pre-miRNA Information
pre-miRNA hsa-mir-520e   
Genomic Coordinates chr19: 53675711 - 53675797
Description Homo sapiens miR-520e stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-520e
Sequence 54| AAAGUGCUUCCUUUUUGAGGG |74
Evidence Experimental
Experiments Array-cloned
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRKACB   
Synonyms PKA C-beta, PKACB
Description protein kinase cAMP-activated catalytic subunit beta
Transcript NM_002731   
Other Transcripts NM_182948 , NM_207578   
Expression
Putative miRNA Targets on PRKACB
3'UTR of PRKACB
(miRNA target sites are highlighted)
>PRKACB|NM_002731|3'UTR
   1 AGAGGAACAAGATGACATCTGAGCTCACACTCAGTGTTTGCACTCTGTTGAGAGATAAGGTAGAGCTGAGACCGTCCTTG
  81 TTGAAGCAGTTACCTAGTTCCTTCATTCCAACGACTGAGTGAGGTCTTTATTGCCATCATCCCGTGTGCGCACTCTGCAT
 161 CCACCTATGTAACAAGGCACCGCTAAGCAAGCATTGTCTGTGCCATAACACAGTACTAGACCACTTTCTTACTTCTCTTT
 241 GGGTTGTCTTTCTCCTCTCCTATATCCATTTCTTCCTTTTCCAATTTCATTGGTTTTCTCTAAACAGTGCTCCATTTTAT
 321 TTTGTTGGTGTTTCAGATGGGCAGTGTTATGGCTACGTGATATTTGAAGGGAAGGATAAGTGTTGCTTTCAGTAGTTATT
 401 GCCAATATTGTTGTTGGTCAATGGCTTGAAGATAAACTTTCTAATAATTATTATTTCTTTGAGTAGCTCAGACTTGGTTT
 481 TGCCAAAACTCTTGGTAATTTTTGAAGATAGACTGTCTTATCACCAAGGAAATTTATACAAATTAAGACTAACTTTCTTG
 561 GAATTCACTATTCTGGCAATAAATTTTGGTAGACTAATACAGTACAGCTAGACCCAGAAATTTGGAAGGCTGTAGATCAG
 641 AGGTTCTAGTTCCCTTTCCCTCCTTTTATATCCTCCTCTCCTTGAGTAATGAAGTGACCAGCCTGTGTAGTGTGACAAAC
 721 GTGTCTCATTCAGCAGGAAAAACTAATGATATGGATCATCACCCAGATTCTCTCACTTGGTACCAGCATTTCTGTAGGTA
 801 TTAGAGAAGAGTTCTAAGTTTTCTAAACCTTAACTGTTCCTTAAGGATTTTAGCCAGTATTTTAATAGAACATGATTAAT
 881 GAAAGTGACAAATTTTAAATTTTCTCTAATAGTCCTCATCATAAACTTTTTAAAGGAAAATAAGCAAACTAAAAAGAACA
 961 TTGGTTTAGATAAATACTTATACTTTGCAAAGTCAAAAATGGCTTGATTTTTGGAAACAATATAGAGGTATTCATATTTA
1041 AATGAGGGTTTACATTTGTTTTGTTTTGTAACCGTTAAAAAGAAGTTGTTTCCAGCTAATTATTGTGGTGTACTATATTT
1121 GTGAGCCTAGGGTAGGGGCACTGCTGCAACTTCTGCTTTCATCCCATGCCTCATCAATGAGGAAAGGGAACAAAGTGTAT
1201 AAAACTGCCACAATTGTATTTTAATTTTGAGGTATGATATTTTCAGATATTTCATAATTTCTAACCTCTGTTCTCTCAGT
1281 AAACAGAATGTCTGATCGATCATGCAGATACAATGTTGGTATTTGAGAGGTTAGTTTTTTTCCTACACTTTTTTTTGCCA
1361 ACTGACTTAACAACATTGCTGTCAGGTGGAAATTTCAAGCACTTTTGCACATTTAGTTCAGTGTTTGTTGAGAATCCATG
1441 GCTTAACCCACTTGTTTTGCTATTTTTTTCTTTGCTTTTAATTTTCCCCATCTGATTTTATCTCTGCGTTTCAGTGACCT
1521 ACCTTAAAACAACACACGAGAAGAGTTAAACTGGGTTCATTTTAATGATCAATTTACCTGCATATAAAATTTATTTTTAA
1601 TCAAGCTGATCTTAATGTATATAATCATTCTATTTGCTTTATTATCGGTGCAGGTAGGTCATTAACACCACTTCTTTTCA
1681 TCTGTACCACACCCTGGTGAAACCTTTGAAGACATAAAAAAAACCTGTCTGAGATGTTCTTTCTACCAATCTATATGTCT
1761 TTCGGTTATCAAGTGTTTCTGCATGGTAATGTCATGTAAATGCTGATATTGATTTCACTGGTCCATCTATATTTAAAACG
1841 TGCAAGAAAAAAATAAAATACTCTGCTCTAGCAAGTTTTGTGTAACAAAGGCATATCGTCATGTTAATAAATTTAAAACA
1921 TCATTCGTATAAAATATTTTAATTTTCTTGTATTTCATTTAGACCCAAGAACATGCTGACCAATGTGTTCTATATGTAAA
2001 CTACAAATTCTATGGTAGCTTTGTTGTATATTATTGTAAAATTATTTTAATAAGTCATGGGGATGACAATTTGATTATTA
2081 CAATTTAGTTTTCAGTAATCAAAAAGATTTCTATGAATTCTAAAAAATATTTTTTTCTATGAAATTACTAGTGCCCAGCT
2161 GTAGAATCTACCTTAGGTAGATGATCCCTAGACATACGTTGGTTTTGAGGGCTATTCAGCCATTCCATTTTACTCTCTAT
2241 TTAAAGGCCGTGAGCAAGCTTGTCATGAGCAAATATGTCAAGGGAGTCAATTTCTGACCAATCAAGTACACTAAATTAGA
2321 ATATTTTTAAAGTATGTAACATTCCCAGTTTCAGCCACAATTTAGCCAAGAATAAGATAAAAACTTGAATAAGAAGTAAG
2401 TAGCATAAATCAGTATTTAACCTAAAATTACATATTTGAAACAGAAGATATTATGTTATGCTCAGTAAATAATTAAGAGA
2481 TGGCATTGTGTAAGAAGGAGCCCTAGACTGAAAGTCAAGACATCTGAATTTCAGGCTGGAAAACTATCAGTATGATCTCA
2561 GCCTCAGTTCTCTTGTCTGTAAAATGGAAGAACTGGATTAGGCAGTTTGTAAGATTCCTCCTAACTTTCACAGTCGATGA
2641 CAAGATTGTCTTTTTATCTGATATTTTGAAGGGTATATTGCTTTGAAGTAAGTCTCAATAAGGCAATATATTTTAGGGCA
2721 TCTTTCTTCTTATCTCTGACAGTGTTCTTAAAATTATTTGAATATCATAAGAGCCTTGGTGTCTGTCCTAATTCCTTTCT
2801 CACTCACCGATGCTGAATACCCAGTTGAATCAAACTGTCAACCTACCAAAAACGATATTGTGGCTTATGGGTATTGCTGT
2881 CTCATTCTTGGTATATTCTTGTGTTAACTGCCCATTGGCCTGAAAATACTCATTGTAAGCCTGAAAAAAAAAATCTTTCC
2961 CACTGTTTTTTCTGCTTGTTGTAAGAATCAAATGAAATAATGTATGTGAAAGCACCTTGTAAACTGTAACCTATCAATGT
3041 AAAATGTTAAGGTGTGTTGTTATTTCATTAATTACTTCTTTGTTTAGAATGGAATTTCCTATGCACTACTGTAGCTAGGA
3121 AATGCTGAAAACAACTGTGTTTTTTAATTAATCAATAACTGCAAAATTAAAGTACCTTCAATGGATAAGACAAAAAAAAA
3201 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gggagUUUUUCCUUCGUGAAa 5'
               |||    |||||||| 
Target 5' ggtggAAATTTCAAGCACTTt 3'
1385 - 1405 148.00 -9.60
2
miRNA  3' ggGAGUUUUUCCU--UCGUGAAa 5'
            ||||   :| |  ||||:|| 
Target 5' ctCTCACTTGGTACCAGCATTTc 3'
770 - 792 133.00 -11.90
3
miRNA  3' ggGA-GUUUUUCCUUCGUGAaa 5'
            || :|||| ||||| |||  
Target 5' gtCTGTAAAATGGAAGAACTgg 3'
2575 - 2596 123.00 -11.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8638801 3 COSMIC
COSN30171857 6 COSMIC
COSN30158795 25 COSMIC
COSN31503637 48 COSMIC
COSN32053871 64 COSMIC
COSN1109248 69 COSMIC
COSN30512947 71 COSMIC
COSN30152670 84 COSMIC
COSN13563050 113 COSMIC
COSN30710108 117 COSMIC
COSN30145968 118 COSMIC
COSN30500267 123 COSMIC
COSN28858379 135 COSMIC
COSN31589689 150 COSMIC
COSN28890661 166 COSMIC
COSN15679982 226 COSMIC
COSN31607448 273 COSMIC
COSN8638802 285 COSMIC
COSN20090269 377 COSMIC
COSN31515369 458 COSMIC
COSN30109954 485 COSMIC
COSN31582926 623 COSMIC
COSN1461023 767 COSMIC
COSN31546382 813 COSMIC
COSN31489524 882 COSMIC
COSN25166405 1063 COSMIC
COSN31522781 1144 COSMIC
COSN31595598 1165 COSMIC
COSN31595152 1187 COSMIC
COSN31584901 1298 COSMIC
COSN31556708 1299 COSMIC
COSN30164571 1328 COSMIC
COSN31519418 1366 COSMIC
COSN31544473 1418 COSMIC
COSN6471072 1487 COSMIC
COSN30542187 1494 COSMIC
COSN31607839 1614 COSMIC
COSN193624 1734 COSMIC
COSN193625 1735 COSMIC
COSN28292703 1760 COSMIC
COSN10055045 1803 COSMIC
COSN31488307 1806 COSMIC
COSN24037783 1812 COSMIC
COSN31522770 1919 COSMIC
COSN31520540 1947 COSMIC
COSN31584691 1948 COSMIC
COSN8511889 1967 COSMIC
COSN31520796 1991 COSMIC
COSN31482991 2011 COSMIC
COSN31532701 2013 COSMIC
COSN31609278 2026 COSMIC
COSN31528510 2057 COSMIC
COSN31515165 2107 COSMIC
