miRTarBase - #MIRT091804


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pre-miRNA Information
pre-miRNA hsa-mir-4666a   
Genomic Coordinates chr1: 228462074 - 228462152
Description Homo sapiens miR-4666a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4666a-5p
Sequence 10| AUACAUGUCAGAUUGUAUGCC |30
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1288210208 3 dbSNP
rs1333314792 5 dbSNP
rs562096649 7 dbSNP
rs1324809033 10 dbSNP
rs1027635037 13 dbSNP
rs1351630778 15 dbSNP
rs1034879562 18 dbSNP
rs1383267208 21 dbSNP
Putative Targets

Gene Information
Gene Symbol GOLGA4   
Synonyms CRPF46, GCP2, GOLG, MU-RMS-40.18, p230
Description golgin A4
Transcript NM_002078   
Other Transcripts NM_001172713   
Expression
Putative miRNA Targets on GOLGA4
3'UTR of GOLGA4
(miRNA target sites are highlighted)		 
>GOLGA4|NM_002078|3'UTR
   1 GTAAACCATCAGTCTGTGCTTAGTTAACATGTGTCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGGGTGACTG
  81 CTGCTTGGAAAACTGTCCACACTTGCTACTCTTTGAGAATGAAGTTGTCATTCAGGGCCCCTCATGTAGCCAAAAGACCA
 161 AGAAAAATCTGGCCCACAGATAAGTTGCAGACTGCCTTTAAAATAGATTTTATCAGTGGAGAAATGGTGATAGTTTTTTC
 241 TTCAGTTTTCTCTTGGGAAGAGTTTTATGTTGTTTAAAAGATATTTTGATAACTTAACCTGCTTTATGGGCTTACATAAT
 321 ATTCCTTTCATCCATTCTTTTTAAAGAACGGCTTACCTTTCCTATTTATTTTTAGGGTGATTTTTTAAAAAGACTTGTGC
 401 AATACATTTTGAGGTGAAACTTAGTGGATTTTTTCTGATAAATTAGAGCATTTAATTGACTATTTTATTCAGGTTGATCT
 481 GTTGAATATTTGCTAAAGACCAGTTCTTTAAGCTAAGACATGTAAAAAATCCCAAATGGCAGTACCTCATTGTTTACTTA
 561 GCTTTTGTACTTATATTTTTCAGAGGAAAAAACACTACTGTAAATTGTGAATAGCCAATACATAACTGTATTGTATGCAA
 641 ATCTGTGATTGTTGGCAGTGTCATCTCTGAGAAACAGATAAATAAAGTTTATTTACTATATAACATTTGTTTATTGTACT
 721 TGTTCCTCAGTTGAAATCTATTTTAAAATGTTTAAGAATGCATATTCTATTTGGATGAATTTAGTGAGGAATTATTTGTC
 801 AATATAACTAAATGCTGAGCATTTGAAAAGAAT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccguAUGUUAGA--CUGUACAUa 5'
              | :|| ||  |||||||| 
Target 5' gttcTTTAAGCTAAGACATGTAa 3'
 503 - 525 155.00 -8.80
2 
miRNA  3' ccGUAUGUUAGAC----------UGUACAUa 5'
            ||| ||:||||          ||||||: 
Target 5' acCAT-CAGTCTGTGCTTAGTTAACATGTGt 3'
 5 - 34 136.00 -15.30
3 
miRNA  3' ccguauguuagacuGUACAUa 5'
                        |||||| 
Target 5' cattcagggcccctCATGTAg 3'
 129 - 149 120.00 -6.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26556198 32 COSMIC
COSN26567405 44 COSMIC
COSN21447536 148 COSMIC
COSN24393960 157 COSMIC
COSN1948569 384 COSMIC
COSN1276531 434 COSMIC
COSN26069243 920 COSMIC
COSN18891140 958 COSMIC
COSN28384092 972 COSMIC
COSN19139380 974 COSMIC
COSN32173141 1075 COSMIC
COSN8925449 1126 COSMIC
COSN23438303 1281 COSMIC
COSN7761749 1304 COSMIC
COSN32173142 1343 COSMIC
COSN16431866 1441 COSMIC
COSN27944285 1523 COSMIC
COSN18758941 1529 COSMIC
COSN1948570 2067 COSMIC
COSN4913804 2335 COSMIC
COSN16096887 2385 COSMIC
COSN20856281 2555 COSMIC
COSN24091930 2867 COSMIC
COSN27595665 3337 COSMIC
COSN7607915 3492 COSMIC
COSN15739904 4390 COSMIC
COSN21181177 4423 COSMIC
COSN27434088 4544 COSMIC
COSN24309463 4674 COSMIC
COSN30553714 4769 COSMIC
COSN18945928 4779 COSMIC
COSN23022380 4806 COSMIC
COSN14061656 4830 COSMIC
COSN31480810 4937 COSMIC
COSN31547808 4981 COSMIC
COSN19628202 5027 COSMIC
COSN31524639 5073 COSMIC
COSN30538726 5108 COSMIC
COSN31519831 5126 COSMIC
COSN31583371 5218 COSMIC
COSN20090781 5270 COSMIC
COSN20090782 5271 COSMIC
COSN20090783 5281 COSMIC
COSN20090785 5286 COSMIC
COSN20090787 5291 COSMIC
COSN20090788 5293 COSMIC
