miRTarBase - #MIRT079440


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pre-miRNA Information
pre-miRNA hsa-mir-3607   
Genomic Coordinates chr5: 86620497 - 86620575
Description Homo sapiens miR-3607 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3607-3p
Sequence 51| ACUGUAAACGCUUUCUGAUG |70
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FOXK2   
Synonyms ILF, ILF-1, ILF1
Description forkhead box K2
Transcript NM_004514   
Expression
Putative miRNA Targets on FOXK2
3'UTR of FOXK2
(miRNA target sites are highlighted)		 
>FOXK2|NM_004514|3'UTR
   1 CGACCGGGAGAGCTTTTCTTTAACGATATCAACTCTGTGGTGCCAAAAGGAGACGCGGCCTCCCGCCAGCACTCGGGGGT
  81 GCAGGGCCCTGTGGTTGGACTTCACCTCTCAGCACTGAAAACCCAAAACCCAGCTGGCCTTAACACTCCTTAAAGACAGA
 161 AGTCACACTTGAACAAAACCCACACACAACAAAACCTGATTTGGGAGACGGTGTCTCCACTGAGCACCTGCTGGGCTGAG
 241 CTTCTACCTACGAGTGAAACTCTGTCCTCCCGCGAGGACCAGGCATCGCTGTGTGAGGACGGCACGGCCAGCGCCTGCTG
 321 TGAGTGGGTCTCCCAAGACTAGGCCTCAGGACGCGGGGGGAGCCATCCCCGCCGCCCTCACAGGACCCACCAGGCAGCGG
 401 AGACATGTGGAATTAGAGTATTTTGAGGTGTCCTTTCTTTACAAAATAATGGGGTCTTGGGCATTTCACATCACTCCATT
 481 TCTACTGAGACTTTCAGAATCACACAGGCCCTTTCCGTGGATTTCATTTGGGGCAAAGAAACAACGTAGTTTTGTTTTTG
 561 TTTTCAGCCTATGGAATGATTTCCTTTTGTCTGTCTTGTTCAAGTTCAGACGAAGCTACTCTGGCATCTGCACATTTCCG
 641 TGTTACAGCAGCTGCCTGATGAATTTTATCCACCTCCATTTCAGCATGTGGCTCGCGTGGACAGGTGGACGGACGCTGTG
 721 GCCGCATGGAACCTTGAGAACCCAGGGACGAGCCAGTGCCGGGAAGGAACTGCCGGGACTCACCGAGCTGCACTTAACTG
 801 TTCTCTTTCTGGCTATTTTTTGTTGTTTGTTTCTTTGTGTTGACTTTGTCCCTGGCAAAATTTTCCACTCTGAGTAAAAC
 881 AAGTCTCCTAAGTATTGTGTATGTTTAAAACGACAGAACCATTTCTACTTCATTTGGAAAAAGATTCAGTCTTTTATCAC
 961 AGGCCCTTTTGAAACTCAGATCCCAGGTCTCTCCGTGGTATGTTTGTATTTGGGGTGTCCCTCCGGCTCTAGGCGGCCTC
1041 TGACCTGCTGTCTACTCCCCACCTTCGGTGAGCGGCCGCCATGGTGGAGCAGGGTCCGAGCCACGTCCTGCAGGGCACGT
1121 CTGGGGCATTTCCTGTTTTGTGGTAGGAAATGTCCCTGACCTTTCAGAACCGAACCCAATCCTGAGGCTGACTCCTCTAC
1201 GGAAAATGAGGACAGGACGGGGGTGAGGGAATGAGAGTGGGAGGTCCCTGCACCTCCTCGCCCGGCTCCTCAGGAAGAAA
1281 ACCGCTGGCCCTTCCCGAGTGTGCCGGCCGAGGGCCGAGGGCCGTGCACATGGGGAGAGGGCGTCAGCCTGATGGCTGAG
1361 CTTTTAAATGTCATCATCATAACATTATTTATTTAAATGTAGTTATTTTGGTATTTAATTTTTTTTTAGAGAGGAAAAAA
1441 CCTGTATTTTCCTGGTGGGATGAAATAGGGATGAAATGGCTCAGAATGGTATATTTAGGCAATTTTAAAACATTTATTAT
1521 TTACATAAAGACCAAATATGATGAATCTGTTCCGTGAATTGTGTCGGCCCTCAGCATGGGGCTGGGGCAGCGTCACTGCG
1601 GTGACGCCCATTGAAAGGTATGAAATGACTGCACACTAGCTGGATTATCACTCAGCCGTTTAAGAAATAAAAGCAAAACC
1681 ATCACGTGACTGAGACCGTGTGTGTGACCGCAGCAAAGCGCAGCGTGTGGATGGATCAGAGCCCCTCGGTGCAGCTGTCT
1761 GCATCTTCCAAGCACTTTACAGATACCTTGGAATGTATATTTTTGTCTTCTTACTCAGAAGGTTTGCAGTTTGTAAAATA
1841 ATCAGGATTCTGCTCTGTCCTGTGTGTGGGGTCAGCTCCCTCCACAGAGGGCTCCAGCTCTGTTGGTCACAGCTGATGGG
1921 GTTCTCTGATTGATAGGAGACGAGCTCTTGAGCTCTAAGGAACAGTGAGGTCGCCGGTGGGGAGCTTGGCTGGGACACCA
2001 AGCAAATGCATCGTATGTCCCCTTGGAGACGTTTTTATGCAGCTGTGTATGTTACTATCCAGAAGGAGTCGGGGGTAGAC
2081 TTTCCCGTGTAAGCTCAGTCCATAAACTGGTTACTTCTGATCCTGGAACGTGGACTTCACATGATAGGTCTGGATCTGTT
2161 TCTGTTGGGATCACAGGTAAGGAAAATGTCCATTCAAATGGTAAAGAAGGGAGGAGGGTGTTTTTTTTTTTTTTTTTTGC
2241 CGTAGGCACCATTCTGCATCTTGAACCCAGACTGAAGTGTGCCTCTCACAGATGGAAGGTGCACACGCTCCTGTCTCCTC
2321 CTCACTCTGCCACGTTCACTTGGCTTTTTCATTGGTACCTAGGAATTTAAGAATATCGAAGCGAGAGCAGTAACAAACCA
2401 TAGATGAGCAGACTCCCACACCGGGTTTTCTTGCCCGTCTTTAAGGCACTGTTTCTAAATTTTGAACTTAGCTCTGAATC
2481 CCCAAGAACTTGAGCACAGCAAGGGTTGCTGAGCTGCTGTCGCCGCAGCCCTGGCCCCTGGTGCTGGAGCTGCAGCACCT
2561 TTGGGAGAGGTCCTGCGTCGTCCTCAGCTGCGTCGCTGTGAACTCCCGCTCTCCACTGTGTTCCTCAGTGTCTGCTTTTC
2641 AGGAAGTCTGCTGTGACCTTTGCCCAACTTCTGAGCTCCTCAGGGACTAGGAACAATTTCAGTAGCTTTGCCCTGAACCA
2721 AACGAGAAAACAAAAGGGAACTCCCGTATGACCCACGTCACGTGGTGCACTCAGAGTGTGTGCGGCATGATCCTCGGTTG
2801 CTCCTCCTCTCACTTTAGTAGAGTACGCGGTGGACAGCTGATCTCCTTCAGTCGTCTACCCACTTCCGTCATTGTCCTCC
2881 GCTAGAATAACAGAGTAGTTGGTAGTCATGGCCAGAAGGGGGGTGGGGGCAGTGTGAGGACTTGGGGTTTCTGTGCTGTG
2961 TGACACAAGGAGATAAGTGACAATCTTGAAGTCCTAACTTCCACTATTCTAGAAAGTATAGTGGTGATTTGTGTGCAAAG
3041 ATTTGAAGTTTTAAAAAAGTACCAAGTTCCTGAAATTCAATAAAATATTTTTATTAATTTTAATGGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guAGUCUUUCGCAAAUGUCa 5'
            ||||||:  ||||:||| 
Target 5' acTCAGAAG--GTTTGCAGt 3'
 1813 - 1830 150.00 -15.80
2 
miRNA  3' guagucuUUCG-CAAAUGUCa 5'
                 ||||  ||||||| 
Target 5' atcttccAAGCACTTTACAGa 3'
 1763 - 1783 149.00 -7.80
3 
miRNA  3' guagucuuucgcaAAUGUCa 5'
                       |||||| 
Target 5' gcacatttccgtgTTACAGc 3'