COSN8511890 2776 COSMIC
COSN5169990 2832 COSMIC
COSN19552239 2859 COSMIC
COSN31486548 2902 COSMIC
COSN8145851 2915 COSMIC
COSN29515201 2954 COSMIC
COSN31585737 2954 COSMIC
COSN31607270 2956 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1460716808 4 dbSNP
rs201502546 9 dbSNP
rs1223707258 12 dbSNP
rs1322367624 13 dbSNP
rs372591216 15 dbSNP
rs751130772 19 dbSNP
rs759526728 23 dbSNP
rs1316960018 29 dbSNP
rs764146524 30 dbSNP
rs1337968233 32 dbSNP
rs751434962 34 dbSNP
rs757079312 35 dbSNP
rs890130665 41 dbSNP
rs1330059845 43 dbSNP
rs532543813 45 dbSNP
rs1391332185 57 dbSNP
rs1007689780 58 dbSNP
rs1470367101 60 dbSNP
rs1405594102 61 dbSNP
rs1017358697 63 dbSNP
rs898951236 67 dbSNP
rs1350764269 72 dbSNP
rs1364179682 73 dbSNP
rs1225233203 74 dbSNP
rs754434068 75 dbSNP
rs1258231808 79 dbSNP
rs1311526670 81 dbSNP
rs1000629715 88 dbSNP
rs1460530376 88 dbSNP
rs1260856183 93 dbSNP
rs1210212867 96 dbSNP
rs1026596065 101 dbSNP
rs1353212368 103 dbSNP
rs1054460894 109 dbSNP
rs1238908695 110 dbSNP
rs950596113 112 dbSNP
rs781174593 113 dbSNP
rs1019116693 120 dbSNP
rs552754264 124 dbSNP
rs996272512 125 dbSNP
rs776407513 130 dbSNP
rs1313931318 140 dbSNP
rs865849992 143 dbSNP
rs1252774075 144 dbSNP
rs960030808 145 dbSNP
rs991937789 150 dbSNP
rs574076031 151 dbSNP
rs1240737145 153 dbSNP
rs1014600020 155 dbSNP
rs1447251518 162 dbSNP
rs1424991516 165 dbSNP
rs531802093 168 dbSNP
rs1349056332 169 dbSNP
rs1294502134 172 dbSNP
rs961975003 182 dbSNP
rs947485399 183 dbSNP
rs548510892 186 dbSNP
rs148489326 190 dbSNP
rs1427221933 194 dbSNP
rs978932965 210 dbSNP
rs1306921874 214 dbSNP
rs11552591 223 dbSNP
rs1327228550 233 dbSNP
rs1354735103 234 dbSNP
rs561017694 241 dbSNP
rs145309062 243 dbSNP
rs917809179 248 dbSNP
rs1367210754 253 dbSNP
rs1444007606 255 dbSNP
rs924797874 263 dbSNP
rs600674 264 dbSNP
rs1169109678 265 dbSNP
rs1366571062 268 dbSNP
rs1475483570 269 dbSNP
rs927402262 277 dbSNP
rs936093902 278 dbSNP
rs1340018877 283 dbSNP
rs41301190 284 dbSNP
rs147184083 285 dbSNP
rs546549480 289 dbSNP
rs1359314465 291 dbSNP
rs539043967 294 dbSNP
rs1216394439 301 dbSNP
rs1040618451 303 dbSNP
rs766601722 319 dbSNP
rs1439775516 332 dbSNP
rs1225531408 345 dbSNP
rs555691182 357 dbSNP
rs1039146195 358 dbSNP
rs1303566131 365 dbSNP
rs1404149735 367 dbSNP
rs1363613095 374 dbSNP
rs369858724 375 dbSNP
rs575741094 377 dbSNP
rs1418183558 383 dbSNP
rs996338502 392 dbSNP
rs1481232150 400 dbSNP
rs1200576104 406 dbSNP
rs995020483 406 dbSNP
rs1488984427 408 dbSNP
rs777570175 415 dbSNP
rs1026128449 417 dbSNP
rs887908811 422 dbSNP
rs41301192 427 dbSNP
rs1388825781 433 dbSNP
rs1015062325 435 dbSNP
rs1449449075 451 dbSNP
rs1284222064 454 dbSNP
rs768124966 457 dbSNP
rs616790 462 dbSNP
rs991809496 473 dbSNP
rs1442865321 477 dbSNP
rs1353374943 486 dbSNP
rs1034932485 503 dbSNP
rs1326246165 509 dbSNP
rs959584544 515 dbSNP
rs1411165894 524 dbSNP
rs1470699541 530 dbSNP
rs1406345106 532 dbSNP
rs1175354277 538 dbSNP
rs1480278490 542 dbSNP
rs991492271 547 dbSNP
rs1423517212 564 dbSNP
rs572190612 568 dbSNP
rs1470815159 574 dbSNP
rs968807285 588 dbSNP
rs763512192 590 dbSNP
rs979266155 595 dbSNP
rs1232848407 596 dbSNP
rs924746869 598 dbSNP
rs1462757094 601 dbSNP
rs956212259 606 dbSNP
rs980637060 608 dbSNP
rs181252049 612 dbSNP
rs912140269 615 dbSNP
rs1310169834 616 dbSNP
rs1286125687 618 dbSNP
rs771229157 626 dbSNP
rs1224170214 633 dbSNP
rs755980472 638 dbSNP
rs879458438 640 dbSNP
rs564371968 643 dbSNP
rs1382897510 644 dbSNP
rs1047514793 650 dbSNP
rs111670440 655 dbSNP
rs746025056 659 dbSNP
rs1401697849 660 dbSNP
rs1056339895 667 dbSNP
rs1215922118 670 dbSNP
rs932243799 671 dbSNP
rs144259212 673 dbSNP
rs753872826 678 dbSNP
rs1006770729 685 dbSNP
rs1482382144 702 dbSNP
rs1244355953 703 dbSNP
rs1036141005 710 dbSNP
rs1316195272 712 dbSNP
rs1283721450 713 dbSNP
rs897550350 721 dbSNP
rs1022934630 722 dbSNP
rs1359468561 725 dbSNP
rs1160991050 734 dbSNP
rs576057119 745 dbSNP
rs151182362 749 dbSNP
rs1313773215 753 dbSNP
rs1000200159 754 dbSNP
rs544098010 756 dbSNP
rs1031716207 758 dbSNP
rs1412590224 759 dbSNP
rs969010382 763 dbSNP
rs1002126185 769 dbSNP
rs915137839 770 dbSNP
rs1032652862 777 dbSNP
rs868573371 788 dbSNP
rs1162983411 799 dbSNP
rs185551158 803 dbSNP
rs956160128 805 dbSNP
rs1264115354 815 dbSNP
rs988367377 816 dbSNP
rs200089197 818 dbSNP
rs913341114 823 dbSNP
rs967426258 825 dbSNP
rs548639457 829 dbSNP
rs188700583 837 dbSNP
rs1386099250 840 dbSNP
rs1434111001 860 dbSNP
rs1318838280 867 dbSNP
rs912070905 873 dbSNP
rs778570616 877 dbSNP
rs11552592 883 dbSNP
rs1241969379 889 dbSNP
rs1308819103 890 dbSNP
rs945092446 893 dbSNP
rs931959463 894 dbSNP
rs527877064 895 dbSNP
rs1295764231 907 dbSNP
rs1335717212 910 dbSNP
rs180770222 914 dbSNP
rs570811520 916 dbSNP
rs1266484145 921 dbSNP
rs920240570 922 dbSNP
rs539702047 924 dbSNP
rs1456395004 926 dbSNP
rs34428513 927 dbSNP
rs909439005 932 dbSNP
rs140086419 936 dbSNP
rs1428179911 937 dbSNP
rs1421814309 938 dbSNP
rs1036934018 942 dbSNP
rs569289313 943 dbSNP
rs1047463121 964 dbSNP
rs907611447 970 dbSNP
rs1268093981 978 dbSNP
rs939105819 982 dbSNP
rs1251406791 983 dbSNP
rs1203257146 984 dbSNP
rs1056284840 988 dbSNP
rs894982457 989 dbSNP
rs1284867113 995 dbSNP
rs1315658359 995 dbSNP
rs1225727570 1000 dbSNP
rs1346542509 1005 dbSNP
rs1236456796 1007 dbSNP
rs1385611164 1010 dbSNP
rs1475252517 1016 dbSNP
rs1012130319 1020 dbSNP
rs1189553832 1021 dbSNP
rs1013351442 1023 dbSNP
rs535232398 1026 dbSNP
rs1046142769 1029 dbSNP
rs778909729 1031 dbSNP
rs186137437 1035 dbSNP
rs903809893 1036 dbSNP
rs1398364515 1038 dbSNP
rs572197127 1039 dbSNP
rs534822439 1042 dbSNP
rs1480603177 1043 dbSNP
rs1032289636 1046 dbSNP
rs149885023 1049 dbSNP
rs1031663882 1053 dbSNP
rs1009443390 1055 dbSNP
rs1251216471 1072 dbSNP
rs1176108245 1073 dbSNP
rs1412751467 1074 dbSNP
rs546499624 1075 dbSNP
rs1203914908 1077 dbSNP
rs1356103060 1098 dbSNP
rs1324650171 1104 dbSNP
