miRTarBase - #MIRT080091


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pre-miRNA Information
pre-miRNA hsa-mir-3128   
Genomic Coordinates chr2: 177255945 - 177256010
Description Homo sapiens miR-3128 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3128
Sequence 5| UCUGGCAAGUAAAAAACUCUCAU |27
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31530001 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1235581387 2 dbSNP
rs1336086844 4 dbSNP
rs1049299498 14 dbSNP
rs1442692120 17 dbSNP
rs574224659 17 dbSNP
rs911997793 17 dbSNP
rs1235274433 19 dbSNP
rs868602383 21 dbSNP
Putative Targets

Gene Information
Gene Symbol C18orf25   
Synonyms ARKL1, RNF111L1
Description chromosome 18 open reading frame 25
Transcript NM_001008239   
Other Transcripts NM_145055   
Expression
Putative miRNA Targets on C18orf25
3'UTR of C18orf25
(miRNA target sites are highlighted)		 
>C18orf25|NM_001008239|3'UTR
   1 TACAATGTCACTGTGTTTCCTCTGCACTGTTCCCTTCCACTTCCTCATCCTCTTTGTGACATGGAAGTTCATTGTCATAG
  81 CTTCAGCTTCAGAAGCTGTTTGTGGCATTTGTAGGATTCAAACTCATGGAAAATTCCCTCCTCTTCCCCCCTTTTTTTAA
 161 TTAAAAGAAGTCACTTAGGAAAATAACATCACAGAGAAAAGAATTTCTTCTTTCCCTCAGTAGGAATATAGAATGATGAA
 241 TTTTATTAGACAACTTTATTTTACTTGGTGACTTTTAATCTTAGGAAACTCTGCCTTCCTTTTAGAATAATATTTTAATT
 321 GCCAGGCAAAATGGGTTTCAGTTTTTGAATCTTGTATTTATTTTTCTGTATAATGAAATTAATATCTAGACTTGACCACT
 401 ATCTGCCCACCCCATTGGCACTCCCATCTTAGGGCATTCGCACACATATCAGTCAGGTCCTTATTGGCACCTAGTAGGGC
 481 ATGTGCATTTAAAAACTTGTCCTTAAAAATAGAAGACAGAAGTATTAAAATTATATTTTCTTTTATTTTAAGTCTTCTGC
 561 CTTCTTTCTTGAGTTTGCTCCTGTTGACTTCCCACAGCACAGATAATTGACATGTCCCTTTGTGTTTATAAATACTACTA
 641 AGGTGACCTAGTTGGTCTCCTTGTTGCAATAATTAATAACTCTTTGCAAAATGTCTCCTTTGAGACAGAGGCATTTCAGA
 721 TAGATACCCACCATGAGGTGTTCTGGGCATCTGAAGGTATTAAGAGTTCAGTGGGAAAAATCTCTCTCCCTCGCCTTTTT
 801 TTCTGGTTTAGTCAAATAACGGGTGAACATAGAAACCTGTTGGGAAGAATATGAAAAGTTATGTGGCCTCTGAGGCTACA
 881 GGCACTTGCAAATCCGAGAGGAAAGTGCCGTCTTTCATAGCTGGTCTCTGTATAAAGAGTATGTAGCAACAACTGTTTAA
 961 CATCCGAGATGAAGTGGACCTGATGCTGTATTTGGGTATTTTTCTCCTCTACCTTCTAAAAAAAAATACCATAAGAAGAA
1041 TCAGAATGTACCATAAGAAATCAGATGCAAAGCACGTTAATGTCATTGGTAAGTTTTACAGAGTCTAAAAGGATTAGCAA
1121 AGGGTAGCAGGAGCTTCAGGGAATTCAGGAAATGCCAGCATTGGAATTTTGTGGCATTAGTTACTACCTTCTTTCTTATA
1201 ATATGTTGTAGTTACTAGTGAATTCTTTTAAAAGCAATACCTAGAGTTAGAACACTATGTACTCTGCACAGGGGGAGTGA
1281 AGTAATATTGGCTTAGAAGACTTCACCTTTTGTTTTTCATGGTTTTTGTTTGTTTTGTTTTTGTTTTTGTTTCCATTGTT
1361 ACCGTTGCTATGGCCCTTTGCCTGTCTCTCCAAATCCCCTGGTGGCTCTTCTTATCATTAAGAGTATGAGAATTACCATT
1441 TTCAGTTTTCATTCAGCAAACAAATTTACCAAGTGCCTGCTCTGCATAAGGCACTGTGAGGGGTGGGTGCTCTGGGGGCT
1521 GCTGAGATGAATGACACACACCGCACATACACATGCATCAGTGTCTGCCTGCCTCCACCTGCCCAGCCTGTTCTTCTTCT
1601 TCTTCTTCATCTTCTTCTTTTTTTTTTTTTTTTGTAAAGACAAGTTTATTCCTTTACGCTTCTTGTTGCATTAGTTCTCC
1681 TGTATGTTCCTTCTTCCACAGGAATGTATTTGTGCATATGTTCTTTGATCTTCTCTGATAGCATCTCATTTGATCTGGCC
1761 TCTGTCCTTCATCAGCTTTTATTTTTTTTATTTTTATTTTCTGCTTTTGTTAGATAAGGCTTTTAAGATCATGAACCTCC
1841 AGCTTTAGCAACTCATATATCAGTCTCTCACATGGCCACAATTCTAGACAAAAACCAAAGACCCAGAGGCCAGAGCAAAG
1921 TAGGACCTTCTGAAGATTCACTACTGGTGTATCCTTGGACCTTCACATTTTACTTTAGGATTAATTTATTGAATTTTACT
2001 GTTACACATAGTTTTTGACTTGAATTAAAATACTAGACAAAGCAGAAATGTACAATTTCTGGTCTGTGTTTTCCAGGAAA
2081 TTCATAGAGAAGAGAATAGAGTGGATGATGTGACTTGAAGTTTTTGCAGCTTATTTTTTCCCCCACTGTCAGGGCAGAGG
2161 CCCATTTTAATGAATGTTTTTGCATGACCTGTTCTTATGTTAACCACATATTTTTTTTCCCAATTCCACACAGCAGGTGA
2241 TTTCCCGTGTGACATATTTTCTTCATAGTCCCTAATATAGTCATCCTCTACAGAGTTGGCGTGCTGTGTGCACTGTGGAT
2321 TAGGAACAGAGTGGAGCTGTAACCAGTCTCTTCTCTGGCCCTTTGCCTTTATGTCAGCTTGCACTTTTGCCTCACTTATT
2401 CCTAGTCCAGCTCCCAACTGCCTGACTTAATGGACCAGAACGGAGATTTGGATATTAAGATGCAGAGGGGGAGGGGAAGG
2481 GATGGTAGAGATAGACAGCTCTCCCCTACTAGGTTGGGTCATTTCCCCTAATAACTATAGAGAGACTGTGTTTCAACTCT