COSN20090789 5301 COSMIC
COSN20090791 5303 COSMIC
COSN20090792 5320 COSMIC
COSN20090793 5321 COSMIC
COSN20090795 5332 COSMIC
COSN20090796 5384 COSMIC
COSN31485137 5396 COSMIC
COSN20090798 5402 COSMIC
COSN26563844 5408 COSMIC
COSN14814797 5424 COSMIC
COSN26565982 5426 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1406987832 6 dbSNP
rs73825094 7 dbSNP
rs759151268 9 dbSNP
rs767118021 11 dbSNP
rs752232425 15 dbSNP
rs755641307 17 dbSNP
rs1470483197 19 dbSNP
rs77152934 22 dbSNP
rs757850120 25 dbSNP
rs766059383 27 dbSNP
rs1224086594 28 dbSNP
rs1291987549 29 dbSNP
rs968973767 30 dbSNP
rs1490093341 31 dbSNP
rs779369362 34 dbSNP
rs1269322714 35 dbSNP
rs746264394 38 dbSNP
rs899858549 42 dbSNP
rs1419584051 47 dbSNP
rs758661279 48 dbSNP
rs535555376 49 dbSNP
rs751664219 50 dbSNP
rs1378423662 51 dbSNP
rs1426577945 52 dbSNP
rs751565848 53 dbSNP
rs1488049878 57 dbSNP
rs979359734 60 dbSNP
rs1427611346 65 dbSNP
rs1206925736 77 dbSNP
rs924788337 84 dbSNP
rs1424812397 85 dbSNP
rs553864528 86 dbSNP
rs1187803626 91 dbSNP
rs1255965581 92 dbSNP
rs1053757315 111 dbSNP
rs956488171 113 dbSNP
rs987845830 117 dbSNP
rs922992271 118 dbSNP
rs572075867 124 dbSNP
rs539483721 136 dbSNP
rs1337894620 137 dbSNP
rs1162316524 144 dbSNP
rs893912729 148 dbSNP
rs1400839405 151 dbSNP
rs1170811872 158 dbSNP
rs1361116160 158 dbSNP
rs1009613481 162 dbSNP
rs145618965 164 dbSNP
rs780950624 169 dbSNP
rs1195555513 178 dbSNP
rs1447705152 190 dbSNP
rs1255554539 191 dbSNP
rs577498938 192 dbSNP
rs910485249 194 dbSNP
rs78133837 206 dbSNP
rs1264167148 209 dbSNP
rs1218359990 210 dbSNP
rs1316411774 211 dbSNP
rs1037973263 213 dbSNP
rs897656423 217 dbSNP
rs1339440176 225 dbSNP
rs568394661 225 dbSNP
rs769699474 229 dbSNP
rs1406670881 232 dbSNP
rs563118345 234 dbSNP
rs1463906811 242 dbSNP
rs1425478972 245 dbSNP
rs1169926439 252 dbSNP
rs1475826637 254 dbSNP
rs959588062 255 dbSNP
rs1385173290 256 dbSNP
rs1236988598 263 dbSNP
rs1185447493 267 dbSNP
rs973062191 268 dbSNP
rs895873680 277 dbSNP
rs1012940125 278 dbSNP
rs775342899 283 dbSNP
rs1022946431 285 dbSNP
rs1275551511 286 dbSNP
rs3774761 294 dbSNP
rs1027238284 304 dbSNP
rs1243884326 308 dbSNP
rs950528714 312 dbSNP
rs1281949654 314 dbSNP
rs1247485332 315 dbSNP
rs1314405319 320 dbSNP
rs983215891 321 dbSNP
rs1355100917 322 dbSNP
rs1330649711 324 dbSNP
rs911755927 336 dbSNP
rs1000442598 337 dbSNP
rs760586192 337 dbSNP
rs1356067364 341 dbSNP
rs867950411 355 dbSNP
rs1259405196 363 dbSNP
rs1329229526 364 dbSNP
rs1410764208 365 dbSNP
rs1485745139 367 dbSNP
rs1032294749 369 dbSNP
rs574900375 377 dbSNP
rs1385922996 380 dbSNP
rs956208802 381 dbSNP
rs944538906 382 dbSNP
rs976861449 385 dbSNP
rs1234979625 388 dbSNP
rs1450718283 389 dbSNP
rs975096157 389 dbSNP
rs1182479688 405 dbSNP
rs541928894 406 dbSNP
rs954446038 409 dbSNP
rs986231326 413 dbSNP
rs910211719 416 dbSNP
rs941982136 421 dbSNP
rs1037627766 433 dbSNP
rs144384981 434 dbSNP
rs1375377260 452 dbSNP
rs935878321 459 dbSNP
rs1053787001 460 dbSNP
rs564621979 461 dbSNP
rs893775793 462 dbSNP
rs1056962207 463 dbSNP
rs1366283134 467 dbSNP
rs895926193 472 dbSNP
rs1417878965 478 dbSNP
rs1338387887 487 dbSNP
rs945486488 500 dbSNP
rs3774762 501 dbSNP
rs1343403386 502 dbSNP
rs906717434 513 dbSNP
rs1003701041 520 dbSNP
rs1044823292 527 dbSNP
rs1314524544 531 dbSNP
rs772092958 533 dbSNP
rs1284713414 537 dbSNP
rs895406230 541 dbSNP
rs904519004 554 dbSNP
rs1318165136 557 dbSNP
rs1226046589 560 dbSNP
rs1284925705 562 dbSNP
rs74802967 569 dbSNP