rs965143686 1111 dbSNP
rs956107870 1116 dbSNP
rs191904497 1122 dbSNP
rs1308411450 1130 dbSNP
rs1446127501 1131 dbSNP
rs1374773341 1132 dbSNP
rs1338881380 1137 dbSNP
rs1286638667 1139 dbSNP
rs1019084117 1144 dbSNP
rs923329420 1160 dbSNP
rs953406353 1162 dbSNP
rs965254831 1167 dbSNP
rs974977148 1171 dbSNP
rs1240179545 1174 dbSNP
rs1281698243 1179 dbSNP
rs909503739 1188 dbSNP
rs1343488586 1191 dbSNP
rs1244465137 1195 dbSNP
rs1183776472 1197 dbSNP
rs766113312 1199 dbSNP
rs751169865 1201 dbSNP
rs1199083769 1206 dbSNP
rs1028312827 1217 dbSNP
rs949508980 1227 dbSNP
rs1240080806 1230 dbSNP
rs1281684157 1244 dbSNP
rs1351537970 1247 dbSNP
rs1046193353 1248 dbSNP
rs1485685847 1249 dbSNP
rs1212442805 1250 dbSNP
rs1249127938 1255 dbSNP
rs952303175 1262 dbSNP
rs1472090443 1264 dbSNP
rs759122931 1270 dbSNP
rs1385417062 1271 dbSNP
rs1365255063 1274 dbSNP
rs1476924344 1287 dbSNP
rs1157921021 1288 dbSNP
rs1417816781 1289 dbSNP
rs1387050579 1298 dbSNP
rs983096726 1299 dbSNP
rs1366351145 1304 dbSNP
rs1171877853 1305 dbSNP
rs144903009 1307 dbSNP
rs1436625292 1309 dbSNP
rs41301194 1312 dbSNP
rs145166827 1314 dbSNP
rs893437271 1320 dbSNP
rs916375894 1328 dbSNP
rs184157822 1330 dbSNP
rs1294658814 1331 dbSNP
rs1043602055 1336 dbSNP
rs1355733699 1341 dbSNP
rs1329656026 1348 dbSNP
rs1020844174 1349 dbSNP
rs1297317650 1349 dbSNP
rs903758103 1350 dbSNP
rs935276126 1358 dbSNP
rs1350734808 1382 dbSNP
rs1367358479 1396 dbSNP
rs1235826458 1404 dbSNP
rs528980989 1412 dbSNP
rs571336316 1417 dbSNP
rs1053026482 1423 dbSNP
rs891811317 1425 dbSNP
rs1008904745 1449 dbSNP
rs1480026238 1455 dbSNP
rs1195957679 1456 dbSNP
rs371253249 1457 dbSNP
rs1387969748 1463 dbSNP
rs1169237567 1467 dbSNP
rs1030396321 1469 dbSNP
rs1252254784 1471 dbSNP
rs562208668 1475 dbSNP
rs1197951493 1476 dbSNP
rs1193377339 1481 dbSNP
rs7528226 1483 dbSNP
rs17131308 1487 dbSNP
rs1222964390 1490 dbSNP
rs1027846364 1491 dbSNP
rs186740577 1503 dbSNP
rs756081085 1505 dbSNP
rs983715234 1508 dbSNP
rs777544301 1509 dbSNP
rs1277874117 1515 dbSNP
rs550801000 1518 dbSNP
rs1389562891 1520 dbSNP
rs1283787068 1524 dbSNP
rs1014561880 1527 dbSNP
rs960361602 1530 dbSNP
rs1347574226 1531 dbSNP
rs41301196 1538 dbSNP
rs1300066442 1539 dbSNP
rs138917925 1553 dbSNP
rs775844631 1556 dbSNP
rs979659709 1570 dbSNP
rs772370368 1573 dbSNP
rs935221371 1579 dbSNP
rs1052312384 1580 dbSNP
rs1053499568 1581 dbSNP
rs893479108 1607 dbSNP
rs539655245 1611 dbSNP
rs945029918 1616 dbSNP
rs944708046 1618 dbSNP
rs1257596165 1622 dbSNP
rs1040403189 1624 dbSNP
rs1197002271 1635 dbSNP
rs900565802 1646 dbSNP
rs996293749 1647 dbSNP
rs192041352 1648 dbSNP
rs1353878217 1649 dbSNP
rs887950270 1651 dbSNP
rs1365379769 1657 dbSNP
rs1281278805 1658 dbSNP
rs1375532456 1685 dbSNP
rs568865971 1688 dbSNP
rs1454272320 1689 dbSNP
rs41301198 1697 dbSNP
rs960983575 1704 dbSNP
rs1469653820 1706 dbSNP
rs112374386 1708 dbSNP
rs1414312671 1715 dbSNP
rs1008061044 1716 dbSNP
rs1013658229 1716 dbSNP
rs1016328089 1716 dbSNP
rs534388713 1717 dbSNP
rs1176960649 1724 dbSNP
rs963722361 1724 dbSNP
rs1260985500 1726 dbSNP
rs972077631 1729 dbSNP
rs1172677557 1732 dbSNP
rs1023325866 1747 dbSNP
rs969522900 1750 dbSNP
rs558002501 1754 dbSNP
rs979219060 1755 dbSNP
rs1286190049 1759 dbSNP
rs1166102399 1765 dbSNP
rs1352282551 1780 dbSNP
rs1306412921 1797 dbSNP
rs776990849 1799 dbSNP
rs1397061610 1801 dbSNP
rs925083855 1806 dbSNP
rs956541962 1810 dbSNP
rs1301960635 1813 dbSNP
rs1447678740 1819 dbSNP
rs1320797199 1830 dbSNP
rs1420872517 1837 dbSNP
rs41301200 1840 dbSNP
rs1156909525 1841 dbSNP
rs1446582466 1844 dbSNP
rs1414795616 1847 dbSNP
rs1181510518 1850 dbSNP
rs1385689200 1853 dbSNP
rs1363317014 1859 dbSNP
rs1382273628 1861 dbSNP
rs11552593 1863 dbSNP
rs1482124389 1865 dbSNP
rs1243662294 1869 dbSNP
rs1297171127 1876 dbSNP
rs938167558 1881 dbSNP
rs1232229534 1893 dbSNP
rs912465834 1894 dbSNP
rs1273440173 1898 dbSNP
rs537375077 1899 dbSNP
rs943991723 1902 dbSNP
rs1226281720 1910 dbSNP
rs1377383139 1911 dbSNP
rs41301202 1924 dbSNP
rs921968917 1928 dbSNP
rs537878145 1943 dbSNP
rs1360435445 1950 dbSNP
rs922556200 1951 dbSNP
rs1254254280 1952 dbSNP
rs41301204 1958 dbSNP
rs1188857656 1967 dbSNP
rs1420329481 1969 dbSNP
rs1422253418 1972 dbSNP
rs887899464 1982 dbSNP
rs11552594 1988 dbSNP
rs1158898227 2003 dbSNP
rs555433476 2011 dbSNP
rs1036563480 2018 dbSNP
rs115681692 2019 dbSNP
rs1488494863 2043 dbSNP
rs1013858035 2050 dbSNP
rs1005357040 2053 dbSNP
rs1455866092 2058 dbSNP
rs1218797452 2062 dbSNP
rs1301611791 2067 dbSNP
rs1399365451 2068 dbSNP
rs1308871884 2082 dbSNP
rs1258371000 2083 dbSNP
rs1023695318 2084 dbSNP
rs1219631878 2089 dbSNP
rs768652258 2094 dbSNP
rs969089930 2109 dbSNP
rs1276802195 2111 dbSNP
rs377644515 2113 dbSNP
rs899231875 2114 dbSNP
rs1293487032 2127 dbSNP
rs1292989427 2128 dbSNP
rs1456503061 2129 dbSNP
rs1356486855 2130 dbSNP
rs1032051002 2131 dbSNP
rs564374369 2133 dbSNP
rs370944275 2135 dbSNP
rs1357021063 2140 dbSNP
rs993947559 2142 dbSNP
rs956490015 2151 dbSNP
rs773568951 2158 dbSNP
rs970683959 2176 dbSNP
rs987915104 2179 dbSNP
rs1433674327 2180 dbSNP
rs1266648450 2183 dbSNP
rs912413633 2198 dbSNP
rs571852580 2199 dbSNP
rs1258231084 2202 dbSNP
rs1197648106 2204 dbSNP
rs1317634655 2211 dbSNP
rs1256526704 2212 dbSNP
rs959833532 2218 dbSNP
rs1313279761 2222 dbSNP
rs148172520 2237 dbSNP
rs1211731654 2240 dbSNP
rs1332243171 2242 dbSNP
rs1259843795 2247 dbSNP
rs1471765577 2250 dbSNP
rs1176982380 2251 dbSNP
rs1466411498 2252 dbSNP
rs915014669 2253 dbSNP
rs1173878374 2263 dbSNP
rs1420294599 2266 dbSNP
rs1238288539 2271 dbSNP
rs761933264 2277 dbSNP
rs1456155477 2282 dbSNP
rs1244652518 2286 dbSNP
rs975362301 2306 dbSNP
rs1202534882 2307 dbSNP
rs966478461 2330 dbSNP
rs1231739022 2338 dbSNP
rs1310043922 2361 dbSNP
rs1355899466 2361 dbSNP
rs533341480 2366 dbSNP
rs922273422 2368 dbSNP
rs543753117 2372 dbSNP
rs1401252000 2380 dbSNP
rs1300967602 2382 dbSNP
rs1375340127 2385 dbSNP