 630 - 649 120.00 -8.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26976663 5 COSMIC
COSN31610684 6 COSMIC
COSN26976664 26 COSMIC
COSN30542137 55 COSMIC
COSN30727223 56 COSMIC
COSN31958033 57 COSMIC
COSN30744366 66 COSMIC
COSN30104941 68 COSMIC
COSN24306157 168 COSMIC
COSN16131251 218 COSMIC
COSN7457320 399 COSMIC
COSN16131296 433 COSMIC
COSN21305075 479 COSMIC
COSN7457321 789 COSMIC
COSN7457322 926 COSMIC
COSN31485299 1311 COSMIC
COSN29773528 1428 COSMIC
COSN30543810 1469 COSMIC
COSN30539207 1485 COSMIC
COSN29404960 1539 COSMIC
COSN17467507 1686 COSMIC
COSN21511288 1817 COSMIC
COSN20093395 1896 COSMIC
COSN20093396 2014 COSMIC
COSN17183244 2046 COSMIC
COSN27294726 2236 COSMIC
COSN20114535 2237 COSMIC
COSN29636524 2548 COSMIC
COSN32065243 2556 COSMIC
COSN19417309 2692 COSMIC
COSN31961394 2724 COSMIC
COSN28643573 2797 COSMIC
COSN28707538 2845 COSMIC
COSN28706242 2846 COSMIC
COSN31592830 2862 COSMIC
COSN26647788 2869 COSMIC
COSN31541316 2970 COSMIC
COSN30008220 3094 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs975972200 2 dbSNP
rs780334494 3 dbSNP
rs931088204 4 dbSNP
rs184940854 6 dbSNP
rs768711994 7 dbSNP
rs889481059 11 dbSNP
rs1156364942 13 dbSNP
rs774465946 14 dbSNP
rs1007127665 22 dbSNP
rs547879686 25 dbSNP
rs369200935 26 dbSNP
rs761242202 27 dbSNP
rs1049813251 31 dbSNP
rs1285724279 32 dbSNP
rs1332236743 33 dbSNP
rs1238413899 34 dbSNP
rs766858659 35 dbSNP
rs1352954187 36 dbSNP
rs777065904 39 dbSNP
rs1010825015 40 dbSNP
rs1291358530 43 dbSNP
rs761381326 51 dbSNP
rs762456803 52 dbSNP
rs1381289266 53 dbSNP
rs1020492229 55 dbSNP
rs1456721465 57 dbSNP
rs1237735101 58 dbSNP
rs889852255 60 dbSNP
rs968766712 62 dbSNP
rs978845373 63 dbSNP
rs189785327 65 dbSNP
rs1166272082 67 dbSNP
rs1358588667 71 dbSNP
rs180985046 75 dbSNP
rs1355606693 76 dbSNP
rs1374398002 78 dbSNP
rs1469392109 80 dbSNP
rs771769691 84 dbSNP
rs1278573610 85 dbSNP
rs570341778 88 dbSNP
rs868665797 89 dbSNP
rs1351083770 91 dbSNP
rs1321064571 94 dbSNP
rs917834081 98 dbSNP
rs767274684 108 dbSNP
rs1010454426 124 dbSNP
rs1361689122 140 dbSNP
rs949206106 146 dbSNP
rs779657233 147 dbSNP
rs1380147548 158 dbSNP
rs111902444 163 dbSNP
rs1479158733 167 dbSNP
rs879211507 180 dbSNP
rs559533646 190 dbSNP
rs1286573614 197 dbSNP
rs931035671 197 dbSNP
rs1034046622 202 dbSNP
rs1351224466 206 dbSNP
rs1283343670 208 dbSNP
rs1048192941 210 dbSNP
rs951879517 211 dbSNP
rs1403732362 212 dbSNP
rs528464541 218 dbSNP
rs1300584103 222 dbSNP
rs1014668949 229 dbSNP
rs961859222 232 dbSNP
rs1418453162 241 dbSNP
rs1041262470 243 dbSNP
rs1177182848 244 dbSNP
rs1416552649 246 dbSNP
rs1423250253 248 dbSNP
rs1190838888 249 dbSNP
rs1275089406 249 dbSNP
rs1318466112 250 dbSNP
rs901420716 252 dbSNP
rs139538611 253 dbSNP
rs1241467230 260 dbSNP
rs142616980 260 dbSNP
rs1260730278 262 dbSNP
rs568275623 263 dbSNP
rs923211420 265 dbSNP
rs34611296 272 dbSNP
rs1187903758 273 dbSNP
rs1222596449 275 dbSNP
rs368403780 288 dbSNP
rs1279598431 289 dbSNP
rs985854388 299 dbSNP
rs911262554 300 dbSNP
rs936081640 301 dbSNP
rs547409117 302 dbSNP
rs913369836 306 dbSNP
rs946211385 307 dbSNP
rs1045953932 313 dbSNP
rs907434276 314 dbSNP
rs78435800 322 dbSNP
rs1168560376 325 dbSNP
rs1428028518 331 dbSNP
rs952539657 336 dbSNP
rs878991207 341 dbSNP
rs1470341559 343 dbSNP
rs1055863667 353 dbSNP
rs1317971826 354 dbSNP
rs1202618328 355 dbSNP
rs149691901 355 dbSNP
rs1005892153 356 dbSNP
rs1428431556 359 dbSNP
rs145353578 364 dbSNP
rs942466592 370 dbSNP
rs112887170 371 dbSNP
rs1336537831 372 dbSNP
rs922321658 374 dbSNP
rs544828112 375 dbSNP
rs556670746 376 dbSNP
rs1461494262 380 dbSNP
rs1369197538 390 dbSNP
rs773479256 392 dbSNP
rs762202489 394 dbSNP
rs1383332538 395 dbSNP
rs1182711182 397 dbSNP
rs763103127 399 dbSNP
rs986104789 400 dbSNP
rs1239560718 403 dbSNP
rs904670761 405 dbSNP
rs1325143797 407 dbSNP
rs1000327211 410 dbSNP
rs1200515743 414 dbSNP
rs749231568 415 dbSNP
rs894560630 415 dbSNP
rs529907440 421 dbSNP
rs957403651 422 dbSNP
rs867901281 431 dbSNP
rs1379591963 438 dbSNP
rs1217433671 445 dbSNP
rs1391520373 451 dbSNP
rs766451285 453 dbSNP
rs990205889 455 dbSNP
rs185408813 457 dbSNP
rs1456486788 459 dbSNP
rs751554311 460 dbSNP
rs542500646 461 dbSNP
rs189721796 469 dbSNP
rs962091077 470 dbSNP
rs1281135154 473 dbSNP
rs1179181773 488 dbSNP
rs200152237 500 dbSNP
rs1267636726 502 dbSNP
rs376524125 503 dbSNP
rs181946069 504 dbSNP
rs1291616482 506 dbSNP
rs1218059841 509 dbSNP
rs1356258994 510 dbSNP
