miRTarBase - #MIRT088230


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pre-miRNA Information
pre-miRNA hsa-mir-548x   
Genomic Coordinates chr21: 18686090 - 18686164
Description Homo sapiens miR-548x stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548x-5p
Sequence 8| UGCAAAAGUAAUUGCAGUUUUUG |30
Evidence Not_experimental
Experiments
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1339173470 13 dbSNP
rs1213127694 16 dbSNP
rs924142144 17 dbSNP
rs1220375299 23 dbSNP
Putative Targets

Gene Information
Gene Symbol GRAMD4   
Synonyms DIP, dA59H18.1, dJ439F8.1
Description GRAM domain containing 4
Transcript NM_015124   
Expression
Putative miRNA Targets on GRAMD4
3'UTR of GRAMD4
(miRNA target sites are highlighted)		 
>GRAMD4|NM_015124|3'UTR
   1 TATTGACTTGCCCAGGACGTTGCTGGAATTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTACGATTTGGTAGTGGA
  81 AACAATTGGACATCCTCATGAGCTTTTGCAATAATTCTCCTGGACCTGTGGTTCTATTGTGTTGACCTCTGCGTTTTATC
 161 GACCAAGAAGGGGCCAGGGCTCACAGGGACGGGGGTGCCCCTCTCCCACAGGGCACGTCAGGTGCCTCTGAGGGCCACCC
 241 GCAGACTGGGGGAGGGGGCAGAGGCCCTCGGGGGCCCGTGGAGAAGACACACAGGACCCCTGGCCCTGCCCTTCTCCGTT
 321 CCAGCCTGGACAGAGAAACCTCTCCAGCCACCCCAAGAGGTTCTCGCAACCTTGTGTCCCGCTCTCCAGAGGCCAGAAGC
 401 TCGTCCACCACCAAAGCCATAGCTGAAGAGTGCGGGGCCCTTCCTCCTGGGGACAGAAAGATGTCGTCAAGGAGGGACAT
 481 GGGGGCCTTTCACCAACCACCGAGAAACGGGCCTGGCGGCCCTCCTTCCTCTTACATGAGACCCTCCTGTGGCATTTGCC
 561 CTTGGTGCCGGGCTGGGGCCGGGCGCAGTGACCCTGCCTGCGCTCCACACTCGCTCCACGGGAACAGAGAGGGTGAGAAG
 641 GGCCCACCCCTCGCCTGCCCTCAGTGTCTTTGGTGGCACCTTCCTTGCTGGCCTCCAGGGCGCTCAGCACCGCGTCTGTA
 721 AGGGCCTGCCTGCTGCTCTCGGCCTGACACGCCGGCCAGGAGGTCTGTAGCTGGGGACCAGTAAGGGCACAGGATGGTGC
 801 AGGTAAAAGCACATCTTTCTCACACTTTGCTCTTTGGAAGGCCCAGGAGAACATCCGCGAAGGCTGTTGGAGGTGCTCCG
 881 AGCACTGTGGCATGTCTGGCACATGGCCCCCAGGCTGCGGTTGCCTGGGTTGGTTGGGGGAGGAAGTGGGGAGGAGTGTT
 961 CCGGGACCATGGTGGCCCAGGCTGCAGCCGCCTTTGGGCCATCCGAGAGGCTCTGGCAGCCCCTGTGCTTTAGGGAGCAA
1041 CCGTGAGCCGAGCCCAGAGGCCTGGGCCTGCACTGCCTGCAGCCGACATGCGACAGCGTTCCCTCCCCCGCGTGCCTAGC
1121 CGGTGCCGGTCCGGGCACAGACCCCCCCAGCCCCCGCCCTGCCCCAGGGAAGCCTGGGCTTCCCGGGAACAAGGTGGCAT
1201 TTGTGGAGGGAGCGCCCGCAGGCCTGGTCTGCTGGGGCCGCCTGCGCTGGGCTGAAGGGAGGGAAAGGCGGCTTGGGCCT
1281 CCTGGAAGGAGGTGGCCACCCCGCGGGCCTGCGTGTCTGCTGGGGCGGATCCCGCAGCTCCCTCAGCTTGTCCTGAGTCC
1361 CTTGGGTGTCGTTGAGATTGTTGTTTTTTGAAGAAACAGAAGATTCTATTTTTTACAGCGAGCAAGCTGGTTTTCTTATT
1441 TTTGTATCCTTTTTCAGATGTAATTTTTATCTTTGCTCCGATCCTCATTTGCTGGTGTGGGTGAGGGATCCGGCGGCATG
1521 GGCTGGTTTCACCCCCTTCACGAGGGGCCGCAGAGTCACACGCTGGTGCCGGGGGTGCTTTGGGGGGAGCTGCGCCGATC
1601 ACCAGATTAAGCACATGTCCTATCCCAGGCGGTGGAGCGGAGCCCCCGTGGCTCTGGACTGCGCGGACGTTGGCGTCAGG
1681 ATGACCACACGGCGGCCTTTCCCGAATGGGGACAGAACCCGCTCTGAGCCGTGGGTCTGGCTCCTGTAGGGGACTGGCTC
1761 TCTTGGTGCACCAGGGGAGGGGGACATATCCCAGTGAACCCCACCTTGGCGCCTGAGGCAACACAGGGTGGGCACTGACC
1841 CACCCCCAGGGGCGGCTGCAGAGGCAGTGCCCGCAGACAATGGCCACACCTCTCTCCCCAGGGCCCGGCAGTGCCCAAGG
1921 ATGGGTCCGGGGCCTCGGGGCCAATGAGCGCCTCTTCCTAGGTGCTGGGATTCAGTCCCCAAACACAGCGGGAGGGGTCC
2001 CTGGGGCAGATGGGGCTTTACCAGCGTCGGGTGGTTTAGTTCGAGTCCCTTTTGTGGAGAAAGGGAGATGAAAACTGACC
2081 ACGTGCCAGGTGTGGCCGAAGCCCCCAGGGAGGGCCACATTCGGGGAGCGGGGGGTCGGGGGAGGGCCACCGACTGGCTC
2161 TGCTGCCAGCACAGGCCCCTCCCTGGAAGTCCTCGGGAGCGGAGCGCGGATCGGCACGGGCTCTGGGCTCCCCGTGGAGA
2241 GAAGCTGTAGTTTTTACCAAATTGTGTACATCTGGGCAGATGTTTAATTTCTGTGACTAATCACTGAACTAGACGAATGT
2321 TAAATTTTTTATGTCTGAAGCCTGAGTCTATTTTGGATCTGTAAATAATCATTGCCAGTGTGACTTTTGTTCAACAAAAG
2401 GATTGTACTGTATTAAGAACCGATGAAAAAAATTCTCCTGTAACATTTTTTTAAGAAAACTTTGTTTGTTTAAAGAAAAA
2481 GTATTGTATAAATTATAATTTTTATTTAAATAAACCTAAAATGCTTTGTGCTAAGGCTCAAAAAAAAAAAAAAAAAAAAA
2561 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUUUGAC--GU-----UAAU-GAAAACGu 5'
            | ||:||  ||     || | ||||||| 
Target 5' aaACAATTGGACATCCTCATGAGCTTTTGCa 3'
 80 - 110 151.00 -12.40
2 
miRNA  3' guuuuUGACGUU---AAUGAAAACGu 5'
               |:||| |   | |||||||: 
Target 5' taatcATTGCCAGTGTGACTTTTGTt 3'
 2366 - 2391 142.00 -11.40
3 
miRNA  3' guuUUUGAC---GUUAAUGAAAACGu 5'
             ||:|||   :  |||:|||||: 