rs931997579 2388 dbSNP
rs1380894006 2390 dbSNP
rs41301206 2394 dbSNP
rs1312898898 2398 dbSNP
rs1437348378 2404 dbSNP
rs374010719 2405 dbSNP
rs911128540 2410 dbSNP
rs909284723 2415 dbSNP
rs1255943142 2416 dbSNP
rs1038206392 2422 dbSNP
rs899282912 2424 dbSNP
rs1287439953 2430 dbSNP
rs1215982137 2433 dbSNP
rs993591557 2444 dbSNP
rs1407539727 2445 dbSNP
rs1286118405 2450 dbSNP
rs759210843 2452 dbSNP
rs1297243313 2456 dbSNP
rs1373853042 2460 dbSNP
rs1310281838 2464 dbSNP
rs1401675719 2477 dbSNP
rs1225232888 2487 dbSNP
rs767120230 2494 dbSNP
rs1417253929 2497 dbSNP
rs1392282638 2501 dbSNP
rs1163440680 2507 dbSNP
rs34554723 2507 dbSNP
rs896667189 2525 dbSNP
rs529522319 2528 dbSNP
rs41301208 2529 dbSNP
rs1366407278 2556 dbSNP
rs1003530475 2595 dbSNP
rs1038726333 2596 dbSNP
rs182915082 2600 dbSNP
rs905483114 2602 dbSNP
rs1264445483 2612 dbSNP
rs528220261 2613 dbSNP
rs1193592821 2616 dbSNP
rs1011525566 2630 dbSNP
rs1292073657 2636 dbSNP
rs1022468240 2637 dbSNP
rs1355893296 2638 dbSNP
rs1263968694 2639 dbSNP
rs1482113375 2645 dbSNP
rs967239400 2646 dbSNP
rs1233646134 2647 dbSNP
rs1000530120 2649 dbSNP
rs141828897 2658 dbSNP
rs1395032026 2661 dbSNP
rs34882982 2668 dbSNP
rs1323623968 2673 dbSNP
rs892191337 2674 dbSNP
rs1404309612 2675 dbSNP
rs186836627 2678 dbSNP
rs1172379204 2684 dbSNP
rs1467458662 2686 dbSNP
rs1019371726 2698 dbSNP
rs1424815724 2699 dbSNP
rs41301210 2701 dbSNP
rs985073397 2707 dbSNP
rs975689822 2709 dbSNP
rs1474699295 2710 dbSNP
rs1249025371 2713 dbSNP
rs1199667047 2717 dbSNP
rs1028232041 2718 dbSNP
rs1451115105 2719 dbSNP
rs952765152 2723 dbSNP
rs1251305947 2724 dbSNP
rs1407697645 2734 dbSNP
rs911170791 2735 dbSNP
rs1257160547 2738 dbSNP
rs1169362098 2742 dbSNP
rs1216626467 2750 dbSNP
rs1347023977 2764 dbSNP
rs1435044306 2765 dbSNP
rs984773056 2768 dbSNP
rs1328863189 2773 dbSNP
rs909232456 2774 dbSNP
rs1447104660 2779 dbSNP
rs940729096 2780 dbSNP
rs1170391425 2782 dbSNP
rs1323582366 2788 dbSNP
rs41301212 2797 dbSNP
rs1427787545 2804 dbSNP
rs1173682712 2808 dbSNP
rs918040084 2809 dbSNP
rs554089542 2810 dbSNP
rs1180628357 2819 dbSNP
rs1458368006 2822 dbSNP
rs1202182031 2825 dbSNP
rs1047869693 2842 dbSNP
rs1279169763 2843 dbSNP
rs1218600980 2850 dbSNP
rs1342211553 2854 dbSNP
rs557144876 2855 dbSNP
rs905431655 2858 dbSNP
rs1328877583 2859 dbSNP
rs1440398140 2864 dbSNP
rs939370695 2870 dbSNP
rs1214029382 2871 dbSNP
rs936942433 2877 dbSNP
rs1055124820 2882 dbSNP
rs567559080 2890 dbSNP
rs1053354377 2897 dbSNP
rs150607894 2903 dbSNP
rs760159265 2910 dbSNP
rs1252689472 2912 dbSNP
rs1011159056 2915 dbSNP
rs555753348 2919 dbSNP
rs796884226 2927 dbSNP
rs1400917252 2933 dbSNP
rs1019356036 2934 dbSNP
rs1469183026 2936 dbSNP
rs1196113971 2939 dbSNP
rs900950229 2940 dbSNP
rs1022944350 2944 dbSNP
rs1175715045 2944 dbSNP
rs902703615 2944 dbSNP
rs1209214072 2951 dbSNP
rs1484641291 2962 dbSNP
rs1051529 2963 dbSNP
rs1246700216 2964 dbSNP
rs1474161031 2968 dbSNP
rs879332990 2969 dbSNP
rs1419810481 2974 dbSNP
rs996677186 2982 dbSNP
rs572333888 2985 dbSNP
rs745687591 2989 dbSNP
rs1216615078 2996 dbSNP
rs1352350363 3003 dbSNP
rs541167581 3006 dbSNP
rs1229704616 3008 dbSNP
rs1051544 3015 dbSNP
rs1029390891 3016 dbSNP
rs369254234 3017 dbSNP
rs565485368 3017 dbSNP
rs369459567 3023 dbSNP
rs557828879 3025 dbSNP
rs985566079 3032 dbSNP
rs984053579 3037 dbSNP
rs962654302 3041 dbSNP
rs1016241277 3045 dbSNP
rs962041679 3047 dbSNP
rs766211674 3053 dbSNP
rs929816502 3064 dbSNP
rs577671491 3074 dbSNP
rs918002124 3079 dbSNP
rs949530027 3080 dbSNP
rs1181063731 3081 dbSNP
rs981268119 3083 dbSNP
rs1265172793 3084 dbSNP
rs928067688 3107 dbSNP
rs13376116 3110 dbSNP
rs1055579376 3112 dbSNP
rs895166369 3113 dbSNP
rs1321937310 3133 dbSNP
rs556807537 3134 dbSNP
rs946679661 3135 dbSNP
rs1232986017 3136 dbSNP
rs1353970952 3139 dbSNP
rs1280600384 3141 dbSNP
rs1272764426 3150 dbSNP
rs1401182734 3161 dbSNP
rs190169204 3163 dbSNP
rs936890662 3177 dbSNP
rs1215904344 3182 dbSNP
rs573933050 3184 dbSNP
rs1044011964 3185 dbSNP
rs902755730 3186 dbSNP
rs999688529 3192 dbSNP
rs1164358055 3193 dbSNP
rs1350614472 3193 dbSNP
rs1459629122 3194 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 5567.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gggagUUUUUCCUUCGUGAAa 5'
               |||    |||||||| 
Target 5' gguggAAAUUUCAAGCACUUu 3'
4 - 24
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001242857 | 3UTR | AGGUGGAAAUUUCAAGCACUUUUGCACAUUUAGUUCAGUGUUUGUUGAGAAUCCAUGGCUUAACCCACUUGUUUUGCUAUUUUUUUCUUUGCUUUUAAUUUUCCCCAUCUGAUUUUAUCUCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000370689.2 | 3UTR | UCAGGUGGAAAUUUCAAGCACUUUUGCACAUUUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease -0.458 1.1e-2 -0.442 1.3e-2 25 Click to see details
GSE21687 Ependynoma primary tumors 0.207 5.0e-2 0.207 5.0e-2 64 Click to see details
GSE27834 Pluripotent stem cells 0.353 9.0e-2 0.362 8.4e-2 16 Click to see details
GSE28260 Renal cortex and medulla 0.387 9.6e-2 0.264 1.9e-1 13 Click to see details
GSE38226 Liver fibrosis -0.235 1.5e-1 -0.409 3.3e-2 21 Click to see details
GSE26953 Aortic valvular endothelial cells -0.155 2.3e-1 -0.103 3.2e-1 24 Click to see details
GSE21849 B cell lymphoma -0.128 2.5e-1 -0.138 2.4e-1 29 Click to see details
GSE17498 Multiple myeloma -0.106 2.6e-1 -0.094 2.8e-1 40 Click to see details
GSE19350 CNS germ cell tumors -0.139 3.3e-1 -0.080 4.0e-1 12 Click to see details
GSE17306 Multiple myeloma -0.055 3.5e-1 -0.055 3.5e-1 49 Click to see details
GSE32688 Pancreatic cancer 0.066 3.6e-1 0.026 4.4e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells 0.067 3.8e-1 0.414 2.5e-2 23 Click to see details
GSE28544 Breast cancer 0.062 3.9e-1 0.578 1.5e-3 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.057 3.9e-1 0.211 1.6e-1 25 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.111 4.0e-1 -0.077 4.3e-1 8 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.06 4.0e-1 -0.110 3.2e-1 20 Click to see details