rs1480832445 512 dbSNP
rs994464001 513 dbSNP
rs796502309 517 dbSNP
rs946140923 518 dbSNP
rs1045923303 521 dbSNP
rs1303687778 528 dbSNP
rs1402680664 529 dbSNP
rs1302470890 530 dbSNP
rs1420269394 534 dbSNP
rs1362191542 543 dbSNP
rs1156539244 546 dbSNP
rs928856204 556 dbSNP
rs768541102 557 dbSNP
rs1479162509 558 dbSNP
rs937547633 566 dbSNP
rs1195005754 583 dbSNP
rs952486625 584 dbSNP
rs1260302465 590 dbSNP
rs983954302 593 dbSNP
rs1346171686 595 dbSNP
rs1056058485 596 dbSNP
rs1257974995 598 dbSNP
rs887411646 603 dbSNP
rs1322868938 609 dbSNP
rs1005859613 612 dbSNP
rs1360930649 613 dbSNP
rs549567113 621 dbSNP
rs563856361 623 dbSNP
rs1223195116 626 dbSNP
rs1316134915 639 dbSNP
rs1381384327 640 dbSNP
rs760112646 641 dbSNP
rs3198629 649 dbSNP
rs1301273516 650 dbSNP
rs1428193986 671 dbSNP
rs531267686 679 dbSNP
rs767960287 687 dbSNP
rs1036012069 689 dbSNP
rs753219729 694 dbSNP
rs997255035 695 dbSNP
rs549571347 696 dbSNP
rs953243451 697 dbSNP
rs1041917728 701 dbSNP
rs1007858097 704 dbSNP
rs936296564 711 dbSNP
rs1032275762 712 dbSNP
rs894675104 715 dbSNP
rs568246085 716 dbSNP
rs1490305045 724 dbSNP
rs1045832481 725 dbSNP
rs957335891 727 dbSNP
rs1340822400 728 dbSNP
rs897787955 729 dbSNP
rs1452724612 737 dbSNP
rs1331631479 743 dbSNP
rs529205464 746 dbSNP
rs913268423 747 dbSNP
rs1037732651 750 dbSNP
rs967451041 751 dbSNP
rs547645676 754 dbSNP
rs981525060 755 dbSNP
rs1159546622 757 dbSNP
rs1370721880 760 dbSNP
rs1384825533 761 dbSNP
rs565806201 762 dbSNP
rs1161481850 766 dbSNP
rs534199320 769 dbSNP
rs1200819395 771 dbSNP
rs558950144 775 dbSNP
rs1387294568 776 dbSNP
rs570961043 782 dbSNP
rs1210533597 783 dbSNP
rs1356914670 786 dbSNP
rs1328023459 791 dbSNP
rs1317080202 794 dbSNP
rs756616216 796 dbSNP
rs1381839353 804 dbSNP
rs1443722051 814 dbSNP
rs765727615 816 dbSNP
rs1443971423 820 dbSNP
rs569469187 823 dbSNP
rs963930636 823 dbSNP
rs55831128 829 dbSNP
rs11558343 830 dbSNP
rs1393433655 832 dbSNP
rs1309593130 834 dbSNP
rs1381392402 834 dbSNP
rs1358245795 838 dbSNP
rs976878848 840 dbSNP
rs1199586584 845 dbSNP
rs1453413943 849 dbSNP
rs1243271519 856 dbSNP
rs1294426304 867 dbSNP
rs909447751 872 dbSNP
rs1357421923 890 dbSNP
rs1358420375 900 dbSNP
rs1029421252 901 dbSNP
rs942317075 907 dbSNP
rs867948261 912 dbSNP
rs1035979467 913 dbSNP
rs538338503 915 dbSNP
rs1271495584 921 dbSNP
rs1439686727 923 dbSNP
rs897534730 927 dbSNP
rs977053188 928 dbSNP
rs1346911855 930 dbSNP
rs1242571346 932 dbSNP
rs118072068 933 dbSNP
rs758081138 935 dbSNP
rs1399325756 938 dbSNP
rs1407454272 947 dbSNP
rs1173433452 950 dbSNP
rs1051532215 962 dbSNP
rs1266911191 963 dbSNP
rs888919606 966 dbSNP
rs1197158127 974 dbSNP
rs1007413212 976 dbSNP
rs1185590810 980 dbSNP
rs1032615685 988 dbSNP
rs1458218497 989 dbSNP
rs893718593 990 dbSNP
rs187193884 995 dbSNP
rs1394218683 996 dbSNP
rs950255584 998 dbSNP
rs1466767539 999 dbSNP
rs1020255758 1007 dbSNP
rs542188252 1016 dbSNP
rs1381340075 1025 dbSNP
rs897908489 1026 dbSNP
rs981904056 1028 dbSNP
rs1471104565 1034 dbSNP
rs1035796667 1035 dbSNP
rs1175755924 1036 dbSNP
rs1188273179 1045 dbSNP
rs765885282 1045 dbSNP
rs751100372 1046 dbSNP
rs8795 1047 dbSNP
rs1210360621 1048 dbSNP
rs1018218506 1053 dbSNP
rs1202421883 1055 dbSNP
rs899629887 1055 dbSNP
rs942284659 1056 dbSNP
rs1318070175 1057 dbSNP
rs1298366760 1059 dbSNP
rs1213365646 1061 dbSNP
rs1361668500 1063 dbSNP
rs1268976251 1067 dbSNP
rs972291600 1068 dbSNP
rs918892091 1069 dbSNP
rs1199769611 1071 dbSNP
rs1262606400 1074 dbSNP
rs933003362 1075 dbSNP
rs572371626 1078 dbSNP
rs1257110169 1079 dbSNP
rs977167834 1083 dbSNP
rs1032620363 1088 dbSNP
rs545405797 1092 dbSNP
rs957051517 1097 dbSNP
rs563695157 1098 dbSNP
rs943144430 1101 dbSNP
rs1201847901 1102 dbSNP
rs1307382572 1103 dbSNP
rs1053622140 1105 dbSNP
rs1291229914 1106 dbSNP
rs893644852 1107 dbSNP
rs916169720 1108 dbSNP
rs1381120882 1113 dbSNP
rs143920542 1118 dbSNP
rs1020895671 1119 dbSNP
rs4822 1120 dbSNP
rs1296476279 1122 dbSNP
rs1353797466 1123 dbSNP
rs1461573444 1123 dbSNP
rs28708773 1126 dbSNP
rs1426309865 1128 dbSNP
rs755851081 1129 dbSNP
rs929357975 1139 dbSNP
rs1049193489 1140 dbSNP
rs1419249066 1144 dbSNP
rs529105681 1151 dbSNP
rs943358795 1153 dbSNP
rs958811260 1155 dbSNP
rs992023147 1157 dbSNP
rs1225455761 1158 dbSNP
rs998545136 1162 dbSNP
rs1291570140 1167 dbSNP
rs769589686 1172 dbSNP
rs772923061 1173 dbSNP
rs1381268128 1180 dbSNP
rs1305138996 1196 dbSNP
rs1390876821 1200 dbSNP
