSNP
rs1261278977 4219 dbSNP
rs943980389 4222 dbSNP
rs1039585580 4223 dbSNP
rs1219532895 4224 dbSNP
rs899533962 4227 dbSNP
rs1000487065 4228 dbSNP
rs1032088122 4230 dbSNP
rs765352957 4232 dbSNP
rs1361345144 4236 dbSNP
rs1177493727 4238 dbSNP
rs1472354436 4239 dbSNP
rs892224500 4244 dbSNP
rs28499180 4245 dbSNP
rs1170693784 4247 dbSNP
rs28677468 4249 dbSNP
rs1186678644 4250 dbSNP
rs1239119852 4255 dbSNP
rs971274994 4257 dbSNP
rs1026287404 4266 dbSNP
rs1277988666 4268 dbSNP
rs565361195 4269 dbSNP
rs373718057 4272 dbSNP
rs1033928762 4273 dbSNP
rs984801485 4277 dbSNP
rs1296430592 4279 dbSNP
rs1415786393 4283 dbSNP
rs963405784 4284 dbSNP
rs1303903152 4300 dbSNP
rs916580598 4310 dbSNP
rs973408320 4317 dbSNP
rs1310196395 4326 dbSNP
rs948067928 4328 dbSNP
rs780453400 4330 dbSNP
rs928034874 4331 dbSNP
rs1425632248 4344 dbSNP
rs929423262 4347 dbSNP
rs987929947 4348 dbSNP
rs912423949 4354 dbSNP
rs943858573 4355 dbSNP
rs1042792729 4356 dbSNP
rs1313553078 4362 dbSNP
rs1255320140 4364 dbSNP
rs1379838067 4365 dbSNP
rs1206952515 4366 dbSNP
rs1052264661 4369 dbSNP
rs146795917 4370 dbSNP
rs1241522658 4377 dbSNP
rs548001970 4380 dbSNP
rs1202052666 4385 dbSNP
rs1322974463 4399 dbSNP
rs1260149010 4400 dbSNP
rs1227273595 4407 dbSNP
rs548761659 4408 dbSNP
rs1410816289 4416 dbSNP
rs946653840 4416 dbSNP
rs899754448 4417 dbSNP
rs1050337536 4420 dbSNP
rs888749904 4427 dbSNP
rs545888472 4428 dbSNP
rs1350712977 4436 dbSNP
rs1164128157 4438 dbSNP
rs1403685199 4441 dbSNP
rs1053459499 4443 dbSNP
rs1239918436 4445 dbSNP
rs1440168143 4446 dbSNP
rs1472776966 4449 dbSNP
rs370536017 4451 dbSNP
rs892104130 4452 dbSNP
rs897586215 4454 dbSNP
rs993681528 4455 dbSNP
rs1220113776 4457 dbSNP
rs1332108012 4458 dbSNP
rs1025792336 4465 dbSNP
rs1009332030 4473 dbSNP
rs1181040436 4476 dbSNP
rs1202214009 4478 dbSNP
rs1025126196 4486 dbSNP
rs906740793 4490 dbSNP
rs564796215 4491 dbSNP
rs1368499127 4504 dbSNP
rs1401142562 4505 dbSNP
rs1002364822 4507 dbSNP
rs1033814009 4508 dbSNP
rs963623021 4509 dbSNP
rs973627222 4513 dbSNP
rs1161254767 4514 dbSNP
rs1457656356 4516 dbSNP
rs1363188283 4520 dbSNP
rs1156585221 4521 dbSNP
rs982125446 4523 dbSNP
rs1267597554 4528 dbSNP
rs569602342 4529 dbSNP
rs16975222 4530 dbSNP
rs551882234 4531 dbSNP
rs987599898 4532 dbSNP
rs534556203 4533 dbSNP
rs946551513 4535 dbSNP
rs1334031188 4537 dbSNP
rs1313218504 4538 dbSNP
rs965219851 4540 dbSNP
rs1300808760 4542 dbSNP
rs565436276 4548 dbSNP
rs921057508 4554 dbSNP
rs1367648251 4556 dbSNP
rs1321255875 4564 dbSNP
rs1434471618 4568 dbSNP
rs936610994 4570 dbSNP
rs1384086383 4572 dbSNP
rs1287104501 4573 dbSNP
rs1467388174 4575 dbSNP
rs534545431 4576 dbSNP
rs1172606033 4580 dbSNP
rs1452134889 4583 dbSNP
rs1391668662 4596 dbSNP
rs757722969 4603 dbSNP
rs781563668 4604 dbSNP
rs554707619 4605 dbSNP
rs1202743320 4606 dbSNP
rs1483769285 4607 dbSNP
rs3794687 4611 dbSNP
