miRTarBase - #MIRT077083


—
pre-miRNA Information
pre-miRNA hsa-mir-3160-1   
Genomic Coordinates chr11: 46451805 - 46451889
Description Homo sapiens miR-3160-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3160-2   
Genomic Coordinates chr11: 46451807 - 46451887
Description Homo sapiens miR-3160-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3160-3p
Sequence 54| AGAGCUGAGACUAGAAAGCCCA |75
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30582333 1 COSMIC
COSN1535547 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396368683 1 dbSNP
rs1162409303 2 dbSNP
rs1404378453 12 dbSNP
rs1171960732 14 dbSNP
rs1324633375 16 dbSNP
rs1187765019 16 dbSNP
rs1300058326 19 dbSNP
rs1432898407 21 dbSNP
rs1011279103 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol EIF1   
Synonyms A121, EIF-1, EIF1A, ISO1, SUI1
Description eukaryotic translation initiation factor 1
Transcript NM_005801   
Expression
Putative miRNA Targets on EIF1
3'UTR of EIF1
(miRNA target sites are highlighted)		 
>EIF1|NM_005801|3'UTR
   1 GTGCTTGTGGCTCACTGAAGCTTAAGTGAGGATTTCCTTGCAATGAGTAGAATTTCCCTTCTCTCCCTTGTCACAGGTTT
  81 AAAAACCTCACAGCTTGTATAATGTAACCATTTGGGGTCCGCTTTTAACTTGGACTAGTGTAACTCCTTCATGCAATAAA
 161 CTGAAAAGAGCCATGCTGTCTAGTCTTGAAGTCCCTCATTTAAACAGAGGTCAAGCAATAGGCGCCTGGCAGTGTCAAGC
 241 CTGAAACCAAGCAATACCGTCATGTTTCAGCCAAGCCCAGAGCCCTAAGATTACAAACAACTATGGCCGGAACCTCCTCA
 321 GCTCTCCCTCTGCAGAGTTCCCTACCCTAAGAGAATGTTACCACCTGAACAGTCCTCGGTGAATCTGAGAGGAGAGGATG
 401 GGGTAAGGCAGAAGCACCAGCTGTACTACTAGAAGGGAGCTTTTGGTGGTAGATCCCCTGGTGTCTCCAACCTGACTAGG
 481 TGGACAGAGCTCAAAGAGGCCCTCTTACCGCTAGCGAGGTGATAGGACATCTGGCTTGCCACAAAGGTCTGTTCGACCAG
 561 ACATATCCTAGCTAAGGGATGTCCAAACATCAGAATGTGAGGCCAACCTTCTATCAGAGTTAAACTTTTGACAAGGGAAC
 641 AAATCTCAAACTGATCCATCAGTCATGTAGCTAGCTGTAGAGCTTGCAACTTAATAGCAGCAGCTGCCCAATGCCATGTG
 721 AAGTAACAAACTGGTTTTTGGTTTTTTTTTCCCCTTCAGTTTTAATGTTATGTGTAATGTATTTAAACCCTTATTTAAAT
 801 AAAACTTGTTTTCAGAAATA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acccgaaagaucaGAGUCGAGa 5'
                       |||||||| 
Target 5' tggccggaacctcCTCAGCTCt 3'
 304 - 325 145.00 -15.73
2 
miRNA  3' acCCGAAAGAUCAG----AGUCGAGa 5'
            ||:|||:|  ||    ||||:|: 
Target 5' ttGGTTTTTTTTTCCCCTTCAGTTTt 3'
 738 - 763 130.00 -12.50
3 
miRNA  3' acccgaaAGAUCAGAGUCGaga 5'
                 ||  ||:|||||   
Target 5' aataccgTCATGTTTCAGCcaa 3'
 253 - 274 115.00 -9.62
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26581017 6 COSMIC
COSN30110790 10 COSMIC
COSN30146360 18 COSMIC
COSN31559688 26 COSMIC
COSN16128239 28 COSMIC
COSN16128255 29 COSMIC
COSN508047 46 COSMIC
COSN13721012 64 COSMIC
COSN30510793 76 COSMIC
COSN508045 76 COSMIC
COSN13721013 109 COSMIC
COSN30166137 120 COSMIC
COSN508049 133 COSMIC
COSN30110649 139 COSMIC
COSN31535752 142 COSMIC
COSN31585171 150 COSMIC
COSN31498809 172 COSMIC
COSN16128229 189 COSMIC
COSN4905816 271 COSMIC
COSN5839978 366 COSMIC
COSN23015135 639 COSMIC
COSN19402547 727 COSMIC
COSN28798842 735 COSMIC
COSN31550124 751 COSMIC
COSN31661960 751 COSMIC
COSN30539793 816 COSMIC
COSN17187674 1070 COSMIC
COSN6104021 1072 COSMIC
COSN9669165 1092 COSMIC
COSN22904562 1370 COSMIC
COSN1719433 1537 COSMIC
COSN16747429 1581 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs3385 2 dbSNP