2561 CTTTTCATTGCTGTTTCCAGAAGAGTGGAGAGTGTGGTTTCAGGCAAGGTATTAATGATACAATTCCGTGGTATACAGCT
2641 CCTGTGACATTTGAAGTTTCTTTTAAAGGGGTTTTTCTTAATCAAAGTTTTACATTTGGTAGCATAAGTAGTTCTTTATG
2721 CTTCACAGGACATTGTCTTCAGAGTAATCTCTCTGCTAAAATGGTACATGTGGGTCACAGATTGGTTTATGCCACTGACT
2801 TGGTTAAGTTTCCACCCCCTCCAATTTGTGAAAAACAGAGCAGTGACCTAGCTGTTGCATCATCATGACTGCCATGTAAC
2881 CTGTAATTGCTGCTCTCCAGTAATTGTCTTTTCATTTTGATGGTAGGGGCCAGACTGAATGAATAATGCATTCTTTTTTA
2961 TTCAATTTATTTCATTCAGTTTATTCTTGGCAATCAAACATCCCATAAACTTTGCTTTTATTATCAATTATGAATATGAA
3041 TTGTCTGGTTTACTAATGTAGTCATTTGTTCATCTTTACTTTTAGCAGATTAGCACCATAACTAACTTAAAACTAAGTTT
3121 GTTACCTGCTTTTTATACTGTCACAAAGGTTTTTGAAAAAGCTGGGGACACTATTTTGTCTTTTAGTTTTAAACTTTTTT
3201 AAGGCAAAGCAAGCTCCCCAATCCCTGTTCTCCAATATGTGTATGATGTGACTTCCATGTAGATATAAAAATGATTGTGC
3281 CCTAACCAAACTTCCTCAGATTGTGCACTGTTTGTTTAAAATAATCACGTATTTTAGTCTGATGCTGTTGTATTTTTTCA
3361 TTTTATTTAAAACACTACTTACTTCTTATTCTCTTAACAAATTTTAAAAGGTAGTGATCTTAAAAAAAAATCACTGGATA
3441 ACTAGGAAATATTTTTGTTGTTGTTTTGTTTCTTAAAGAGTACAGAGGCCATTGAAGCCTTTTGCTCCTCTTACCGTGAA
3521 AATGAAATGTTAGCCATTGTATGGCTAGGAACCAATGCACTTGGCAGTTAATGGATCTGCTGTTGCTGGAGTGTGAGCGT
3601 GGACTTGATGCAGTGATGACAAATCATTGCTTAGAATTAATGTTTTCAAATGTGCAACTCTAGTTTTTAAAACAAAATTT
3681 GGTTCTTTACATTCATTATTTCGTTTTTGTTTCCCTTTAGTATTTAATGGTCTTTGGAGAAAAAATAATAAAACAGAGTG
3761 TTATATATATATTTTTTGGTGCAAGATAAGATTTTCTGTTTTTTGAAATAAGTCTGTAGCATAAAGGTTAAACTATTTTA
3841 AGACAAAATAAAATAGAGTGTATTTAAACAATGAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uacUCUCAAAAAAUGAACGGUCu 5'
             | | | ||||| ||||||| 
Target 5' agaATAATATTTTAATTGCCAGg 3'
 304 - 326 168.00 -12.50
2 
miRNA  3' uacucucAAAAAAUG--AACGGUCu 5'
                 |||| |:|  |||::|| 
Target 5' atttttaTTTTCTGCTTTTGTTAGa 3'
 1790 - 1814 126.00 -7.70
3 
miRNA  3' uacucucAAAA--AAUG--AACGGUCu 5'
                 ||||  ||:|  || |||| 
Target 5' aactctcTTTTCATTGCTGTTTCCAGa 3'
 2555 - 2581 124.00 -8.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31553245 9 COSMIC
COSN30108514 114 COSMIC
COSN31596975 152 COSMIC
COSN7360592 153 COSMIC
COSN31600157 168 COSMIC
COSN1206399 369 COSMIC
COSN6124787 427 COSMIC
COSN29634186 441 COSMIC
COSN26346562 510 COSMIC
COSN30543858 587 COSMIC
COSN28668346 991 COSMIC
COSN29527310 1027 COSMIC
COSN30545388 1059 COSMIC
COSN31482462 1102 COSMIC
COSN31571498 1374 COSMIC
COSN31961430 1374 COSMIC
COSN30174396 1455 COSMIC
COSN26778947 1520 COSMIC
COSN7360593 1543 COSMIC
COSN31589828 1607 COSMIC
COSN20114946 1634 COSMIC
COSN1206401 1635 COSMIC
COSN30159355 1775 COSMIC
COSN28484143 1790 COSMIC
COSN28692943 2189 COSMIC
COSN26265610 2219 COSMIC
COSN31524263 2612 COSMIC
COSN6124788 2620 COSMIC
COSN20114948 2801 COSMIC
COSN16832228 2824 COSMIC
COSN1744509 2944 COSMIC
COSN20275150 3110 COSMIC
COSN26553805 3187 COSMIC
COSN30159695 3295 COSMIC
COSN26330718 3352 COSMIC
COSN31520889 3355 COSMIC
COSN31582957 3426 COSMIC
COSN31530692 3433 COSMIC
COSN31530253 3479 COSMIC
COSN31537407 3488 COSMIC
COSN31489905 3550 COSMIC
COSN30544705 3704 COSMIC
COSN31571486 3745 COSMIC
COSN31564937 3752 COSMIC
COSN24306370 3774 COSMIC
COSN26465483 3804 COSMIC
COSN26465158 3843 COSMIC
COSN26574634 3874 COSMIC
rs3744858 2189 GWAS
rs3842397 2801 GWAS
rs755467826 2801 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1305389668 1 dbSNP
rs201781548 6 dbSNP
rs1338883093 10 dbSNP
rs766974541 12 dbSNP
rs1482185972 15 dbSNP
rs1181806785 24 dbSNP
rs753491164 27 dbSNP
rs1252980907 33 dbSNP
rs1421251263 35 dbSNP
rs1185971310 36 dbSNP
rs1368421372 37 dbSNP
rs1457933336 40 dbSNP
rs1177521703 46 dbSNP
rs758549278 47 dbSNP
rs764454031 48 dbSNP
rs1235319972 50 dbSNP
rs1307585374 51 dbSNP
rs1428702527 52 dbSNP
rs1308267616 53 dbSNP
rs1202715305 62 dbSNP
rs1461370356 71 dbSNP
rs1264516721 83 dbSNP
rs1227065169 84 dbSNP
rs140741823 86 dbSNP
