miRTarBase - #MIRT088427


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pre-miRNA Information
pre-miRNA hsa-mir-302b   
Genomic Coordinates chr4: 112648485 - 112648557
Description Homo sapiens miR-302b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-302b-5p
Sequence 11| ACUUUAACAUGGAAGUGCUUUC |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8489942 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs771747691 1 dbSNP
rs1413992790 2 dbSNP
rs1287454726 3 dbSNP
rs1407802102 5 dbSNP
rs556661625 8 dbSNP
rs114318553 9 dbSNP
rs183105707 12 dbSNP
rs759066554 13 dbSNP
rs1338196516 15 dbSNP
Putative Targets

Gene Information
Gene Symbol LCLAT1   
Synonyms 1AGPAT8, AGPAT8, ALCAT1, HSRG1849, LYCAT, UNQ1849
Description lysocardiolipin acyltransferase 1
Transcript NM_001002257   
Other Transcripts NM_182551   
Expression
Putative miRNA Targets on LCLAT1
3'UTR of LCLAT1
(miRNA target sites are highlighted)		 
>LCLAT1|NM_001002257|3'UTR
   1 GATTATAAGGTTTGCCATGTGAAAACCTAGAGCATATTTTGGAAATGTTCTAAACCTTTCTAAGCTCAGATGCATTTTTG
  81 CATGACTATGTCGAATATTTCTTACTGCCATCATTATTTGTTAAAGATATTTTGCACTTAATTTTGTGGGAAAAATATTG
 161 CTACAATTTTTTTTAATCTCTGAATGTAATTTCGATACTGTGTACATAGCAGGGAGTGATCGGGGTGAAATAACTTGGGC
 241 CAGAATATTATTAAACAATCATCAGGCTTTTAGCGACAAGGAACACACACATTTTTCTTAAAGGCCCAATCCTAACAGAC
 321 TCCCCGTACCAGAGGCAGATCTGGAACTCGTCAACAACAGCCCGGATCACATGCTGTTACTGGACTGCCCAGGTCACCTC
 401 ATTGAGGTGAGCGCTGTCCCTCCAGGTACTCAGGCAGGTGGTGCCCAGGCTCCCTCCCTTGGCGTCCTTCTTCCTGCGCC
 481 AAACCCATCTCATCCTTAAGATCAGAAAATGGAACCCCCTTTGTCGTGAAACCGATCAAGCATTTTGACAGGAAGCCCTT
 561 CATTATTCATAACATTGTATGCTGACCAAGACGTCAGAAGACCACCTGTGCCCTTTTCTCTCGTGGAAGATAAAACCTGG
 641 ACTCAGGGAGCAACCACAGGCTCTCCACTTTGAAACTTTAGTTTGAATTTTAAAAGATAGGAAGTAATACAGTTTAAGTT
 721 CCTTTCTCACACTCAGTATTGCATGCTTAGTGCTGGTTTTCTTACAACATTTTGGCAGGTGTAGCTTTTTCTGTTAAAAA
 801 TGGTATACATGAAGTCACATACTTTTTTAAAGGAACACTCAGAACATTCTGTCATTCCAGTCAGAAACTGTCTTTTGAAA
 881 TATTTCTTTACAACCTACCAAAAAAGGAAGGTTGTTTTTTCTACATGTGCTTGGGTATCTAACATCTACCATTAAAACAA
 961 CAAATGGCTTGCAGACAGGGCAGTAATGGTTTATCCTAAATTACTCAACCCCTTGTAGCCTTGACAAATTTTACCTTAAA
1041 ACCAAAATGAAACACAAAAATTAATCCTTAATAATGATAGCAAGTGATCTTTCTTTTTAGTTTTAGCCTTCCTTTTTCAA
1121 TAGTAATATTTAAACCCACTTTTGACCAATTGTTTGCCCAAATATTCTTGTCATTTGGAGTCAGTGGAAAATCCAGCACA
1201 CCAAGCACCAGTCTTCTTCTGAGGCAAAAGAAAAGTGTTGTCATTTTCACTCTGTTGGAGCTGCACACTTTTTTTTCTTT
1281 TTTTTTTTCTTTTTTTTTTTGTCGTGTAAGAAGGATGCTGGTCAGAGCTGCAGAAAATATGAGGCAATTAAAAGTCTTTA
1361 GCTGTTAGCAAACCTGTTAGTTTTACTTCTGCATTGAACCAGCCTCAGAAGCTACTTACTGCTTTATGTACTCTTTGGGC
1441 ATTAATGCCTTCTCTGTAATTATATCTCGTTTTTGCTTGACAGTGACCTACCCAATAATTGCATCGTGCATTGCCATGAA
1521 AGGTAAACACATTGTGAACTGAACTTACCAAGCAGATTCTGTGAGAAAGCACTGGTTGAGGCTGAACACTGTTGACACAT
1601 CATTTTTATTGGAAGAGTATTAACTGGTGCCTCTTCTGAAACACACCAACCCATATTCCTCTGCTCCCCCAAAGCTGTTT
1681 CTGATCCTGCTGGGAGCAACTAACTAGTTATTATGCACATCTGCTCCAGACCCAGCTCTTTAACTTCATGGTTTTACAGC
1761 TTGTTTTTTCTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTAAAAAAGCACCTTTTTTTGTTGTTTCCCCTTAATAAAAGA
1841 GGTTTCTAATTTATGTTTCTCTAAGATTTCCTTTGGTTGTATTTAGAAACACAAATAGTTTTATAATCAGGATTGCATTT
1921 GTGCTGGGTAAAAGAGGAGAGCTGTGCTTTCTACCCCAAAGTTGTTGGTAATGGAGCCGGTCTGCCCTTCCTACAAACTC
2001 AAGAGGCTCATTGTTCAAGGTGTAACAACATTTAATTGCATGTCCTCTAACGCTTTGAAACCTTTAGAGGGAAGATCCTC
2081 ATTTTTTACAATTTTGTTCCTTTTCATCATAGAAAACATGTTTAAGATAAAATACAAACTTTACCTACCCCAAATTCATA
2161 AAGTACATTTAGTGCTGTATAGCACTAAAACTTAGAGATACAGACACTGTACTTACTTTTTAAGAATTAGAGACAGTAAC
2241 TCCAAAAATAATTGTCCTTTTTTCTTTCTTTCTTTTTTTACAATAAGGCTCTTGAAAATTGTCATTACTTGTGTTTTCCT
2321 ATACATTCATCTGTGTGAAAGCCTTTTTCTTCTTTGATTTAAAAAAATTAACTATACAGTTAATGGTTTAGAACTTAGAA
2401 CTACTTAGAATTAATGCTAAAGTGTCAGGAAGAAATTAATTTAGCTTCAATAATTGTGACTGGCCTCAGGAATTCTCCCT
2481 TCCACACCTGCCCACCTCACCTCACTGCACCGCACCGCACCAGAGCCAGAGCAGCTGCTTGTCTGCAGCAGGACACAGTT
2561 CCTACATACGTTTCAGTTCTTTCATGGTAAGCTCAATGGACTTTGAATTGTTTACAGTGCTGTATGTCCAATTGTTAAAT
2641 GTACCATTCTGAACGATGTTAAAGCAAGTGTGGTTTATTTATGGCATGAACCATGTAACTTGAAATATGAACTTACAAGG
2721 AGGGGCACTCATTAGGTAACAAGTTCTTACACCAAACTTCCTTGATGAAATAAGCCAAAATAATCCTAAAATTCATTAGA
2801 AGAACTTGATAAAAGACTCAAATAAATGTTAGAAAGAGCCCGTAATTTTAGGACTCCTATAAAATTCTTCCTTGTTTGTT
2881 AATGCTATTAAAACTCAGATTCAAGGGAAATACCAGCTTCCACTTGAGTCACTTTGAAATAGTTAATTCAACAGCACCAT
2961 GTTAGAAATATATTGGCAGCCAAGACTCTGAACTCTGCAGAAACATTTGTTTCACCCAGACTTCAAACTCTAGCCCTGAC
3041 TATGATGCCCCTGTGTGCATTTACAATAAAGACTCCAACGGAGGGAGCCTGTTGGTGTTAAATTGTTTACATTTCTTTAT
3121 ACAAATAATGTGCTTTCAGTGCCTTAGTTACAGCTCCCTTTCTGTTTCTTGTTCCAAGGATTCTGTAGTATGTAGTGTGT