Target 5' agcAAGCTGGTTTTCTTATTTTTGTa 3'
 1421 - 1446 132.00 -10.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30458732 12 COSMIC
COSN30447707 14 COSMIC
COSN30643081 15 COSMIC
COSN31592612 19 COSMIC
COSN1263163 29 COSMIC
COSN31604688 34 COSMIC
COSN32055758 46 COSMIC
COSN6423318 46 COSMIC
COSN30117568 57 COSMIC
COSN30181377 58 COSMIC
COSN31574268 118 COSMIC
COSN31574559 135 COSMIC
COSN31526264 153 COSMIC
COSN24273393 245 COSMIC
COSN31531221 316 COSMIC
COSN31537095 382 COSMIC
COSN21798931 437 COSMIC
COSN31531893 448 COSMIC
COSN31479717 453 COSMIC
COSN20094016 711 COSMIC
COSN28755066 728 COSMIC
COSN23069749 860 COSMIC
COSN24969449 1098 COSMIC
COSN15905790 1133 COSMIC
COSN23987238 1134 COSMIC
COSN16881207 1219 COSMIC
COSN21774611 1228 COSMIC
COSN31610610 1537 COSMIC
COSN30174346 1587 COSMIC
COSN30174219 1588 COSMIC
COSN30173986 1641 COSMIC
COSN31583928 1648 COSMIC
COSN28226796 1649 COSMIC
COSN31779381 1732 COSMIC
COSN28790984 1790 COSMIC
COSN4785555 2207 COSMIC
COSN28102507 2260 COSMIC
COSN30174217 2280 COSMIC
COSN28671981 2315 COSMIC
COSN30174125 2402 COSMIC
COSN31527994 2436 COSMIC
COSN26650410 2531 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1054894446 6 dbSNP
rs756798390 18 dbSNP
rs778777056 19 dbSNP
rs750031848 20 dbSNP
rs758691133 23 dbSNP
rs780421354 24 dbSNP
rs751076909 29 dbSNP
rs752917812 29 dbSNP
rs756758231 29 dbSNP
rs747492343 33 dbSNP
rs1399875426 34 dbSNP
rs767968704 36 dbSNP
rs750921546 40 dbSNP
rs370777720 42 dbSNP
rs756476203 42 dbSNP
rs564541332 44 dbSNP
rs1013458840 45 dbSNP
rs1411174297 45 dbSNP
rs1024394361 46 dbSNP
rs749605615 46 dbSNP
rs769255678 47 dbSNP
rs1409899846 51 dbSNP
rs200370294 51 dbSNP
rs1479659116 52 dbSNP
rs375658129 52 dbSNP
rs545227284 52 dbSNP
rs748294077 52 dbSNP
rs772167350 52 dbSNP
rs779271524 52 dbSNP
rs1491072784 53 dbSNP
rs906328947 58 dbSNP
rs1251437089 59 dbSNP
rs1003389392 60 dbSNP
rs1231286828 65 dbSNP
rs1457371233 65 dbSNP
rs758683326 68 dbSNP
rs1378463214 73 dbSNP
rs570637745 74 dbSNP
rs1446341231 79 dbSNP
rs571204777 87 dbSNP
rs1367702902 90 dbSNP
rs1322529737 93 dbSNP
rs1456146724 94 dbSNP
rs778094482 100 dbSNP
rs530814661 104 dbSNP
rs35748179 107 dbSNP
rs187551483 112 dbSNP
rs973078262 118 dbSNP
rs928732781 126 dbSNP
rs1396763712 146 dbSNP
rs1445475215 149 dbSNP
rs1328659471 153 dbSNP
rs1385669532 154 dbSNP
rs937427471 158 dbSNP
rs1454012948 161 dbSNP
rs1027767234 162 dbSNP
rs1312568518 163 dbSNP
rs1405996166 164 dbSNP
rs1176754527 167 dbSNP
rs1056399645 174 dbSNP
rs1239181724 178 dbSNP
rs1320304222 187 dbSNP
rs757729396 189 dbSNP
rs914743065 190 dbSNP
rs1460785293 191 dbSNP
rs953152946 191 dbSNP
rs1041958023 192 dbSNP
rs1283117125 194 dbSNP
rs1421711318 197 dbSNP
rs768713032 200 dbSNP
rs986250862 201 dbSNP
rs1196877596 202 dbSNP
rs1451140693 205 dbSNP
rs1382607453 212 dbSNP
rs911658330 214 dbSNP
rs1245079228 216 dbSNP
rs536474193 217 dbSNP
rs1433316195 218 dbSNP
rs1343691037 219 dbSNP
rs977583355 223 dbSNP
rs1406116319 234 dbSNP
rs924855000 236 dbSNP
rs936293365 240 dbSNP
rs774477086 241 dbSNP
rs1161677914 242 dbSNP
rs1007874834 247 dbSNP
rs1421907160 249 dbSNP
rs1180004716 252 dbSNP
rs1195044597 254 dbSNP
rs1241208234 264 dbSNP
rs1484754574 264 dbSNP
rs915861012 267 dbSNP
rs1221879802 268 dbSNP
rs1423957502 269 dbSNP
rs948755181 270 dbSNP
rs899610279 271 dbSNP
rs996603618 274 dbSNP
rs549453683 275 dbSNP
rs1298944335 276 dbSNP
rs1216735438 278 dbSNP
rs1027273969 279 dbSNP
rs1407684239 284 dbSNP
rs1288611860 289 dbSNP
rs1437460173 295 dbSNP
rs1367617941 299 dbSNP
rs368706381 300 dbSNP
rs1003358325 308 dbSNP
rs952540135 310 dbSNP
rs1469812400 315 dbSNP
rs1036224612 319 dbSNP
rs781580516 319 dbSNP
rs897737668 321 dbSNP
rs1172421746 332 dbSNP
rs995201675 341 dbSNP
rs1426616931 345 dbSNP
rs1418571561 353 dbSNP
rs1191488594 357 dbSNP
rs1015439375 361 dbSNP
rs745333218 366 dbSNP
rs566168873 367 dbSNP
rs953132845 370 dbSNP
rs1483082299 375 dbSNP
rs1276090165 376 dbSNP
rs534852715 379 dbSNP
rs558110624 381 dbSNP
rs1018632406 382 dbSNP