rs932599334 87 dbSNP
rs1048280906 101 dbSNP
rs993809031 102 dbSNP
rs888316709 108 dbSNP
rs754664124 115 dbSNP
rs758209304 123 dbSNP
rs1408349827 124 dbSNP
rs1318576920 128 dbSNP
rs952664941 142 dbSNP
rs544868826 144 dbSNP
rs1159753020 146 dbSNP
rs1420650874 148 dbSNP
rs376437618 151 dbSNP
rs1485556577 153 dbSNP
rs1244633483 157 dbSNP
rs1206212883 168 dbSNP
rs553223006 178 dbSNP
rs1186172648 181 dbSNP
rs533497718 187 dbSNP
rs551882332 191 dbSNP
rs1218627317 197 dbSNP
rs1037239533 215 dbSNP
rs1320267227 216 dbSNP
rs1314838526 219 dbSNP
rs1247212555 221 dbSNP
rs1385200248 222 dbSNP
rs1254282871 223 dbSNP
rs895570202 229 dbSNP
rs1381652451 230 dbSNP
rs1385848976 234 dbSNP
rs1419841715 252 dbSNP
rs1455330228 272 dbSNP
rs1158535012 274 dbSNP
rs1362100654 277 dbSNP
rs927180929 287 dbSNP
rs1425094754 289 dbSNP
rs959717130 290 dbSNP
rs1190658448 292 dbSNP
rs1427392816 298 dbSNP
rs1261875787 319 dbSNP
rs992266610 328 dbSNP
rs1291718914 332 dbSNP
rs1375923828 335 dbSNP
rs187467427 351 dbSNP
rs1362045857 366 dbSNP
rs1044098287 369 dbSNP
rs1227043623 372 dbSNP
rs1327081412 381 dbSNP
rs374394712 381 dbSNP
rs73427111 388 dbSNP
rs1352003556 393 dbSNP
rs549015020 405 dbSNP
rs1343516728 407 dbSNP
rs1002482710 408 dbSNP
rs73427112 413 dbSNP
rs770243037 414 dbSNP
rs796273926 416 dbSNP
rs1425056639 422 dbSNP
rs778651983 440 dbSNP
rs752278583 441 dbSNP
rs1461206487 444 dbSNP
rs1050347545 447 dbSNP
rs1281671274 450 dbSNP
rs1171843508 453 dbSNP
rs889986001 458 dbSNP
rs537744872 465 dbSNP
rs965446104 466 dbSNP
rs1490939810 474 dbSNP
rs1209203495 484 dbSNP
rs1250127693 488 dbSNP
rs976791575 504 dbSNP
rs1195415679 509 dbSNP
rs1340274304 514 dbSNP
rs1040743187 515 dbSNP
rs1231092046 516 dbSNP
rs746885880 518 dbSNP
rs1282542070 522 dbSNP
rs778466316 523 dbSNP
rs1176827184 525 dbSNP
rs1347122921 526 dbSNP
rs1326559610 527 dbSNP
rs1248576053 534 dbSNP
rs1390627355 536 dbSNP
rs1396698796 541 dbSNP
rs76080882 554 dbSNP
rs984478695 555 dbSNP
rs768719308 573 dbSNP
rs939893993 579 dbSNP
rs1036887798 580 dbSNP
rs1434006019 584 dbSNP
rs142529471 585 dbSNP
rs1001496708 592 dbSNP
rs776240336 593 dbSNP
rs747532069 594 dbSNP
rs1372173518 596 dbSNP
rs1044152850 601 dbSNP
rs747682401 604 dbSNP
rs538369709 605 dbSNP
rs1438770928 613 dbSNP
rs553417539 619 dbSNP
rs1297264733 635 dbSNP
rs571956542 638 dbSNP
rs757624035 641 dbSNP
rs74414439 645 dbSNP
rs1388040691 650 dbSNP
rs992673258 651 dbSNP
rs9956233 656 dbSNP
rs1325531233 664 dbSNP
rs1237973076 681 dbSNP
rs917983992 707 dbSNP
rs966787604 712 dbSNP
rs1404681929 721 dbSNP
rs894073756 725 dbSNP
rs1010203639 734 dbSNP
rs1308429642 744 dbSNP
rs1470684126 756 dbSNP
rs1021150091 760 dbSNP
rs1158506173 765 dbSNP
rs1470707101 771 dbSNP
rs1365958100 784 dbSNP
rs965500441 785 dbSNP
rs192570365 787 dbSNP
rs1205575453 790 dbSNP
rs1445356169 793 dbSNP
rs772886758 794 dbSNP
rs954094525 799 dbSNP
rs925346988 803 dbSNP
rs1204546698 809 dbSNP
rs146689147 817 dbSNP
rs909851298 821 dbSNP
rs1252422028 822 dbSNP
rs1453795724 824 dbSNP
rs1243543860 826 dbSNP
rs961333675 830 dbSNP
rs1315333091 831 dbSNP
rs1454058965 837 dbSNP
rs544907045 850 dbSNP
rs563101095 851 dbSNP
rs1421502091 852 dbSNP
rs868588286 863 dbSNP
rs1428899614 864 dbSNP
rs1387811108 875 dbSNP
rs1162003910 877 dbSNP
rs578196013 879 dbSNP
rs538817327 881 dbSNP
rs1185730990 887 dbSNP
rs545531689 894 dbSNP
rs1352420999 896 dbSNP
rs560591792 897 dbSNP
rs1288107612 899 dbSNP
rs1219908439 906 dbSNP
rs1044215536 908 dbSNP
rs1229720256 908 dbSNP
rs927029740 910 dbSNP
rs775643571 911 dbSNP
rs1430849206 913 dbSNP
rs749403590 918 dbSNP
rs993909088 921 dbSNP
rs76561495 922 dbSNP
rs888140689 925 dbSNP
rs1366644231 926 dbSNP
rs865937738 928 dbSNP
rs891441478 933 dbSNP
rs1300459530 939 dbSNP