GSE14794 Lymphoblastoid cells 0.02 4.3e-1 0.104 1.6e-1 90 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
0.02 4.3e-1 0.104 1.6e-1 90 Click to see details
0.02 4.3e-1 0.104 1.6e-1 90 Click to see details
0.02 4.3e-1 0.104 1.6e-1 90 Click to see details
0.02 4.3e-1 0.104 1.6e-1 90 Click to see details
423 hsa-miR-520e Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT006513 CD46 CD46 molecule 4 1
MIRT007338 PFKP phosphofructokinase, platelet 5 9
MIRT052929 MAP3K14 mitogen-activated protein kinase kinase kinase 14 3 1
MIRT052966 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 3 1
MIRT057396 TNKS2 tankyrase 2 2 2
MIRT061195 MED17 mediator complex subunit 17 2 2
MIRT061366 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT063068 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT064717 CCND2 cyclin D2 2 2
MIRT065871 GDF11 growth differentiation factor 11 2 2
MIRT066869 TMEM19 transmembrane protein 19 2 2
MIRT067243 FOXJ2 forkhead box J2 2 2
MIRT070853 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071388 CMPK1 cytidine/uridine monophosphate kinase 1 2 6
MIRT075787 KIAA0513 KIAA0513 2 6
MIRT077844 MINK1 misshapen like kinase 1 2 2
MIRT078824 UNK unkempt family zinc finger 2 2
MIRT079424 FOXK2 forkhead box K2 2 4
MIRT080190 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT083973 RAB22A RAB22A, member RAS oncogene family 2 4
MIRT084955 BACH1 BTB domain and CNC homolog 1 2 2
MIRT093815 KLF3 Kruppel like factor 3 2 2
MIRT093953 SLAIN2 SLAIN motif family member 2 2 2
MIRT108662 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT112100 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT122376 RGMB repulsive guidance molecule family member b 2 4
MIRT124139 GINS4 GINS complex subunit 4 2 4
MIRT130113 TXNIP thioredoxin interacting protein 2 8
MIRT138705 MPP5 membrane palmitoylated protein 5 2 2
MIRT147298 KPNA2 karyopherin subunit alpha 2 2 10
MIRT155916 SIK1 salt inducible kinase 1 2 2
MIRT165910 CREBRF CREB3 regulatory factor 2 2
MIRT173700 PRPF4 pre-mRNA processing factor 4 2 2
MIRT178673 FAM102B family with sequence similarity 102 member B 2 2
MIRT187262 DAZAP2 DAZ associated protein 2 2 10
MIRT199118 ZNF532 zinc finger protein 532 2 2
MIRT199293 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT200934 ZNF264 zinc finger protein 264 2 6
MIRT201032 ZNF805 zinc finger protein 805 2 2
MIRT213215 REST RE1 silencing transcription factor 2 6
MIRT216435 SERF1A small EDRK-rich factor 1A 2 2
MIRT216460 SERF1B small EDRK-rich factor 1B 2 2
MIRT242210 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT242366 IGF1R insulin like growth factor 1 receptor 2 2
MIRT242511 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 2
MIRT243435 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT244600 HOOK3 hook microtubule tethering protein 3 2 2
MIRT281001 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT302451 CLIP4 CAP-Gly domain containing linker protein family member 4 2 2
MIRT321784 FZD6 frizzled class receptor 6 2 8
MIRT322534 HMBOX1 homeobox containing 1 2 2
MIRT325522 PTPDC1 protein tyrosine phosphatase domain containing 1 2 2
MIRT356941 FEM1C fem-1 homolog C 2 8
MIRT383608 POU2F1 POU class 2 homeobox 1 2 2
MIRT441407 FAM9C family with sequence similarity 9 member C 2 2
MIRT442447 FGF7 fibroblast growth factor 7 2 6
MIRT443074 ABLIM1 actin binding LIM protein 1 2 2
MIRT444420 EMC1 ER membrane protein complex subunit 1 2 2
MIRT446616 HIP1 huntingtin interacting protein 1 2 4
MIRT446807 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT448351 TSR1 TSR1, ribosome maturation factor 2 6
MIRT448743 ITGA2 integrin subunit alpha 2 2 2
MIRT449158 SORCS2 sortilin related VPS10 domain containing receptor 2 2 2
MIRT449251 MICA MHC class I polypeptide-related sequence A 2 2
MIRT450842 IFFO1 intermediate filament family orphan 1 2 2
MIRT450927 CADM2 cell adhesion molecule 2 2 2
MIRT450963 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT461251 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor 2 6
MIRT463601 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT467913 SLC22A23 solute carrier family 22 member 23 2 2
MIRT471996 NR1D2 nuclear receptor subfamily 1 group D member 2 2 2
MIRT473611 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT474724 KIF13A kinesin family member 13A 2 6
MIRT476988 FAM73B mitoguardin 2 2 2
MIRT477098 FAM160B1 family with sequence similarity 160 member B1 2 6
MIRT477269 ERGIC2 ERGIC and golgi 2 2 2
MIRT478732 CSNK1A1 casein kinase 1 alpha 1 2 6
MIRT479996 CAPRIN2 caprin family member 2 2 4
MIRT480660 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480836 BLCAP bladder cancer associated protein 2 10
MIRT481755 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT484830 ZNFX1 zinc finger NFX1-type containing 1 2 2
MIRT484929 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485347 MYO1D myosin ID 2 2
MIRT485831 ARID4B AT-rich interaction domain 4B 2 4
MIRT486013 LPAR2 lysophosphatidic acid receptor 2 2 2
MIRT493131 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT494082 DUSP2 dual specificity phosphatase 2 2 4
MIRT496048 MORC1 MORC family CW-type zinc finger 1 2 2
MIRT497456 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT498047 SNX5 sorting nexin 5 2 6
MIRT500881 SUCO SUN domain containing ossification factor 2 4
MIRT501398 RBBP6 RB binding protein 6, ubiquitin ligase 2 8
MIRT503790 ZNF12 zinc finger protein 12 2 6
MIRT504083 C9orf40 chromosome 9 open reading frame 40 2 6
MIRT504278 PARP1 poly(ADP-ribose) polymerase 1 2 6
MIRT505169 YOD1 YOD1 deubiquitinase 2 4
MIRT505212 UBN2 ubinuclein 2 2 8
MIRT505985 RAB11FIP1 RAB11 family interacting protein 1 2 4
MIRT506266 PDPK1 3-phosphoinositide dependent protein kinase 1 2 2