rs1221875659 4 dbSNP
rs202075091 5 dbSNP
rs1220035546 8 dbSNP
rs1270731430 11 dbSNP
rs765166479 12 dbSNP
rs1329838964 14 dbSNP
rs995011783 14 dbSNP
rs752435231 15 dbSNP
rs762727751 16 dbSNP
rs1287615592 18 dbSNP
rs1221911330 19 dbSNP
rs1369493830 28 dbSNP
rs1326917042 29 dbSNP
rs1293858871 31 dbSNP
rs1436037660 35 dbSNP
rs1392487684 36 dbSNP
rs1322716290 37 dbSNP
rs764016650 40 dbSNP
rs369680421 41 dbSNP
rs756408532 42 dbSNP
rs779950576 45 dbSNP
rs1411922612 46 dbSNP
rs1157555622 49 dbSNP
rs754001487 51 dbSNP
rs755468309 57 dbSNP
rs1027899448 58 dbSNP
rs546970214 59 dbSNP
rs1203893128 60 dbSNP
rs748719228 62 dbSNP
rs1477498784 63 dbSNP
rs772316263 64 dbSNP
rs746617609 67 dbSNP
rs757542128 68 dbSNP
rs770650862 68 dbSNP
rs1237367876 70 dbSNP
rs776056116 72 dbSNP
rs1190876375 73 dbSNP
rs950983894 74 dbSNP
rs759063637 75 dbSNP
rs1166299265 76 dbSNP
rs1057988 77 dbSNP
rs779376313 78 dbSNP
rs891654717 78 dbSNP
rs1015702088 80 dbSNP
rs775402202 81 dbSNP
rs1415062472 82 dbSNP
rs762988602 87 dbSNP
rs763776039 88 dbSNP
rs970429872 92 dbSNP
rs1450242885 95 dbSNP
rs750963085 96 dbSNP
rs760766673 98 dbSNP
rs11550320 100 dbSNP
rs982243155 101 dbSNP
rs1435966788 102 dbSNP
rs766626820 103 dbSNP
rs1267988604 109 dbSNP
rs536516503 111 dbSNP
rs755095860 113 dbSNP
rs1278591528 116 dbSNP
rs1460358815 120 dbSNP
rs779197632 121 dbSNP
rs777947642 122 dbSNP
rs1464680619 124 dbSNP
rs747406276 126 dbSNP
rs1433242281 131 dbSNP
rs770435785 134 dbSNP
rs1478418891 138 dbSNP
rs750571775 140 dbSNP
rs1428586038 141 dbSNP
rs780812323 142 dbSNP
rs193167092 147 dbSNP
rs769263421 148 dbSNP
rs1804484 155 dbSNP
rs1184201624 157 dbSNP
rs1484230036 162 dbSNP
rs1256516815 173 dbSNP
rs962929804 179 dbSNP
rs371930148 181 dbSNP
rs778509112 186 dbSNP
rs537245729 192 dbSNP
rs1293539076 194 dbSNP
rs945321955 199 dbSNP
rs1141629 201 dbSNP
rs1135942 202 dbSNP
rs1461709632 203 dbSNP
rs1380612929 205 dbSNP
rs1135943 206 dbSNP
rs1182818953 212 dbSNP
rs3209305 216 dbSNP
rs3209306 217 dbSNP
rs752295370 219 dbSNP
rs149841896 224 dbSNP
rs911852605 225 dbSNP
rs944743382 237 dbSNP
rs951557725 240 dbSNP
rs1460066403 246 dbSNP
rs1039494344 250 dbSNP
rs1425005452 253 dbSNP
rs900617676 258 dbSNP
rs983603328 259 dbSNP
rs1484629036 260 dbSNP
rs1253716861 262 dbSNP
rs930796431 263 dbSNP
rs1049281048 272 dbSNP
rs535038124 278 dbSNP
rs1452535489 284 dbSNP
rs1005107128 292 dbSNP
rs1335161905 293 dbSNP
rs1364447021 295 dbSNP
rs926981299 299 dbSNP
rs1322430226 301 dbSNP
rs1383023839 307 dbSNP
rs553367147 308 dbSNP
rs572572898 309 dbSNP
rs758029080 310 dbSNP
rs1051376134 313 dbSNP
rs771251699 313 dbSNP
rs1296067198 314 dbSNP
rs572379207 315 dbSNP
rs1459081316 316 dbSNP
rs1368575271 325 dbSNP
rs756941693 327 dbSNP
rs1003220483 329 dbSNP
rs1414076914 330 dbSNP
rs1182720471 334 dbSNP
rs1308746428 339 dbSNP
rs1436985022 341 dbSNP
rs777450015 345 dbSNP
rs746869778 346 dbSNP
rs542894484 348 dbSNP
rs774414488 350 dbSNP
rs1331924900 364 dbSNP
rs770678628 368 dbSNP
rs781170414 370 dbSNP
rs1039706433 371 dbSNP
rs1186862912 376 dbSNP
rs898525945 378 dbSNP
rs1390936718 379 dbSNP
rs1324703511 389 dbSNP
rs995747922 392 dbSNP
rs561021033 395 dbSNP
rs1459411906 397 dbSNP
rs989258397 398 dbSNP
rs1390800513 400 dbSNP
rs1159784489 403 dbSNP
rs1469529551 404 dbSNP