rs965797630 386 dbSNP
rs1347692066 394 dbSNP
rs1281580260 402 dbSNP
rs959080595 403 dbSNP
rs1217063439 404 dbSNP
rs991549298 407 dbSNP
rs914732280 409 dbSNP
rs41279839 420 dbSNP
rs924823902 431 dbSNP
rs2748342 432 dbSNP
rs990772093 434 dbSNP
rs916176239 435 dbSNP
rs1193509758 436 dbSNP
rs948703519 451 dbSNP
rs1045752706 452 dbSNP
rs928690433 453 dbSNP
rs1251240707 455 dbSNP
rs932429851 462 dbSNP
rs1188091332 466 dbSNP
rs1261607205 467 dbSNP
rs1223167237 476 dbSNP
rs940120804 480 dbSNP
rs888307357 481 dbSNP
rs373474616 482 dbSNP
rs1389734430 483 dbSNP
rs191012751 485 dbSNP
rs1372609578 486 dbSNP
rs1477344312 488 dbSNP
rs1303332918 493 dbSNP
rs1470885087 497 dbSNP
rs1403670611 499 dbSNP
rs573847062 502 dbSNP
rs1036193540 509 dbSNP
rs906469668 510 dbSNP
rs1430885652 512 dbSNP
rs542823623 518 dbSNP
rs1184776308 519 dbSNP
rs1174725961 522 dbSNP
rs897623170 523 dbSNP
rs1357972814 525 dbSNP
rs994693684 530 dbSNP
rs1261669462 531 dbSNP
rs1049428127 532 dbSNP
rs1351747929 540 dbSNP
rs889063077 544 dbSNP
rs760894177 545 dbSNP
rs1237031395 561 dbSNP
rs1316433270 563 dbSNP
rs958727174 564 dbSNP
rs1360304484 567 dbSNP
rs1398468924 569 dbSNP
rs1285503965 570 dbSNP
rs1335905699 571 dbSNP
rs1346374381 572 dbSNP
rs5769068 574 dbSNP
rs1018601329 576 dbSNP
rs572894153 577 dbSNP
rs544807557 581 dbSNP
rs1217889326 582 dbSNP
rs370356747 585 dbSNP
rs564882664 586 dbSNP
rs924738517 588 dbSNP
rs1031393664 602 dbSNP
rs375020369 603 dbSNP
rs1264236951 608 dbSNP
rs977027848 610 dbSNP
rs1485625669 613 dbSNP
rs41279841 614 dbSNP
rs990349500 620 dbSNP
rs932320352 621 dbSNP
rs1314254448 626 dbSNP
rs7286826 629 dbSNP
rs1397217594 630 dbSNP
rs530056034 634 dbSNP
rs753201170 653 dbSNP
rs41279843 654 dbSNP
rs1383970035 658 dbSNP
rs1163485808 660 dbSNP
rs1476001930 664 dbSNP
rs1380223213 669 dbSNP
rs1036830455 672 dbSNP
rs906374761 673 dbSNP
rs1418318913 674 dbSNP
rs1305318138 676 dbSNP
rs1269862251 680 dbSNP
rs1224868471 696 dbSNP
rs1003905043 698 dbSNP
rs566701339 700 dbSNP
rs535102291 702 dbSNP
rs940006221 703 dbSNP
rs551597677 708 dbSNP
rs1268214802 709 dbSNP
rs571586245 710 dbSNP
rs554626634 711 dbSNP
rs557189435 712 dbSNP
rs573987232 713 dbSNP
rs17761627 714 dbSNP
rs1399240141 723 dbSNP
rs2748343 728 dbSNP
rs1040273375 729 dbSNP
rs977434914 731 dbSNP
rs1481367393 733 dbSNP
rs765225899 734 dbSNP
rs573395887 741 dbSNP
rs998488369 742 dbSNP
rs1270794910 751 dbSNP
rs954414239 752 dbSNP
rs1323966609 753 dbSNP
rs545054474 754 dbSNP
rs1344409746 755 dbSNP
rs1279684017 756 dbSNP
rs1443731186 759 dbSNP
rs909514782 761 dbSNP
rs1327411032 779 dbSNP
rs1465517864 781 dbSNP
rs1031357698 786 dbSNP
rs1178947957 789 dbSNP
rs1036733858 791 dbSNP
rs564853084 797 dbSNP
rs575132270 801 dbSNP
rs565053508 818 dbSNP
rs1231158001 822 dbSNP
rs1181033009 825 dbSNP
rs1461658403 825 dbSNP
rs927830899 826 dbSNP
rs779922899 832 dbSNP
rs1162948755 833 dbSNP
rs1322472324 835 dbSNP
rs1284479854 837 dbSNP
rs1225016928 840 dbSNP
rs939180714 850 dbSNP
rs1278404522 855 dbSNP
rs1012144238 857 dbSNP
rs752829758 858 dbSNP
rs1339174174 859 dbSNP
rs138858582 860 dbSNP
rs1447683293 861 dbSNP
rs895076436 864 dbSNP
rs1330733030 870 dbSNP
rs1402621350 872 dbSNP
rs1374714698 873 dbSNP
rs1158058940 875 dbSNP
rs1011205145 876 dbSNP
rs1023167004 877 dbSNP
rs560911705 879 dbSNP
rs970712785 880 dbSNP
rs1227528748 881 dbSNP
rs1444855066 901 dbSNP
rs904521350 904 dbSNP
rs754486061 907 dbSNP
rs1287369160 908 dbSNP
rs1360879781 910 dbSNP
rs981651105 912 dbSNP
rs1035951982 913 dbSNP
rs1256903317 919 dbSNP
rs1031746216 920 dbSNP
rs961344413 921 dbSNP
rs1343637600 929 dbSNP
rs1297733331 933 dbSNP
rs972753294 947 dbSNP
rs3209569 962 dbSNP
rs931449836 963 dbSNP
rs1161617194 964 dbSNP
rs1238488788 968 dbSNP
rs1423132222 969 dbSNP
rs1419968867 970 dbSNP
rs1187987301 976 dbSNP
rs985028430 977 dbSNP
rs1180462208 978 dbSNP
rs910348889 985 dbSNP
rs141975005 990 dbSNP
rs1220906652 993 dbSNP
rs1321596372 995 dbSNP
rs560257129 1000 dbSNP
rs1216663725 1004 dbSNP
rs1040241426 1005 dbSNP
rs764335659 1016 dbSNP