rs1363229135 961 dbSNP
rs1408474209 962 dbSNP
rs184805993 966 dbSNP
rs1168521264 967 dbSNP
rs1034241065 984 dbSNP
rs1265167336 986 dbSNP
rs575528275 995 dbSNP
rs1323776737 997 dbSNP
rs1214551060 1007 dbSNP
rs1272690451 1008 dbSNP
rs561116104 1012 dbSNP
rs1014056405 1014 dbSNP
rs1271867159 1015 dbSNP
rs1214575730 1017 dbSNP
rs544666887 1018 dbSNP
rs966782655 1018 dbSNP
rs1223493828 1023 dbSNP
rs547994470 1027 dbSNP
rs1032746127 1032 dbSNP
rs771309303 1033 dbSNP
rs1354100798 1035 dbSNP
rs549638503 1039 dbSNP
rs998316783 1054 dbSNP
rs571125160 1058 dbSNP
rs958036864 1077 dbSNP
rs1411729734 1083 dbSNP
rs187815533 1086 dbSNP
rs1185763588 1090 dbSNP
rs1417084306 1100 dbSNP
rs1429930801 1101 dbSNP
rs547180526 1102 dbSNP
rs1479537577 1108 dbSNP
rs1231949531 1113 dbSNP
rs565817111 1123 dbSNP
rs1006022353 1126 dbSNP
rs1476020258 1135 dbSNP
rs1204849668 1139 dbSNP
rs911440727 1141 dbSNP
rs535957736 1147 dbSNP
rs1222406737 1154 dbSNP
rs139026827 1158 dbSNP
rs961659776 1175 dbSNP
rs972716617 1182 dbSNP
rs1304071482 1186 dbSNP
rs918792119 1187 dbSNP
rs1373146231 1189 dbSNP
rs1280349356 1212 dbSNP
rs1449326685 1218 dbSNP
rs1024233849 1223 dbSNP
rs929707379 1227 dbSNP
rs971262119 1233 dbSNP
rs1430609104 1238 dbSNP
rs1178227947 1239 dbSNP
rs753621419 1241 dbSNP
rs927081823 1246 dbSNP
rs935792578 1255 dbSNP
rs1441117903 1256 dbSNP
rs1240912361 1258 dbSNP
rs1202424687 1261 dbSNP
rs1381782253 1266 dbSNP
rs1234222819 1270 dbSNP
rs1258267692 1271 dbSNP
rs1292911209 1274 dbSNP
rs936997960 1275 dbSNP
rs1285338656 1276 dbSNP
rs1055870290 1278 dbSNP
rs1332900852 1288 dbSNP
rs1380776155 1294 dbSNP
rs1230330505 1297 dbSNP
rs1453459309 1301 dbSNP
rs990286800 1306 dbSNP
rs895701845 1310 dbSNP
rs1285016283 1318 dbSNP
rs1451604396 1323 dbSNP
rs1344557568 1329 dbSNP
rs142440469 1333 dbSNP
rs374510215 1333 dbSNP
rs763566006 1338 dbSNP
rs1214975225 1339 dbSNP
rs760648256 1342 dbSNP
rs554586980 1353 dbSNP
rs1444709400 1354 dbSNP
rs1257703212 1363 dbSNP
rs945695846 1364 dbSNP
rs139249539 1365 dbSNP
rs1485806449 1367 dbSNP
rs1243207707 1371 dbSNP
rs1219178849 1377 dbSNP
rs1188305624 1381 dbSNP
rs1291315540 1384 dbSNP
rs1247043766 1399 dbSNP
rs1256399708 1407 dbSNP
rs1293462018 1425 dbSNP
rs901436092 1426 dbSNP
rs934222942 1428 dbSNP
rs1361103928 1432 dbSNP
rs1298745060 1443 dbSNP
rs766153763 1450 dbSNP
rs1363554281 1463 dbSNP
rs1000451243 1465 dbSNP
rs192305564 1473 dbSNP
rs57160009 1487 dbSNP
rs958367391 1488 dbSNP
rs1167623859 1489 dbSNP
rs1005660305 1494 dbSNP
rs1018267225 1495 dbSNP
rs1196554859 1497 dbSNP
rs965595486 1508 dbSNP
rs1268686028 1509 dbSNP
rs976993885 1513 dbSNP
rs918741109 1536 dbSNP
rs556859054 1543 dbSNP
rs1017434927 1544 dbSNP
rs937094054 1548 dbSNP
rs1278756796 1551 dbSNP
rs1055456900 1552 dbSNP
rs1343383545 1553 dbSNP
rs578222433 1554 dbSNP
rs1392364289 1555 dbSNP
rs776497941 1556 dbSNP
rs1461042806 1565 dbSNP
rs1353853486 1567 dbSNP
rs1173431008 1574 dbSNP
rs1479714804 1576 dbSNP
rs8086610 1578 dbSNP
rs971314623 1579 dbSNP
rs1195510890 1591 dbSNP
rs1480981026 1591 dbSNP
rs199524693 1591 dbSNP
rs980001477 1594 dbSNP
rs768965632 1603 dbSNP
rs1201871910 1604 dbSNP
rs1321257267 1606 dbSNP
rs1282581809 1610 dbSNP
rs1332681709 1610 dbSNP
rs1304376228 1613 dbSNP
rs1280278383 1616 dbSNP
rs11405758 1618 dbSNP
rs1181773348 1618 dbSNP
rs1277827087 1618 dbSNP
rs1375329809 1618 dbSNP
rs1491028031 1618 dbSNP
rs35509991 1618 dbSNP
rs774434935 1618 dbSNP
rs895506976 1618 dbSNP
rs1350024485 1619 dbSNP
rs1222085327 1620 dbSNP
rs949935049 1621 dbSNP
rs1258686069 1623 dbSNP
rs1238100267 1629 dbSNP
rs1377098632 1634 dbSNP
rs76109390 1634 dbSNP
rs200571596 1635 dbSNP
rs1211397311 1637 dbSNP
rs1279309673 1638 dbSNP
rs1484526474 1645 dbSNP
rs1051504665 1649 dbSNP