3201 TTCTTAGGTAAAGTCTCTTTTTGCTACTGAAAGGGAAATGGTCTCTAAACACTGGTCACTGTAGCAGGTAAACACTACTC
3281 TAACGTGGAGAAATGAGCTTCATGCTGAGGTAGTGGTTGCCTTAGAGCTGTTATTTATGCTGTAGAAAACGAAAATGGTT
3361 TTGCTACCTGATAAGCTTCAGATTAGATATAGCCCTAAAGTTATCCTGTACCTGCATTAAATTTTCATTTTAGAAGAGAA
3441 TCTTGGTTTTGGTAATTCATTTTTTTTTAAGATCATTATGTGCAAAACACCAAGTTTTAAAAATAACTCACAGAATGGCC
3521 TTAGTTTTCAATGTCTGATGGTATATTTGTGAGTTGTGTTATCTGTAATATACATCCCAGAATAAAGGAGTGAATTAAAT
3601 AGTTTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUUCGUG--AAGG-----UACAAUUUCa 5'
            | |:||  |||:     ||||||||| 
Target 5' aaATGTACCATTCTGAACGATGTTAAAGc 3'
 2637 - 2665 158.00 -9.80
2 
miRNA  3' cuuUCGUGAAGGUACAAUUUCa 5'
             | || || : |||||||| 
Target 5' gccATCA-TTATTTGTTAAAGa 3'
 107 - 127 154.00 -8.20
3 
miRNA  3' cuuUCGUGAAGGUACAAUUUca 5'
             ||| :||:| |||||||  
Target 5' tgtAGCTTTTTC-TGTTAAAaa 3'
 780 - 800 146.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30501806 6 COSMIC
COSN23015978 34 COSMIC
COSN31596481 45 COSMIC
COSN30522547 63 COSMIC
COSN30129705 93 COSMIC
COSN8609085 138 COSMIC
COSN31519806 171 COSMIC
COSN31595467 279 COSMIC
COSN31515245 298 COSMIC
COSN31523849 319 COSMIC
COSN9370135 542 COSMIC
COSN29133022 698 COSMIC
COSN1237577 1024 COSMIC
COSN20096434 1276 COSMIC
COSN20096432 1277 COSMIC
COSN23974445 1278 COSMIC
COSN20096435 1290 COSMIC
COSN20096436 1301 COSMIC
COSN32057601 1305 COSMIC
COSN17608794 1492 COSMIC
COSN7244579 1790 COSMIC
COSN20096438 1800 COSMIC
COSN17187785 1801 COSMIC
COSN20096437 1801 COSMIC
COSN6178280 1830 COSMIC
COSN1835607 1848 COSMIC
COSN29565951 2506 COSMIC
COSN26763233 2567 COSMIC
COSN24107697 2997 COSMIC
COSN31550167 3055 COSMIC
COSN24337764 3115 COSMIC
COSN31568656 3216 COSMIC
COSN7244580 3251 COSMIC
COSN24976084 3294 COSMIC
COSN22868631 3469 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758147000 5 dbSNP
rs778687253 6 dbSNP
rs746772414 9 dbSNP
rs1311094338 10 dbSNP
rs1342607561 16 dbSNP
rs978642021 18 dbSNP
rs754956150 28 dbSNP
rs369803873 33 dbSNP
rs747722340 40 dbSNP
rs1350190129 42 dbSNP
rs1329793833 43 dbSNP
rs1411821152 51 dbSNP
rs769290658 52 dbSNP
rs757815757 57 dbSNP
rs1470344241 63 dbSNP
rs954845295 89 dbSNP
rs188210387 91 dbSNP
rs746186580 93 dbSNP
rs910802988 94 dbSNP
rs943602735 104 dbSNP
rs1039335018 109 dbSNP
rs769362442 110 dbSNP
rs924952193 111 dbSNP
rs936376491 119 dbSNP
rs564622138 123 dbSNP
rs988144582 127 dbSNP
rs1052602905 128 dbSNP
rs1350443725 129 dbSNP
rs1321981412 135 dbSNP
rs533574894 136 dbSNP
rs1439622674 141 dbSNP
rs933402688 142 dbSNP
rs1338999670 145 dbSNP
rs1333744104 150 dbSNP
rs1453489816 154 dbSNP
rs1408306736 159 dbSNP
rs1178540155 162 dbSNP
rs1046219136 165 dbSNP
rs1236229197 166 dbSNP
rs10189926 167 dbSNP
rs1002544469 171 dbSNP
rs1471035249 175 dbSNP
rs6719587 176 dbSNP
rs1278930254 177 dbSNP
rs748759571 188 dbSNP
rs559204204 194 dbSNP
rs768268407 195 dbSNP
rs1461381200 198 dbSNP
rs1244399742 199 dbSNP
rs1207412879 201 dbSNP
rs544730734 203 dbSNP
rs1356963748 207 dbSNP
rs1225891172 208 dbSNP
rs1016243507 210 dbSNP
rs1229883217 211 dbSNP
rs1314642437 215 dbSNP
rs773843212 219 dbSNP
rs528223874 222 dbSNP
rs942287842 223 dbSNP
rs10200589 224 dbSNP
rs897504693 228 dbSNP
rs771952118 231 dbSNP
rs1402246949 237 dbSNP
rs1199460365 247 dbSNP
rs993601634 248 dbSNP
rs568096369 249 dbSNP
rs190951529 250 dbSNP
rs773026823 259 dbSNP
rs764466831 261 dbSNP
rs1186199261 267 dbSNP
rs182852917 273 dbSNP
rs1474787574 274 dbSNP
rs561195923 275 dbSNP
rs1022813079 276 dbSNP
rs968501041 281 dbSNP
rs760455689 284 dbSNP
rs1474051408 288 dbSNP
rs765393842 289 dbSNP
rs1032035358 291 dbSNP
rs879785422 292 dbSNP
rs1460618110 307 dbSNP
rs979407540 315 dbSNP
rs1331679935 316 dbSNP
rs1214116334 317 dbSNP
rs1362675880 318 dbSNP
rs1270701248 321 dbSNP
rs988584279 326 dbSNP
rs936328224 327 dbSNP
rs1327592281 339 dbSNP
rs1052147839 343 dbSNP
rs1425063391 344 dbSNP
rs570280096 346 dbSNP
rs949147876 348 dbSNP
rs1450042805 350 dbSNP
rs539273550 351 dbSNP
rs1419561709 352 dbSNP
rs1188827092 354 dbSNP
rs1477356287 355 dbSNP
rs1333814867 356 dbSNP
rs1490938155 361 dbSNP
rs552779486 362 dbSNP
rs910740163 364 dbSNP
rs1308184654 365 dbSNP
rs1260280196 366 dbSNP
rs1275143452 370 dbSNP
rs566833467 372 dbSNP
rs937882456 377 dbSNP
rs1282546764 383 dbSNP
rs1038009339 388 dbSNP
rs942176468 399 dbSNP
rs72863050 400 dbSNP
rs555472183 403 dbSNP
rs1461132465 410 dbSNP
rs929572067 412 dbSNP
rs764311220 413 dbSNP
