pre-miRNA Information | |
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pre-miRNA | hsa-mir-4666a |
Genomic Coordinates | chr1: 228462074 - 228462152 |
Description | Homo sapiens miR-4666a stem-loop |
Comment | None |
RNA Secondary Structure |
Mature miRNA Information | ||||||||||||||||||||||||||||
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Mature miRNA | hsa-miR-4666a-5p | |||||||||||||||||||||||||||
Sequence | 10| AUACAUGUCAGAUUGUAUGCC |30 | |||||||||||||||||||||||||||
Evidence | Experimental | |||||||||||||||||||||||||||
Experiments | Illumina | |||||||||||||||||||||||||||
SNPs in miRNA |
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Putative Targets |
Gene Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Gene Symbol | TNRC6C | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synonyms | - | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | trinucleotide repeat containing 6C | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Transcript | NM_001142640 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Other Transcripts | NM_018996 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Expression | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Putative miRNA Targets on TNRC6C | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3'UTR of TNRC6C (miRNA target sites are highlighted) |
>TNRC6C|NM_001142640|3'UTR 1 GCTCTGCCATCATCAGCACCAGGAGAGCCGACCCCTCCCGGGACCCCTCCCGGCTGGGCGGCCCCACAGACCCGCTGGAA 81 CCCAGCAGCGGCCGCCCTTTTGAGTACCTCTGTCCAGGACTGAAGACGAACCTTGGCCGCAGTCCTTGCGAACTGTTCGC 161 AAAACAGTGCGGGCTGCGGTGGGTCAGCGTCACATGCTAATGACAGGATGTTCCTCGTAGCTTTTTATTTTGTGCGTCTT 241 ATGTTTGTATAGTGTGTTGTCATTTTGATTTTTTTTTTTTTTTTAAGTATAAAAGCTGCTTAGAATAGTTCTATCATGAA 321 GGGCACTTTTCAGATTGTGGGCTGGAAAGGGTTATTTTATCTGTGGGGGAGGGAGGGAGACGTGAAGCCTATTTAAAATG 401 AGCCTGTGACGATTATGCACATGACCAGAGGCGGCCGGTAATCAGGGCAGAGTCTGGTGTGGACCGCCGGGCGCAGAGCG 481 GCTCCGCGGCGGGAGCTGAGCGGAAGGCGCGGGCTGCGATCTGCTCTCTGTTCCCCTGGATCCGCCTATGCACATTACCC 561 TTGTTTCATTACTTTTTCATGTCATTTTTTTATCCCAAAAAATATTTTTTAAAAGTTAAAAAAAGACATATCAAACATGC 641 AAATACTTGAATCCAGCAGGCCAATAGTGAAATGTGAACACTTTCTAATTCTACACTTCCAGGTTGACATCAGTACACAG 721 AAACAGGCTCTAGGAAAAATTTCTAAGTTCATAGCCTACGTGTGTGTATGTGTGCGTGTTGAAACAGAAGTGTGTGTGTG 801 TGTGCATGTGTGGCGCGTGCTCCTGCACGGCGTGCAGTTTTCTGTGTTTGTGTGTTTGAAAGCGTGTGAGGATTTAACTG 881 TGGGTTTTCCCTTGTATTCAGTATACGCTTTTTTTTTGGCGCATTGGTCAAACGGTTGTTATTATTAGCTTCTAACTTTG 961 CACTGAGTGTCCTCGCCCTTCCTTTAGCTAATCCTATACATTACAGAGAATTCCTAGGACAGGGCTGGCGACAATTCATG 1041 TGTAAATGTTTACTCAAGGACTCTGTGACTGCGTTTAAAAAGTACAGTGTATATCTCTGGAGAAATAACATGTATACCTA 1121 CCTTTAGCAGCTTTTTATTGTGGACTAATGCAAGAAAATTATTACCAGAGTATTGCACCATTTTTCCATTTGGAATATAA 1201 AGTTAAAGAGAAAAAAAAAAAAAACTGTTGTTGAACTGTGGCCATAGATACTTGTAAAGAATGGATGGTTCCGTGGAAGG 1281 AACAGAAACAAGCACTTGGGCGTGGGTTGTGACTGCTTTTGGGGGAGCCTGGGGTTTGGGCTCCCACCTGTTTACAGACC 1361 TTTTTTTCTCCTTCAGACTTTAAAATTTTAAAAATTTAAAAAGGAATTAAAAAAAAAAAAAGACTTCCGTCGTAAAGAAA 1441 