rs1458067712 4612 dbSNP
rs1001913568 4618 dbSNP
rs1248382507 4619 dbSNP
rs1298625101 4623 dbSNP
rs993258047 4625 dbSNP
rs372826090 4626 dbSNP
rs1397767891 4627 dbSNP
rs1402852725 4629 dbSNP
rs1312008296 4630 dbSNP
rs1432637876 4638 dbSNP
rs1371967004 4639 dbSNP
rs1168906771 4640 dbSNP
rs1474775001 4641 dbSNP
rs1428006601 4649 dbSNP
rs755833040 4654 dbSNP
rs995113485 4659 dbSNP
rs537322831 4662 dbSNP
rs950789254 4663 dbSNP
rs1172410597 4664 dbSNP
rs1426166992 4671 dbSNP
rs779571936 4675 dbSNP
rs375826452 4676 dbSNP
rs1298072920 4680 dbSNP
rs1337509135 4688 dbSNP
rs1009307822 4691 dbSNP
rs1018914054 4698 dbSNP
rs1245656967 4700 dbSNP
rs748883556 4701 dbSNP
rs1324217669 4704 dbSNP
rs964769399 4712 dbSNP
rs1345004131 4716 dbSNP
rs1352136078 4720 dbSNP
rs556298926 4721 dbSNP
rs974775546 4722 dbSNP
rs1408958282 4723 dbSNP
rs921111300 4724 dbSNP
rs1164417726 4728 dbSNP
rs957854193 4730 dbSNP
rs7199966 4731 dbSNP
rs1181571070 4738 dbSNP
rs913800460 4739 dbSNP
rs945278264 4745 dbSNP
rs956957159 4748 dbSNP
rs1046489499 4752 dbSNP
rs375831579 4753 dbSNP
rs1272436768 4755 dbSNP
rs915314731 4760 dbSNP
rs773927556 4762 dbSNP
rs145731945 4763 dbSNP
rs927589445 4765 dbSNP
rs1441210844 4766 dbSNP
rs1358311354 4769 dbSNP
rs559134790 4778 dbSNP
rs1333564151 4779 dbSNP
rs967884894 4780 dbSNP
rs1386840420 4784 dbSNP
rs1210361548 4786 dbSNP
rs1393149344 4793 dbSNP
rs1163376621 4795 dbSNP
rs937755938 4796 dbSNP
rs1489650689 4801 dbSNP
rs867521964 4802 dbSNP
rs985940649 4808 dbSNP
rs1468940383 4811 dbSNP
rs910414128 4814 dbSNP
rs1054865407 4816 dbSNP
rs944606918 4818 dbSNP
rs1195368728 4819 dbSNP
rs1263501904 4826 dbSNP
rs899352677 4828 dbSNP
rs1251163404 4835 dbSNP
rs1331044103 4836 dbSNP
rs1284884535 4846 dbSNP
rs78442653 4852 dbSNP
rs1348360717 4856 dbSNP
rs918921072 4857 dbSNP
rs368967371 4858 dbSNP
rs748124443 4859 dbSNP
rs572533088 4861 dbSNP
rs1403229289 4862 dbSNP
rs1427772631 4863 dbSNP
rs115321175 4875 dbSNP
rs386793492 4875 dbSNP
rs11548969 4876 dbSNP
rs189775140 4877 dbSNP
rs996246351 4879 dbSNP
rs1190539229 4880 dbSNP
rs1003790895 4888 dbSNP
rs1033039308 4890 dbSNP
rs575689487 4891 dbSNP
rs989726352 4893 dbSNP
rs1356601937 4897 dbSNP
rs956694045 4898 dbSNP
rs1049293827 4899 dbSNP
rs1485306306 4907 dbSNP
rs1022350652 4914 dbSNP
rs1362087588 4916 dbSNP
rs1260030665 4917 dbSNP
rs1429172006 4918 dbSNP
rs35466996 4919 dbSNP
rs1361413207 4921 dbSNP
rs1335231449 4924 dbSNP
rs1434514230 4926 dbSNP
rs968092654 4928 dbSNP
rs1425980629 4931 dbSNP
rs1170762655 4932 dbSNP
rs1450163740 4935 dbSNP
rs1184723234 4936 dbSNP
rs181840623 4937 dbSNP
rs1239163812 4938 dbSNP
rs1306110178 4938 dbSNP
rs760354769 4939 dbSNP
rs111674934 4940 dbSNP
rs965883347 4943 dbSNP
rs1345867817 4944 dbSNP
rs186954792 4945 dbSNP
rs565444997 4947 dbSNP
rs1381914722 4948 dbSNP
rs1294493795 4960 dbSNP
rs527267766 4964 dbSNP