rs895451082 414 dbSNP
rs1467768483 417 dbSNP
rs201100961 418 dbSNP
rs1008995782 424 dbSNP
rs1012675675 432 dbSNP
rs1444666128 448 dbSNP
rs1044139276 452 dbSNP
rs1257409886 453 dbSNP
rs1250016192 457 dbSNP
rs1176860339 464 dbSNP
rs746432518 465 dbSNP
rs965231488 465 dbSNP
rs1208182977 467 dbSNP
rs1234785407 467 dbSNP
rs758721605 473 dbSNP
rs1322841685 478 dbSNP
rs544877364 479 dbSNP
rs956320457 486 dbSNP
rs1460104543 488 dbSNP
rs1000461309 490 dbSNP
rs987733195 501 dbSNP
rs1031499881 502 dbSNP
rs1390576115 506 dbSNP
rs1166810321 507 dbSNP
rs956183121 515 dbSNP
rs998076551 516 dbSNP
rs1030289948 519 dbSNP
rs6723023 522 dbSNP
rs1397733419 526 dbSNP
rs949116450 534 dbSNP
rs369981251 535 dbSNP
rs986194226 541 dbSNP
rs926421913 550 dbSNP
rs79397953 551 dbSNP
rs557159772 553 dbSNP
rs899038024 559 dbSNP
rs1324921846 562 dbSNP
rs1226921620 573 dbSNP
rs768096543 574 dbSNP
rs963414311 576 dbSNP
rs1205624148 577 dbSNP
rs890477553 578 dbSNP
rs1008933428 594 dbSNP
rs1317228605 598 dbSNP
rs1017696370 600 dbSNP
rs540807985 608 dbSNP
rs560779332 610 dbSNP
rs1243265988 614 dbSNP
rs1381433160 618 dbSNP
rs73922675 624 dbSNP
rs1454088340 628 dbSNP
rs1383515242 629 dbSNP
rs919426287 637 dbSNP
rs1033190446 638 dbSNP
rs956461429 642 dbSNP
rs1196320329 645 dbSNP
rs1444294301 646 dbSNP
rs989041038 651 dbSNP
rs541912935 654 dbSNP
rs1426397410 656 dbSNP
rs561487161 660 dbSNP
rs756441068 661 dbSNP
rs1057347920 668 dbSNP
rs186627062 677 dbSNP
rs1204408594 696 dbSNP
rs1467168683 700 dbSNP
rs550434062 701 dbSNP
rs981776680 702 dbSNP
rs1358334510 712 dbSNP
rs1315303202 720 dbSNP
rs1171193484 731 dbSNP
rs926362033 734 dbSNP
rs948395836 739 dbSNP
rs1299841260 741 dbSNP
rs1387756025 747 dbSNP
rs973608942 747 dbSNP
rs80257598 751 dbSNP
rs929181486 753 dbSNP
rs1047658164 758 dbSNP
rs1302294271 764 dbSNP
rs780265561 773 dbSNP
rs1192405788 777 dbSNP
rs911429962 781 dbSNP
rs537779945 784 dbSNP
rs935754478 786 dbSNP
rs1333046959 787 dbSNP
rs1232259578 808 dbSNP
rs1302695222 820 dbSNP
rs1197094734 822 dbSNP
rs17395619 829 dbSNP
rs891586336 832 dbSNP
rs1219374956 841 dbSNP
rs2609945 842 dbSNP
rs1029507176 847 dbSNP
rs1227484968 850 dbSNP
rs1039058251 854 dbSNP
rs1485772831 858 dbSNP
rs900552612 859 dbSNP
rs889688758 862 dbSNP
rs1007540986 863 dbSNP
rs1305215938 866 dbSNP
rs1389837656 873 dbSNP
rs1055010172 874 dbSNP
rs1017558204 879 dbSNP
rs369614361 894 dbSNP
rs1440264466 895 dbSNP
rs535530870 899 dbSNP
rs1361965100 901 dbSNP
rs1269274111 909 dbSNP
rs1200707548 914 dbSNP
rs1010389689 915 dbSNP
rs192561099 924 dbSNP
rs1024504770 932 dbSNP
rs1223389351 940 dbSNP
rs1293885688 949 dbSNP
rs1324739745 959 dbSNP
rs747620740 966 dbSNP
rs1438901622 976 dbSNP
rs1335467485 990 dbSNP
rs1325347143 997 dbSNP
rs1377674268 998 dbSNP
rs992981469 999 dbSNP
rs1242374414 1002 dbSNP
rs1334639794 1006 dbSNP
rs1305541263 1010 dbSNP
rs1316839231 1013 dbSNP
rs917527371 1014 dbSNP
rs925392872 1024 dbSNP
rs1469272893 1027 dbSNP
rs971660261 1048 dbSNP
rs1246058844 1051 dbSNP
rs1174177459 1055 dbSNP
rs773382986 1056 dbSNP
rs1362879814 1062 dbSNP
rs1181997493 1068 dbSNP
rs200452584 1069 dbSNP
rs1240670092 1070 dbSNP
rs1202455381 1072 dbSNP
rs1211382826 1075 dbSNP
rs1033358258 1077 dbSNP
rs569121973 1079 dbSNP
rs1350337784 1085 dbSNP
rs1280392838 1088 dbSNP
rs1242523989 1090 dbSNP
rs139847393 1094 dbSNP
rs1314509903 1095 dbSNP
rs1406818185 1099 dbSNP
rs1453473043 1099 dbSNP
rs948946907 1102 dbSNP
rs1398749007 1106 dbSNP
rs1383916695 1107 dbSNP
rs538263035 1121 dbSNP
rs1441214871 1124 dbSNP
rs558211278 1135 dbSNP
rs979797725 1136 dbSNP
rs925574204 1137 dbSNP
rs920360375 1145 dbSNP
rs950525462 1146 dbSNP
rs578247796 1150 dbSNP
rs528033774 1151 dbSNP
rs1214189533 1153 dbSNP
rs1419716873 1154 dbSNP
rs1285452249 1160 dbSNP
rs1219210865 1166 dbSNP
rs935750235 1168 dbSNP
rs540975517 1180 dbSNP
rs1291305955 1181 dbSNP
rs554027665 1187 dbSNP
rs574188170 1188 dbSNP
rs1381348829 1195 dbSNP
rs933870200 1200 dbSNP
rs1050867995 1207 dbSNP
rs1285912994 1211 dbSNP
rs1428489275 1211 dbSNP
rs1325759866 1212 dbSNP
rs3841597 1212 dbSNP
rs1401258976 1215 dbSNP
rs1421282308 1220 dbSNP
rs1363392166 1221 dbSNP
rs1162470349 1230 dbSNP
rs1444534821 1231 dbSNP
rs62139653 1232 dbSNP
rs1296506959 1238 dbSNP
rs78799722 1244 dbSNP
rs184789792 1252 dbSNP
rs1475399138 1263 dbSNP
rs1243197377 1269 dbSNP
rs1489946055 1269 dbSNP
rs67960987 1269 dbSNP
rs773023874 1269 dbSNP
rs879056242 1271 dbSNP
rs199959171 1272 dbSNP