rs1025939260 407 dbSNP
rs185336518 416 dbSNP
rs1434040723 422 dbSNP
rs375011216 424 dbSNP
rs745787744 427 dbSNP
rs1252606467 428 dbSNP
rs1211943253 429 dbSNP
rs1466288944 438 dbSNP
rs11550322 440 dbSNP
rs1013721244 441 dbSNP
rs539177077 441 dbSNP
rs1349083990 453 dbSNP
rs543233556 454 dbSNP
rs1234408764 456 dbSNP
rs1331397293 459 dbSNP
rs1438145576 461 dbSNP
rs966529390 469 dbSNP
rs1400054386 473 dbSNP
rs1025575490 483 dbSNP
rs1174169466 486 dbSNP
rs4335817 487 dbSNP
rs1466331172 489 dbSNP
rs1394754817 490 dbSNP
rs1469745506 491 dbSNP
rs1174528168 492 dbSNP
rs1347342320 500 dbSNP
rs769873000 503 dbSNP
rs565023651 504 dbSNP
rs1033962848 507 dbSNP
rs532083635 509 dbSNP
rs911816935 510 dbSNP
rs775512340 511 dbSNP
rs1278571263 514 dbSNP
rs974810085 516 dbSNP
rs547007069 517 dbSNP
rs1429405439 519 dbSNP
rs558883357 523 dbSNP
rs1406933097 524 dbSNP
rs930743977 526 dbSNP
rs1284005825 532 dbSNP
rs1336063073 534 dbSNP
rs986623546 536 dbSNP
rs912406636 542 dbSNP
rs11550323 545 dbSNP
rs530332889 547 dbSNP
rs548518093 548 dbSNP
rs942785503 550 dbSNP
rs1039842100 555 dbSNP
rs189051320 556 dbSNP
rs1046369347 560 dbSNP
rs1485608686 561 dbSNP
rs542606748 563 dbSNP
rs111552916 564 dbSNP
rs182001341 566 dbSNP
rs184838884 567 dbSNP
rs114491415 570 dbSNP
rs1479797294 576 dbSNP
rs553403966 580 dbSNP
rs1034101844 582 dbSNP
rs1285406527 586 dbSNP
rs574932453 587 dbSNP
rs1354682770 588 dbSNP
rs989742849 597 dbSNP
rs1411429646 603 dbSNP
rs1371447943 604 dbSNP
rs1328412936 605 dbSNP
rs1020385443 607 dbSNP
rs1163853110 608 dbSNP
rs544113327 608 dbSNP
rs1022019753 610 dbSNP
rs966478807 611 dbSNP
rs201041799 612 dbSNP
rs987150066 613 dbSNP
rs912389272 614 dbSNP
rs551151476 616 dbSNP
rs1184836704 619 dbSNP
rs11550321 620 dbSNP
rs942546882 625 dbSNP
rs975244627 637 dbSNP
rs919974593 643 dbSNP
rs767178977 648 dbSNP
rs931398559 663 dbSNP
rs1213761546 666 dbSNP
rs1291331484 667 dbSNP
rs535837980 677 dbSNP
rs1158853064 678 dbSNP
rs9890480 688 dbSNP
rs369602243 696 dbSNP
rs1440297092 698 dbSNP
rs1019276559 699 dbSNP
rs1324358826 705 dbSNP
rs1460955908 709 dbSNP
rs1392978514 714 dbSNP
rs1047119581 715 dbSNP
rs1365161853 718 dbSNP
rs966012452 724 dbSNP
rs376128665 725 dbSNP
rs796760586 725 dbSNP
rs1468336551 737 dbSNP
rs1002290575 742 dbSNP
rs1011300920 742 dbSNP
rs1270680676 742 dbSNP
rs892860179 742 dbSNP
rs188337224 743 dbSNP
rs967481310 745 dbSNP
rs543626510 748 dbSNP
rs564898213 752 dbSNP
rs1304411925 754 dbSNP
rs1224216427 755 dbSNP
rs1368907473 758 dbSNP
rs1322553337 764 dbSNP
rs1454772642 764 dbSNP
rs1019908910 770 dbSNP
rs1306032346 772 dbSNP
rs1416491682 784 dbSNP
rs1351185546 785 dbSNP
rs1224282038 790 dbSNP
rs1292115905 791 dbSNP
rs963963878 791 dbSNP
rs930647536 798 dbSNP
rs377128485 807 dbSNP
rs907964976 812 dbSNP
rs572296656 814 dbSNP
rs1218828048 815 dbSNP
rs1189873450 821 dbSNP
rs1234056195 822 dbSNP
rs1045940306 823 dbSNP
rs919776012 833 dbSNP
rs1177094230 834 dbSNP
rs1280726188 837 dbSNP
rs1345916743 839 dbSNP
rs775593581 839 dbSNP
rs952754766 839 dbSNP
rs558500905 841 dbSNP
rs908532835 844 dbSNP
rs1446871699 845 dbSNP
rs928865134 846 dbSNP
rs937640212 847 dbSNP
rs1056463168 850 dbSNP
rs949456169 851 dbSNP
rs762307267 859 dbSNP
rs1010531983 861 dbSNP
rs1450755399 863 dbSNP
rs1043424095 866 dbSNP