rs148783029 572 dbSNP
rs892025472 577 dbSNP
rs186314364 578 dbSNP
rs1459734460 582 dbSNP
rs1202615428 583 dbSNP
rs1347018828 589 dbSNP
rs1029775225 598 dbSNP
rs565366275 602 dbSNP
rs1053694144 603 dbSNP
rs1427645656 605 dbSNP
rs191664763 609 dbSNP
rs892250733 613 dbSNP
rs1262069214 620 dbSNP
rs1017734200 627 dbSNP
rs966159715 629 dbSNP
rs1242184614 630 dbSNP
rs1209336122 633 dbSNP
rs1310311326 637 dbSNP
rs183771122 645 dbSNP
rs919193574 650 dbSNP
rs4624520 651 dbSNP
rs1468491537 652 dbSNP
rs1277858960 655 dbSNP
rs1380733563 658 dbSNP
rs992689587 660 dbSNP
rs917077673 664 dbSNP
rs1289324375 666 dbSNP
rs1447970567 670 dbSNP
rs1355270275 673 dbSNP
rs948854554 679 dbSNP
rs1044486711 687 dbSNP
rs1444480541 694 dbSNP
rs957279418 695 dbSNP
rs990057175 702 dbSNP
rs1419624923 703 dbSNP
rs904570273 704 dbSNP
rs1021961250 708 dbSNP
rs11929591 717 dbSNP
rs1053513130 720 dbSNP
rs892077364 724 dbSNP
rs1042893636 725 dbSNP
rs928083514 729 dbSNP
rs998387237 736 dbSNP
rs1225525946 744 dbSNP
rs1309426123 750 dbSNP
rs1029824578 755 dbSNP
rs939392982 757 dbSNP
rs1321836830 760 dbSNP
rs1380647338 778 dbSNP
rs539522705 787 dbSNP
rs895311421 788 dbSNP
rs1400029799 794 dbSNP
rs1296749535 801 dbSNP
rs557813979 803 dbSNP
rs1049286075 808 dbSNP
rs886135827 809 dbSNP
rs973115775 819 dbSNP
rs1004567235 820 dbSNP
rs188322516 824 dbSNP
rs950646124 827 dbSNP
rs965824318 830 dbSNP
rs1197290669 844 dbSNP
rs191594471 849 dbSNP
rs1252156585 854 dbSNP
rs1266598157 857 dbSNP
rs1357454928 874 dbSNP
rs1317161628 876 dbSNP
rs948587615 878 dbSNP
rs115545411 882 dbSNP
rs1171056814 896 dbSNP
rs967706121 898 dbSNP
rs1420523569 899 dbSNP
rs1305354839 900 dbSNP
rs957188870 903 dbSNP
rs1393543506 905 dbSNP
rs926085184 913 dbSNP
rs1422358546 914 dbSNP
rs990088610 914 dbSNP
rs913135037 916 dbSNP
rs1366899843 922 dbSNP
rs1163607731 926 dbSNP
rs1183872914 926 dbSNP
rs1294067274 926 dbSNP
rs1419047698 926 dbSNP
rs1419513893 926 dbSNP
rs144532752 926 dbSNP
rs1489903774 926 dbSNP
rs369498548 926 dbSNP
rs748075114 926 dbSNP
rs1223269774 930 dbSNP
rs1053085923 931 dbSNP
rs1259539718 933 dbSNP
rs891795487 934 dbSNP
rs1336793379 935 dbSNP
rs1353990534 935 dbSNP
rs1406155021 937 dbSNP
rs1346952491 938 dbSNP
rs1402735138 938 dbSNP
rs1305483364 939 dbSNP
rs967671163 942 dbSNP
rs1398900349 943 dbSNP
rs978120744 944 dbSNP
rs867463100 946 dbSNP
rs569050244 950 dbSNP
rs776752475 950 dbSNP
rs1376866772 951 dbSNP
rs1173923257 952 dbSNP
rs1404731978 953 dbSNP
rs372548722 953 dbSNP
rs1200387187 954 dbSNP
rs1259743643 954 dbSNP
rs1446560856 954 dbSNP
rs375754666 954 dbSNP
rs1207415127 955 dbSNP
rs1351954378 956 dbSNP
rs939472712 956 dbSNP
rs1262937719 957 dbSNP
rs201786714 957 dbSNP
rs1283590312 958 dbSNP
rs1326072124 958 dbSNP
rs200220594 958 dbSNP
rs1429586112 959 dbSNP
rs1324175537 960 dbSNP
rs1334573403 961 dbSNP
rs1382729857 961 dbSNP
rs1401355859 961 dbSNP
rs574980534 961 dbSNP
rs1418209922 962 dbSNP
rs1470863686 962 dbSNP
rs1475170245 962 dbSNP
rs201242378 962 dbSNP
rs1195359238 963 dbSNP
rs1271084747 963 dbSNP
rs1371421701 963 dbSNP
rs1363671861 964 dbSNP
rs1202315359 965 dbSNP
rs1462987103 965 dbSNP
rs868723973 965 dbSNP
rs1227567227 966 dbSNP
rs1264069172 966 dbSNP
rs1271458379 966 dbSNP
rs1336983790 966 dbSNP
rs1212403724 968 dbSNP
rs1312912999 969 dbSNP
rs1330358859 969 dbSNP
rs1406554475 969 dbSNP
rs773620319 969 dbSNP
rs1169842308 970 dbSNP
rs542065464 970 dbSNP
rs1271752916 971 dbSNP
