miRTarBase - #MIRT092959


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pre-miRNA Information
pre-miRNA hsa-mir-548g   
Genomic Coordinates chr4: 147344629 - 147344717
Synonyms MIRN548G, hsa-mir-548g, MIR548G
Description Homo sapiens miR-548g stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548g-5p
Sequence 15| UGCAAAAGUAAUUGCAGUUUUUG |37
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 4 - 147344700 29233923 MiREDiBase
A-to-I 7 4 - 147344697 29233923 MiREDiBase
A-to-I 16 4 - 147344688 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1428532945 1 dbSNP
rs749197968 2 dbSNP
rs1271780804 3 dbSNP
rs375562730 4 dbSNP
rs1340837915 12 dbSNP
rs1222552086 20 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CYP2U1   
Synonyms P450TEC, SPG49, SPG56
Description cytochrome P450 family 2 subfamily U member 1
Transcript NM_183075   
Expression
Putative miRNA Targets on CYP2U1
3'UTR of CYP2U1
(miRNA target sites are highlighted)		 
>CYP2U1|NM_183075|3'UTR
   1 AGAGCATCTCCAAGAAGAGATGGTAAAAAGATATATAAATACATATCCTTCTAAGCAGATTCTTCCTACTGCAAAGGACA
  81 GTGAATCCAGCAACTCAGTGGATCCAAGCTGGGCTCAGAGGTCGGAAGGAGGGTAGAGCACACTGGGAGGTTTCATCTTG
 161 GAGGATTCCTCAGCAGGATACTTCAGCCATTTTAGTAATGCAGGTCTGTGATTTGGGGGATAGAAAACAAAGTACCTATG
 241 AAACGGGATATCTGGATTTTACTTGCAGTGGCTTCCACCGATGGGCCAATCTTCTCATTTCTTAGTGCCTCAGACATCCC
 321 ATATGTAAAATGAGAGTAATAAAACTTGGCTTCTCTCTACCTCTCAGCACTAATGATGGTCAAATGCCTTACATCTTTTC
 401 TGATATCTCTAAAATGCTGTTAAGTTCTGGAGAAGAACTTCAGGAGAAGAAGATCTATCAGCTGGCTTTTAAAGACCTAT
 481 GACAACATGAAAGTGGTGTTCAGCCTGGAATGCTTTGTCAGAGATGGGTGTGGATTTAGGTTATACTGGGGGAGAACTTT
 561 TCTCAGCACAGATTCTATGCCAGCTTCTTTGGGCTTGTTCTGTCACTATCTTTTTGTTTATGATTTTAGTTTTTACTTTT
 641 TGTAGATGTGGGATGAAGTGGACTCTGTCGTGTATATTGAGGAAAAAAGAAATTATAATTTTAAAAAATCCCTTGTAGGA
 721 TTATTATCTAAATTTATATGTCTAACTTCTACTACAACTACAGGAACAGTGAGCCTTGCTACTTCTTTAGTAGCTTCTTG
 801 GCAGAATTCCTTTCTACTGAGTTATTTGCAAAGATGCAGCTCTACCTTTTTACTTAAGGCCTGAATGGTGAGCATGGGGA
 881 TTTTGATACTGGGACTCATCAGGAAAGGATTCTGCTTTCAAACTATACTGAACATTCCTGTCCTAGCGTCCCTGCCACCA
 961 GGCCCAATGCATCTGATCCTTGAATATACTCTCAAAGAATTCACTCTCTTTTTATTAAGAGAACTAAATTGTTTCTAAAT
1041 GTAGATGGTCCCTCTGGAAAAGCAGTTTTCAGCAGGGGTGGTAACCCCTTCAGAGGGAGTTTGGAAATGTGTGGGTATGA
1121 TTCTTGGTTATCATAATGATGGGGGTGCTACTGGCCTTCTGCTGCCATGGGACCAGGATGCTAAATGTCAAGGTAGTCCT
1201 ATACAGTGAAGAATTGTCCTGCTCAAGATGCCAGGATTTCCCCCAGTGAGAACATGCTCTAAGGAATGACCACCCCTTTC
1281 TTTTATTCTCCCACAGTGCTCCATGTACAGAAGTAAGCATAGCAGTCATATGAGCAACCACATTCCTGAACCTTTCCTCA
1361 TGCTGGCTCTACACTTAATCCTTTACTTGTATGTTTCTGTAATTCTTACATAAATTCTATTAAGAGGGTGGCATACTGTA