rs763194756 1201 dbSNP
rs771093339 1202 dbSNP
rs1406745344 1204 dbSNP
rs1363659561 1206 dbSNP
rs903036466 1209 dbSNP
rs1454122362 1211 dbSNP
rs919530272 1215 dbSNP
rs955155467 1219 dbSNP
rs1283200592 1220 dbSNP
rs547239876 1228 dbSNP
rs77988312 1229 dbSNP
rs910248654 1232 dbSNP
rs1206023145 1233 dbSNP
rs1023089793 1235 dbSNP
rs971662124 1236 dbSNP
rs943092969 1237 dbSNP
rs533214639 1238 dbSNP
rs1285213660 1241 dbSNP
rs1053952091 1243 dbSNP
rs191763615 1244 dbSNP
rs570849533 1245 dbSNP
rs538377136 1249 dbSNP
rs984839796 1250 dbSNP
rs1386957517 1258 dbSNP
rs1203564274 1260 dbSNP
rs1042267910 1261 dbSNP
rs906434921 1264 dbSNP
rs1003905027 1265 dbSNP
rs1489108156 1268 dbSNP
rs1057130731 1269 dbSNP
rs1460280964 1274 dbSNP
rs894470016 1284 dbSNP
rs1429132606 1285 dbSNP
rs1012969763 1295 dbSNP
rs1430632728 1295 dbSNP
rs796291911 1297 dbSNP
rs923294202 1298 dbSNP
rs146870118 1306 dbSNP
rs902994610 1306 dbSNP
rs933903274 1306 dbSNP
rs998651956 1308 dbSNP
rs993609185 1310 dbSNP
rs1377651899 1311 dbSNP
rs140706459 1314 dbSNP
rs754203656 1317 dbSNP
rs1327960755 1323 dbSNP
rs775625239 1324 dbSNP
rs536062710 1325 dbSNP
rs910183555 1326 dbSNP
rs747005703 1331 dbSNP
rs1406270989 1332 dbSNP
rs757008277 1333 dbSNP
rs1022612335 1334 dbSNP
rs1168973871 1335 dbSNP
rs971489203 1335 dbSNP
rs111282007 1336 dbSNP
rs1344136157 1343 dbSNP
rs1371879366 1344 dbSNP
rs1003099513 1346 dbSNP
rs914975900 1348 dbSNP
rs1245181574 1350 dbSNP
rs950821815 1352 dbSNP
rs554033908 1355 dbSNP
rs1273866655 1359 dbSNP
rs1237154764 1362 dbSNP
rs909414075 1371 dbSNP
rs1355656888 1376 dbSNP
rs964776714 1383 dbSNP
rs1217037096 1384 dbSNP
rs1267872010 1385 dbSNP
rs1042236291 1387 dbSNP
rs1192796287 1395 dbSNP
rs927827825 1400 dbSNP
rs1328896930 1402 dbSNP
rs1411157789 1403 dbSNP
rs923270907 1404 dbSNP
rs939244524 1412 dbSNP
rs35013350 1415 dbSNP
rs1050989636 1419 dbSNP
rs1055459089 1419 dbSNP
rs557599468 1419 dbSNP
rs934613828 1424 dbSNP
rs1183999391 1428 dbSNP
rs894448178 1428 dbSNP
rs1013352956 1432 dbSNP
rs1037692344 1434 dbSNP
rs11368566 1435 dbSNP
rs1248313670 1441 dbSNP
rs1204395911 1442 dbSNP
rs948474773 1452 dbSNP
rs1049790648 1457 dbSNP
rs899244250 1468 dbSNP
rs993578473 1469 dbSNP
rs1443721839 1471 dbSNP
rs1026400197 1489 dbSNP
rs890625773 1490 dbSNP
rs1006506283 1492 dbSNP
rs1016423050 1495 dbSNP
rs1368032024 1495 dbSNP
rs572410534 1499 dbSNP
rs1389725702 1500 dbSNP
rs964891145 1507 dbSNP
rs1408913686 1508 dbSNP
rs1160574788 1509 dbSNP
rs1468663886 1510 dbSNP
rs879116569 1512 dbSNP
rs1363345956 1513 dbSNP
rs1311798127 1514 dbSNP
rs879230408 1518 dbSNP
rs1490481506 1520 dbSNP
rs1377884946 1525 dbSNP
rs1245461322 1527 dbSNP
rs1270965538 1531 dbSNP
rs974823451 1533 dbSNP
rs1450876914 1537 dbSNP
rs1284510095 1538 dbSNP
rs183611112 1554 dbSNP
rs145655699 1555 dbSNP
rs1287111330 1560 dbSNP
rs965012795 1562 dbSNP
rs989133700 1566 dbSNP
rs1022003119 1567 dbSNP
rs1436193145 1573 dbSNP
rs923974622 1578 dbSNP
rs1320508190 1580 dbSNP
rs966446895 1582 dbSNP
rs1265951012 1584 dbSNP
rs754503693 1592 dbSNP
rs914378341 1597 dbSNP
rs559781596 1600 dbSNP
rs1431328884 1601 dbSNP
rs939195060 1606 dbSNP
rs990730693 1607 dbSNP
rs1242541996 1611 dbSNP
rs1217708061 1614 dbSNP
rs1182533585 1617 dbSNP
rs916468259 1622 dbSNP
rs1267112018 1623 dbSNP
rs1203682576 1629 dbSNP
rs573221532 1629 dbSNP
rs1407431784 1631 dbSNP
rs1281927602 1632 dbSNP
rs542228451 1637 dbSNP
rs1219199970 1642 dbSNP
rs1047416128 1643 dbSNP
rs886128870 1658 dbSNP
rs1006452260 1659 dbSNP
rs1337703185 1660 dbSNP
rs1470993359 1661 dbSNP
rs1166182582 1662 dbSNP
rs543020621 1665 dbSNP
rs748016303 1665 dbSNP
rs1354439866 1666 dbSNP
rs1404048235 1669 dbSNP
rs561834746 1671 dbSNP
rs1173847680 1675 dbSNP
rs1333473887 1676 dbSNP
rs1420182997 1680 dbSNP
rs188114807 1680 dbSNP
rs1333805015 1681 dbSNP
rs541222723 1686 dbSNP
rs1183893031 1687 dbSNP
rs559583452 1689 dbSNP
rs1260649086 1691 dbSNP
rs756004696 1692 dbSNP
rs1308527283 1695 dbSNP
rs533305713 1698 dbSNP
rs978173420 1699 dbSNP
rs1213161234 1702 dbSNP
rs573955468 1710 dbSNP
rs151033563 1711 dbSNP
rs890603948 1720 dbSNP
rs958045276 1721 dbSNP
rs564501213 1726 dbSNP
rs914494099 1735 dbSNP
rs948705256 1741 dbSNP
rs1196623709 1743 dbSNP
rs980334241 1748 dbSNP
rs531753730 1750 dbSNP
rs1253647327 1757 dbSNP
rs749131943 1769 dbSNP
rs928514474 1776 dbSNP
rs1480706397 1779 dbSNP
rs1202709659 1783 dbSNP
rs938412436 1793 dbSNP