rs1475815197 971 dbSNP
rs11709735 972 dbSNP
rs1446910369 972 dbSNP
rs1244151208 973 dbSNP
rs1204213536 974 dbSNP
rs560299504 975 dbSNP
rs933954770 976 dbSNP
rs1223991567 981 dbSNP
rs76737791 983 dbSNP
rs1289525294 984 dbSNP
rs572236495 988 dbSNP
rs1288882800 989 dbSNP
rs1226660476 995 dbSNP
rs1194158056 996 dbSNP
rs1243602626 997 dbSNP
rs866555791 1004 dbSNP
rs1051294560 1005 dbSNP
rs986688864 1018 dbSNP
rs1331205100 1022 dbSNP
rs1418978813 1026 dbSNP
rs1365050810 1027 dbSNP
rs1425385308 1029 dbSNP
rs1427142399 1031 dbSNP
rs558720833 1032 dbSNP
rs1386450047 1034 dbSNP
rs1468979684 1035 dbSNP
rs1234959826 1038 dbSNP
rs1165485340 1039 dbSNP
rs1490069041 1043 dbSNP
rs1364271442 1051 dbSNP
rs1359500971 1052 dbSNP
rs1283538275 1058 dbSNP
rs1424536316 1059 dbSNP
rs1221998637 1061 dbSNP
rs11129758 1066 dbSNP
rs865967290 1067 dbSNP
rs1428297046 1069 dbSNP
rs1410690551 1074 dbSNP
rs1345070911 1080 dbSNP
rs1301487278 1086 dbSNP
rs1269238056 1092 dbSNP
rs1382996390 1110 dbSNP
rs1247568301 1111 dbSNP
rs1312233002 1112 dbSNP
rs1358695668 1114 dbSNP
rs1205625098 1115 dbSNP
rs1479924548 1119 dbSNP
rs545866828 1122 dbSNP
rs1445061239 1123 dbSNP
rs890007393 1126 dbSNP
rs1214726646 1127 dbSNP
rs1241757770 1132 dbSNP
rs1284725411 1138 dbSNP
rs1222709634 1139 dbSNP
rs536412478 1141 dbSNP
rs1281678258 1150 dbSNP
rs1225580731 1151 dbSNP
rs1368406690 1152 dbSNP
rs1429272961 1159 dbSNP
rs1445409258 1159 dbSNP
rs1185530255 1160 dbSNP
rs1383421909 1163 dbSNP
rs1444610682 1167 dbSNP
rs1007076279 1170 dbSNP
rs1410718606 1171 dbSNP
rs1399339194 1173 dbSNP
rs1318018818 1178 dbSNP
rs1038924755 1180 dbSNP
rs1406403071 1190 dbSNP
rs898942145 1191 dbSNP
rs1202941025 1192 dbSNP
rs1454219839 1193 dbSNP
rs1264703906 1199 dbSNP
rs908362307 1200 dbSNP
rs1205825710 1204 dbSNP
rs1334178993 1205 dbSNP
rs994987719 1208 dbSNP
rs961200116 1209 dbSNP
rs867837438 1211 dbSNP
rs564522061 1212 dbSNP
rs1452460984 1215 dbSNP
rs1281216247 1216 dbSNP
rs1348380314 1218 dbSNP
rs1223021633 1220 dbSNP
rs1466259952 1221 dbSNP
rs749288500 1232 dbSNP
rs868475304 1235 dbSNP
rs1429834764 1243 dbSNP
rs1026022273 1244 dbSNP
rs1263481262 1247 dbSNP
rs950364132 1248 dbSNP
rs1205778544 1249 dbSNP
rs1480171891 1250 dbSNP
rs539995588 1253 dbSNP
rs186678579 1255 dbSNP
rs1309409064 1256 dbSNP
rs1182550295 1257 dbSNP
rs1366084028 1258 dbSNP
rs1024240261 1259 dbSNP
rs970362139 1261 dbSNP
rs541167891 1262 dbSNP
rs1373035372 1265 dbSNP
rs1296159384 1269 dbSNP
rs1422703387 1272 dbSNP
rs1463136606 1272 dbSNP
rs925772867 1272 dbSNP
rs979990934 1272 dbSNP
rs191125548 1276 dbSNP
rs1188142800 1277 dbSNP
rs114283032 1281 dbSNP
rs115920807 1282 dbSNP
rs1470785348 1283 dbSNP
rs112207042 1284 dbSNP
rs1484129142 1287 dbSNP
rs1252664229 1293 dbSNP
rs113882221 1298 dbSNP
rs934007233 1298 dbSNP
rs184763207 1300 dbSNP
rs1404815524 1302 dbSNP
rs1391476764 1308 dbSNP
rs1005503725 1311 dbSNP
rs188947866 1317 dbSNP
rs1038567695 1318 dbSNP
rs901496284 1319 dbSNP
rs1441351174 1340 dbSNP
rs995964119 1344 dbSNP
rs1350685404 1346 dbSNP
rs114863299 1347 dbSNP
rs1402617127 1348 dbSNP
rs957219459 1351 dbSNP
rs1011428335 1353 dbSNP
rs1452888218 1354 dbSNP
rs1020513064 1357 dbSNP
rs569641470 1361 dbSNP
rs1261516800 1363 dbSNP
rs1413032507 1369 dbSNP
rs967328561 1376 dbSNP
rs981758489 1378 dbSNP
rs1252721409 1379 dbSNP
rs1035067103 1392 dbSNP
rs1210971648 1396 dbSNP
rs960678164 1397 dbSNP
rs1047518189 1400 dbSNP
rs1230668242 1402 dbSNP
rs886159816 1403 dbSNP