1441 GTGGATGAAGCTGAGGCTTATAGTAGGTAAGGCACAAAGTTAAAAAGTAACATCACTGGGTTTCAAACCTACTGGTCTCT
1521 GTGACTAAAGAACACTTTCAGAACCACTTCTTGATTCTGCCACCACTTGATCCCATAACAGGCTACCCCTTGGCCTCATG
1601 CTGGAGTTGTGTGTGTCTGTCTTCATCCCAGGCTGAGCTCCTTGAGGTGAGGATGTTGTGCTGTTTGCCTCCCTCACAGT
1681 GCCTTGGTCTTAGTGGATGCCCAGTTGTCTTGTGAATGACTTTTAAGAAGTGTACTTAAGAGAAAAATCCTACCTTATTT
1761 GAATAATTACAAGTCATGTTTTTGTTGCTTAAAGGTGATAAATCAGTGTATATTATTTGTTAATGTCCATTAAAGCCAGT
1841 TTTTAAAAAAATCACTGGACTTTTGTGTTTACCATTTAAAACAACCATTTTAAACAAACTTAGAACGATGCCTTAGCTGT
1921 TTATAGGTAACAGAATGTAAACTCCCACCACCTGGAGACTAGGCCATATCCAGGGACCTCACACTGACTTTCCTAAAGGA
2001 GAGAAGCAGCTACGCTGTTCATACTGATAGAGAAGAGGGCAAGAAAAGATCCAGAGTGGCTGTTACTTTGAAAATTAAAC
2081 GAAAGATGAAATTCTGAACTTAAAACACTTCTGTTTGGCCTTCTATAACTGATCACCCTTCTTTGCTCTGTTTTCCAGAT
2161 AAATGGAGACACCAGATCTCCCTAACCTCTGACTTCTGCCGTTAGCCATACTCTGTGTAGTTAGATCTCAGTCTGGGAAT
2241 GGCATTCCAGGGCAATTGTGAACATGAGGCTAGATTTTTCCTTTGATTTAGCACATTCCTAGGCAGACTTTTGCAAGCTC
2321 AAAAAATGAAAATAATATCTGCTTAACCAAAACATAATCATAGGAAGAAGAAAAATTTTAAAATGATTGATTTTTGACTC
2401 TACATTCTTTATCTACCATACTGCTCTTTTCCTTTTTAGAAATATTACTAAGCACTTTCCGTATAGATAAATGAAATACA
2481 GGCTAATCTTTAGGTGTCTTAGGAATTTTTGCTTTTTGAAAAAGAAAAGCTAATAGCCTAACTGCAGAGGAACTGAGTGG
2561 ATGGGGTAGCTGCTGTATAGATTTTTAGATGAGATGATACAGTGTGGATTACACTGTACCTTGGGCGGGAGAGTTTGTTC
2641 TTGATATGGAATTCATATGCTTTTGAATTGCACTAATAACTCAGCATTAACAAGTATATTACTCCTTAAATTATACATGC
2721 ATTTTCAATATTCCTAACCAAATAGTTTATAGCTTATTGAGAAGAAGTCTGTTCTTGGAGAGATGTTGAAATTAGATGTT
2801 TATTAAACTTTAAAATATAATGCCTTAAGCTGTGGCACTTTAAAAACATCTTTATATATAAATTGCTAAAAGGACTGTTA
2881 ATGCTTTTCTCAGACACATTGGCATTTTACAATTTTGCACATGGTTTATTTGAAATCAAAAAATAACTATACTTTGTTTT
2961 ATAAGTCTACCTAATATCTCATTTTTGATTCTCATCGTTAGCACAGTTTTGTTGCTTTTATTAAACTATTTTAAAAAAAA
3041 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guuuuugaCGUUAAUGAAAACGu 5'
                  |||:  |||||||| 
Target 5' attcctagGCAG--ACTTTTGCa 3'
 2295 - 2315 151.00 -12.70
2 
miRNA  3' guUUUUGACGUUA-AUGAAAACGu 5'
            |||| | || |  |||||||: 
Target 5' aaAAAAAT-CACTGGACTTTTGTg 3'
 1845 - 1867 144.00 -8.10
3 
miRNA  3' guUUUUGACGUUAAUGAAAACgu 5'
            ::||:| ||  |:||||||  
Target 5' atGGAATT-CATATGCTTTTGaa 3'
 2646 - 2667 140.00 -7.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30493915 15 COSMIC
COSN30154663 28 COSMIC
COSN28781139 32 COSMIC
COSN30161925 34 COSMIC
COSN30161919 49 COSMIC
COSN31580782 63 COSMIC
COSN14935587 1024 COSMIC
COSN15334484 1331 COSMIC
COSN9583885 1537 COSMIC
COSN30140806 1597 COSMIC
COSN26310659 2081 COSMIC
COSN24372837 2225 COSMIC