rs192094070 4971 dbSNP
rs937641394 4974 dbSNP
rs1314283134 4977 dbSNP
rs1380562991 4979 dbSNP
rs1310070394 4980 dbSNP
rs375325865 4982 dbSNP
rs1430579909 5001 dbSNP
rs1049214691 5002 dbSNP
rs1415844136 5004 dbSNP
rs1188620786 5010 dbSNP
rs1474752845 5018 dbSNP
rs1309270480 5021 dbSNP
rs112860431 5023 dbSNP
rs1480733499 5026 dbSNP
rs1201800556 5033 dbSNP
rs1323041307 5039 dbSNP
rs1213187493 5042 dbSNP
rs1233273501 5047 dbSNP
rs1257438164 5049 dbSNP
rs111612726 5052 dbSNP
rs1204774586 5053 dbSNP
rs1044203912 5056 dbSNP
rs905329583 5056 dbSNP
rs1372810770 5059 dbSNP
rs930377292 5060 dbSNP
rs536838493 5061 dbSNP
rs62049930 5063 dbSNP
rs944967005 5065 dbSNP
rs764112475 5072 dbSNP
rs1418627342 5074 dbSNP
rs1040591687 5077 dbSNP
rs1249348258 5080 dbSNP
rs1175189753 5086 dbSNP
rs1489167588 5088 dbSNP
rs1253016921 5096 dbSNP
rs1022698900 5098 dbSNP
rs900534746 5100 dbSNP
rs1007589991 5103 dbSNP
rs996131789 5104 dbSNP
rs1017649900 5106 dbSNP
rs557249921 5108 dbSNP
rs751592872 5110 dbSNP
rs1305123376 5111 dbSNP
rs1221207229 5112 dbSNP
rs11548970 5113 dbSNP
rs767983445 5114 dbSNP
rs1280117611 5115 dbSNP
rs1010297468 5116 dbSNP
rs1392175525 5118 dbSNP
rs1021218211 5126 dbSNP
rs186292964 5130 dbSNP
rs1454118674 5131 dbSNP
rs950676950 5133 dbSNP
rs1156685629 5138 dbSNP
rs750857611 5147 dbSNP
rs1395338880 5160 dbSNP
rs1192406631 5161 dbSNP
rs189942733 5166 dbSNP
rs1034930818 5173 dbSNP
rs1250409388 5176 dbSNP
rs959063359 5180 dbSNP
rs1206305448 5182 dbSNP
rs1222531921 5184 dbSNP
rs1259267486 5186 dbSNP
rs1262869238 5191 dbSNP
rs1348815099 5195 dbSNP
rs1303014658 5201 dbSNP
rs990495240 5210 dbSNP
rs774134949 5217 dbSNP
rs1460276665 5220 dbSNP
rs1201047234 5222 dbSNP
rs1234006992 5228 dbSNP
rs568234799 5229 dbSNP
rs979810745 5229 dbSNP
rs572594256 5235 dbSNP
rs141017515 5236 dbSNP
rs1057020660 5238 dbSNP
rs983193160 5239 dbSNP
rs1480846299 5240 dbSNP
rs892659530 5241 dbSNP
rs780405038 5243 dbSNP
rs1044016572 5244 dbSNP
rs1176014138 5247 dbSNP
rs1486228606 5249 dbSNP
rs1279876589 5255 dbSNP
rs554753277 5259 dbSNP
rs1426916829 5264 dbSNP
rs1467030012 5266 dbSNP
rs748892720 5273 dbSNP
rs1226824217 5279 dbSNP
rs1017618494 5289 dbSNP
rs1293405290 5291 dbSNP
rs1040644579 5293 dbSNP
rs762036076 5294 dbSNP
rs1432412529 5295 dbSNP
rs932195021 5297 dbSNP
rs182146893 5298 dbSNP
rs59156608 5308 dbSNP
rs950615887 5314 dbSNP
rs1475732760 5322 dbSNP
rs985082211 5326 dbSNP
rs1186261560 5327 dbSNP
rs1016193765 5328 dbSNP
rs1251542674 5330 dbSNP
rs1321815217 5337 dbSNP
rs1337575175 5341 dbSNP
rs563681156 5351 dbSNP
rs1253063993 5356 dbSNP
rs969690239 5357 dbSNP
rs1335402854 5366 dbSNP
rs532623685 5369 dbSNP
rs545397232 5371 dbSNP
rs979779396 5375 dbSNP
rs558893215 5378 dbSNP
rs1274307621 5382 dbSNP
rs1010763087 5385 dbSNP
rs1337143469 5386 dbSNP
rs116913797 5395 dbSNP
rs1203041096 5401 dbSNP
rs1392528 5402 dbSNP