rs990895227 1404 dbSNP
rs1182072090 1415 dbSNP
rs1013954411 1417 dbSNP
rs1024380169 1418 dbSNP
rs970037013 1418 dbSNP
rs1381609078 1422 dbSNP
rs1382746540 1423 dbSNP
rs1290531007 1432 dbSNP
rs536596784 1433 dbSNP
rs1175982274 1438 dbSNP
rs1479545163 1441 dbSNP
rs1379470495 1447 dbSNP
rs1199622704 1449 dbSNP
rs1032889250 1454 dbSNP
rs1376736498 1460 dbSNP
rs555338575 1466 dbSNP
rs1262841128 1467 dbSNP
rs1169182635 1476 dbSNP
rs193061463 1478 dbSNP
rs984976921 1481 dbSNP
rs1393661971 1482 dbSNP
rs185446517 1484 dbSNP
rs940984873 1485 dbSNP
rs1041022573 1486 dbSNP
rs901531508 1489 dbSNP
rs1405099732 1494 dbSNP
rs955438568 1502 dbSNP
rs986791492 1504 dbSNP
rs1173356112 1506 dbSNP
rs1402900539 1508 dbSNP
rs1229080683 1509 dbSNP
rs1276078424 1509 dbSNP
rs1312794332 1509 dbSNP
rs1335187484 1509 dbSNP
rs1340831712 1509 dbSNP
rs1375290747 1509 dbSNP
rs1381900728 1509 dbSNP
rs1450014470 1509 dbSNP
rs71094906 1509 dbSNP
rs75929434 1509 dbSNP
rs796938243 1510 dbSNP
rs1394441015 1514 dbSNP
rs1330787623 1524 dbSNP
rs76206785 1527 dbSNP
rs1170516926 1529 dbSNP
rs1246859413 1530 dbSNP
rs1255091067 1531 dbSNP
rs1253204111 1532 dbSNP
rs1337528067 1533 dbSNP
rs1162204737 1534 dbSNP
rs775348507 1535 dbSNP
rs574511418 1542 dbSNP
rs1180663395 1543 dbSNP
rs911205105 1550 dbSNP
rs1490969295 1551 dbSNP
rs1197752708 1553 dbSNP
rs1267071455 1558 dbSNP
rs1428794390 1560 dbSNP
rs1194855858 1561 dbSNP
rs1370905379 1567 dbSNP
rs1306362137 1572 dbSNP
rs1163618285 1574 dbSNP
rs1367410548 1576 dbSNP
rs1422637823 1578 dbSNP
rs1302366644 1580 dbSNP
rs1278680550 1585 dbSNP
rs1441784570 1589 dbSNP
rs553968058 1590 dbSNP
rs1039027252 1593 dbSNP
rs892909841 1593 dbSNP
rs533148559 1594 dbSNP
rs1410572892 1595 dbSNP
rs1322150464 1597 dbSNP
rs1011297163 1598 dbSNP
rs930140302 1611 dbSNP
rs1324848589 1612 dbSNP
rs1413785937 1616 dbSNP
rs1182436736 1618 dbSNP
rs1020150404 1621 dbSNP
rs1315771839 1622 dbSNP
rs572272113 1626 dbSNP
rs1266074364 1629 dbSNP
rs903014121 1634 dbSNP
rs189971892 1636 dbSNP
rs1283336584 1645 dbSNP
rs1221907339 1651 dbSNP
rs545903926 1651 dbSNP
rs1036005315 1652 dbSNP
rs1293109158 1660 dbSNP
rs1265281010 1661 dbSNP
rs1273101719 1665 dbSNP
rs1351014984 1667 dbSNP
rs958588752 1668 dbSNP
rs1486393987 1675 dbSNP
rs1207193220 1678 dbSNP
rs1259263858 1679 dbSNP
rs77439683 1683 dbSNP
rs1391283710 1685 dbSNP
rs1159451220 1687 dbSNP
rs1045443191 1701 dbSNP
rs1183716510 1702 dbSNP
rs1386538967 1703 dbSNP
rs201307359 1709 dbSNP
rs905531997 1712 dbSNP
rs576481029 1713 dbSNP
rs1163986717 1715 dbSNP
rs1001175533 1716 dbSNP
rs952136464 1719 dbSNP
rs1455165919 1720 dbSNP
rs1286850503 1725 dbSNP
rs181287005 1727 dbSNP
rs1434607865 1730 dbSNP
rs1270196509 1732 dbSNP
rs753194264 1733 dbSNP
rs1321587438 1736 dbSNP
rs940834635 1738 dbSNP
rs1244501202 1746 dbSNP
rs562095003 1747 dbSNP
rs758991506 1749 dbSNP
rs1317999391 1753 dbSNP
rs529229496 1754 dbSNP
rs1259305781 1756 dbSNP
rs541301950 1758 dbSNP
rs543424863 1759 dbSNP
rs1203893249 1762 dbSNP
rs1244516308 1763 dbSNP
rs1459596908 1764 dbSNP
rs932198448 1765 dbSNP
rs1251181301 1772 dbSNP
rs1420761773 1776 dbSNP
rs1050091020 1787 dbSNP
rs371859740 1790 dbSNP
rs1010049055 1791 dbSNP
rs112366359 1795 dbSNP
rs1041841903 1798 dbSNP
rs1452436379 1800 dbSNP
rs1177407238 1802 dbSNP
rs1304229670 1805 dbSNP
rs1448225055 1807 dbSNP
rs1218600536 1808 dbSNP
rs1445926621 1809 dbSNP
rs1353436784 1812 dbSNP
rs1166126523 1824 dbSNP
rs1302300123 1831 dbSNP