COSN19470735 2375 COSMIC
COSN9898586 2767 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1194152680 1 dbSNP
rs760935150 2 dbSNP
rs1420087183 3 dbSNP
rs377467252 5 dbSNP
rs529806409 11 dbSNP
rs201919750 12 dbSNP
rs1033325675 13 dbSNP
rs1383342197 15 dbSNP
rs762225242 16 dbSNP
rs538538497 20 dbSNP
rs765717394 21 dbSNP
rs370914955 22 dbSNP
rs1244815997 23 dbSNP
rs1166823782 25 dbSNP
rs1396666322 30 dbSNP
rs780269996 30 dbSNP
rs79009744 32 dbSNP
rs1323862619 33 dbSNP
rs1393438028 34 dbSNP
rs183327899 35 dbSNP
rs371017677 36 dbSNP
rs752207434 43 dbSNP
rs551591505 47 dbSNP
rs1225267555 52 dbSNP
rs1251909404 62 dbSNP
rs571567845 69 dbSNP
rs377630638 70 dbSNP
rs760235478 71 dbSNP
rs1320372367 72 dbSNP
rs1247426275 74 dbSNP
rs956311267 75 dbSNP
rs981151496 79 dbSNP
rs1328383828 86 dbSNP
rs750021329 96 dbSNP
rs1329785603 100 dbSNP
rs1226565056 106 dbSNP
rs537070614 109 dbSNP
rs1395355242 117 dbSNP
rs866680080 124 dbSNP
rs557596915 125 dbSNP
rs80203932 133 dbSNP
rs553600162 134 dbSNP
rs979798894 135 dbSNP
rs757661797 137 dbSNP
rs1179418952 144 dbSNP
rs536290976 145 dbSNP
rs188684590 146 dbSNP
rs1038198482 151 dbSNP
rs1489617415 155 dbSNP
rs1489877261 164 dbSNP
rs1291220155 172 dbSNP
rs1223844684 173 dbSNP
rs1362285531 177 dbSNP
rs796932488 196 dbSNP
rs538686178 199 dbSNP
rs940835386 201 dbSNP
rs1192110380 203 dbSNP
rs1307468090 205 dbSNP
rs1238821477 211 dbSNP
rs376347268 214 dbSNP
rs897003623 215 dbSNP
rs1307244260 220 dbSNP
rs558373111 222 dbSNP
rs575150754 225 dbSNP
rs543882557 244 dbSNP
rs140226585 245 dbSNP
rs150313889 246 dbSNP
rs1457330812 249 dbSNP
rs1322355531 251 dbSNP
rs1347721760 269 dbSNP
rs1438248913 271 dbSNP
rs138045275 280 dbSNP
rs889083589 281 dbSNP
rs1008970497 284 dbSNP
rs1184247369 290 dbSNP
rs559908977 307 dbSNP
rs191788363 313 dbSNP
rs1033165811 315 dbSNP
rs1490972618 316 dbSNP
rs1282777972 321 dbSNP
rs1407851653 324 dbSNP
rs956436012 327 dbSNP
rs551821768 335 dbSNP
rs998632626 337 dbSNP
rs1032816867 340 dbSNP
rs1347256743 342 dbSNP
rs1316113655 351 dbSNP
rs544329697 354 dbSNP
rs1400118471 356 dbSNP
rs1385366553 360 dbSNP
rs1160139202 361 dbSNP
rs1287866037 364 dbSNP
rs1468389365 370 dbSNP
rs957534091 374 dbSNP
rs565249116 379 dbSNP
rs1428898139 393 dbSNP
rs1023060522 406 dbSNP
rs971042062 420 dbSNP
rs1222603882 422 dbSNP
rs529548173 426 dbSNP
rs1251457694 430 dbSNP
rs981225135 445 dbSNP
rs778207891 446 dbSNP
rs1448127849 447 dbSNP
rs979746620 462 dbSNP
rs1202200741 474 dbSNP
rs1320886007 477 dbSNP
rs1262132719 478 dbSNP
rs961088452 491 dbSNP