rs1341865560 1796 dbSNP
rs900742434 1797 dbSNP
rs564619434 1798 dbSNP
rs1474006134 1801 dbSNP
rs1182772163 1804 dbSNP
rs1419202337 1806 dbSNP
rs190019974 1809 dbSNP
rs1021930045 1814 dbSNP
rs1173373006 1817 dbSNP
rs760361407 1817 dbSNP
rs1401209230 1819 dbSNP
rs966375517 1820 dbSNP
rs1375705548 1824 dbSNP
rs1469343953 1829 dbSNP
rs1335033179 1830 dbSNP
rs1407975992 1840 dbSNP
rs977808120 1846 dbSNP
rs543064168 1847 dbSNP
rs960513148 1850 dbSNP
rs1361084047 1851 dbSNP
rs1303461000 1855 dbSNP
rs991050216 1861 dbSNP
rs1426332528 1867 dbSNP
rs1448982271 1868 dbSNP
rs866275852 1870 dbSNP
rs1163713980 1876 dbSNP
rs1419115922 1880 dbSNP
rs1303232323 1883 dbSNP
rs372700947 1883 dbSNP
rs941682526 1885 dbSNP
rs1482993916 1896 dbSNP
rs1270244922 1899 dbSNP
rs1360937643 1900 dbSNP
rs1216723759 1906 dbSNP
rs1280007790 1910 dbSNP
rs535534529 1916 dbSNP
rs941281540 1918 dbSNP
rs770682697 1922 dbSNP
rs1225116065 1927 dbSNP
rs1489979922 1927 dbSNP
rs774507222 1932 dbSNP
rs1037916515 1934 dbSNP
rs548019313 1935 dbSNP
rs890334911 1938 dbSNP
rs565929656 1940 dbSNP
rs1283912863 1942 dbSNP
rs539769365 1943 dbSNP
rs1047744398 1946 dbSNP
rs386799991 1949 dbSNP
rs879496393 1949 dbSNP
rs1051855 1950 dbSNP
rs67052715 1950 dbSNP
rs3794714 1951 dbSNP
rs1241898415 1956 dbSNP
rs1487510512 1964 dbSNP
rs775578267 1973 dbSNP
rs377165180 1974 dbSNP
rs900674334 1977 dbSNP
rs1202309794 1991 dbSNP
rs865826184 2011 dbSNP
rs1044015341 2013 dbSNP
rs902157835 2014 dbSNP
rs113481526 2019 dbSNP
rs761282683 2020 dbSNP
rs1339461825 2025 dbSNP
rs1034723313 2031 dbSNP
rs1324444558 2032 dbSNP
rs957992999 2038 dbSNP
rs1010860766 2043 dbSNP
rs1329293182 2046 dbSNP
rs1023669443 2048 dbSNP
rs1427300605 2060 dbSNP
rs537057972 2065 dbSNP
rs980066385 2069 dbSNP
rs928434235 2071 dbSNP
rs1344454826 2072 dbSNP
rs76610569 2075 dbSNP
rs1179182779 2084 dbSNP
rs1464941722 2084 dbSNP
rs1300014858 2087 dbSNP
rs182430011 2088 dbSNP
rs907626196 2090 dbSNP
rs540759853 2096 dbSNP
rs150206319 2111 dbSNP
rs962528962 2118 dbSNP
rs1198829485 2123 dbSNP
rs762333149 2130 dbSNP
rs138593217 2131 dbSNP
rs951327939 2134 dbSNP
rs1352025526 2139 dbSNP
rs1294907320 2142 dbSNP
rs1344138668 2142 dbSNP
rs983848892 2145 dbSNP
rs1433970887 2146 dbSNP
rs1383103814 2149 dbSNP
rs61742310 2156 dbSNP
rs1393803315 2163 dbSNP
rs944748553 2165 dbSNP
rs552023948 2167 dbSNP
rs545196177 2169 dbSNP
rs565784174 2178 dbSNP
rs563591550 2181 dbSNP
rs1463823626 2190 dbSNP
rs946885924 2194 dbSNP
rs186702319 2196 dbSNP
rs1043941896 2202 dbSNP
rs1245202468 2204 dbSNP
rs902756607 2212 dbSNP
rs1158266914 2213 dbSNP
rs999817781 2214 dbSNP
rs1202072539 2215 dbSNP
rs1417675134 2216 dbSNP
rs1196355802 2217 dbSNP
rs1483901432 2217 dbSNP
rs1052593370 2219 dbSNP
rs759052766 2219 dbSNP
rs760086092 2219 dbSNP
rs10615625 2221 dbSNP
rs1241976332 2221 dbSNP
rs1330117187 2221 dbSNP
rs1339406841 2221 dbSNP
rs1359628777 2221 dbSNP
rs1425699964 2221 dbSNP
rs372937188 2221 dbSNP
rs549493117 2221 dbSNP
rs764510185 2221 dbSNP
rs765599263 2221 dbSNP
rs776096376 2221 dbSNP
rs879234413 2221 dbSNP
rs1387303161 2222 dbSNP
rs1161750018 2224 dbSNP
rs1160266626 2225 dbSNP
rs1360875659 2226 dbSNP
rs893885819 2228 dbSNP
rs1010973542 2229 dbSNP
rs1321504528 2231 dbSNP
rs1249538435 2234 dbSNP
rs1332377629 2236 dbSNP
rs1204157918 2237 dbSNP
rs1490470511 2238 dbSNP
rs77886186 2238 dbSNP
rs1207747330 2239 dbSNP
rs1291535222 2239 dbSNP
rs1355235212 2239 dbSNP
rs1436545814 2240 dbSNP
rs1278636896 2241 dbSNP
rs3794713 2242 dbSNP
rs1024038115 2243 dbSNP
rs1287211012 2245 dbSNP
rs1405931306 2248 dbSNP
rs371704204 2250 dbSNP
rs1208646086 2252 dbSNP
rs529432614 2253 dbSNP
rs1404940792 2263 dbSNP
rs766736414 2264 dbSNP
rs1452299350 2265 dbSNP
rs547472760 2271 dbSNP
rs565805237 2276 dbSNP
rs1236389633 2280 dbSNP
rs752107924 2283 dbSNP
rs1056531880 2300 dbSNP
rs1181410409 2302 dbSNP
rs1480625928 2303 dbSNP
rs1248186449 2305 dbSNP
rs866001472 2307 dbSNP
rs548211651 2308 dbSNP
rs1035617191 2311 dbSNP
rs1012379606 2314 dbSNP
rs983279469 2315 dbSNP
rs1326551225 2321 dbSNP
rs1268021659 2326 dbSNP
rs61740618 2333 dbSNP
rs1405843709 2334 dbSNP
rs1370396727 2335 dbSNP
rs962456415 2338 dbSNP
rs1273406023 2345 dbSNP
rs1436217833 2351 dbSNP
rs995284902 2353 dbSNP
rs1455679576 2362 dbSNP
rs921568042 2363 dbSNP
rs1388055648 2369 dbSNP
rs1025466072 2374 dbSNP
rs766966728 2377 dbSNP
rs551516672 2378 dbSNP
rs13382 2379 dbSNP
rs935620056 2382 dbSNP