rs554069131 1653 dbSNP
rs9959526 1654 dbSNP
rs1381487331 1657 dbSNP
rs1304673579 1658 dbSNP
rs1034207105 1659 dbSNP
rs1383460794 1666 dbSNP
rs957428635 1669 dbSNP
rs115931036 1671 dbSNP
rs1382393741 1673 dbSNP
rs1161977388 1675 dbSNP
rs1444057440 1689 dbSNP
rs1238174330 1702 dbSNP
rs1189735659 1706 dbSNP
rs1397452050 1716 dbSNP
rs1259581516 1717 dbSNP
rs1215550560 1720 dbSNP
rs1054706223 1721 dbSNP
rs1287710532 1731 dbSNP
rs989949988 1735 dbSNP
rs893885084 1736 dbSNP
rs1355008331 1738 dbSNP
rs1284221656 1746 dbSNP
rs1449620975 1748 dbSNP
rs758028287 1749 dbSNP
rs1007422044 1756 dbSNP
rs560408343 1759 dbSNP
rs1362895325 1760 dbSNP
rs1161881052 1767 dbSNP
rs975739569 1774 dbSNP
rs965376312 1782 dbSNP
rs998152971 1782 dbSNP
rs184507950 1790 dbSNP
rs1329802526 1793 dbSNP
rs1335324837 1797 dbSNP
rs1165009165 1818 dbSNP
rs752068566 1819 dbSNP
rs1371253328 1836 dbSNP
rs984271261 1836 dbSNP
rs1488476204 1842 dbSNP
rs1305696677 1855 dbSNP
rs1049950490 1856 dbSNP
rs911435759 1858 dbSNP
rs941519787 1871 dbSNP
rs1450640383 1874 dbSNP
rs1373154358 1875 dbSNP
rs1234931829 1879 dbSNP
rs1302487183 1882 dbSNP
rs1342630399 1898 dbSNP
rs1336963377 1910 dbSNP
rs531566011 1922 dbSNP
rs897248519 1948 dbSNP
rs1219838466 1951 dbSNP
rs958464425 1957 dbSNP
rs766295102 1958 dbSNP
rs1045789575 1959 dbSNP
rs1301635969 1960 dbSNP
rs907182923 1962 dbSNP
rs562758216 1965 dbSNP
rs1001491229 1969 dbSNP
rs1034671948 1972 dbSNP
rs1408272521 1973 dbSNP
rs547526885 1977 dbSNP
rs1169844079 1984 dbSNP
rs1478077450 1985 dbSNP
rs957277073 1986 dbSNP
rs949677699 2006 dbSNP
rs1011827851 2008 dbSNP
rs1041408140 2009 dbSNP
rs1020093145 2013 dbSNP
rs924486894 2018 dbSNP
rs1201884329 2020 dbSNP
rs1246926056 2023 dbSNP
rs1223372260 2025 dbSNP
rs1435547840 2037 dbSNP
rs1256816560 2038 dbSNP
rs1198764380 2051 dbSNP
rs935947648 2053 dbSNP
rs967546674 2054 dbSNP
rs1054290746 2056 dbSNP
rs543321908 2058 dbSNP
rs1368826664 2065 dbSNP
rs189847676 2065 dbSNP
rs922966021 2067 dbSNP
rs1399862133 2073 dbSNP
rs1193539713 2083 dbSNP
rs768038561 2084 dbSNP
rs1006964917 2086 dbSNP
rs1402294416 2086 dbSNP
rs1467248420 2086 dbSNP
rs1174277589 2091 dbSNP
rs1413674251 2095 dbSNP
rs1393742469 2096 dbSNP
rs72905367 2097 dbSNP
rs985712224 2104 dbSNP
rs911473043 2110 dbSNP
rs1328177764 2111 dbSNP
rs368510627 2121 dbSNP
rs1396110334 2122 dbSNP
rs998103384 2123 dbSNP
rs941596002 2127 dbSNP
rs1261810000 2134 dbSNP
rs951654763 2140 dbSNP
rs1313124688 2144 dbSNP
rs760716397 2149 dbSNP
rs918748159 2156 dbSNP
rs930066998 2157 dbSNP
rs143083618 2161 dbSNP
rs1006256282 2162 dbSNP
rs1449089567 2164 dbSNP
rs907235404 2175 dbSNP
rs1440191060 2176 dbSNP
rs1447142071 2183 dbSNP
rs1359705911 2185 dbSNP
rs1302591232 2186 dbSNP
rs3744858 2189 dbSNP
rs1229370531 2190 dbSNP
rs1398753032 2192 dbSNP
rs529827267 2193 dbSNP
rs1055759215 2199 dbSNP
rs1158944092 2205 dbSNP
rs756433706 2206 dbSNP
rs780297058 2209 dbSNP
rs1338388553 2211 dbSNP
rs1216408943 2212 dbSNP
rs1239723644 2213 dbSNP
rs749491456 2219 dbSNP
rs1020567063 2222 dbSNP
rs768783167 2224 dbSNP
rs1286975924 2225 dbSNP
rs547946430 2232 dbSNP
rs1468547215 2234 dbSNP
rs1312049199 2235 dbSNP
rs569680874 2238 dbSNP
rs967167279 2247 dbSNP
rs562707071 2248 dbSNP
rs1054812501 2255 dbSNP
rs181117633 2266 dbSNP
rs1030031534 2267 dbSNP
rs112805284 2271 dbSNP
rs1366383556 2279 dbSNP
rs1372865314 2282 dbSNP
rs1423898613 2288 dbSNP
rs754078230 2293 dbSNP
rs59752873 2297 dbSNP
rs867420369 2301 dbSNP
rs530481714 2302 dbSNP
rs1418762182 2307 dbSNP
rs1219292731 2314 dbSNP
rs1489902174 2316 dbSNP
rs1220785186 2325 dbSNP
rs1265099737 2326 dbSNP
rs1245597516 2334 dbSNP
rs1461017454 2338 dbSNP
rs1047048228 2339 dbSNP
rs887135904 2343 dbSNP
rs1323918679 2347 dbSNP
rs1005563796 2354 dbSNP