rs200086642 1272 dbSNP
rs764401562 1272 dbSNP
rs370555402 1273 dbSNP
rs761069534 1273 dbSNP
rs1491052400 1276 dbSNP
rs386644433 1276 dbSNP
rs201114653 1277 dbSNP
rs748711825 1277 dbSNP
rs77842936 1277 dbSNP
rs1039418664 1278 dbSNP
rs1214026962 1278 dbSNP
rs1302181457 1278 dbSNP
rs1343335987 1278 dbSNP
rs1401629719 1278 dbSNP
rs76739247 1278 dbSNP
rs77152743 1279 dbSNP
rs1351228094 1280 dbSNP
rs867114336 1282 dbSNP
rs200385257 1283 dbSNP
rs796183927 1283 dbSNP
rs2028963 1284 dbSNP
rs879041954 1285 dbSNP
rs1173374564 1286 dbSNP
rs370805047 1286 dbSNP
rs1268560720 1287 dbSNP
rs995350651 1287 dbSNP
rs200771819 1288 dbSNP
rs753169834 1288 dbSNP
rs760793079 1288 dbSNP
rs1044959032 1289 dbSNP
rs772725256 1289 dbSNP
rs1282441999 1290 dbSNP
rs1438409767 1290 dbSNP
rs3030198 1290 dbSNP
rs921975559 1292 dbSNP
rs11400317 1295 dbSNP
rs1296036955 1299 dbSNP
rs1318150734 1299 dbSNP
rs1206026746 1300 dbSNP
rs1400347357 1301 dbSNP
rs1440846497 1301 dbSNP
rs1274309591 1302 dbSNP
rs11889783 1303 dbSNP
rs1480288193 1303 dbSNP
rs1182331126 1304 dbSNP
rs1060737 1305 dbSNP
rs1259494900 1307 dbSNP
rs771354649 1309 dbSNP
rs1054533582 1328 dbSNP
rs891914607 1341 dbSNP
rs1010358289 1345 dbSNP
rs1045876927 1346 dbSNP
rs1201821199 1351 dbSNP
rs60820628 1362 dbSNP
rs1262421264 1364 dbSNP
rs993033839 1365 dbSNP
rs1411809841 1372 dbSNP
rs1001752404 1375 dbSNP
rs746909919 1381 dbSNP
rs1033738281 1384 dbSNP
rs1024471010 1390 dbSNP
rs1222805638 1392 dbSNP
rs563776537 1399 dbSNP
rs1377159356 1403 dbSNP
rs111440336 1407 dbSNP
rs1449825721 1408 dbSNP
rs1406064730 1416 dbSNP
rs1027406652 1425 dbSNP
rs1467904263 1427 dbSNP
rs11558821 1429 dbSNP
rs1343763143 1442 dbSNP
rs1158681915 1457 dbSNP
rs546873432 1458 dbSNP
rs774867897 1461 dbSNP
rs911743881 1469 dbSNP
rs935649798 1470 dbSNP
rs988871659 1474 dbSNP
rs1279176576 1483 dbSNP
rs1255393493 1491 dbSNP
rs3816591 1492 dbSNP
rs1215924722 1494 dbSNP
rs1447193 1496 dbSNP
rs1306461111 1506 dbSNP
rs921874478 1507 dbSNP
rs1287699106 1510 dbSNP
rs1050921751 1517 dbSNP
rs911021346 1524 dbSNP
rs925651757 1531 dbSNP
rs942623649 1532 dbSNP
rs1398254595 1533 dbSNP
rs1360464062 1535 dbSNP
rs1288723014 1546 dbSNP
rs990594026 1560 dbSNP
rs1060734 1564 dbSNP
rs899175118 1569 dbSNP
rs1424135481 1580 dbSNP
rs1369085262 1582 dbSNP
rs1045846783 1589 dbSNP
rs1425533083 1597 dbSNP
rs115646016 1600 dbSNP
rs761916471 1602 dbSNP
rs1488460003 1611 dbSNP
rs886560103 1615 dbSNP
rs538375464 1616 dbSNP
rs1014313250 1628 dbSNP
rs1024479209 1630 dbSNP
rs1358134353 1635 dbSNP
rs970188169 1637 dbSNP
rs1001797483 1650 dbSNP
rs1306328607 1652 dbSNP
rs1295422568 1657 dbSNP
rs760278132 1667 dbSNP
rs1033294994 1670 dbSNP
rs551796267 1671 dbSNP
rs1301552765 1672 dbSNP
rs988535549 1674 dbSNP
rs1184952902 1678 dbSNP
rs1165136258 1682 dbSNP
rs3816593 1691 dbSNP
rs1371276467 1697 dbSNP
rs1169787425 1703 dbSNP
rs755340313 1705 dbSNP
rs1478042384 1708 dbSNP
rs955135664 1710 dbSNP
rs1425439368 1712 dbSNP
rs1196987296 1715 dbSNP
rs1433912320 1719 dbSNP
rs1004654106 1722 dbSNP
rs986474039 1725 dbSNP
rs1211127228 1733 dbSNP
rs911073571 1748 dbSNP
rs72798187 1749 dbSNP
rs554464724 1750 dbSNP
rs1374189087 1751 dbSNP
rs1258017450 1758 dbSNP
rs1038598851 1761 dbSNP
rs1320600223 1763 dbSNP
rs965856792 1764 dbSNP
rs1389747090 1771 dbSNP
rs199519917 1771 dbSNP
rs919891927 1771 dbSNP
rs975017443 1772 dbSNP
rs200870191 1773 dbSNP
rs1028907669 1776 dbSNP
rs1434573910 1777 dbSNP
rs957517473 1777 dbSNP
rs1299228962 1781 dbSNP
rs1174072451 1782 dbSNP
rs1198694114 1782 dbSNP
rs1200250275 1782 dbSNP
rs1237089768 1782 dbSNP
rs1276474096 1782 dbSNP
rs201407023 1782 dbSNP
rs201539534 1782 dbSNP
rs374306937 1782 dbSNP
rs71877849 1782 dbSNP
rs765426768 1782 dbSNP
rs777217811 1782 dbSNP
rs1347271834 1783 dbSNP
rs1276860234 1784 dbSNP
rs1429040989 1784 dbSNP
rs1237091224 1786 dbSNP
rs2121601 1787 dbSNP
rs200720157 1788 dbSNP
rs1402390387 1789 dbSNP
rs2028962 1789 dbSNP
rs1234453936 1790 dbSNP
rs1304914878 1791 dbSNP
rs1413733183 1792 dbSNP
rs990133337 1793 dbSNP
rs1345644653 1794 dbSNP
rs1210022101 1795 dbSNP
rs1451232111 1795 dbSNP
rs1286501923 1799 dbSNP
rs35741069 1799 dbSNP
rs13021261 1800 dbSNP
rs764701411 1800 dbSNP
rs1281227012 1801 dbSNP
rs1443374053 1801 dbSNP
rs1491138407 1801 dbSNP
rs60198740 1801 dbSNP
rs74261472 1802 dbSNP
rs1353343667 1804 dbSNP
rs1286937979 1812 dbSNP
rs1242412396 1816 dbSNP
rs1241805578 1820 dbSNP
rs1488897616 1823 dbSNP
rs913248334 1826 dbSNP