rs1384915560 872 dbSNP
rs1403797137 874 dbSNP
rs902310007 875 dbSNP
rs999747691 877 dbSNP
rs1046396754 881 dbSNP
rs1018807539 890 dbSNP
rs1392873444 893 dbSNP
rs1171953296 895 dbSNP
rs1428570537 896 dbSNP
rs966284583 897 dbSNP
rs180761085 898 dbSNP
rs1484154793 901 dbSNP
rs1257977766 903 dbSNP
rs1209869594 905 dbSNP
rs1355124857 906 dbSNP
rs1484854195 907 dbSNP
rs996081605 912 dbSNP
rs559022004 914 dbSNP
rs938281029 915 dbSNP
rs951990796 918 dbSNP
rs984822176 919 dbSNP
rs529681694 920 dbSNP
rs1053860625 921 dbSNP
rs907958235 923 dbSNP
rs1247953562 926 dbSNP
rs59742576 930 dbSNP
rs564030523 932 dbSNP
rs1373288079 934 dbSNP
rs531077512 936 dbSNP
rs1462141561 942 dbSNP
rs1011271278 946 dbSNP
rs1041895178 952 dbSNP
rs902934454 955 dbSNP
rs1418483499 959 dbSNP
rs1008273395 960 dbSNP
rs982006860 961 dbSNP
rs928792923 962 dbSNP
rs937524603 963 dbSNP
rs552745289 964 dbSNP
rs750981083 968 dbSNP
rs761196786 969 dbSNP
rs1249705854 972 dbSNP
rs186566866 976 dbSNP
rs11655959 978 dbSNP
rs1043396567 982 dbSNP
rs1293188215 984 dbSNP
rs1231943842 986 dbSNP
rs902257794 987 dbSNP
rs999254288 988 dbSNP
rs1040542808 991 dbSNP
rs1391622392 994 dbSNP
rs1395301669 1000 dbSNP
rs908582173 1005 dbSNP
rs1044512826 1010 dbSNP
rs1164159099 1015 dbSNP
rs996418777 1016 dbSNP
rs1242860565 1019 dbSNP
rs145356229 1020 dbSNP
rs951982867 1026 dbSNP
rs757822498 1035 dbSNP
rs1014964551 1043 dbSNP
rs1212371254 1044 dbSNP
rs1420349042 1046 dbSNP
rs989722164 1049 dbSNP
rs1334848439 1060 dbSNP
rs1442592820 1062 dbSNP
rs915405402 1064 dbSNP
rs1324561508 1067 dbSNP
rs945496252 1068 dbSNP
rs770330052 1071 dbSNP
rs1387033324 1073 dbSNP
rs1042567507 1076 dbSNP
rs962368087 1078 dbSNP
rs1398108916 1079 dbSNP
rs943819867 1081 dbSNP
rs568548249 1082 dbSNP
rs374684318 1084 dbSNP
rs996759532 1085 dbSNP
rs1026942393 1088 dbSNP
rs1176109330 1090 dbSNP
rs1004419563 1091 dbSNP
rs777518310 1092 dbSNP
rs147691660 1093 dbSNP
rs1258098426 1094 dbSNP
rs757097581 1095 dbSNP
rs1236054127 1107 dbSNP
rs142486649 1112 dbSNP
rs1255584570 1122 dbSNP
rs947668256 1126 dbSNP
rs959402479 1127 dbSNP
rs1318915981 1131 dbSNP
rs989441221 1135 dbSNP
rs915457951 1138 dbSNP
rs745840747 1141 dbSNP
rs923606820 1142 dbSNP
rs934991699 1143 dbSNP
rs1242957039 1145 dbSNP
rs1441003779 1147 dbSNP
rs978641303 1148 dbSNP
rs1040086777 1149 dbSNP
rs1193142657 1150 dbSNP
rs901622028 1152 dbSNP
rs931799276 1156 dbSNP
rs763705682 1157 dbSNP
rs1242956462 1159 dbSNP
rs1212025655 1162 dbSNP
rs912086039 1163 dbSNP
rs1217064413 1164 dbSNP
rs1340897798 1171 dbSNP
rs1270205416 1173 dbSNP
rs1475207090 1177 dbSNP
rs1226620799 1184 dbSNP
rs145924330 1186 dbSNP
rs1040850123 1187 dbSNP
rs1431467649 1192 dbSNP
rs1470933652 1197 dbSNP
rs887682654 1200 dbSNP
rs899498043 1204 dbSNP
rs1411829868 1207 dbSNP
rs1006116213 1209 dbSNP
rs1397313632 1212 dbSNP
rs1014871260 1214 dbSNP
rs1167351680 1216 dbSNP
rs1177010273 1219 dbSNP
rs1401379262 1220 dbSNP
rs1474746739 1220 dbSNP
rs1189146976 1221 dbSNP
rs1255798597 1222 dbSNP
rs1412584339 1226 dbSNP
rs1320035307 1230 dbSNP
rs932267079 1236 dbSNP
rs1194728611 1241 dbSNP
rs1316028383 1246 dbSNP
rs1048100957 1250 dbSNP
rs888334416 1259 dbSNP
rs1398938337 1260 dbSNP
rs897787215 1261 dbSNP
rs1004152790 1263 dbSNP
rs1015827921 1266 dbSNP