rs531831936 2365 dbSNP
rs370716204 2372 dbSNP
rs918789331 2376 dbSNP
rs1292642682 2378 dbSNP
rs930119358 2381 dbSNP
rs1383817120 2396 dbSNP
rs1351168813 2405 dbSNP
rs981572814 2414 dbSNP
rs1167946517 2418 dbSNP
rs184530446 2419 dbSNP
rs1325626478 2423 dbSNP
rs538953110 2425 dbSNP
rs1448114623 2428 dbSNP
rs1266938834 2432 dbSNP
rs937384839 2433 dbSNP
rs75133835 2442 dbSNP
rs148080454 2443 dbSNP
rs1198124899 2451 dbSNP
rs1335029208 2466 dbSNP
rs570084256 2469 dbSNP
rs1329199387 2477 dbSNP
rs947317195 2477 dbSNP
rs1031324731 2488 dbSNP
rs189050845 2504 dbSNP
rs1263135135 2507 dbSNP
rs1041634687 2509 dbSNP
rs765100341 2519 dbSNP
rs903060318 2525 dbSNP
rs989852140 2527 dbSNP
rs1173538515 2530 dbSNP
rs1464832297 2537 dbSNP
rs1377469041 2539 dbSNP
rs1200051118 2544 dbSNP
rs1206229832 2545 dbSNP
rs1236585077 2547 dbSNP
rs1261576811 2547 dbSNP
rs1487515537 2549 dbSNP
rs1458314686 2560 dbSNP
rs910422886 2562 dbSNP
rs997314947 2568 dbSNP
rs943298787 2577 dbSNP
rs576032372 2586 dbSNP
rs1030085265 2603 dbSNP
rs1255157968 2608 dbSNP
rs975880740 2610 dbSNP
rs923147780 2612 dbSNP
rs1162926378 2621 dbSNP
rs141863193 2628 dbSNP
rs116680295 2629 dbSNP
rs1016365086 2635 dbSNP
rs963072032 2642 dbSNP
rs576765426 2646 dbSNP
rs887218225 2651 dbSNP
rs180760066 2656 dbSNP
rs974763694 2657 dbSNP
rs894710305 2671 dbSNP
rs1013211361 2672 dbSNP
rs1158336553 2673 dbSNP
rs200816924 2680 dbSNP
rs542232030 2680 dbSNP
rs1240155649 2684 dbSNP
rs3744857 2700 dbSNP
rs999039141 2711 dbSNP
rs1255408522 2712 dbSNP
rs951569291 2715 dbSNP
rs1486568479 2721 dbSNP
rs1314432356 2727 dbSNP
rs957148248 2730 dbSNP
rs1353998463 2732 dbSNP
rs981625079 2737 dbSNP
rs1310758684 2742 dbSNP
rs928759438 2747 dbSNP
rs1241988061 2748 dbSNP
rs1340332992 2758 dbSNP
rs937438587 2762 dbSNP
rs1398148794 2774 dbSNP
rs991572305 2780 dbSNP
rs1017305952 2781 dbSNP
rs1310033110 2786 dbSNP
rs763583597 2790 dbSNP
rs1382410405 2793 dbSNP
rs1161479947 2794 dbSNP
rs1472545272 2795 dbSNP
rs1367815370 2799 dbSNP
rs1491005933 2799 dbSNP
rs3842397 2800 dbSNP
rs755467826 2800 dbSNP
rs914598014 2803 dbSNP
rs751430195 2812 dbSNP
rs114924090 2817 dbSNP
rs150586029 2819 dbSNP
rs1285928542 2820 dbSNP
rs929116953 2825 dbSNP
rs1213529468 2826 dbSNP
rs903114013 2832 dbSNP
rs1285265355 2839 dbSNP
rs1235725547 2844 dbSNP
rs186400875 2849 dbSNP
rs1277892270 2850 dbSNP
rs1401009675 2860 dbSNP
rs1362682842 2861 dbSNP
rs1180320761 2862 dbSNP
rs1321904513 2864 dbSNP
rs530618262 2865 dbSNP
rs1404808913 2866 dbSNP
rs1391607300 2874 dbSNP
rs1165097840 2875 dbSNP
rs941486680 2885 dbSNP
rs1421393849 2890 dbSNP
rs888928468 2896 dbSNP
rs1038772538 2899 dbSNP
rs915935165 2900 dbSNP
rs1007759900 2905 dbSNP
rs948935129 2909 dbSNP
rs1045988943 2915 dbSNP
rs756676187 2916 dbSNP
rs552242140 2927 dbSNP
rs1215027370 2933 dbSNP
rs1316537292 2934 dbSNP
rs898874680 2935 dbSNP
rs993180527 2948 dbSNP
rs1364573917 2949 dbSNP
rs1417761936 2951 dbSNP
rs1435967252 2961 dbSNP
rs1175356809 2966 dbSNP
rs1375828213 2997 dbSNP
rs1464143261 3000 dbSNP
rs139949497 3011 dbSNP
rs1169964977 3017 dbSNP
rs951623104 3020 dbSNP
rs1433809054 3021 dbSNP
rs1300723747 3032 dbSNP
rs550264098 3039 dbSNP
rs1189271112 3046 dbSNP
rs1053300266 3049 dbSNP
rs141854087 3054 dbSNP
rs750900798 3062 dbSNP
rs1305648937 3063 dbSNP
rs1035885005 3065 dbSNP
rs1375383888 3065 dbSNP
rs1237133631 3074 dbSNP
rs958900238 3088 dbSNP
rs992019547 3089 dbSNP
rs1199878733 3092 dbSNP
rs892870863 3100 dbSNP
rs914663079 3114 dbSNP
rs1011365117 3138 dbSNP
rs969171011 3145 dbSNP
rs1304700042 3146 dbSNP
rs1017670617 3180 dbSNP
rs964375439 3181 dbSNP
rs1330563518 3185 dbSNP
rs1253326306 3194 dbSNP
rs1356236082 3201 dbSNP
rs190854021 3205 dbSNP
rs1481052057 3206 dbSNP
rs181693622 3214 dbSNP
rs1175173880 3220 dbSNP