MIRT506975 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT507216 FZD9 frizzled class receptor 9 2 6
MIRT507422 ELK4 ELK4, ETS transcription factor 2 4
MIRT508560 CEP72 centrosomal protein 72 2 4
MIRT508729 ZNF682 zinc finger protein 682 2 4
MIRT508820 GPR155 G protein-coupled receptor 155 2 2
MIRT509114 BMP8B bone morphogenetic protein 8b 2 6
MIRT509421 MCM7 minichromosome maintenance complex component 7 2 6
MIRT509729 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT510013 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT510210 ZNF317 zinc finger protein 317 2 4
MIRT511304 KIAA1551 KIAA1551 2 2
MIRT511403 IFNAR2 interferon alpha and beta receptor subunit 2 2 6
MIRT511540 HMGB1 high mobility group box 1 2 6
MIRT512023 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT512967 PPP1R14C protein phosphatase 1 regulatory inhibitor subunit 14C 2 4
MIRT513811 NFIB nuclear factor I B 2 2
MIRT514121 SERF2 small EDRK-rich factor 2 2 2
MIRT514304 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514466 FANCA Fanconi anemia complementation group A 2 2
MIRT515189 CRCP CGRP receptor component 2 2
MIRT515559 TMEM134 transmembrane protein 134 2 2
MIRT515916 MFAP2 microfibril associated protein 2 2 4
MIRT516044 MED18 mediator complex subunit 18 2 2
MIRT516355 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT516543 MIXL1 Mix paired-like homeobox 2 2
MIRT516783 PTRF caveolae associated protein 1 2 4
MIRT517004 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT517171 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517244 PRIM1 DNA primase subunit 1 2 4
MIRT518301 ZNF514 zinc finger protein 514 2 4
MIRT518452 KIF6 kinesin family member 6 2 2
MIRT518683 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT518788 MED16 mediator complex subunit 16 2 4
MIRT518847 NEK8 NIMA related kinase 8 2 2
MIRT518956 GRK7 G protein-coupled receptor kinase 7 2 2
MIRT519256 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT519416 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519532 TMEM38A transmembrane protein 38A 2 2
MIRT520066 YIPF4 Yip1 domain family member 4 2 2
MIRT520140 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT520294 UBXN2A UBX domain protein 2A 2 2
MIRT520557 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT520818 TAOK1 TAO kinase 1 2 2
MIRT520994 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521224 SBNO1 strawberry notch homolog 1 2 2
MIRT521533 QSOX1 quiescin sulfhydryl oxidase 1 2 4
MIRT522156 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522206 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT522517 MFN1 mitofusin 1 2 2
MIRT522954 IPO9 importin 9 2 2
MIRT523067 HYPK huntingtin interacting protein K 2 2
MIRT523424 GPR157 G protein-coupled receptor 157 2 4
MIRT523555 GIGYF1 GRB10 interacting GYF protein 1 2 6
MIRT523638 FOXK1 forkhead box K1 2 4
MIRT524236 DCTN6 dynactin subunit 6 2 2
MIRT524279 CYCS cytochrome c, somatic 2 2
MIRT524378 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524441 CNKSR3 CNKSR family member 3 2 2
MIRT524758 BCL2L2 BCL2 like 2 2 2
MIRT524967 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT525651 NHSL2 NHS like 2 2 2
MIRT525687 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT526623 NME6 NME/NM23 nucleoside diphosphate kinase 6 2 2
MIRT527536 DLGAP5 DLG associated protein 5 2 4
MIRT529523 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT529987 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT530134 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 2 2
MIRT530575 ABHD15 abhydrolase domain containing 15 2 2
MIRT530973 EXO5 exonuclease 5 2 4
MIRT531464 TNFRSF10B TNF receptor superfamily member 10b 2 4
MIRT531763 TXK TXK tyrosine kinase 2 4
MIRT532037 FHDC1 FH2 domain containing 1 2 2
MIRT532932 ZNF385A zinc finger protein 385A 2 2
MIRT534519 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT534615 RNASEH1 ribonuclease H1 2 4
MIRT534773 RASGEF1A RasGEF domain family member 1A 2 2
MIRT535257 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 4
MIRT535389 PER1 period circadian clock 1 2 2
MIRT536024 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT536112 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT536172 MAP1B microtubule associated protein 1B 2 3
MIRT536295 LIMA1 LIM domain and actin binding 1 2 2
MIRT536357 LEFTY1 left-right determination factor 1 2 2
MIRT536425 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT536548 KCNJ8 potassium voltage-gated channel subfamily J member 8 2 2
MIRT536616 IRF2 interferon regulatory factor 2 2 2
MIRT536630 INO80D INO80 complex subunit D 2 2
MIRT536868 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 2 2
MIRT536954 HAS3 hyaluronan synthase 3 2 2
MIRT536981 HABP4 hyaluronan binding protein 4 2 4
MIRT537247 GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 2 2
MIRT537434 FBXL7 F-box and leucine rich repeat protein 7 2 2
MIRT537550 ETNK1 ethanolamine kinase 1 2 2
MIRT537745 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537960 DPYSL2 dihydropyrimidinase like 2 2 2
MIRT538003 DPP8 dipeptidyl peptidase 8 2 2
MIRT538258 CUL3 cullin 3 2 4
MIRT538513 CLCN3 chloride voltage-gated channel 3 2 2
MIRT538583 CECR2 CECR2, histone acetyl-lysine reader 2 2
MIRT538647 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT538860 BTG1 BTG anti-proliferation factor 1 2 2
MIRT538911 BRI3BP BRI3 binding protein 2 2
MIRT539011 AVL9 AVL9 cell migration associated 2 2
MIRT539058 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 4
MIRT539102 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT539437 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT540262 FAM89A family with sequence similarity 89 member A 2 2
MIRT540376 MASTL microtubule associated serine/threonine kinase like 2 2
MIRT541293 GLO1 glyoxalase I 2 2
MIRT542129 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 2