rs1277794806 1018 dbSNP
rs1405719250 1032 dbSNP
rs901784394 1038 dbSNP
rs1367537139 1040 dbSNP
rs961017047 1042 dbSNP
rs748047485 1043 dbSNP
rs934308053 1044 dbSNP
rs1398221306 1046 dbSNP
rs532226365 1050 dbSNP
rs1422547491 1053 dbSNP
rs1199712435 1057 dbSNP
rs1481173792 1062 dbSNP
rs866168345 1063 dbSNP
rs1488465330 1070 dbSNP
rs939070437 1071 dbSNP
rs1207138124 1073 dbSNP
rs1336170542 1075 dbSNP
rs1011363413 1081 dbSNP
rs1340979612 1082 dbSNP
rs916360105 1085 dbSNP
rs946693695 1086 dbSNP
rs1281509410 1087 dbSNP
rs551803352 1088 dbSNP
rs1043655876 1089 dbSNP
rs571658134 1092 dbSNP
rs531076595 1093 dbSNP
rs1399276942 1094 dbSNP
rs1176832936 1095 dbSNP
rs905996862 1098 dbSNP
rs1003055631 1099 dbSNP
rs1277114957 1105 dbSNP
rs1035925927 1107 dbSNP
rs377261114 1108 dbSNP
rs550560834 1110 dbSNP
rs3747253 1111 dbSNP
rs1027028022 1112 dbSNP
rs952827603 1113 dbSNP
rs115392863 1115 dbSNP
rs911311130 1122 dbSNP
rs3747254 1123 dbSNP
rs1337198789 1124 dbSNP
rs1438421147 1126 dbSNP
rs975908605 1127 dbSNP
rs373810373 1128 dbSNP
rs1173213085 1129 dbSNP
rs1453938142 1130 dbSNP
rs1402876226 1133 dbSNP
rs3747255 1134 dbSNP
rs1053194668 1141 dbSNP
rs533467893 1142 dbSNP
rs990973308 1142 dbSNP
rs1254434048 1143 dbSNP
rs914203634 1144 dbSNP
rs947049002 1147 dbSNP
rs916449770 1149 dbSNP
rs1400313158 1152 dbSNP
rs558583295 1156 dbSNP
rs1044121987 1157 dbSNP
rs868411443 1159 dbSNP
rs1315634246 1162 dbSNP
rs1234838937 1173 dbSNP
rs905634191 1174 dbSNP
rs1003029680 1175 dbSNP
rs1057355436 1183 dbSNP
rs760052121 1185 dbSNP
rs1217996754 1186 dbSNP
rs979365558 1191 dbSNP
rs1288698443 1195 dbSNP
rs1488862709 1196 dbSNP
rs1386655978 1206 dbSNP
rs923870488 1207 dbSNP
rs1216332930 1214 dbSNP
rs994384115 1215 dbSNP
rs776890016 1218 dbSNP
rs1199804016 1224 dbSNP
rs1446900074 1230 dbSNP
rs952716464 1231 dbSNP
rs1187218808 1232 dbSNP
rs1007323669 1240 dbSNP
rs759777048 1241 dbSNP
rs575244436 1246 dbSNP
rs901169006 1246 dbSNP
rs965460857 1247 dbSNP
rs975878897 1250 dbSNP
rs1420429818 1255 dbSNP
rs923146048 1258 dbSNP
rs1382089307 1259 dbSNP
rs955874145 1270 dbSNP
rs1283432906 1271 dbSNP
rs1227847938 1273 dbSNP
rs1327901207 1273 dbSNP
rs544349930 1273 dbSNP
rs988710448 1277 dbSNP
rs914487229 1278 dbSNP
rs947050101 1285 dbSNP
rs1297326350 1291 dbSNP
rs1358274481 1294 dbSNP
rs187783771 1296 dbSNP
rs927022932 1299 dbSNP
rs1304386407 1302 dbSNP
rs938452521 1303 dbSNP
rs2542027 1304 dbSNP
rs897292069 1305 dbSNP
rs574497483 1306 dbSNP
rs1312176812 1311 dbSNP
rs1048614052 1313 dbSNP
rs1239932375 1314 dbSNP
rs888722945 1318 dbSNP
rs544242173 1322 dbSNP
rs1196217594 1323 dbSNP
rs1358854099 1327 dbSNP
rs1018726748 1328 dbSNP
rs1210673158 1329 dbSNP
rs540505137 1334 dbSNP
rs979270668 1335 dbSNP
rs998187264 1335 dbSNP
rs923733272 1336 dbSNP
rs1031054507 1348 dbSNP
rs935277107 1362 dbSNP
rs3747256 1366 dbSNP
rs192461643 1371 dbSNP
rs1430208993 1373 dbSNP
rs922658544 1382 dbSNP
rs1440199274 1384 dbSNP
rs933969037 1384 dbSNP
rs1396801474 1388 dbSNP
rs1157929757 1403 dbSNP
rs1439448514 1407 dbSNP
rs1236155755 1411 dbSNP
rs1197753286 1418 dbSNP
rs1049727524 1420 dbSNP
rs1378272578 1421 dbSNP
rs889881881 1431 dbSNP
rs941415780 1439 dbSNP
rs1038504682 1440 dbSNP
rs1379734682 1449 dbSNP
rs1329781339 1454 dbSNP
rs1446502852 1463 dbSNP
rs1407189808 1466 dbSNP
rs1336415105 1468 dbSNP
rs955844599 1469 dbSNP
rs1424587722 1478 dbSNP
rs897327467 1480 dbSNP
rs994412283 1481 dbSNP
rs1389555103 1488 dbSNP
rs764570170 1498 dbSNP
rs1177845450 1500 dbSNP
rs1384624589 1504 dbSNP
rs1035668052 1513 dbSNP
rs896175122 1516 dbSNP
rs370212172 1532 dbSNP
rs1021529504 1536 dbSNP
rs1206354639 1541 dbSNP
rs969074242 1542 dbSNP
rs562853512 1543 dbSNP
rs979788343 1550 dbSNP
rs1307633083 1551 dbSNP
rs532293119 1552 dbSNP
rs1342640100 1554 dbSNP
rs926906009 1558 dbSNP
rs545669611 1562 dbSNP
rs562751417 1571 dbSNP
rs530891258 1572 dbSNP
rs918355938 1575 dbSNP
rs757310924 1576 dbSNP
rs930139897 1581 dbSNP
rs1030875684 1583 dbSNP
rs550695182 1584 dbSNP
rs1200641834 1588 dbSNP