rs1444660938 1269 dbSNP
rs753469530 1277 dbSNP
rs906397901 1278 dbSNP
rs1408247804 1279 dbSNP
rs1397387482 1282 dbSNP
rs1004032268 1283 dbSNP
rs1461317788 1285 dbSNP
rs1224689219 1286 dbSNP
rs1003293586 1290 dbSNP
rs1416160862 1292 dbSNP
rs868442722 1293 dbSNP
rs1035772183 1295 dbSNP
rs1470994076 1298 dbSNP
rs1233065212 1300 dbSNP
rs959454462 1304 dbSNP
rs1456084395 1306 dbSNP
rs1299512382 1307 dbSNP
rs1255978575 1309 dbSNP
rs1334002020 1312 dbSNP
rs536909744 1318 dbSNP
rs1287543781 1320 dbSNP
rs1225254933 1322 dbSNP
rs11649873 1323 dbSNP
rs989408859 1327 dbSNP
rs959083726 1328 dbSNP
rs1022270161 1333 dbSNP
rs1370856401 1334 dbSNP
rs769673550 1345 dbSNP
rs1373290159 1352 dbSNP
rs1326592449 1355 dbSNP
rs550266820 1357 dbSNP
rs563491574 1358 dbSNP
rs1401624224 1359 dbSNP
rs774718994 1362 dbSNP
rs576675174 1363 dbSNP
rs1254353401 1365 dbSNP
rs1193703981 1366 dbSNP
rs529289495 1371 dbSNP
rs974910369 1374 dbSNP
rs924862537 1376 dbSNP
rs920982442 1378 dbSNP
rs935002775 1383 dbSNP
rs1238262607 1387 dbSNP
rs1350306209 1390 dbSNP
rs1198747257 1391 dbSNP
rs540817825 1392 dbSNP
rs1291164487 1396 dbSNP
rs1432056143 1404 dbSNP
rs151204814 1408 dbSNP
rs1160095278 1410 dbSNP
rs549002454 1410 dbSNP
rs191013345 1411 dbSNP
rs1396507986 1412 dbSNP
rs909575411 1414 dbSNP
rs1453245322 1415 dbSNP
rs1422389663 1416 dbSNP
rs1050186531 1417 dbSNP
rs140315172 1418 dbSNP
rs566017755 1419 dbSNP
rs1036249990 1422 dbSNP
rs1221461634 1423 dbSNP
rs1486799709 1424 dbSNP
rs1281275423 1428 dbSNP
rs1233776800 1433 dbSNP
rs534793313 1434 dbSNP
rs181265616 1435 dbSNP
rs1215684305 1440 dbSNP
rs1329918759 1442 dbSNP
rs1241731675 1448 dbSNP
rs185979606 1453 dbSNP
rs895208786 1456 dbSNP
rs894487638 1459 dbSNP
rs879250404 1460 dbSNP
rs1012928376 1465 dbSNP
rs1294269953 1472 dbSNP
rs1021665109 1475 dbSNP
rs1356942373 1479 dbSNP
rs1490573416 1480 dbSNP
rs868078863 1485 dbSNP
rs1209375161 1486 dbSNP
rs1422792787 1492 dbSNP
rs968824067 1492 dbSNP
rs551628669 1496 dbSNP
rs1031919988 1499 dbSNP
rs528728368 1500 dbSNP
rs1000183049 1501 dbSNP
rs966036530 1505 dbSNP
rs547191520 1506 dbSNP
rs764985533 1506 dbSNP
rs1183856667 1509 dbSNP
rs1276957741 1516 dbSNP
rs1364191404 1517 dbSNP
rs1438911308 1518 dbSNP
rs1235631580 1520 dbSNP
rs1356540886 1521 dbSNP
rs975761348 1524 dbSNP
rs1156582845 1526 dbSNP
rs974880857 1527 dbSNP
rs775539142 1529 dbSNP
rs1386781262 1530 dbSNP
rs1376508280 1532 dbSNP
rs922114309 1536 dbSNP
rs760721472 1538 dbSNP
rs1462027094 1539 dbSNP
rs1398858976 1545 dbSNP
rs922901664 1550 dbSNP
rs1462887156 1552 dbSNP
rs1418321161 1557 dbSNP
rs568592395 1560 dbSNP
rs1292446958 1561 dbSNP
rs1387869046 1563 dbSNP
rs529375012 1569 dbSNP
rs1252891972 1571 dbSNP
rs1177903152 1578 dbSNP
rs1480364066 1579 dbSNP
rs1236393204 1580 dbSNP
rs983902085 1581 dbSNP
rs750008791 1585 dbSNP
rs1376769194 1588 dbSNP
rs985838504 1591 dbSNP
rs1319600418 1598 dbSNP
rs908972584 1598 dbSNP
rs561252373 1601 dbSNP
rs550964596 1610 dbSNP
rs571489342 1610 dbSNP
rs1328616573 1615 dbSNP
rs1443090825 1616 dbSNP
rs1395122341 1617 dbSNP
rs1162476147 1619 dbSNP
rs1317593175 1625 dbSNP
rs1456177879 1626 dbSNP
rs761883340 1630 dbSNP
rs1160150990 1633 dbSNP
rs919164549 1634 dbSNP
rs1439250279 1636 dbSNP
rs569112085 1637 dbSNP
rs1195574253 1639 dbSNP