CCTATTTTCAGAATGCAGATGCGTTCCTTCAGAGCTCTGGGACGGGACAGTGTTGTTCCCTCGGCCATCGTCGTGGACTC 1521 TGTCGATTGCTTTCGCCCCTTCGTCAAGGTGACAGGCGTTGTGGCCACTGTCTTGCACATGCCGGACGCGCTCTCAGGAA 1601 AGCCAGGGCTCCCGAGGGCAGCTCCACACCATTTCATGTATTTTTAAACCCAACTCCTAGCACTGAAGATGTTATTTAAA 1681 AAAAAAAAAAACAAAACAAAACAAAAAAATGAAAAAAAAGAAAAAGAGGAAAAAAAAACACAAAGAAGAAAAATACCTAA 1761 TCTCTAATGTGTAGCAGTTACATATTTACCAAATAATGGACTCAAAAGAAATAGATGTTTGAAGAGTGCTTTATATATTA 1841 AAAATTGCTTTATGTTTTAAAAATGATCAATGTTTTGATTGTTTTGCAAGGAAGAAAGACAATGGAATAACATACCTTCA 1921 AGTATGTTTTAAAAAATATATATATGAACATTGTGCTCCCTGCCTGCTTGATCAGGAAACTTGTGCATTACATTTTTTTA 2001 ATTAGCTTTTTAATGGTTTTATCAAAACAAAAAAAATACAAAAAAAAAAAAAAAAGTCCTGCAAGACTGCAGATCCACAA 2081 AAGCTGGTTTTATAGAGGATCATGAACTATGCACAAACTGGGTTCAAGACTTTTTTTCTCAAGTTTAGTAGGATATTTAG 2161 AAAAACCAACCTTCCTCAGAGTGACTGCATCTCATTGCCATTACATGCGTTCTATATATTCGATGGACATACACCTGCGT 2241 ATGTATATCCAATATGTGTGCGTGTGAGCATGCGTGTGCGTATGTGCGTCCGACATACCACTTCCCGTGCTGCCGGCGAG 2321 CATTGAGTTGTAGAAAAACTGTTGTTTTAAAATTGGGGATGGAAGTCAAGAATATGTTTGTTTGTTTTTGGGTTTTGTTG 2401 GGTTTGAGGGGTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTACCTTTTATTTTGAACTTAATATGTCTGTAACTCTGAGA 2481 TTAAACAACAAGTTCGTGGCTCTTAATGTTTTCCTCATAGAATGTGACTGTTGAAGAACATGCATCGAAAGTTGCTTTCG 2561 AAAGTACAACGCTTTATTGAATCTTAATAAATTGCAATTTTTTTCTTGGCTGTTCAAAGTAATGTGTTTTTCATTTTTCA 2641 AAAGACACTATGGATGTCTACTTTGCACGCTGCGATTGGGAGAGCTGTCCCGCTGCATGCGTTCCCTCTGTAATTTCCTC 2721 AGAGCTCACATACGTACCTCTCTCACGAGTGAACTCAGATTTTCCATTGTTTTGCTTTATTCTATCATTTGCTTTGTGGT 2801 TTTGCTGTAAATATTGAAATCTTAATCATCATCGAGAGGCACAGCCAAGCTTTCCAGCTCTCCACCCCCGTGGCCCATCC 2881 AAGTCTGTTCATCTGGTAACTTCTGTTGTCTGGGACGGCAGCAAGAAGATGCCGGGGCTTGCCTGGAGTCCTGGCAGAGG 2961 AGTGCCACTCACTTTTGCCTAGGGTCCAGTTGGGGCTTAAAAAATATTTGGAGAGAAGAGTAATGAGGATTTTTTGTGTT 3041 TCCTAGACATTTTATGCATCTATTTTTGTAAAATCACCTTCGCTAACTTTCACCAAGCACTTTGAGCACAGTGGAACTTC 3121 AGAAGCACAACCAGCCTAACCCCAGAATCTCAGGTGGCACAGCTAGAAATTGAGTCCCTTCCTAGGACACTGGCCGTGGC 3201 CTTCAGGGTGACCAGTCAGTGCCACCGGGTTGGCATTGGTGTTACAGACAGGCCTCTGAAGACAAACCGAGCACCCCAGC 3281 GGCCCCTCAAACTAAGCAAGGATCTTTTTTCTGTCTGCGCTCCCTGGGGCAAGGTCAAAGGTGGACCCGCCCACTGTGGG 3361 TCAATTCCTTCGAAAAGATGGGACCCGCACCCCCGCCACAGGCTGGCCCCCCCCCACCCATGGGGAAGGTGGTGTGCTGC 3441 TGGCTCTGACCATACTCTTTTGGAAATTGAGAAGGAAAGCATTGAGTGGGACCTAATCCGGAGAAGAAATTAAAGACCAG 3521 AAAAAGAAGGAAGCTGGGAATGAAACTCAAAATGCACTTGAACCTGGAAGCGGCAACCCTCAGCTCTGCGCGGCCGAGCC 3601 TCAGCAAGAGTTCGTTTTGTGCCTGAGTTACTACTACAGGGGCAAACTGTACCCGTGCCTGTGCGCTGGGAGAACAAGGT 3681 CAGCGCCCAAGGGTGTGCAAAGGATGTGGCAGGCTTCATGGAGGAGGTGGCATTTGCCCTGGGCCTGGGAGACCAGGTTG 3761 GATTTTGACAGACTGGGAACTCGGGGGACAGGAGGGCAGCACAGTGTAAGCTAAAGCCCTGTGTAGGGACCCCACGCAAA 3841 GACCTCGTGGGCCTGGGTGTCCAGGGCACCATTTCCACCCATGGGTGAAAAAGAGGCTTGAGGAAGACAACAGGTTCTTC 3921 ACCTGCATCTGTGGATATATATTTTTTTAAGTTTATTAAATTTTTTTTTAAATGGCAGTTTCAGACCTGCAAAAAAAAAA 4001 AAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs |
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SNPs in gene 3'UTRs |
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