rs1327350055 5407 dbSNP
rs1490540158 5409 dbSNP
rs1462363286 5413 dbSNP
rs1198934124 5420 dbSNP
rs1003368176 5426 dbSNP
rs1034819413 5429 dbSNP
rs959279793 5432 dbSNP
rs568040137 5435 dbSNP
rs1364567203 5436 dbSNP
rs747639847 5443 dbSNP
rs530779243 5444 dbSNP
rs1254902551 5449 dbSNP
rs1214398548 5451 dbSNP
rs925555092 5457 dbSNP
rs943343068 5464 dbSNP
rs777847771 5465 dbSNP
rs901872940 5466 dbSNP
rs1166860300 5467 dbSNP
rs998003630 5473 dbSNP
rs550463395 5483 dbSNP
rs886233931 5488 dbSNP
rs1006074156 5490 dbSNP
rs1324516783 5496 dbSNP
rs539797993 5499 dbSNP
rs1386200757 5500 dbSNP
rs1300896171 5509 dbSNP
rs570763587 5519 dbSNP
rs1431030990 5529 dbSNP
rs969951016 5534 dbSNP
rs9541 5541 dbSNP
rs715707 5542 dbSNP
rs922079831 5544 dbSNP
rs566115901 5546 dbSNP
rs187304362 5553 dbSNP
rs555095242 5554 dbSNP
rs1360254165 5556 dbSNP
rs1234340624 5557 dbSNP
rs1054621202 5560 dbSNP
rs1221919355 5565 dbSNP
rs1289701913 5566 dbSNP
rs912982458 5569 dbSNP
rs1301861484 5570 dbSNP
rs763107976 5578 dbSNP
rs1327530413 5579 dbSNP
rs574830864 5582 dbSNP
rs967255743 5590 dbSNP
rs979581008 5591 dbSNP
rs754451324 5595 dbSNP
rs914578396 5596 dbSNP
rs1174574420 5598 dbSNP
rs925481690 5603 dbSNP
rs943603129 5604 dbSNP
rs1039298488 5606 dbSNP
rs150250249 5611 dbSNP
rs923233646 5613 dbSNP
rs1192176255 5619 dbSNP
rs1183492445 5624 dbSNP
rs933341665 5628 dbSNP
rs946065169 5630 dbSNP
rs1282013897 5634 dbSNP
rs886539155 5637 dbSNP
rs1392527 5638 dbSNP
rs1215845504 5639 dbSNP
rs371737118 5640 dbSNP
rs577139160 5641 dbSNP
rs907295268 5642 dbSNP
rs1270172480 5651 dbSNP
rs1002921472 5661 dbSNP
rs1056333184 5662 dbSNP
rs905733942 5663 dbSNP
rs1001444316 5665 dbSNP
rs1414327320 5669 dbSNP
rs1361902902 5677 dbSNP
rs894954216 5679 dbSNP
rs1012200844 5684 dbSNP
rs774457687 5685 dbSNP
rs951842799 5689 dbSNP
rs1400886349 5697 dbSNP
rs1009922141 5698 dbSNP
rs546051573 5699 dbSNP
rs1344950357 5700 dbSNP
rs1485115010 5706 dbSNP
rs79389595 5713 dbSNP
rs138925846 5714 dbSNP
rs117219780 5731 dbSNP
rs974928694 5735 dbSNP
rs750903861 5736 dbSNP
rs953526069 5739 dbSNP
rs149440068 5740 dbSNP
rs914820216 5747 dbSNP
rs1300158187 5752 dbSNP
rs1283872235 5755 dbSNP
rs933290699 5756 dbSNP
rs530477293 5759 dbSNP
rs1463934709 5760 dbSNP
rs1205389369 5770 dbSNP
rs1243539284 5776 dbSNP
rs761173310 5779 dbSNP
rs907890847 5782 dbSNP
rs942092206 5785 dbSNP
rs1411179159 5786 dbSNP
rs1178639698 5788 dbSNP
rs1480764897 5790 dbSNP
rs1231755480 5810 dbSNP
rs371358881 5812 dbSNP
rs905660065 5815 dbSNP
rs1041723242 5817 dbSNP
rs550816964 5823 dbSNP
rs928604669 5827 dbSNP
rs564241334 5832 dbSNP
rs112256795 5838 dbSNP
rs1055878117 5839 dbSNP
rs1224486069 5840 dbSNP
rs1372877782 5845 dbSNP
rs895746394 5850 dbSNP
rs1010596141 5854 dbSNP
rs1801813 5865 dbSNP
rs1157630307 5869 dbSNP
rs1396564650 5881 dbSNP
rs1326539639 5889 dbSNP
rs1457209069 5893 dbSNP