rs373348451 2383 dbSNP
rs986737167 2384 dbSNP
rs1203795151 2387 dbSNP
rs893999708 2388 dbSNP
rs1051848 2389 dbSNP
rs1195680725 2398 dbSNP
rs191103076 2400 dbSNP
rs1340545328 2401 dbSNP
rs1300064455 2410 dbSNP
rs1045168337 2411 dbSNP
rs966085906 2413 dbSNP
rs1364768435 2421 dbSNP
rs1337395847 2422 dbSNP
rs975209935 2423 dbSNP
rs1360812882 2424 dbSNP
rs921992934 2430 dbSNP
rs567136190 2433 dbSNP
rs1459141605 2437 dbSNP
rs1413671539 2438 dbSNP
rs946813923 2439 dbSNP
rs1170278676 2449 dbSNP
rs1447248673 2450 dbSNP
rs1003545912 2456 dbSNP
rs1043912386 2459 dbSNP
rs924148512 2460 dbSNP
rs184088718 2463 dbSNP
rs553126309 2465 dbSNP
rs1423069687 2466 dbSNP
rs147015481 2467 dbSNP
rs879108962 2470 dbSNP
rs1004829003 2471 dbSNP
rs1341650152 2474 dbSNP
rs896114906 2493 dbSNP
rs545234887 2496 dbSNP
rs1377122517 2509 dbSNP
rs1473094582 2511 dbSNP
rs1447139411 2513 dbSNP
rs1169794064 2518 dbSNP
rs947727319 2522 dbSNP
rs1044737221 2523 dbSNP
rs1369547606 2524 dbSNP
rs963222515 2525 dbSNP
rs973530412 2526 dbSNP
rs1410925343 2532 dbSNP
rs189019550 2536 dbSNP
rs777729709 2541 dbSNP
rs1254611239 2542 dbSNP
rs1336581679 2542 dbSNP
rs192971615 2550 dbSNP
rs1482971161 2551 dbSNP
rs995255337 2560 dbSNP
rs1292734452 2562 dbSNP
rs1224120827 2567 dbSNP
rs138221326 2576 dbSNP
rs911588206 2577 dbSNP
rs886953513 2578 dbSNP
rs1008533971 2580 dbSNP
rs1290204579 2581 dbSNP
rs1407764800 2584 dbSNP
rs542550692 2592 dbSNP
rs1293917136 2593 dbSNP
rs1019546397 2594 dbSNP
rs964330411 2595 dbSNP
rs974759344 2596 dbSNP
rs1412928433 2601 dbSNP
rs879145783 2605 dbSNP
rs915380934 2605 dbSNP
rs1258020406 2608 dbSNP
rs946912921 2609 dbSNP
rs1472456964 2612 dbSNP
rs116733586 2613 dbSNP
rs905272688 2615 dbSNP
rs968123919 2617 dbSNP
rs1265102345 2621 dbSNP
rs1216578669 2623 dbSNP
rs1331398584 2627 dbSNP
rs979517661 2631 dbSNP
rs1269914057 2638 dbSNP
rs529290464 2647 dbSNP
rs777539436 2651 dbSNP
rs1226444357 2658 dbSNP
rs1349825640 2659 dbSNP
rs1301630622 2660 dbSNP
rs1388307005 2661 dbSNP
rs1365032975 2666 dbSNP
rs939464768 2667 dbSNP
rs1260901923 2674 dbSNP
rs1435150048 2679 dbSNP
rs1390265118 2686 dbSNP
rs757060372 2688 dbSNP
rs540989708 2691 dbSNP
rs1170807799 2709 dbSNP
rs1376526259 2712 dbSNP
rs778714961 2714 dbSNP
rs1431861781 2715 dbSNP
rs118115744 2716 dbSNP
rs1189501734 2719 dbSNP
rs185209015 2724 dbSNP
rs188971401 2725 dbSNP
rs548893168 2727 dbSNP
rs1349791821 2728 dbSNP
rs994677575 2729 dbSNP
rs1029277789 2731 dbSNP
rs1235136597 2732 dbSNP
rs1310259034 2733 dbSNP
rs1300138489 2734 dbSNP
rs1435304137 2736 dbSNP
rs1366959189 2737 dbSNP
rs918160959 2739 dbSNP
rs1433730268 2742 dbSNP
rs1305184811 2746 dbSNP
rs1342970331 2746 dbSNP
rs1403523885 2746 dbSNP
rs386799992 2746 dbSNP
rs1464833915 2747 dbSNP
rs1377472789 2748 dbSNP
rs1169655173 2753 dbSNP
rs567419396 2753 dbSNP
rs948337543 2754 dbSNP
rs1044707556 2756 dbSNP
rs775828801 2757 dbSNP
rs1256793923 2758 dbSNP
rs931030105 2762 dbSNP
rs953144942 2763 dbSNP
rs1343784540 2768 dbSNP
rs1295023162 2773 dbSNP
rs1226057298 2774 dbSNP
rs987649163 2776 dbSNP
rs1315413106 2777 dbSNP
rs1046811387 2778 dbSNP
rs886919273 2780 dbSNP
rs1402120645 2782 dbSNP
rs540039546 2784 dbSNP
rs191841817 2785 dbSNP
rs1019895928 2787 dbSNP
rs747122727 2789 dbSNP
rs1370216131 2790 dbSNP
rs996807149 2792 dbSNP
rs778650934 2796 dbSNP
rs968743063 2797 dbSNP
rs1256736035 2801 dbSNP
rs980953767 2802 dbSNP
rs1483953899 2804 dbSNP
rs1194924952 2809 dbSNP
rs1356645405 2810 dbSNP
rs1266058114 2816 dbSNP
rs1241996666 2817 dbSNP
rs1430943584 2817 dbSNP
rs1200615765 2820 dbSNP
rs553260593 2827 dbSNP
rs143723782 2828 dbSNP
rs768849920 2829 dbSNP
rs1406128112 2830 dbSNP
rs184010317 2830 dbSNP
rs777332757 2833 dbSNP
rs1161476557 2841 dbSNP
rs926811878 2843 dbSNP
rs202174273 2844 dbSNP
rs371117483 2844 dbSNP
rs879623166 2844 dbSNP
rs979486613 2844 dbSNP
rs12944611 2845 dbSNP
rs71369025 2845 dbSNP
rs12939611 2846 dbSNP
rs1180822167 2850 dbSNP
rs773585102 2854 dbSNP
rs541915884 2855 dbSNP
rs1207542961 2861 dbSNP
rs918118973 2862 dbSNP
rs1365658069 2863 dbSNP
rs759133737 2868 dbSNP
rs908510690 2869 dbSNP
rs767248378 2873 dbSNP
rs919564110 2874 dbSNP
rs1279269946 2881 dbSNP
rs930999072 2882 dbSNP
rs1046739170 2889 dbSNP
rs1333037159 2890 dbSNP
rs9903168 2891 dbSNP
rs1161496984 2892 dbSNP
rs575233011 2892 dbSNP
rs1217333544 2897 dbSNP
rs1264772013 2898 dbSNP
rs1458716447 2904 dbSNP
rs1409675005 2907 dbSNP