rs1415724457 1588 dbSNP
rs1179882805 1590 dbSNP
rs888698345 1594 dbSNP
rs1472285541 1595 dbSNP
rs751951089 1597 dbSNP
rs1194772453 1598 dbSNP
rs1487030558 1602 dbSNP
rs1284602533 1606 dbSNP
rs942986974 1609 dbSNP
rs1457332441 1615 dbSNP
rs1177941987 1617 dbSNP
rs1039937201 1621 dbSNP
rs901148283 1625 dbSNP
rs1425399398 1631 dbSNP
rs757738173 1632 dbSNP
rs1187978616 1639 dbSNP
rs1031022035 1640 dbSNP
rs953294657 1643 dbSNP
rs768014409 1644 dbSNP
rs1297609121 1645 dbSNP
rs530061245 1646 dbSNP
rs892569247 1648 dbSNP
rs1010063807 1649 dbSNP
rs985873510 1660 dbSNP
rs1404536922 1662 dbSNP
rs1419895978 1663 dbSNP
rs1195401075 1664 dbSNP
rs1261863173 1666 dbSNP
rs753498186 1669 dbSNP
rs1489114475 1670 dbSNP
rs754678191 1675 dbSNP
rs547227464 1676 dbSNP
rs1219898296 1679 dbSNP
rs1329995544 1692 dbSNP
rs184541977 1694 dbSNP
rs1034279225 1695 dbSNP
rs1277695755 1701 dbSNP
rs918783585 1704 dbSNP
rs149526341 1705 dbSNP
rs1056610178 1708 dbSNP
rs896743017 1711 dbSNP
rs1354926724 1714 dbSNP
rs959669306 1719 dbSNP
rs1463778996 1720 dbSNP
rs558860737 1721 dbSNP
rs747670035 1722 dbSNP
rs918329784 1726 dbSNP
rs929752171 1727 dbSNP
rs1045126837 1731 dbSNP
rs984305376 1732 dbSNP
rs1189984489 1744 dbSNP
rs1488414471 1747 dbSNP
rs1239224592 1755 dbSNP
rs1200881619 1757 dbSNP
rs1196818512 1784 dbSNP
rs1000648463 1787 dbSNP
rs1314030048 1790 dbSNP
rs2542026 1790 dbSNP
rs956421345 1792 dbSNP
rs942891855 1795 dbSNP
rs997773098 1806 dbSNP
rs1373939499 1810 dbSNP
rs1039904808 1811 dbSNP
rs901452368 1812 dbSNP
rs1399163075 1816 dbSNP
rs1336995446 1828 dbSNP
rs933974624 1835 dbSNP
rs1375453770 1836 dbSNP
rs1174723087 1843 dbSNP
rs1474071173 1847 dbSNP
rs986062324 1848 dbSNP
rs1052419266 1854 dbSNP
rs777609876 1855 dbSNP
rs118128822 1859 dbSNP
rs1201279357 1860 dbSNP
rs1167675673 1865 dbSNP
rs1011368610 1868 dbSNP
rs1254387838 1870 dbSNP
rs1043824054 1873 dbSNP
rs904324861 1874 dbSNP
rs1361443717 1876 dbSNP
rs1314701748 1881 dbSNP
rs1375880101 1891 dbSNP
rs554727223 1892 dbSNP
rs1397470271 1893 dbSNP
rs1399573425 1895 dbSNP
rs574438543 1896 dbSNP
rs551900893 1905 dbSNP
rs865917863 1907 dbSNP
rs1013922660 1908 dbSNP
rs553769998 1918 dbSNP
rs951083532 1919 dbSNP
rs796498764 1925 dbSNP
rs570698693 1928 dbSNP
rs1254330449 1929 dbSNP
rs186896966 1930 dbSNP
rs1488663345 1933 dbSNP
rs1303539892 1937 dbSNP
rs528232038 1938 dbSNP
rs964537024 1939 dbSNP
rs546108086 1940 dbSNP
rs975577379 1943 dbSNP
rs1338400237 1950 dbSNP
rs546875308 1951 dbSNP
rs1052072756 1953 dbSNP
rs572941870 1957 dbSNP
rs934283687 1958 dbSNP
rs1295761604 1960 dbSNP
rs1418460265 1965 dbSNP
rs892229780 1966 dbSNP
rs1052639256 1967 dbSNP
rs1164266297 1968 dbSNP
rs913857680 1970 dbSNP
rs1367021635 1978 dbSNP
rs997235024 1983 dbSNP
rs1484605510 1990 dbSNP
rs1478246801 1991 dbSNP
rs1265451351 1993 dbSNP
rs1218500716 1994 dbSNP
rs946750607 1996 dbSNP
rs1267961369 1999 dbSNP
rs1487740015 2005 dbSNP
rs1044175001 2006 dbSNP
rs1353999074 2014 dbSNP
rs1264596511 2022 dbSNP
rs531418552 2024 dbSNP
rs1319529238 2025 dbSNP
rs905297499 2026 dbSNP
rs888946811 2027 dbSNP
rs1433200181 2029 dbSNP
rs1007917337 2030 dbSNP
rs1001352761 2032 dbSNP
rs1016115597 2038 dbSNP
rs544274765 2043 dbSNP
rs974056402 2044 dbSNP
rs1293249488 2045 dbSNP
rs1421961103 2048 dbSNP
rs1466375306 2070 dbSNP
rs895734754 2071 dbSNP
rs1426047945 2076 dbSNP
rs1014142925 2077 dbSNP
rs1025569874 2083 dbSNP
rs951091824 2084 dbSNP
rs1200952053 2086 dbSNP
rs992250853 2091 dbSNP
rs1266473005 2096 dbSNP
rs1005237719 2098 dbSNP
rs918110992 2099 dbSNP
rs1255744154 2101 dbSNP
rs144223689 2102 dbSNP
rs568236683 2102 dbSNP
rs1017077170 2115 dbSNP
rs980914100 2122 dbSNP
rs963792835 2123 dbSNP
rs975549731 2124 dbSNP
rs1236093495 2127 dbSNP
rs1368404976 2129 dbSNP
rs561052527 2130 dbSNP
rs936874901 2130 dbSNP
rs529998135 2131 dbSNP
rs377537401 2135 dbSNP
rs1345613114 2136 dbSNP
rs1409564021 2136 dbSNP
rs560562138 2138 dbSNP
rs946687776 2139 dbSNP
rs966116210 2144 dbSNP
rs191689883 2147 dbSNP
rs926689541 2149 dbSNP
rs1352644300 2151 dbSNP