rs1491430949 5893 dbSNP
rs1491441306 5894 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9764.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gggaguuuuuccUUCGUGAAa 5'
                      |||||||| 
Target 5' ---cuuuuuuccAAGCACUUu 3'
 		1 - 18
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 9764.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gggaguuuuuccUUCGUGAAa 5'
                      |||||||| 
Target 5' ---cuuuuuuccAAGCACUUu 3'
 		1 - 18
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000566428.1 | 3UTR | CUUUUUUCCAAGCACUUUAACUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000566428.1 | 3UTR | CUUUUUUCCAAGCACUUUAACUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000566428.1 | 3UTR | CUUUUUUCCAAGCACUUUAACUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE35602 Colorectal cancer stromal tissue -0.527 3.4e-3 -0.306 6.8e-2 25 Click to see details
GSE28260 Renal cortex and medulla 0.642 9.0e-3 0.538 2.9e-2 13 Click to see details
GSE21687 Ependynoma primary tumors 0.257 2.0e-2 0.181 7.6e-2 64 Click to see details
GSE26953 Aortic valvular endothelial cells 0.396 2.8e-2 0.150 2.4e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.327 6.4e-2 -0.257 1.2e-1 23 Click to see details
GSE38226 Liver fibrosis -0.336 6.8e-2 -0.017 4.7e-1 21 Click to see details
GSE28544 Breast cancer 0.299 7.8e-2 0.582 1.4e-3 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.287 8.2e-2 0.250 1.1e-1 25 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.522 9.2e-2 -0.375 1.8e-1 8 Click to see details
GSE14794 Lymphoblastoid cells -0.112 1.5e-1 -0.107 1.6e-1 90 Click to see details
GSE32688 Pancreatic cancer 0.124 2.5e-1 0.156 2.0e-1 32 Click to see details
GSE17498 Multiple myeloma -0.087 3.0e-1 -0.031 4.2e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.098 3.4e-1 0.250 1.4e-1 20 Click to see details
GSE27834 Pluripotent stem cells 0.075 3.9e-1 0.076 3.9e-1 16 Click to see details
GSE21849 B cell lymphoma -0.047 4.0e-1 0.066 3.7e-1 29 Click to see details
GSE17306 Multiple myeloma -0.023 4.4e-1 -0.139 1.7e-1 49 Click to see details
GSE19350 CNS germ cell tumors -0.02 4.8e-1 0.101 3.8e-1 12 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
-0.02 4.8e-1 0.101 3.8e-1 12 Click to see details
-0.02 4.8e-1 0.101 3.8e-1 12 Click to see details
-0.02 4.8e-1 0.101 3.8e-1 12 Click to see details
-0.02 4.8e-1 0.101 3.8e-1 12 Click to see details
423 hsa-miR-520e Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006513 CD46 CD46 molecule 4 1
MIRT007338 PFKP phosphofructokinase, platelet 5 9
MIRT052929 MAP3K14 mitogen-activated protein kinase kinase kinase 14 3 1
MIRT052966 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 3 1
MIRT057396 TNKS2 tankyrase 2 2 2
MIRT061195 MED17 mediator complex subunit 17 2 2
MIRT061366 WEE1 WEE1 G2 checkpoint kinase