rs190443071 1640 dbSNP
rs1267241257 1641 dbSNP
rs368876254 1642 dbSNP
rs1057065336 1643 dbSNP
rs772571080 1644 dbSNP
rs1012878542 1645 dbSNP
rs1261612083 1646 dbSNP
rs1352508206 1647 dbSNP
rs1043114701 1648 dbSNP
rs78774608 1649 dbSNP
rs78995515 1650 dbSNP
rs999013966 1651 dbSNP
rs1054864748 1656 dbSNP
rs895010790 1660 dbSNP
rs1196435892 1665 dbSNP
rs1419397254 1665 dbSNP
rs1032286664 1666 dbSNP
rs965588263 1679 dbSNP
rs998821778 1680 dbSNP
rs1010937622 1681 dbSNP
rs1377098479 1682 dbSNP
rs1457262605 1683 dbSNP
rs1197374977 1684 dbSNP
rs1430752010 1690 dbSNP
rs1262937207 1692 dbSNP
rs1043856673 1700 dbSNP
rs1487781649 1701 dbSNP
rs902598507 1702 dbSNP
rs183332637 1708 dbSNP
rs576953847 1709 dbSNP
rs966261733 1712 dbSNP
rs1328117057 1714 dbSNP
rs996455498 1715 dbSNP
rs985830292 1718 dbSNP
rs1315042393 1719 dbSNP
rs908961270 1719 dbSNP
rs10573930 1723 dbSNP
rs202188031 1723 dbSNP
rs377520022 1723 dbSNP
rs757203453 1723 dbSNP
rs200418501 1725 dbSNP
rs3353 1726 dbSNP
rs1170880608 1731 dbSNP
rs1476711619 1733 dbSNP
rs1374111697 1737 dbSNP
rs1193460492 1739 dbSNP
rs1477059797 1744 dbSNP
rs983870939 1748 dbSNP
rs773671712 1750 dbSNP
rs1442584110 1758 dbSNP
rs1167985761 1759 dbSNP
rs1016646947 1760 dbSNP
rs1341442999 1766 dbSNP
rs919060178 1767 dbSNP
rs961429528 1773 dbSNP
rs1217889797 1774 dbSNP
rs552714545 1774 dbSNP
rs1294835400 1777 dbSNP
rs1339104871 1794 dbSNP
rs1383935865 1795 dbSNP
rs1340090345 1810 dbSNP
rs1332322912 1815 dbSNP
rs1395696995 1816 dbSNP
rs927641589 1817 dbSNP
rs1170634565 1819 dbSNP
rs1464464990 1821 dbSNP
rs1328398510 1823 dbSNP
rs1228336758 1826 dbSNP
rs1166090809 1829 dbSNP
rs939258143 1830 dbSNP
rs761286717 1835 dbSNP
rs1184894194 1836 dbSNP
rs1317236290 1839 dbSNP
rs1196608596 1840 dbSNP
rs1197947902 1843 dbSNP
rs1315974934 1843 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acccgaaagaucaGAGUCgaga 5'
                       |||||    
Target 5' uggccggaaccucCUCAG---- 3'
 		15 - 32
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005801 | 3UTR | CUCCUCAGCUCUCCCUCUGCAGAGUUCCCUACCCUAAGAGAAUGUUACCACCUGAACAGUCCUCGGUGAAUCUGAGAGGAGAGGAUGGGGUAAGGCAGAAGCACCAGCUGUACUACUAGAAGGGAGCUUUUGGUGGUAGAUCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_005801 | 3UTR | CUCCUCAGCUCUCCCUCUGCAGAGUUCCCUACCCUAAGAGAAUGUUACCACCUGAACAGUCCUCGGUGAAUCUGAGAGGAGAGGAUGGGGUAAGGCAGAAGCACCAGCUGUACUACUAGAAGGGAGCUUUUGGUGGUAGAUCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_005801 | 3UTR | UCCUCAGCUCUCCCUCUGCAGAGUUCCCUACCCUAAGAGAAUGUUACCACCUGAACAGUCCUCGGUGAAUCUGAGAGGAGAGGAUGGGGUAAGGCAGAAGCACCAGCUGUACUACUAGAAGGGAGCUUUUGGUGGUAGAUCCCCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005801 | 3UTR | UAUGGCCGGAACCUCCUCAGCUCUCCCUCUGCAGAGUUCCCUACCCUAAGAGAAUGUUACCACCUGAACAGUCCUCGGUGAAUCUGAGAGGAGAGGAUGGGGUAAGGCAGAAGCACCAGCUGUACUACUAGAAGGGAGCUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000469257.1 | 3UTR | AUUACAAACAACUAUGGCCGGAACCUCCUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
118 hsa-miR-3160-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066658 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT075318 SF3B3 splicing factor 3b subunit 3 2 4
MIRT077083 EIF1 eukaryotic translation initiation factor 1 2 2
MIRT100381 HSPA1B heat shock protein family A (Hsp70) member 1B 2 6