rs924599257 3230 dbSNP
rs933270173 3236 dbSNP
rs780384986 3240 dbSNP
rs536399850 3241 dbSNP
rs1178750708 3245 dbSNP
rs1481869378 3246 dbSNP
rs983681693 3248 dbSNP
rs1437815765 3259 dbSNP
rs1423737057 3263 dbSNP
rs1443420407 3274 dbSNP
rs554740136 3276 dbSNP
rs1195440901 3281 dbSNP
rs1238302745 3288 dbSNP
rs1291590925 3300 dbSNP
rs1395543907 3301 dbSNP
rs757102009 3308 dbSNP
rs768149368 3309 dbSNP
rs909084712 3311 dbSNP
rs910426972 3329 dbSNP
rs943220678 3330 dbSNP
rs867517898 3335 dbSNP
rs974212152 3348 dbSNP
rs1446981746 3349 dbSNP
rs916012179 3355 dbSNP
rs1314516284 3360 dbSNP
rs1417437792 3373 dbSNP
rs1397481831 3376 dbSNP
rs1442392218 3379 dbSNP
rs1327168256 3384 dbSNP
rs1037906139 3394 dbSNP
rs948678598 3400 dbSNP
rs1217852313 3411 dbSNP
rs1181826673 3416 dbSNP
rs1045765743 3422 dbSNP
rs928839390 3422 dbSNP
rs898928737 3434 dbSNP
rs1214946232 3436 dbSNP
rs1488046813 3444 dbSNP
rs934964854 3447 dbSNP
rs549060602 3452 dbSNP
rs1320041285 3456 dbSNP
rs1226952533 3458 dbSNP
rs78386198 3464 dbSNP
rs1227629618 3473 dbSNP
rs537134831 3478 dbSNP
rs1038736060 3479 dbSNP
rs555584801 3480 dbSNP
rs1359481839 3489 dbSNP
rs1289151996 3492 dbSNP
rs1003160317 3493 dbSNP
rs572463573 3496 dbSNP
rs1347656956 3499 dbSNP
rs1029986719 3501 dbSNP
rs950632837 3516 dbSNP
rs1488105156 3517 dbSNP
rs1189294160 3518 dbSNP
rs1421387151 3520 dbSNP
rs541331023 3528 dbSNP
rs1264133868 3531 dbSNP
rs1188558258 3538 dbSNP
rs1487641372 3540 dbSNP
rs1004823676 3552 dbSNP
rs1222411808 3553 dbSNP
rs1016495836 3557 dbSNP
rs1420936388 3559 dbSNP
rs1013091473 3582 dbSNP
rs1022180834 3583 dbSNP
rs1164941544 3589 dbSNP
rs78319436 3590 dbSNP
rs991081383 3594 dbSNP
rs915961294 3597 dbSNP
rs968856583 3598 dbSNP
rs977465417 3600 dbSNP
rs1292368587 3624 dbSNP
rs559340807 3653 dbSNP
rs1397322311 3662 dbSNP
rs1291065004 3663 dbSNP
rs1465414146 3665 dbSNP
rs574577346 3676 dbSNP
rs1381945527 3678 dbSNP
rs1173035909 3683 dbSNP
rs981435121 3687 dbSNP
rs928659638 3692 dbSNP
rs924651589 3694 dbSNP
rs1469929312 3696 dbSNP
rs1254778042 3704 dbSNP
rs934890685 3713 dbSNP
rs866535521 3722 dbSNP
rs1317240013 3740 dbSNP
rs1276582562 3746 dbSNP
rs989106650 3755 dbSNP
rs1337166694 3770 dbSNP
rs1300233482 3772 dbSNP
rs914822174 3779 dbSNP
rs947539431 3792 dbSNP
rs1372603569 3797 dbSNP
rs1039185528 3799 dbSNP
rs900252000 3812 dbSNP
rs1272594362 3815 dbSNP
rs1397847753 3815 dbSNP
rs933109824 3817 dbSNP
rs1219266196 3821 dbSNP
rs1051358505 3828 dbSNP
rs1455622724 3834 dbSNP
rs1378498872 3842 dbSNP
rs1178137885 3847 dbSNP
rs954708705 3859 dbSNP
rs1251169288 3870 dbSNP
rs1197320605 3875 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 147339.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 147339.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000282059.6 | 3UTR | AAUAAUAUUUUAAUUGCCAGGCAAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000282059.6 | 3UTR | AAUAAUAUUUUAAUUGCCAGGCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000282059.6 | 3UTR | AAUAAUAUUUUAAUUGCCAGGCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000282059.6 | 3UTR | AAUAAUAUUUUAAUUGCCAGGCAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000282059.6 | 3UTR | AAUAAUAUUUUAAUUGCCAGGCAAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000282059.6 | 3UTR | GAAUAAUAUUUUAAUUGCCAGGCAAAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000282059.6 | 3UTR | AAUAAUAUUUUAAUUGCCAGGCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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57 hsa-miR-3128 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080091 C18ORF25 chromosome 18 open reading frame 25 2 6
MIRT109617 KLHL15 kelch like family member 15 2 6
MIRT122644 E2F3 E2F transcription factor 3 2 2