rs1441328627 2152 dbSNP
rs938119209 2163 dbSNP
rs1248024603 2165 dbSNP
rs1056566196 2166 dbSNP
rs769921933 2172 dbSNP
rs1442586348 2173 dbSNP
rs1280185142 2178 dbSNP
rs949879229 2193 dbSNP
rs1047400641 2195 dbSNP
rs1303335382 2196 dbSNP
rs775629640 2200 dbSNP
rs1442125128 2201 dbSNP
rs1005618108 2202 dbSNP
rs1380095542 2204 dbSNP
rs1016635207 2207 dbSNP
rs993333080 2208 dbSNP
rs899510870 2209 dbSNP
rs1336316939 2214 dbSNP
rs951402340 2215 dbSNP
rs1159186027 2218 dbSNP
rs1374864595 2218 dbSNP
rs992678850 2219 dbSNP
rs376578599 2222 dbSNP
rs969850420 2223 dbSNP
rs1323933555 2224 dbSNP
rs980945093 2232 dbSNP
rs1379151532 2233 dbSNP
rs1029379511 2234 dbSNP
rs552847447 2235 dbSNP
rs1286065495 2238 dbSNP
rs988349060 2241 dbSNP
rs1021609957 2260 dbSNP
rs1356440747 2263 dbSNP
rs988384292 2273 dbSNP
rs1223576060 2283 dbSNP
rs1357392349 2291 dbSNP
rs1286188119 2292 dbSNP
rs1309815717 2292 dbSNP
rs1446005646 2296 dbSNP
rs968360892 2301 dbSNP
rs979841979 2302 dbSNP
rs913586251 2303 dbSNP
rs763013968 2307 dbSNP
rs1401818614 2310 dbSNP
rs932981861 2311 dbSNP
rs1158182064 2313 dbSNP
rs3179 2315 dbSNP
rs888883191 2319 dbSNP
rs943086230 2320 dbSNP
rs938003280 2342 dbSNP
rs1263334291 2343 dbSNP
rs1270751224 2343 dbSNP
rs1037498307 2344 dbSNP
rs1261634836 2351 dbSNP
rs1215627786 2355 dbSNP
rs898999963 2363 dbSNP
rs1292419674 2364 dbSNP
rs1179821908 2371 dbSNP
rs774772993 2377 dbSNP
rs538444540 2379 dbSNP
rs1047624338 2380 dbSNP
rs1338450064 2381 dbSNP
rs1288225519 2385 dbSNP
rs1437064245 2388 dbSNP
rs1183939466 2391 dbSNP
rs895700886 2394 dbSNP
rs1321319200 2397 dbSNP
rs548266174 2402 dbSNP
rs568151625 2404 dbSNP
rs1423895679 2406 dbSNP
rs1025364236 2407 dbSNP
rs1476560967 2411 dbSNP
rs375680943 2422 dbSNP
rs918025824 2423 dbSNP
rs1002286515 2426 dbSNP
rs1162994978 2426 dbSNP
rs1212176450 2433 dbSNP
rs1468256876 2435 dbSNP
rs949848019 2436 dbSNP
rs1046922057 2439 dbSNP
rs753689173 2443 dbSNP
rs533919832 2445 dbSNP
rs1316178463 2446 dbSNP
rs184196406 2446 dbSNP
rs767924575 2447 dbSNP
rs899478300 2450 dbSNP
rs1285765625 2452 dbSNP
rs1400682435 2461 dbSNP
rs1439880143 2461 dbSNP
rs529540267 2461 dbSNP
rs1227402825 2474 dbSNP
rs1463695269 2484 dbSNP
rs1353433426 2487 dbSNP
rs1176128962 2490 dbSNP
rs996485721 2503 dbSNP
rs576807552 2504 dbSNP
rs1427860851 2516 dbSNP
rs1192213688 2523 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions hESCs (WA-09)
Disease 23151.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in SRR359787. RNA binding protein: AGO2. Condition:4-thiouridine ...

- Lipchina I; Elkabetz Y; Hafner M; Sheridan et al., 2011, Genes & development.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guUUUUGACGUUAAUGAAAACGu 5'
            ::| |||:::|| || |||: 
Target 5' cuGGACCUGUGGUU-CUAUUGUg 3'
 		12 - 33
Article - Lipchina I; Elkabetz Y; Hafner M; Sheridan et al.
- Genes & development, 2011
MicroRNAs are important regulators in many cellular processes, including stem cell self-renewal. Recent studies demonstrated their function as pluripotency factors with the capacity for somatic cell reprogramming. However, their role in human embryonic stem (ES) cells (hESCs) remains poorly understood, partially due to the lack of genome-wide strategies to identify their targets. Here, we performed comprehensive microRNA profiling in hESCs and in purified neural and mesenchymal derivatives. Using a combination of AGO cross-linking and microRNA perturbation experiments, together with computational prediction, we identified the targets of the miR-302/367 cluster, the most abundant microRNAs in hESCs. Functional studies identified novel roles of miR-302/367 in maintaining pluripotency and regulating hESC differentiation. We show that in addition to its role in TGF-beta signaling, miR-302/367 promotes bone morphogenetic protein (BMP) signaling by targeting BMP inhibitors TOB2, DAZAP2, and SLAIN1. This study broadens our understanding of microRNA function in hESCs and is a valuable resource for future studies in this area.