rs1195587700 1827 dbSNP
rs1393306325 1828 dbSNP
rs1340957081 1830 dbSNP
rs1336005667 1834 dbSNP
rs1454242683 1843 dbSNP
rs1159840373 1849 dbSNP
rs1359517227 1852 dbSNP
rs1158808914 1855 dbSNP
rs1421024068 1856 dbSNP
rs1410755812 1860 dbSNP
rs1382802365 1862 dbSNP
rs929874466 1864 dbSNP
rs551405154 1866 dbSNP
rs1318054508 1872 dbSNP
rs886399264 1876 dbSNP
rs1441098889 1881 dbSNP
rs757203920 1882 dbSNP
rs1014364004 1886 dbSNP
rs1488129623 1890 dbSNP
rs1264207536 1891 dbSNP
rs937515865 1895 dbSNP
rs1357520461 1904 dbSNP
rs1289290979 1906 dbSNP
rs1228956096 1907 dbSNP
rs1357032495 1911 dbSNP
rs1285818263 1915 dbSNP
rs1368086108 1916 dbSNP
rs1056371831 1917 dbSNP
rs370880037 1922 dbSNP
rs56818448 1931 dbSNP
rs756572179 1940 dbSNP
rs1001728692 1942 dbSNP
rs1322382196 1956 dbSNP
rs1221873191 1957 dbSNP
rs1405432416 1960 dbSNP
rs1416596049 1962 dbSNP
rs1166623755 1963 dbSNP
rs1477711270 1964 dbSNP
rs886088039 1968 dbSNP
rs1033594302 1970 dbSNP
rs1489939357 1973 dbSNP
rs140893427 1977 dbSNP
rs1010874031 1979 dbSNP
rs1317203744 1980 dbSNP
rs543946337 1980 dbSNP
rs1019950901 1989 dbSNP
rs1220234824 1994 dbSNP
rs1365122259 2010 dbSNP
rs957282068 2012 dbSNP
rs955018824 2014 dbSNP
rs1351066179 2019 dbSNP
rs1468126467 2020 dbSNP
rs1020180082 2024 dbSNP
rs967336103 2027 dbSNP
rs1173344470 2031 dbSNP
rs1479626135 2034 dbSNP
rs1424725254 2035 dbSNP
rs563689245 2042 dbSNP
rs981440910 2043 dbSNP
rs144803491 2044 dbSNP
rs1469000689 2045 dbSNP
rs750264873 2050 dbSNP
rs1158355635 2052 dbSNP
rs959052710 2053 dbSNP
rs991645647 2062 dbSNP
rs187606708 2077 dbSNP
rs931523261 2082 dbSNP
rs1369245267 2088 dbSNP
rs1306535040 2090 dbSNP
rs1047332331 2092 dbSNP
rs1333872734 2097 dbSNP
rs908829955 2097 dbSNP
rs1166706478 2101 dbSNP
rs1464888512 2110 dbSNP
rs1391831080 2112 dbSNP
rs940336549 2114 dbSNP
rs1040063827 2118 dbSNP
rs1416422458 2121 dbSNP
rs901557904 2122 dbSNP
rs560416444 2125 dbSNP
rs192091067 2140 dbSNP
rs1439881345 2146 dbSNP
rs1482222722 2156 dbSNP
rs1278759439 2177 dbSNP
rs1335287850 2178 dbSNP
rs1234867380 2179 dbSNP
rs1271582158 2180 dbSNP
rs1334429887 2185 dbSNP
rs1238791506 2189 dbSNP
rs1196472794 2190 dbSNP
rs1353747501 2195 dbSNP
rs1312133292 2196 dbSNP
rs1394855207 2200 dbSNP
rs549145506 2205 dbSNP
rs1379046486 2215 dbSNP
rs1303864822 2216 dbSNP
rs1275128979 2217 dbSNP
rs562720101 2220 dbSNP
rs1358880733 2228 dbSNP
rs531793028 2234 dbSNP
rs1158205230 2250 dbSNP
rs1436613852 2255 dbSNP
rs1181660945 2258 dbSNP
rs1238536136 2259 dbSNP
rs1422053546 2261 dbSNP
rs1476414471 2261 dbSNP
rs1487181154 2261 dbSNP
rs1486489456 2264 dbSNP
rs1186238672 2265 dbSNP
rs1260627690 2265 dbSNP
rs1215381464 2266 dbSNP
rs1353950554 2267 dbSNP
rs1391159917 2268 dbSNP
rs1475489468 2269 dbSNP
rs773221997 2269 dbSNP
rs1415229367 2270 dbSNP
rs1491276761 2271 dbSNP
rs71412842 2272 dbSNP
rs756863458 2272 dbSNP
rs1291917811 2273 dbSNP
rs2593456 2273 dbSNP
rs1407687536 2276 dbSNP
rs1328142385 2277 dbSNP
rs1356001318 2280 dbSNP
rs1416455318 2281 dbSNP
rs1291152033 2282 dbSNP
rs1367822100 2284 dbSNP
rs1165341343 2288 dbSNP
rs1476075850 2290 dbSNP
rs1421277370 2305 dbSNP
rs571635327 2325 dbSNP
rs1488452603 2339 dbSNP
rs1263396318 2344 dbSNP
rs1207565948 2353 dbSNP
rs1355069358 2353 dbSNP
rs1487836158 2353 dbSNP
rs1050245833 2361 dbSNP
rs1224491207 2366 dbSNP
rs71405528 2369 dbSNP
rs1253172699 2370 dbSNP
rs1219618649 2373 dbSNP
rs1342623245 2376 dbSNP
rs1299377131 2379 dbSNP
rs1386310003 2383 dbSNP
rs1391475142 2386 dbSNP
rs1295343595 2387 dbSNP
rs1337589166 2397 dbSNP
rs1398023319 2401 dbSNP
rs1195273302 2425 dbSNP
rs2602794 2430 dbSNP
rs1374442724 2435 dbSNP
rs1196260094 2451 dbSNP
rs1432116542 2457 dbSNP
rs1486906417 2465 dbSNP
rs1209181163 2476 dbSNP
rs1215013748 2493 dbSNP
rs1456867787 2493 dbSNP
rs71405529 2493 dbSNP
rs1465071086 2498 dbSNP
rs1165321878 2503 dbSNP
rs1257203731 2503 dbSNP
rs1182943270 2505 dbSNP
rs71412843 2506 dbSNP
rs114925184 2507 dbSNP
rs1232867770 2507 dbSNP
rs756390932 2507 dbSNP
rs1438939712 2508 dbSNP
rs184936423 2513 dbSNP
rs1444642862 2517 dbSNP
rs1374401329 2522 dbSNP
rs1474177130 2524 dbSNP
rs11648 2558 dbSNP
rs1465976223 2568 dbSNP
rs1398302038 2571 dbSNP
rs1376011107 2580 dbSNP
rs1436439717 2585 dbSNP
rs1377828669 2592 dbSNP
rs1194969131 2597 dbSNP
rs1437203028 2602 dbSNP
rs1179753637 2609 dbSNP
rs1238130601 2609 dbSNP
rs1310879411 2619 dbSNP
rs1440034459 2625 dbSNP
rs1254566313 2632 dbSNP
rs1374576358 2641 dbSNP
rs1346054748 2646 dbSNP