MIRT204532 SLC39A10 solute carrier family 39 member 10 2 2
MIRT221677 ZNRF2 zinc and ring finger 2 2 2
MIRT230763 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT273299 CCNT1 cyclin T1 2 2
MIRT283494 KCTD5 potassium channel tetramerization domain containing 5 2 4
MIRT296656 MRGBP MRG domain binding protein 2 6
MIRT301972 NUP50 nucleoporin 50 2 4
MIRT332732 QSER1 glutamine and serine rich 1 2 2
MIRT456187 ZDHHC6 zinc finger DHHC-type containing 6 2 2
MIRT460334 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT478382 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT508130 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT511876 GOLGA7 golgin A7 2 6
MIRT512926 UBL4A ubiquitin like 4A 2 2
MIRT515891 FAM182B family with sequence similarity 182 member B 2 2
MIRT516564 PARP1 poly(ADP-ribose) polymerase 1 2 4
MIRT520203 WASL Wiskott-Aldrich syndrome like 2 2
MIRT525592 ANKRD49 ankyrin repeat domain 49 2 2
MIRT526047 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT531124 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT533604 TNPO1 transportin 1 2 2
MIRT552632 ZBTB41 zinc finger and BTB domain containing 41 2 2
MIRT555505 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT560185 SPRTN SprT-like N-terminal domain 2 2
MIRT571001 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT572913 MTMR3 myotubularin related protein 3 2 2
MIRT615263 DPF2 double PHD fingers 2 2 2
MIRT617721 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617981 ZNF234 zinc finger protein 234 2 4
MIRT618433 MYLK3 myosin light chain kinase 3 2 4
MIRT619670 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT620534 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621303 YIPF4 Yip1 domain family member 4 2 2
MIRT625058 ZNF556 zinc finger protein 556 2 2
MIRT627224 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT641086 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT645192 POLR3F RNA polymerase III subunit F 2 2
MIRT655546 PADI2 peptidyl arginine deiminase 2 2 2
MIRT663660 ZNF486 zinc finger protein 486 2 4
MIRT664038 RPL27A ribosomal protein L27a 2 2
MIRT664095 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT667034 PDE3A phosphodiesterase 3A 2 2
MIRT693811 SEC31A SEC31 homolog A, COPII coat complex component 2 2
MIRT694235 ZNF749 zinc finger protein 749 2 2
MIRT699244 SLC6A8 solute carrier family 6 member 8 2 2
MIRT702577 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT702960 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT703628 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT709931 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT712973 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT714884 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT719140 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT724999 CDC27 cell division cycle 27 2 2
MIRT735830 GREM1 gremlin 1, DAN family BMP antagonist 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3128 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3128 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-mir-3128 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-3128 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-3128 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3128 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3128 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3128 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3128 Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil resistant tissue (myasthenia gravis)
hsa-miR-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3128 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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