MIRT542255 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT546546 SATB2 SATB homeobox 2 2 2
MIRT547480 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547639 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT547880 HSPA13 heat shock protein family A (Hsp70) member 13 2 2
MIRT548567 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 2 2
MIRT550865 SNAP47 synaptosome associated protein 47 2 4
MIRT552161 DAD1 defender against cell death 1 2 2
MIRT552191 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT553584 TMEM100 transmembrane protein 100 2 2
MIRT553680 TFAP4 transcription factor AP-4 2 4
MIRT554438 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554496 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT554758 RHOC ras homolog family member C 2 2
MIRT555452 POLR3A RNA polymerase III subunit A 2 2
MIRT556536 LIN52 lin-52 DREAM MuvB core complex component 2 2
MIRT557069 HOXB3 homeobox B3 2 2
MIRT557649 GATA6 GATA binding protein 6 2 2
MIRT560236 KLHL21 kelch like family member 21 2 4
MIRT561335 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT566274 PRRG4 proline rich and Gla domain 4 2 2
MIRT567080 KBTBD2 kelch repeat and BTB domain containing 2 2 2
MIRT567939 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT567980 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT568167 CCDC6 coiled-coil domain containing 6 2 2
MIRT571711 RPL17-C18orf32 RPL17-C18orf32 readthrough 2 2
MIRT571762 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT572197 C18orf32 chromosome 18 open reading frame 32 2 2
MIRT572664 AGMAT agmatinase 2 4
MIRT573696 RBM12B RNA binding motif protein 12B 2 2
MIRT574574 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT574731 HAUS8 HAUS augmin like complex subunit 8 2 2
MIRT575713 Map1b microtubule-associated protein 1B 2 3
MIRT608736 MYH9 myosin heavy chain 9 2 2
MIRT612599 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614251 WDR53 WD repeat domain 53 2 4
MIRT615164 SPIB Spi-B transcription factor 2 2
MIRT616160 TCEB1 elongin C 2 2
MIRT616799 FEM1A fem-1 homolog A 2 2
MIRT617866 ESR1 estrogen receptor 1 2 2
MIRT619829 POLM DNA polymerase mu 2 4
MIRT620966 TM4SF5 transmembrane 4 L six family member 5 2 2
MIRT625853 SLC35C2 solute carrier family 35 member C2 2 2
MIRT626209 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626918 HIST1H2BG histone cluster 1 H2B family member g 2 2
MIRT633110 CBX5 chromobox 5 2 2
MIRT634086 APOH apolipoprotein H 2 2
MIRT634943 GTF2H2C GTF2H2 family member C 2 4
MIRT640022 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
MIRT641694 SPCS1 signal peptidase complex subunit 1 2 2
MIRT645203 POLR3F RNA polymerase III subunit F 2 2
MIRT656319 MELK maternal embryonic leucine zipper kinase 2 2
MIRT659545 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT662395 ICA1L islet cell autoantigen 1 like 2 4
MIRT663613 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT663940 ZNF554 zinc finger protein 554 2 2
MIRT664216 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664382 CYB5A cytochrome b5 type A 2 2
MIRT673122 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT677143 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT677249 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT678736 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT679721 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT680362 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680689 ZNF785 zinc finger protein 785 2 2
MIRT680767 WDR73 WD repeat domain 73 2 2
MIRT681399 RMND1 required for meiotic nuclear division 1 homolog 2 2
MIRT681693 ABI2 abl interactor 2 2 2
MIRT681829 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT682320 RAB42 RAB42, member RAS oncogene family 2 2
MIRT683318 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683388 ESR2 estrogen receptor 2 2 2
MIRT683492 ZNF7 zinc finger protein 7 2 2
MIRT683524 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683875 OCIAD1 OCIA domain containing 1 2 2
MIRT683948 MYLK3 myosin light chain kinase 3 2 2
MIRT683977 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT684080 TLR7 toll like receptor 7 2 2
MIRT684133 CEP104 centrosomal protein 104 2 2
MIRT684197 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT684358 BCAS4 breast carcinoma amplified sequence 4 2 2
MIRT684492 GPR137B G protein-coupled receptor 137B 2 2
MIRT684574 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684617 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684648 PDE4C phosphodiesterase 4C 2 2
MIRT684713 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684742 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684787 MYO1F myosin IF 2 2
MIRT684919 CD28 CD28 molecule 2 2
MIRT685195 DCTN5 dynactin subunit 5 2 2
MIRT685248 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685316 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685351 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685519 MSH3 mutS homolog 3 2 2
MIRT685578 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685635 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685660 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685709 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685742 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685783 ZNF426 zinc finger protein 426 2 2
MIRT685883 RTN2 reticulon 2 2 2
MIRT685955 PTGIS prostaglandin I2 synthase 2 2
MIRT686106 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686156 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686283 WWC1 WW and C2 domain containing 1 2 2
MIRT686321 VPS53 VPS53, GARP complex subunit 2 2
MIRT686362 USP15 ubiquitin specific peptidase 15 2 2
MIRT686390 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686444 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686491 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686527 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686582 TMOD3 tropomodulin 3 2 2