rs1282670160 2655 dbSNP
rs1382552552 2656 dbSNP
rs892939840 2660 dbSNP
rs1308474433 2661 dbSNP
rs1298051558 2665 dbSNP
rs1447488949 2674 dbSNP
rs1337457057 2682 dbSNP
rs1324905793 2685 dbSNP
rs1395178447 2688 dbSNP
rs1226803929 2690 dbSNP
rs567935918 2703 dbSNP
rs1350719506 2709 dbSNP
rs1011390530 2717 dbSNP
rs1232677177 2724 dbSNP
rs1158687029 2725 dbSNP
rs1020149094 2727 dbSNP
rs1187303349 2728 dbSNP
rs1443290946 2729 dbSNP
rs967304900 2731 dbSNP
rs1214667811 2733 dbSNP
rs1488073897 2734 dbSNP
rs1280214844 2736 dbSNP
rs372481344 2737 dbSNP
rs1352766750 2747 dbSNP
rs1282288000 2749 dbSNP
rs1002796614 2765 dbSNP
rs1355796652 2782 dbSNP
rs1314461689 2787 dbSNP
rs1397792516 2803 dbSNP
rs1036115904 2807 dbSNP
rs1263475420 2816 dbSNP
rs1299622380 2818 dbSNP
rs1412273162 2820 dbSNP
rs958796724 2820 dbSNP
rs1326809910 2823 dbSNP
rs991967176 2831 dbSNP
rs1444869967 2838 dbSNP
rs1420539478 2841 dbSNP
rs2602793 2843 dbSNP
rs200602730 2867 dbSNP
rs370608674 2867 dbSNP
rs1455552575 2868 dbSNP
rs1218044949 2875 dbSNP
rs1449897437 2882 dbSNP
rs920052465 2887 dbSNP
rs576229595 2889 dbSNP
rs1171743711 2900 dbSNP
rs1335357484 2903 dbSNP
rs4021840 2923 dbSNP
rs1394374167 2925 dbSNP
rs982988704 2927 dbSNP
rs537504984 2938 dbSNP
rs557445176 2942 dbSNP
rs1454181655 2943 dbSNP
rs573900735 2948 dbSNP
rs189831441 2952 dbSNP
rs1462466843 2954 dbSNP
rs1381822154 2955 dbSNP
rs1326688121 2956 dbSNP
rs1373346651 2958 dbSNP
rs1040032654 2960 dbSNP
rs1232136979 2971 dbSNP
rs1465368608 2976 dbSNP
rs1188451727 2986 dbSNP
rs922947585 2986 dbSNP
rs1246238343 3006 dbSNP
rs931690157 3006 dbSNP
rs1199664839 3011 dbSNP
rs377475639 3022 dbSNP
rs892918576 3026 dbSNP
rs1241647832 3036 dbSNP
rs1011360851 3037 dbSNP
rs1348142269 3043 dbSNP
rs1207661130 3044 dbSNP
rs540203487 3048 dbSNP
rs559927451 3050 dbSNP
rs1273802630 3051 dbSNP
rs1440928299 3054 dbSNP
rs1373831904 3067 dbSNP
rs1329856867 3077 dbSNP
rs1002765137 3079 dbSNP
rs573869048 3080 dbSNP
rs754125831 3081 dbSNP
rs538293358 3089 dbSNP
rs986527941 3090 dbSNP
rs1018008831 3098 dbSNP
rs1424706497 3100 dbSNP
rs1012953669 3104 dbSNP
rs1027482609 3105 dbSNP
rs963761093 3111 dbSNP
rs1254853564 3125 dbSNP
rs1176653491 3129 dbSNP
rs952776245 3133 dbSNP
rs1161059570 3140 dbSNP
rs1206356800 3143 dbSNP
rs781528349 3151 dbSNP
rs1234422016 3152 dbSNP
rs1456486694 3180 dbSNP
rs1349357015 3184 dbSNP
rs965595198 3188 dbSNP
rs919720679 3190 dbSNP
rs1396952011 3198 dbSNP
rs929912639 3204 dbSNP
rs1300324859 3208 dbSNP
rs921556453 3210 dbSNP
rs931630118 3215 dbSNP
rs1436688077 3218 dbSNP
rs914266228 3218 dbSNP
rs985851973 3218 dbSNP
rs947152860 3225 dbSNP
rs1408610607 3226 dbSNP
rs1178731561 3229 dbSNP
rs1482129393 3233 dbSNP
rs1374703875 3234 dbSNP
rs983079637 3236 dbSNP
rs1211215940 3238 dbSNP
rs1486428743 3239 dbSNP
rs907886779 3240 dbSNP
rs1238771572 3241 dbSNP
rs1318059999 3245 dbSNP
rs150073890 3247 dbSNP
rs144868945 3248 dbSNP
rs938549248 3254 dbSNP
rs1313850338 3256 dbSNP
rs531554206 3259 dbSNP
rs1305342565 3260 dbSNP
rs1358856880 3262 dbSNP
rs1297723452 3263 dbSNP
rs1057418295 3271 dbSNP
rs753090409 3275 dbSNP
rs1161135796 3276 dbSNP
rs1416946360 3278 dbSNP
rs894431993 3278 dbSNP
rs1013294064 3285 dbSNP
rs950057260 3286 dbSNP
rs1045742583 3288 dbSNP
rs149035876 3289 dbSNP
rs1263043740 3295 dbSNP
rs4952168 3298 dbSNP
rs937416569 3299 dbSNP
rs1294362868 3308 dbSNP
rs565358950 3310 dbSNP
rs1211295370 3311 dbSNP
rs1054640342 3314 dbSNP
rs181100623 3324 dbSNP
rs1264308597 3329 dbSNP
rs1364231473 3330 dbSNP
rs748164770 3340 dbSNP
rs1456386358 3343 dbSNP
rs1393620205 3344 dbSNP
rs976978376 3351 dbSNP
rs143061809 3352 dbSNP
rs1421064459 3358 dbSNP
rs1248284030 3366 dbSNP
rs1191969924 3373 dbSNP
rs1010506477 3388 dbSNP
rs954320861 3390 dbSNP
rs1020927115 3391 dbSNP
rs986165520 3393 dbSNP
rs1468471653 3398 dbSNP
rs1274291882 3408 dbSNP
rs138605079 3410 dbSNP
rs1316393833 3411 dbSNP
rs1420306009 3416 dbSNP
rs914258970 3424 dbSNP
rs1164216964 3425 dbSNP
rs1328421591 3428 dbSNP
rs879883797 3432 dbSNP
rs1386222738 3433 dbSNP
rs1355142283 3443 dbSNP
rs1326454508 3446 dbSNP
rs947079376 3451 dbSNP
rs1397912666 3459 dbSNP
rs35863705 3460 dbSNP
rs924398117 3460 dbSNP
rs938516348 3460 dbSNP
rs977129986 3460 dbSNP
rs754660773 3462 dbSNP
rs1453200584 3479 dbSNP
rs1017886854 3480 dbSNP
rs1254200231 3488 dbSNP
rs556703732 3494 dbSNP
rs530369733 3502 dbSNP
rs1026838200 3505 dbSNP
rs1286 3508 dbSNP
rs757964244 3522 dbSNP
rs1295440175 3528 dbSNP