MIRT135259 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT184913 ZNF268 zinc finger protein 268 2 2
MIRT218862 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT446580 FPR2 formyl peptide receptor 2 2 2
MIRT448834 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT449455 RNF13 ring finger protein 13 2 2
MIRT452284 CARD8 caspase recruitment domain family member 8 2 2
MIRT452628 FAM162A family with sequence similarity 162 member A 2 2
MIRT453454 GLG1 golgi glycoprotein 1 2 2
MIRT454188 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454434 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454575 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT455555 TRAF1 TNF receptor associated factor 1 2 6
MIRT455841 MPL MPL proto-oncogene, thrombopoietin receptor 2 6
MIRT455969 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456805 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457320 DUSP19 dual specificity phosphatase 19 2 2
MIRT457366 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457684 ZNF587 zinc finger protein 587 2 2
MIRT458158 LYRM4 LYR motif containing 4 2 6
MIRT458641 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT459134 FADS6 fatty acid desaturase 6 2 2
MIRT459153 NARF nuclear prelamin A recognition factor 2 4
MIRT460460 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460974 STK17B serine/threonine kinase 17b 2 2
MIRT461439 ACSBG1 acyl-CoA synthetase bubblegum family member 1 2 2
MIRT461507 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT462490 GSR glutathione-disulfide reductase 2 2
MIRT462638 PHF5A PHD finger protein 5A 2 2
MIRT463279 ZFX zinc finger protein, X-linked 2 2
MIRT463360 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT465777 TMOD3 tropomodulin 3 2 2
MIRT466143 TMEM120B transmembrane protein 120B 2 2
MIRT468401 SETD3 SET domain containing 3 2 2
MIRT468998 RNPS1 RNA binding protein with serine rich domain 1 2 2
MIRT471574 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT472108 NME2 NME/NM23 nucleoside diphosphate kinase 2 2 2
MIRT472125 NME1-NME2 NME1-NME2 readthrough 2 2
MIRT473020 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT473083 MORN4 MORN repeat containing 4 2 2
MIRT475598 HMGB2 high mobility group box 2 2 4
MIRT475937 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476117 GPR157 G protein-coupled receptor 157 2 2
MIRT476406 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT478003 DNAL1 dynein axonemal light chain 1 2 2
MIRT487969 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489418 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491522 IL10RA interleukin 10 receptor subunit alpha 2 2
MIRT492673 PLEC plectin 2 2
MIRT493545 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT513085 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT514009 CECR2 CECR2, histone acetyl-lysine reader 2 4
MIRT516683 ZNF860 zinc finger protein 860 2 2
MIRT518392 ZNF250 zinc finger protein 250 2 2
MIRT522683 LUZP1 leucine zipper protein 1 2 6
MIRT524488 CEP97 centrosomal protein 97 2 2
MIRT527457 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT527705 IL17REL interleukin 17 receptor E like 2 2