MIRT686693 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686827 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686880 SLC1A5 solute carrier family 1 member 5 2 2
MIRT686914 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT686980 SERINC1 serine incorporator 1 2 2
MIRT687044 RNF115 ring finger protein 115 2 2
MIRT687079 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687254 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687596 MANEAL mannosidase endo-alpha like 2 2
MIRT687650 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687858 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687983 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688123 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688217 FKBP14 FK506 binding protein 14 2 2
MIRT688275 FAM213A family with sequence similarity 213 member A 2 2
MIRT688487 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688506 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688830 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT689174 ZNF665 zinc finger protein 665 2 2
MIRT689799 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689844 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690739 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690984 ZNF578 zinc finger protein 578 2 2
MIRT691076 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691333 KIAA1841 KIAA1841 2 2
MIRT691497 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691578 CCDC125 coiled-coil domain containing 125 2 2
MIRT691614 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692074 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692111 CXorf38 chromosome X open reading frame 38 2 4
MIRT692212 NOL9 nucleolar protein 9 2 2
MIRT692320 RFK riboflavin kinase 2 2
MIRT692382 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692443 METTL8 methyltransferase like 8 2 2
MIRT692478 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692546 PARD3 par-3 family cell polarity regulator 2 2
MIRT692607 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692788 SYNPO2L synaptopodin 2 like 2 2
MIRT692819 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692881 RBM41 RNA binding motif protein 41 2 2
MIRT692991 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT693140 THEM4 thioesterase superfamily member 4 2 2
MIRT693353 RNF34 ring finger protein 34 2 2
MIRT694113 ZNF446 zinc finger protein 446 2 2
MIRT694197 ZNF347 zinc finger protein 347 2 2
MIRT694663 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694817 STX4 syntaxin 4 2 2
MIRT694939 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695183 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695309 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT695663 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695836 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695928 ZNF174 zinc finger protein 174 2 2
MIRT695975 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696186 GNB5 G protein subunit beta 5 2 2
MIRT696447 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696863 UBOX5 U-box domain containing 5 2 2
MIRT696910 C14orf105 coiled-coil domain containing 198 2 2
MIRT697249 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697394 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697988 TSPAN6 tetraspanin 6 2 2
MIRT698334 TMEM127 transmembrane protein 127 2 2
MIRT699274 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699321 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699637 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699699 SF3B3 splicing factor 3b subunit 3 2 2
MIRT700048 RPL14 ribosomal protein L14 2 2
MIRT700106 RNF19B ring finger protein 19B 2 2
MIRT701114 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701298 NUDT3 nudix hydrolase 3 2 2
MIRT701579 MYPN myopalladin 2 2
MIRT702529 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT703095 GPRIN3 GPRIN family member 3 2 2
MIRT704114 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704149 DNAL1 dynein axonemal light chain 1 2 2
MIRT704201 LDHD lactate dehydrogenase D 2 2
MIRT704466 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT704767 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705088 C4orf29 abhydrolase domain containing 18 2 2
MIRT705353 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706109 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT706280 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706315 CCDC30 coiled-coil domain containing 30 2 2
MIRT706355 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT706407 HAS2 hyaluronan synthase 2 2 2
MIRT706438 LIAS lipoic acid synthetase 2 2
MIRT706518 MTMR9 myotubularin related protein 9 2 2
MIRT707592 PCNXL2 pecanex homolog 2 2 2
MIRT708374 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708452 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT709076 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT709541 ZBED1 zinc finger BED-type containing 1 2 2
MIRT709623 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT714310 ZNF454 zinc finger protein 454 2 2
MIRT715601 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT716544 GOLGA2 golgin A2 2 2
MIRT717807 FAM114A1 family with sequence similarity 114 member A1 2 2
MIRT719076 ACOX1 acyl-CoA oxidase 1 2 2
MIRT732364 ZBTB7A zinc finger and BTB domain containing 7A 3 1
MIRT734579 MTDH metadherin 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-520e Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-520e Cisplatin approved 84093 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-520e Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-520e Androstenedione+Anastrozole resistant cell line (MCF-7)

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