rs1357006814 3532 dbSNP
rs11558822 3534 dbSNP
rs982621281 3539 dbSNP
rs569879277 3541 dbSNP
rs184514649 3552 dbSNP
rs1328000973 3553 dbSNP
rs949281728 3555 dbSNP
rs57797549 3557 dbSNP
rs927246873 3564 dbSNP
rs1398194069 3574 dbSNP
rs937447159 3587 dbSNP
rs1433689163 3592 dbSNP
rs1054924422 3600 dbSNP
rs1174970798 3604 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 253558.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000309052.4 | 3UTR | AUAUUUUGCACUUAAUUUUGUGGGAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000309052.4 | 3UTR | AUAUUUUGCACUUAAUUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19350 CNS germ cell tumors -0.585 2.3e-2 -0.112 3.6e-1 12 Click to see details
GSE38226 Liver fibrosis -0.387 4.2e-2 -0.396 3.8e-2 21 Click to see details
GSE17306 Multiple myeloma 0.236 5.1e-2 0.434 9.2e-4 49 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.831 8.4e-2 -0.600 2.0e-1 4 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.264 1.0e-1 0.052 4.0e-1 25 Click to see details
GSE21687 Ependynoma primary tumors 0.145 1.3e-1 0.065 3.0e-1 64 Click to see details
GSE28544 Breast cancer 0.201 1.7e-1 0.221 1.5e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.186 2.0e-1 -0.162 2.3e-1 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.141 2.8e-1 -0.044 4.3e-1 20 Click to see details
GSE28260 Renal cortex and medulla 0.177 2.8e-1 0.016 4.8e-1 13 Click to see details
GSE32688 Pancreatic cancer -0.074 3.4e-1 -0.125 2.5e-1 32 Click to see details
GSE21849 B cell lymphoma -0.059 3.8e-1 0.294 6.1e-2 29 Click to see details
GSE26953 Aortic valvular endothelial cells -0.061 3.9e-1 -0.155 2.3e-1 24 Click to see details
GSE14794 Lymphoblastoid cells -0.024 4.1e-1 -0.032 3.8e-1 90 Click to see details
GSE27834 Pluripotent stem cells -0.06 4.1e-1 0.053 4.2e-1 16 Click to see details
GSE27834 Pluripotent stem cells -0.06 4.1e-1 0.053 4.2e-1 16 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
109 hsa-miR-302b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088427 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT142406 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT162006 TFRC transferrin receptor 2 2
MIRT170893 PURB purine rich element binding protein B 2 2
MIRT203348 CCNT2 cyclin T2 2 4
MIRT207353 TGOLN2 trans-golgi network protein 2 2 2
MIRT208232 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT214733 HSPA9 heat shock protein family A (Hsp70) member 9 2 2
MIRT254842 NUP50 nucleoporin 50 2 2
MIRT257285 FOXC1 forkhead box C1 2 2
MIRT338890 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT400032 USP37 ubiquitin specific peptidase 37 2 2
MIRT404031 ATP9A ATPase phospholipid transporting 9A (putative) 2 8
MIRT405843 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 2
MIRT445847 FPGT fucose-1-phosphate guanylyltransferase 2 2
MIRT446350 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446649 BTBD7 BTB domain containing 7 2 2
MIRT447925 SCRN1 secernin 1 2 2
MIRT448575 PLCG1 phospholipase C gamma 1 2 2
MIRT463616 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT465782 TMOD3 tropomodulin 3 2 2
MIRT470261 PRR14L proline rich 14 like 2 2
MIRT471090 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT475612 HMGB1 high mobility group box 1 2 2
MIRT476824 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT483107 TYRP1 tyrosinase related protein 1 2 10
MIRT500537 XPO4 exportin 4 2 2
MIRT502525 EPHA2 EPH receptor A2 2 4
MIRT510989 PER1 period circadian clock 1 2 4
MIRT512540 ZNF793 zinc finger protein 793 2 4
MIRT513868 HOXA5 homeobox A5 2 2
MIRT520756 TFDP1 transcription factor Dp-1 2 6
MIRT524304 CTC1 CST telomere replication complex component 1 2 8
MIRT526306 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526378 LSAMP limbic system-associated membrane protein 2 2
MIRT527438 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527511 ZNF134 zinc finger protein 134 2 2
MIRT528068 HES2 hes family bHLH transcription factor 2 2 2
MIRT528367 ZMYM1 zinc finger MYM-type containing 1 2 4
MIRT531804 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT532323 DUSP4 dual specificity phosphatase 4 2 2
MIRT532431 DHX33 DEAH-box helicase 33 2 2
MIRT534523 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT536660 INIP INTS3 and NABP interacting protein 2 2
MIRT538488 CLOCK clock circadian regulator 2 2
MIRT538593 CDK6 cyclin dependent kinase 6 2 2