LinkOut: [PMID: 22012620]
CLIP-seq Support 1 for dataset SRR359787
Method / RBP PAR-CLIP / AGO2
Cell line / Condition hESCs (WA-09) / 4-thiouridine, RNase T1
Location of target site ENST00000361034.3 | 3UTR | CAAUAAUUCUCCUGGACCUGUGGUUCUAUUGUGUUGACCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22012620 / SRX103431
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
249 hsa-miR-548x-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057505 CEP55 centrosomal protein 55 2 4
MIRT060830 CEP350 centrosomal protein 350 2 4
MIRT062721 MLEC malectin 2 4
MIRT064767 CCND2 cyclin D2 2 8
MIRT075338 SF3B3 splicing factor 3b subunit 3 2 2
MIRT080209 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT080238 SMAD4 SMAD family member 4 2 6
MIRT087397 AGFG1 ArfGAP with FG repeats 1 2 4
MIRT088230 GRAMD4 GRAM domain containing 4 2 2
MIRT089495 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT091224 USP13 ubiquitin specific peptidase 13 2 2
MIRT092960 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT094093 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 4
MIRT097470 PAPD4 poly(A) RNA polymerase D4, non-canonical 2 2
MIRT102253 HBP1 HMG-box transcription factor 1 2 4
MIRT105441 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT107289 FAM73B mitoguardin 2 2 2
MIRT113586 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT113887 KPNA6 karyopherin subunit alpha 6 2 6
MIRT126459 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT135026 ADSS adenylosuccinate synthase 2 6
MIRT139893 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT149712 LDLR low density lipoprotein receptor 2 2
MIRT163234 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT165202 GRAMD3 GRAM domain containing 2B 2 2
MIRT172173 FZD6 frizzled class receptor 6 2 8
MIRT177397 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT179430 TBRG1 transforming growth factor beta regulator 1 2 6
MIRT195619 FAM195A MAPK regulated corepressor interacting protein 2 2 6
MIRT208729 MED12L mediator complex subunit 12 like 2 6
MIRT211511 ELMOD2 ELMO domain containing 2 2 2
MIRT213435 MOB1B MOB kinase activator 1B 2 6
MIRT240123 NDRG1 N-myc downstream regulated 1 2 2
MIRT243103 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT247389 HCFC2 host cell factor C2 2 4
MIRT248058 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT249459 ZNF691 zinc finger protein 691 2 4
MIRT253422 EVI5L ecotropic viral integration site 5 like 2 2
MIRT254149 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT258908 LAPTM4B lysosomal protein transmembrane 4 beta 2 4
MIRT259394 SLC6A8 solute carrier family 6 member 8 2 4
MIRT266973 LRRC55 leucine rich repeat containing 55 2 4
MIRT279002 GMFB glia maturation factor beta 2 10
MIRT288803 KCNJ2 potassium voltage-gated channel subfamily J member 2 2 2
MIRT325680 ZNF367 zinc finger protein 367 2 2
MIRT330544 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 4
MIRT334273 RCC2 regulator of chromosome condensation 2 2 2
MIRT350226 PRNP prion protein 2 2
MIRT400513 SKIL SKI like proto-oncogene 2 10
MIRT405640 WBP4 WW domain binding protein 4 2 4
MIRT408652 QKI QKI, KH domain containing RNA binding 2 2
MIRT444160 ZNF701 zinc finger protein 701 2 2
MIRT444508 ZNF525 zinc finger protein 525 2 2
MIRT445208 CRYBG3 crystallin beta-gamma domain containing 3 2 2
MIRT446843 FOXP1 forkhead box P1 2 2
MIRT449025 ADRB1 adrenoceptor beta 1 2 2
MIRT450745 POLI DNA polymerase iota 2 4
MIRT450792 OTUD7A OTU deubiquitinase 7A 2 2
MIRT454915 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455265 DDX39B DExD-box helicase 39B 2 10
MIRT455714 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT456097 MB21D1 Mab-21 domain containing 1 2 6
MIRT463634 YY1 YY1 transcription factor 2 8
MIRT463890 WNT7B Wnt family member 7B 2 2
MIRT466261 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT466819 STX6 syntaxin 6 2 6
MIRT466878 STX16 syntaxin 16 2 2
MIRT467523 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT468198 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468632 SELT selenoprotein T 2 2
MIRT470366 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT470997 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471558 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT472276 NFIB nuclear factor I B 2 4
MIRT472757 MTMR6 myotubularin related protein 6 2 8
MIRT474718 KIF13A kinesin family member 13A 2 6
MIRT475868 H3F3C H3 histone family member 3C 2 10
MIRT475902 H3F3B H3 histone family member 3B 2 8
MIRT477349 EOGT EGF domain specific O-linked N-acetylglucosamine transferase 2 4
MIRT477485 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT478095 DLG5 discs large MAGUK scaffold protein 5 2 6
MIRT479804 CCNA2 cyclin A2 2 6
MIRT480812 BLCAP bladder cancer associated protein 2 10
MIRT481946 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483059 EXT2 exostosin glycosyltransferase 2 2 6
MIRT484142 LRRC45 leucine rich repeat containing 45 2 4
MIRT484903 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485079 SOX4 SRY-box 4 2 10
MIRT485638 DICER1 dicer 1, ribonuclease III 2 4
MIRT485797 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT486270 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT486739 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT487166 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 2 2
MIRT491641 PDRG1 p53 and DNA damage regulated 1 2 10
MIRT491933 WDR45B WD repeat domain 45B 2 8
MIRT492231 SLC48A1 solute carrier family 48 member 1 2 2
MIRT493088 MMGT1 membrane magnesium transporter 1 2 12
MIRT494478 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT494985 ROCK1 Rho associated coiled-coil containing protein kinase 1 2 2
MIRT495670 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT498466 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT499267 NBPF11 NBPF member 11 2 2
MIRT499853 SVOP SV2 related protein 2 12
MIRT500306 ZNF622 zinc finger protein 622 2 8
MIRT500639 TUBB2A tubulin beta 2A class IIa 2 8
MIRT501221 SEMA4C semaphorin 4C 2 6
MIRT501525 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 8
MIRT501568 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502429 G3BP2 G3BP stress granule assembly factor 2 2 10
MIRT502966 CCNL1 cyclin L1 2 8
MIRT503469 ZNF154 zinc finger protein 154 2 6
MIRT504571 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 4
MIRT504955 ZNRF2 zinc and ring finger 2 2 6
MIRT505205 UBN2 ubinuclein 2 2 8
MIRT505237 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT507569 DEK DEK proto-oncogene 2 2
MIRT509411 MCM7 minichromosome maintenance complex component 7 2 6
MIRT510714 SPG20 spartin 2 6
MIRT510858 RAN RAN, member RAS oncogene family 2 8
MIRT510913 PSMA2 proteasome subunit alpha 2 2 4
MIRT510943 PPTC7 PTC7 protein phosphatase homolog 2 8