rs903047436 1834 dbSNP
rs1390764127 1835 dbSNP
rs1003133603 1856 dbSNP
rs986841777 1863 dbSNP
rs1421907015 1864 dbSNP
rs1257933710 1870 dbSNP
rs116173698 1874 dbSNP
rs1483675280 1875 dbSNP
rs532039344 1877 dbSNP
rs894402028 1879 dbSNP
rs1203163927 1881 dbSNP
rs1344384912 1884 dbSNP
rs36078971 1895 dbSNP
rs770240218 1896 dbSNP
rs952042562 1897 dbSNP
rs1006327932 1907 dbSNP
rs17265928 1911 dbSNP
rs1305773419 1923 dbSNP
rs188335485 1937 dbSNP
rs1370632631 1945 dbSNP
rs1208854128 1947 dbSNP
rs976674806 1952 dbSNP
rs565516937 1953 dbSNP
rs1165172440 1954 dbSNP
rs1418257843 1958 dbSNP
rs1175398073 1970 dbSNP
rs763333073 1972 dbSNP
rs923394352 1982 dbSNP
rs113963527 1993 dbSNP
rs1250884477 1994 dbSNP
rs1484077463 2001 dbSNP
rs1252553981 2003 dbSNP
rs766889323 2008 dbSNP
rs745543263 2011 dbSNP
rs1267721807 2012 dbSNP
rs541718429 2012 dbSNP
rs566894361 2024 dbSNP
rs78546127 2029 dbSNP
rs778459580 2033 dbSNP
rs554004430 2034 dbSNP
rs547515228 2035 dbSNP
rs749185456 2036 dbSNP
rs924375226 2037 dbSNP
rs759682587 2050 dbSNP
rs1175518235 2051 dbSNP
rs1282037376 2051 dbSNP
rs1385041764 2061 dbSNP
rs938407915 2066 dbSNP
rs1294022700 2067 dbSNP
rs1452869416 2069 dbSNP
rs1157231301 2070 dbSNP
rs937023561 2070 dbSNP
rs1464040133 2073 dbSNP
rs1306724054 2079 dbSNP
rs1350346618 2083 dbSNP
rs1431486763 2087 dbSNP
rs1270169871 2090 dbSNP
rs1210954684 2091 dbSNP
rs1056904315 2093 dbSNP
rs34195225 2101 dbSNP
rs1054111874 2104 dbSNP
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rs1010100242 2110 dbSNP
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rs1230503479 2114 dbSNP
rs1012823027 2115 dbSNP
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rs1464665906 2128 dbSNP
rs1048279050 2136 dbSNP
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rs1028984765 4883 dbSNP
rs953797045 4884 dbSNP
rs62241901 4902 dbSNP
rs1312803966 4909 dbSNP
rs189169271 4910 dbSNP
rs562554375 4912 dbSNP
rs1443552902 4913 dbSNP
rs1461197873 4914 dbSNP
rs1212854502 4916 dbSNP
rs149853599 4932 dbSNP
rs972207874 4940 dbSNP
rs981920633 4945 dbSNP
rs918361251 4952 dbSNP
rs1185693443 4958 dbSNP
rs926452437 4962 dbSNP
rs1443973653 4967 dbSNP
rs937967723 4971 dbSNP
rs1245703550 4978 dbSNP
rs758375751 4981 dbSNP
rs879021103 4993 dbSNP
rs1472681433 5000 dbSNP
rs1183285220 5003 dbSNP
rs1256636279 5004 dbSNP
rs1037606568 5006 dbSNP
rs1413772935 5008 dbSNP
rs182417759 5008 dbSNP
rs898520013 5023 dbSNP
rs1157850565 5027 dbSNP
rs748251255 5029 dbSNP
rs1402289692 5035 dbSNP
rs1289968884 5036 dbSNP
rs1480437672 5042 dbSNP
rs1415622736 5046 dbSNP
rs1332136614 5047 dbSNP
rs1256326565 5057 dbSNP
rs1220619933 5058 dbSNP
rs1358458761 5063 dbSNP
rs201534069 5064 dbSNP
rs1289946258 5066 dbSNP
rs1293270801 5073 dbSNP
rs1352609500 5080 dbSNP
rs751051300 5081 dbSNP
rs1226777923 5082 dbSNP
rs1279106690 5099 dbSNP
rs1345812948 5104 dbSNP
rs1220959558 5105 dbSNP
rs947692745 5109 dbSNP
rs1485614318 5111 dbSNP
rs370590545 5114 dbSNP
rs1047072468 5118 dbSNP
rs548176369 5120 dbSNP
rs1332946670 5124 dbSNP
rs144337023 5124 dbSNP
rs537193140 5125 dbSNP
rs903754993 5130 dbSNP
rs1019832276 5132 dbSNP
rs772325382 5140 dbSNP
rs1052260955 5143 dbSNP
rs373024148 5150 dbSNP
rs146575448 5152 dbSNP
rs1417081770 5154 dbSNP
rs1377789464 5155 dbSNP
rs997607317 5161 dbSNP
rs1200737365 5169 dbSNP
rs1032606979 5177 dbSNP
rs1272658148 5180 dbSNP
rs958506268 5191 dbSNP
rs552377272 5197 dbSNP
rs1424419461 5214 dbSNP
rs987825357 5221 dbSNP