MIRT539706 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540306 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT546892 PURA purine rich element binding protein A 2 2
MIRT552738 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552781 YIPF6 Yip1 domain family member 6 2 2
MIRT553742 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 4
MIRT553909 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT554540 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT555319 PPP2CB protein phosphatase 2 catalytic subunit beta 2 2
MIRT555512 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT556221 MB21D2 Mab-21 domain containing 2 2 2
MIRT556292 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT556606 LDOC1L retrotransposon Gag like 6 2 4
MIRT556901 ISOC1 isochorismatase domain containing 1 2 2
MIRT557675 GATA6 GATA binding protein 6 2 2
MIRT560198 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT560493 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT566069 RCC2 regulator of chromosome condensation 2 2 2
MIRT568431 GDNF glial cell derived neurotrophic factor 2 2
MIRT570703 FAM69A family with sequence similarity 69 member A 2 2
MIRT571705 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough 2 2
MIRT573152 ITGA9 integrin subunit alpha 9 2 2
MIRT574410 TFAP2A transcription factor AP-2 alpha 2 2
MIRT614823 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616507 COX7A2L cytochrome c oxidase subunit 7A2 like 2 2
MIRT618301 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT621188 FAM153B family with sequence similarity 153 member B 2 2
MIRT621594 WT1 Wilms tumor 1 2 2
MIRT623814 GGCX gamma-glutamyl carboxylase 2 2
MIRT624407 CCDC171 coiled-coil domain containing 171 2 2
MIRT625136 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT626121 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626874 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627874 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT633670 FAM53B family with sequence similarity 53 member B 2 2
MIRT634285 SYAP1 synapse associated protein 1 2 2
MIRT640925 POU2F1 POU class 2 homeobox 1 2 2
MIRT642028 MYADM myeloid associated differentiation marker 2 2
MIRT643031 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT646122 SLC26A9 solute carrier family 26 member 9 2 2
MIRT646245 SNAP47 synaptosome associated protein 47 2 2
MIRT652457 TMEM2 transmembrane protein 2 2 2
MIRT657018 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT660586 APP amyloid beta precursor protein 2 2
MIRT664316 CD209 CD209 molecule 2 2
MIRT667113 OLA1 Obg like ATPase 1 2 2
MIRT668773 DCP2 decapping mRNA 2 2 2
MIRT698430 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT700216 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT710498 CAPRIN1 cell cycle associated protein 1 2 2
MIRT711836 AMOTL2 angiomotin like 2 2 2
MIRT713226 GPR75 G protein-coupled receptor 75 2 2
MIRT714415 TBC1D16 TBC1 domain family member 16 2 2
MIRT714490 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT715254 F9 coagulation factor IX 2 2
MIRT716250 PALM2 paralemmin 2 2 2
MIRT717261 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT717730 FGF1 fibroblast growth factor 1 2 2
MIRT719262 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719398 SLC15A4 solute carrier family 15 member 4 2 2
MIRT720653 TMEM218 transmembrane protein 218 2 2
MIRT720777 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722059 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-302b Epirubicin approved 41867 Microarray osteosarcoma cells 23845851 2013 down-regualted
miR-302b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 up-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-302b (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-302b Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-302b-5p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-302b-5p Celastrol 12302620 NSC70931 sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Docetaxel 148124 NSC628503 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Doxorubicin 31703 NSC123127 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Taxol 36314 NSC125973 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-302b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-302b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-302b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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