MIRT531647 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT532381 UMPS uridine monophosphate synthetase 2 2
MIRT532588 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT533555 TPM4 tropomyosin 4 2 2
MIRT548371 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 2 4
MIRT550250 PVR poliovirus receptor 2 2
MIRT552555 ZFP36L2 ZFP36 ring finger protein like 2 2 4
MIRT554113 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 2 2
MIRT554131 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT561344 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT561638 RUNX3 runt related transcription factor 3 2 2
MIRT566497 PBX2P1 PBX homeobox 2 pseudogene 1 2 2
MIRT570583 OTUD7B OTU deubiquitinase 7B 2 2
MIRT572731 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT574041 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT575231 Fut1 fucosyltransferase 1 2 2
MIRT606811 BICD2 BICD cargo adaptor 2 2 2
MIRT621016 CLSTN3 calsyntenin 3 2 2
MIRT637852 PDCL3 phosducin like 3 2 2
MIRT640477 ZNF557 zinc finger protein 557 2 2
MIRT642827 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT643887 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT664874 PCNXL2 pecanex homolog 2 2 2
MIRT680528 PRIM2 DNA primase subunit 2 2 2
MIRT680648 KIAA1456 KIAA1456 2 2
MIRT680807 ZNF578 zinc finger protein 578 2 2
MIRT680921 STX2 syntaxin 2 2 2
MIRT681112 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT681147 INTS7 integrator complex subunit 7 2 2
MIRT681966 TFCP2 transcription factor CP2 2 2
MIRT684316 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT684906 GSG2 histone H3 associated protein kinase 2 2
MIRT685499 MED16 mediator complex subunit 16 2 2
MIRT685929 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686875 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688204 FNIP1 folliculin interacting protein 1 2 2
MIRT688791 CCNB1 cyclin B1 2 2
MIRT689227 RPS19 ribosomal protein S19 2 2
MIRT690470 ZNF33A zinc finger protein 33A 2 2
MIRT691982 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT694006 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694529 TRIM72 tripartite motif containing 72 2 2
MIRT695420 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT695784 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT697799 UBXN2A UBX domain protein 2A 2 2
MIRT698275 TMEM2 transmembrane protein 2 2 2
MIRT698317 TMEM136 transmembrane protein 136 2 2
MIRT699971 RREB1 ras responsive element binding protein 1 2 2
MIRT700717 PNO1 partner of NOB1 homolog 2 2
MIRT701721 MTMR12 myotubularin related protein 12 2 2
MIRT701879 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT702959 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT706178 ZNF716 zinc finger protein 716 2 2
MIRT706463 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT718154 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT718711 ANKRD18A ankyrin repeat domain 18A 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3160-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3160-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3160-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-3160-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3160-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

Error report submission