rs1238867385 5224 dbSNP
rs1020545179 5229 dbSNP
rs1311059784 5233 dbSNP
rs376218967 5234 dbSNP
rs1393215955 5237 dbSNP
rs1321028533 5246 dbSNP
rs1406536337 5251 dbSNP
rs1391450480 5253 dbSNP
rs1451423715 5254 dbSNP
rs748533840 5254 dbSNP
rs1368462991 5260 dbSNP
rs1016550568 5261 dbSNP
rs772384047 5263 dbSNP
rs756153297 5266 dbSNP
rs1252542256 5277 dbSNP
rs1196847403 5287 dbSNP
rs1453397402 5291 dbSNP
rs926483587 5292 dbSNP
rs1328449507 5293 dbSNP
rs371419126 5294 dbSNP
rs960447673 5294 dbSNP
rs1288634075 5298 dbSNP
rs959223662 5299 dbSNP
rs1235550407 5301 dbSNP
rs1273132417 5303 dbSNP
rs1369794969 5308 dbSNP
rs973617110 5311 dbSNP
rs773640586 5318 dbSNP
rs1347868797 5320 dbSNP
rs1229782081 5321 dbSNP
rs991932443 5332 dbSNP
rs1438063746 5333 dbSNP
rs1331160486 5338 dbSNP
rs113334208 5344 dbSNP
rs570526001 5349 dbSNP
rs1267655560 5350 dbSNP
rs1452946772 5358 dbSNP
rs1196188644 5359 dbSNP
rs1251814817 5361 dbSNP
rs770378064 5375 dbSNP
rs769945073 5384 dbSNP
rs187027322 5386 dbSNP
rs1159036682 5388 dbSNP
rs944126303 5390 dbSNP
rs1041137271 5393 dbSNP
rs555939146 5396 dbSNP
rs1394774300 5397 dbSNP
rs773596198 5402 dbSNP
rs1163581786 5408 dbSNP
rs899884690 5415 dbSNP
rs3116 5424 dbSNP
rs1247332300 5425 dbSNP
rs771034455 5426 dbSNP
rs115578020 5429 dbSNP
rs1054321822 5434 dbSNP
rs556767511 5437 dbSNP
rs749461854 5452 dbSNP
rs116813806 5454 dbSNP
rs1220569045 5478 dbSNP
rs1227210968 5480 dbSNP
rs1020618809 5487 dbSNP
rs1397522865 5490 dbSNP
rs1358093426 5494 dbSNP
rs1298723541 5497 dbSNP
rs970350903 5503 dbSNP
rs933113858 5506 dbSNP
rs1050546021 5512 dbSNP
rs1416410017 5519 dbSNP
rs553785103 5521 dbSNP
rs1464966750 5525 dbSNP
rs1476880012 5528 dbSNP
rs1003276011 5536 dbSNP
rs1189880891 5542 dbSNP
rs1236120897 5552 dbSNP
rs889180429 5559 dbSNP
rs1427818326 5565 dbSNP
rs374602244 5566 dbSNP
rs1369975076 5577 dbSNP
rs1033449662 5579 dbSNP
rs780776528 5584 dbSNP
rs573605241 5586 dbSNP
rs1278819704 5592 dbSNP
rs973264843 5604 dbSNP
rs540539554 5605 dbSNP
rs1232570634 5607 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000361924.2 | 3UTR | UAAAAAAUCCCAAAUGGCAGUACCUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4666a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057266 FAM35A family with sequence similarity 35 member A 2 2
MIRT059969 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT079031 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT079631 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT086974 LANCL1 LanC like 1 2 2
MIRT091804 GOLGA4 golgin A4 2 2
MIRT229501 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT255972 WDR17 WD repeat domain 17 2 2
MIRT262975 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT264774 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT334169 CCND1 cyclin D1 2 6
MIRT345868 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT452477 DDX4 DEAD-box helicase 4 2 2
MIRT455764 TSPAN6 tetraspanin 6 2 4
MIRT461627 DCAF15 DDB1 and CUL4 associated factor 15 2 4
MIRT465169 TRPV2 transient receptor potential cation channel subfamily V member 2 2 4
MIRT468950 RPS14 ribosomal protein S14 2 6
MIRT483236 C2orf72 chromosome 2 open reading frame 72 2 8
MIRT498544 TMEM30B transmembrane protein 30B 2 2
MIRT500633 TXNIP thioredoxin interacting protein 2 4
MIRT504113 GPR158 G protein-coupled receptor 158 2 2
MIRT504428 ZNF85 zinc finger protein 85 2 6
MIRT505036 ZNF451 zinc finger protein 451 2 2