MIRT511071 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511212 LNPEP leucyl and cystinyl aminopeptidase 2 4
MIRT511958 ELOVL5 ELOVL fatty acid elongase 5 2 6
MIRT512122 CREBL2 cAMP responsive element binding protein like 2 2 8
MIRT513685 RNF111 ring finger protein 111 2 2
MIRT513895 GRB10 growth factor receptor bound protein 10 2 6
MIRT516304 F8A2 coagulation factor VIII associated 2 2 2
MIRT516330 F8A3 coagulation factor VIII associated 3 2 2
MIRT517520 ITM2C integral membrane protein 2C 2 6
MIRT517929 IMPA1 inositol monophosphatase 1 2 2
MIRT521367 RNF11 ring finger protein 11 2 6
MIRT525191 ZNF93 zinc finger protein 93 2 2
MIRT527215 CCNL2 cyclin L2 2 2
MIRT527834 NUPL1 nucleoporin 58 2 2
MIRT529432 MALT1 MALT1 paracaspase 2 2
MIRT530165 C11orf44 chromosome 11 open reading frame 44 2 4
MIRT530514 C4orf32 family with sequence similarity 241 member A 2 4
MIRT532371 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT533854 TEAD1 TEA domain transcription factor 1 2 2
MIRT534749 RAVER2 ribonucleoprotein, PTB binding 2 2 4
MIRT534794 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT538601 CDK19 cyclin dependent kinase 19 2 2
MIRT539246 ANKRD50 ankyrin repeat domain 50 2 2
MIRT539466 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT543099 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543896 ESYT1 extended synaptotagmin 1 2 2
MIRT544979 MFF mitochondrial fission factor 2 4
MIRT545793 ZNF772 zinc finger protein 772 2 4
MIRT546008 WDR26 WD repeat domain 26 2 4
MIRT546377 STOX2 storkhead box 2 2 4
MIRT546680 RORA RAR related orphan receptor A 2 4
MIRT546946 SFTPA1 surfactant protein A1 2 2
MIRT547033 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT547396 MKX mohawk homeobox 2 2
MIRT547469 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547500 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT548076 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548499 E2F8 E2F transcription factor 8 2 2
MIRT548882 CHEK2 checkpoint kinase 2 2 4
MIRT549062 CALM1 calmodulin 1 2 2
MIRT549165 BMP3 bone morphogenetic protein 3 2 2
MIRT549309 ARHGAP12 Rho GTPase activating protein 12 2 4
MIRT549344 ARC activity regulated cytoskeleton associated protein 2 2
MIRT549474 ACBD5 acyl-CoA binding domain containing 5 2 2
MIRT549677 ZNF598 zinc finger protein 598 2 2
MIRT550208 MAVS mitochondrial antiviral signaling protein 2 4
MIRT550355 INCENP inner centromere protein 2 4
MIRT550530 MYZAP myocardial zonula adherens protein 2 2
MIRT551155 ZNF678 zinc finger protein 678 2 2
MIRT552310 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT552879 WASL Wiskott-Aldrich syndrome like 2 4
MIRT553382 TRIM33 tripartite motif containing 33 2 2
MIRT554452 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554867 RCAN2 regulator of calcineurin 2 2 2
MIRT556021 MYBL1 MYB proto-oncogene like 1 2 2
MIRT556174 MCC mutated in colorectal cancers 2 2
MIRT556237 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT556877 ITGA2 integrin subunit alpha 2 2 2
MIRT557574 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT557689 GATA6 GATA binding protein 6 2 2
MIRT557905 FBXO8 F-box protein 8 2 2
MIRT558131 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT558480 DBN1 drebrin 1 2 2
MIRT558743 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT558759 CFL2 cofilin 2 2 2
MIRT559121 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT559405 GDNF glial cell derived neurotrophic factor 2 4
MIRT559475 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT559676 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT560048 ZNF680 zinc finger protein 680 2 2
MIRT560644 ZNF107 zinc finger protein 107 2 2
MIRT562580 CBX3 chromobox 3 2 2
MIRT564187 CLVS2 clavesin 2 2 2
MIRT564529 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT564539 CCDC80 coiled-coil domain containing 80 2 2
MIRT565288 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT565314 TMEM41A transmembrane protein 41A 2 2
MIRT565949 RRAGD Ras related GTP binding D 2 2
MIRT566632 NFYA nuclear transcription factor Y subunit alpha 2 4
MIRT566817 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT567528 FGFR1OP FGFR1 oncogene partner 2 2
MIRT568630 ACVR2A activin A receptor type 2A 2 2
MIRT572140 DESI1 desumoylating isopeptidase 1 2 2
MIRT616028 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT620047 ODF4 outer dense fiber of sperm tails 4 2 2
MIRT620530 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621877 TAOK3 TAO kinase 3 2 2
MIRT623241 MLLT6 MLLT6, PHD finger containing 2 2
MIRT623993 FAM104A family with sequence similarity 104 member A 2 2
MIRT624300 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT626282 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT627770 RAB30 RAB30, member RAS oncogene family 2 2
MIRT641138 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT644586 SPOP speckle type BTB/POZ protein 2 2
MIRT644819 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT645970 NHLRC2 NHL repeat containing 2 2 2
MIRT646170 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646495 ZNF429 zinc finger protein 429 2 2
MIRT647833 RAB23 RAB23, member RAS oncogene family 2 2
MIRT648462 CCDC127 coiled-coil domain containing 127 2 2
MIRT657280 HRK harakiri, BCL2 interacting protein 2 2
MIRT658643 ENAH ENAH, actin regulator 2 2
MIRT658676 EMP2 epithelial membrane protein 2 2 2
MIRT665228 ZZZ3 zinc finger ZZ-type containing 3 2 2
MIRT669276 C19orf44 chromosome 19 open reading frame 44 2 2
MIRT676047 AUTS8 Autism, susceptibility to, 8 2 2
MIRT681483 DIP2A disco interacting protein 2 homolog A 2 2
MIRT681554 UBXN2A UBX domain protein 2A 2 2
MIRT683142 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT688534 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT689428 CYB561 cytochrome b561 2 2
MIRT689534 KIAA0513 KIAA0513 2 2
MIRT689894 SOD2 superoxide dismutase 2 2 2
MIRT695989 SNX19 sorting nexin 19 2 2
MIRT697780 UBXN7 UBX domain protein 7 2 2
MIRT702914 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT703144 GPR137C G protein-coupled receptor 137C 2 2
MIRT703524 FKBP15 FK506 binding protein 15 2 2
MIRT704536 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704997 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 2
MIRT705721 AMMECR1L AMMECR1 like 2 2
MIRT707120 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT707451 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707775 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT707888 SLC30A7 solute carrier family 30 member 7 2 2
MIRT720531 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT723859 CD209 CD209 molecule 2 2
MIRT725349 MUC21 mucin 21, cell surface associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548x Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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