rs760246785 2912 dbSNP
rs543342268 2914 dbSNP
rs1050252888 2918 dbSNP
rs1478270720 2918 dbSNP
rs1211144135 2919 dbSNP
rs1040882623 2920 dbSNP
rs1267381081 2921 dbSNP
rs1210060111 2936 dbSNP
rs1463889821 2940 dbSNP
rs1438713909 2946 dbSNP
rs888965055 2956 dbSNP
rs1176331695 2957 dbSNP
rs1347630629 2959 dbSNP
rs1382626024 2962 dbSNP
rs899669003 2966 dbSNP
rs1366244317 2967 dbSNP
rs563229180 2967 dbSNP
rs956332332 2972 dbSNP
rs1343358720 2974 dbSNP
rs1317601846 2976 dbSNP
rs1009185704 2977 dbSNP
rs1164748061 2978 dbSNP
rs1021950022 2979 dbSNP
rs1453350995 2984 dbSNP
rs996735035 2986 dbSNP
rs1459858512 2987 dbSNP
rs370053528 3002 dbSNP
rs763584551 3003 dbSNP
rs1189924468 3007 dbSNP
rs1043011312 3010 dbSNP
rs15153 3013 dbSNP
rs538736049 3016 dbSNP
rs1463214359 3018 dbSNP
rs1242014423 3020 dbSNP
rs1245073644 3021 dbSNP
rs1444659622 3022 dbSNP
rs1276903143 3023 dbSNP
rs1210626968 3025 dbSNP
rs968314902 3025 dbSNP
rs981452802 3033 dbSNP
rs753790297 3034 dbSNP
rs1000852988 3036 dbSNP
rs557236573 3037 dbSNP
rs1448614912 3039 dbSNP
rs1360833647 3042 dbSNP
rs956808818 3044 dbSNP
rs1370782280 3057 dbSNP
rs1426199074 3058 dbSNP
rs773243152 3058 dbSNP
rs200372170 3060 dbSNP
rs370478664 3064 dbSNP
rs201703376 3068 dbSNP
rs1474024121 3078 dbSNP
rs143909309 3081 dbSNP
rs757155798 3085 dbSNP
rs1483608139 3088 dbSNP
rs1277006810 3093 dbSNP
rs1311696573 3095 dbSNP
rs1203223767 3099 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3607.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guagucuUUCG-CAAAUGUCa 5'
                 ||||  ||||||| 
Target 5' aucuuccAAGCACUUUACAG- 3'
 		2 - 21
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3607.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000335255.5 | 3UTR | CAUCUUCCAAGCACUUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000335255.5 | 3UTR | CAUCUUCCAAGCACUUUACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PRAD 0.267 0.03 0.384 0 50 Click to see details
KIRP -0.299 0.05 -0.165 0.18 32 Click to see details
KIRC -0.202 0.05 -0.156 0.1 68 Click to see details
ESCA 0.509 0.05 0.491 0.06 11 Click to see details
KICH -0.3 0.07 -0.227 0.14 25 Click to see details
CESC -0.966 0.08 -1.000 0.5 3 Click to see details
STAD -0.196 0.15 -0.160 0.2 30 Click to see details
LUSC 0.151 0.18 0.140 0.2 38 Click to see details
BLCA 0.219 0.2 0.287 0.13 17 Click to see details
BRCA 0.091 0.21 0.149 0.09 84 Click to see details
PCPG 0.748 0.23 0.500 0.33 3 Click to see details
PAAD -0.38 0.31 -0.200 0.4 4 Click to see details
LIHC -0.05 0.37 -0.024 0.43 49 Click to see details
THCA -0.033 0.4 -0.149 0.13 59 Click to see details
LUAD 0.078 0.4 0.280 0.19 12 Click to see details
CHOL -0.089 0.41 0.067 0.43 9 Click to see details
HNSC 0.014 0.47 0.027 0.43 41 Click to see details
UCEC -0.021 0.47 -0.075 0.38 19 Click to see details
UCEC -0.021 0.47 -0.075 0.38 19 Click to see details
93 hsa-miR-3607-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057680 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT058092 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT063624 FBXO28 F-box protein 28 2 2
MIRT071884 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT079440 FOXK2 forkhead box K2 2 4
MIRT080491 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT081214 MIDN midnolin 2 10
MIRT082786 ZNF264 zinc finger protein 264 2 2
MIRT082862 ZNF543 zinc finger protein 543 2 4
MIRT099112 FOXC1 forkhead box C1 2 4
MIRT099343 QKI QKI, KH domain containing RNA binding 2 2
MIRT100913 CD2AP CD2 associated protein 2 2
MIRT104030 USP42 ubiquitin specific peptidase 42 2 6
MIRT130023 QSER1 glutamine and serine rich 1 2 2
MIRT142614 IL21R interleukin 21 receptor 2 2
MIRT143477 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT187759 ESYT1 extended synaptotagmin 1 2 2
MIRT200250 EVI5 ecotropic viral integration site 5 2 2
MIRT212867 N4BP2 NEDD4 binding protein 2 2 2
MIRT219622 GIGYF1 GRB10 interacting GYF protein 1 2 8
MIRT220244 FAM3C family with sequence similarity 3 member C 2 6
MIRT222069 PURB purine rich element binding protein B 2 2
MIRT243478 TRIM71 tripartite motif containing 71 2 2
MIRT261690 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT320184 ITGB8 integrin subunit beta 8 2 2
MIRT441644 CCNB1IP1 cyclin B1 interacting protein 1 2 6
MIRT441965 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT442175 TRIM59 tripartite motif containing 59 2 4