MIRT506526 MRPL17 mitochondrial ribosomal protein L17 2 6
MIRT508773 GSG1 germ cell associated 1 2 2
MIRT517297 ELF4 E74 like ETS transcription factor 4 2 6
MIRT519353 OBFC1 STN1, CST complex subunit 2 4
MIRT523891 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 6
MIRT527509 ZNF134 zinc finger protein 134 2 2
MIRT531218 IFNGR2 interferon gamma receptor 2 2 2
MIRT535957 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT537229 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 4
MIRT537337 FKBP5 FK506 binding protein 5 2 2
MIRT539125 ARHGEF17 Rho guanine nucleotide exchange factor 17 2 2
MIRT539910 ISPD isoprenoid synthase domain containing 2 2
MIRT541527 MGAT4C MGAT4 family member C 2 2
MIRT546119 USP25 ubiquitin specific peptidase 25 2 2
MIRT548846 CERCAM cerebral endothelial cell adhesion molecule 2 2
MIRT549892 LINC00955 long intergenic non-protein coding RNA 955 2 2
MIRT549898 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide 2 2
MIRT550763 ENOX2 ecto-NOX disulfide-thiol exchanger 2 2 4
MIRT553200 UBE2A ubiquitin conjugating enzyme E2 A 2 2
MIRT553970 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT554092 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555208 PROX1 prospero homeobox 1 2 4
MIRT555834 PAX5 paired box 5 2 4
MIRT556865 JAZF1 JAZF zinc finger 1 2 2
MIRT558594 CREBL2 cAMP responsive element binding protein like 2 2 2
MIRT559690 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT563312 ORC4 origin recognition complex subunit 4 2 2
MIRT563585 FAM229B family with sequence similarity 229 member B 2 2
MIRT563853 ALYREF Aly/REF export factor 2 4
MIRT565146 TUBB2A tubulin beta 2A class IIa 2 2
MIRT565769 SEPHS1 selenophosphate synthetase 1 2 2
MIRT568317 BACH1 BTB domain and CNC homolog 1 2 2
MIRT575387 Unc5b unc-5 netrin receptor B 2 4
MIRT607728 BDH1 3-hydroxybutyrate dehydrogenase 1 2 8
MIRT612691 PLXNA4 plexin A4 2 4
MIRT615916 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT629792 P2RY1 purinergic receptor P2Y1 2 2
MIRT632119 FKBP9 FK506 binding protein 9 2 2
MIRT645554 ZDHHC15 zinc finger DHHC-type containing 15 2 4
MIRT651479 WWC3 WWC family member 3 2 2
MIRT654138 RPH3A rabphilin 3A 2 6
MIRT655191 PHAX phosphorylated adaptor for RNA export 2 2
MIRT665543 UNC5B unc-5 netrin receptor B 2 5
MIRT668057 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT678978 CERS4 ceramide synthase 4 2 4
MIRT679124 RBM3 RNA binding motif (RNP1, RRM) protein 3 2 2
MIRT686776 AZF1 azoospermia factor 1 2 2
MIRT687144 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT691453 C21orf58 chromosome 21 open reading frame 58 2 2
MIRT691469 FAM98B family with sequence similarity 98 member B 2 2
MIRT697031 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT698401 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT702056 RNMT RNA guanine-7 methyltransferase 2 2
MIRT705903 ADAM9 ADAM metallopeptidase domain 9 2 2
MIRT707491 MMADHC methylmalonic aciduria and homocystinuria, cblD type 2 2
MIRT708080 KLHL23 kelch like family member 23 2 2
MIRT709738 TRIM27 tripartite motif containing 27 2 2
MIRT710056 RWDD2A RWD domain containing 2A 2 2
MIRT710226 KCNK1 potassium two pore domain channel subfamily K member 1 2 2
MIRT712043 STYK1 serine/threonine/tyrosine kinase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4666a Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)

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