MIRT442716 TNKS tankyrase 2 2
MIRT443932 ZNF418 zinc finger protein 418 2 2
MIRT445790 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT448148 P2RY10 purinergic receptor P2Y10 2 2
MIRT463393 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT463761 YPEL2 yippee like 2 2 2
MIRT477233 ETF1 eukaryotic translation termination factor 1 2 2
MIRT483464 DR1 down-regulator of transcription 1 2 6
MIRT484110 ABCD2 ATP binding cassette subfamily D member 2 2 4
MIRT487297 SLC38A9 solute carrier family 38 member 9 2 2
MIRT501292 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 4
MIRT501343 RNF44 ring finger protein 44 2 4
MIRT502696 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT511075 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511243 KLHL36 kelch like family member 36 2 6
MIRT531418 PLBD2 phospholipase B domain containing 2 2 2
MIRT536603 IRF2 interferon regulatory factor 2 2 2
MIRT537727 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537985 DPP8 dipeptidyl peptidase 8 2 2
MIRT539083 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 4
MIRT547185 PBRM1 polybromo 1 2 2
MIRT547596 LIN28B lin-28 homolog B 2 2
MIRT548188 FOXA1 forkhead box A1 2 2
MIRT555055 PYURF PIGY upstream reading frame 2 2
MIRT557321 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT557979 FAM217B family with sequence similarity 217 member B 2 4
MIRT558439 DDIT4 DNA damage inducible transcript 4 2 3
MIRT558560 CRLF3 cytokine receptor like factor 3 2 4
MIRT562332 FGF2 fibroblast growth factor 2 2 2
MIRT565836 SCML2 Scm polycomb group protein like 2 2 2
MIRT566796 MIER3 MIER family member 3 2 2
MIRT568565 AK4 adenylate kinase 4 2 2
MIRT572483 PRR14L proline rich 14 like 2 2
MIRT572586 HGFAC HGF activator 2 2
MIRT572876 OPHN1 oligophrenin 1 2 2
MIRT573136 ABT1 activator of basal transcription 1 2 2
MIRT573244 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT573388 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT574588 N4BP1 NEDD4 binding protein 1 2 2
MIRT575081 Ddit4 DNA-damage-inducible transcript 4 2 3
MIRT609077 SMIM15 small integral membrane protein 15 2 8
MIRT619337 RNF2 ring finger protein 2 2 2
MIRT623058 NRXN1 neurexin 1 2 2
MIRT623307 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT623899 FOXN3 forkhead box N3 2 2
MIRT625177 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT630448 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT630587 SLC9A8 solute carrier family 9 member A8 2 2
MIRT634451 PAK6 p21 (RAC1) activated kinase 6 2 2
MIRT634727 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635769 PDCL3 phosducin like 3 2 2
MIRT650924 ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 2 2
MIRT668975 CLSTN2 calsyntenin 2 2 2
MIRT669612 AEBP2 AE binding protein 2 2 2
MIRT686746 STX16 syntaxin 16 2 2
MIRT687932 HMGN1 high mobility group nucleosome binding domain 1 2 2
MIRT691875 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT698432 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT698572 TFDP2 transcription factor Dp-2 2 2
MIRT704500 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT704907 CCDC71L coiled-coil domain containing 71 like 2 2
MIRT713810 XRCC2 X-ray repair cross complementing 2 2 2
MIRT718300 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT719022 SHROOM3 shroom family member 3 2 2
MIRT723766 MPLKIP M-phase specific PLK1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3607 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3607 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-mir-3607 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-3607 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-mir-3607 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3607-3p Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3607-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607-3p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-3607-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3607-3p Platinum 23939 resistant tissue
hsa-miR-3607-3p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3607-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Bortezomib 387447 NSC681239 approved sensitive tissue (multiple myeloma)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-3607-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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