rs926996049 509 dbSNP
rs1223805981 526 dbSNP
rs972661476 531 dbSNP
rs1184904945 532 dbSNP
rs183552359 532 dbSNP
rs1267943228 533 dbSNP
rs920736867 534 dbSNP
rs377469692 541 dbSNP
rs550685655 547 dbSNP
rs1319997322 549 dbSNP
rs1450188759 558 dbSNP
rs1405551993 563 dbSNP
rs1337622205 570 dbSNP
rs974258301 572 dbSNP
rs749598965 583 dbSNP
rs1167432138 588 dbSNP
rs1162119784 598 dbSNP
rs1411066171 601 dbSNP
rs1476004114 603 dbSNP
rs868448687 615 dbSNP
rs1182064830 624 dbSNP
rs929815771 637 dbSNP
rs1050986551 643 dbSNP
rs944692001 653 dbSNP
rs1369677440 663 dbSNP
rs750964456 666 dbSNP
rs1443838289 667 dbSNP
rs567704271 670 dbSNP
rs543528501 671 dbSNP
rs371923057 673 dbSNP
rs903289136 673 dbSNP
rs1243762244 678 dbSNP
rs1447290908 687 dbSNP
rs998925660 687 dbSNP
rs1054698147 689 dbSNP
rs1054963961 690 dbSNP
rs892935529 697 dbSNP
rs1381433335 703 dbSNP
rs891941725 704 dbSNP
rs1010824999 711 dbSNP
rs1013281306 717 dbSNP
rs1024527200 719 dbSNP
rs115097552 727 dbSNP
rs1185840471 732 dbSNP
rs1001781686 737 dbSNP
rs779071747 750 dbSNP
rs186750689 758 dbSNP
rs1437894003 763 dbSNP
rs1275877115 765 dbSNP
rs1442335387 769 dbSNP
rs1002525400 770 dbSNP
rs567029986 774 dbSNP
rs191556956 782 dbSNP
rs184078858 785 dbSNP
rs962366911 793 dbSNP
rs745993101 795 dbSNP
rs187868375 810 dbSNP
rs1279172240 812 dbSNP
rs973824643 835 dbSNP
rs1352377179 839 dbSNP
rs973817905 845 dbSNP
rs1424533307 853 dbSNP
rs918333481 860 dbSNP
rs1165792811 869 dbSNP
rs1399335676 871 dbSNP
rs1407789431 872 dbSNP
rs1176263514 874 dbSNP
rs537978512 875 dbSNP
rs920797550 879 dbSNP
rs1183774460 880 dbSNP
rs1389145568 894 dbSNP
rs1253282391 901 dbSNP
rs370878874 907 dbSNP
rs952244160 909 dbSNP
rs986811967 921 dbSNP
rs142508007 925 dbSNP
rs910792320 926 dbSNP
rs1196688602 935 dbSNP
rs1427468008 938 dbSNP
rs951210228 941 dbSNP
rs73838284 944 dbSNP
rs1040370826 948 dbSNP
rs192943582 949 dbSNP
rs185010907 962 dbSNP
rs1331517405 968 dbSNP
rs1281413746 974 dbSNP
rs1404421178 976 dbSNP
rs1448819812 978 dbSNP
rs1054537177 980 dbSNP
rs921902640 981 dbSNP
rs1295789903 983 dbSNP
rs1429324474 990 dbSNP
rs1297009592 1008 dbSNP
rs4565156 1010 dbSNP
rs545659584 1012 dbSNP
rs1173558587 1016 dbSNP
rs1479814471 1020 dbSNP
rs1230958262 1022 dbSNP
rs948561233 1037 dbSNP
rs1054507667 1049 dbSNP
rs1484879745 1053 dbSNP
rs760664325 1055 dbSNP
rs1199207504 1056 dbSNP
rs907138828 1057 dbSNP
rs1002752895 1063 dbSNP
rs1015278778 1068 dbSNP
rs896812741 1070 dbSNP
rs1045873577 1071 dbSNP
rs907405660 1076 dbSNP
rs1001712858 1077 dbSNP
rs1324369641 1079 dbSNP
rs1303553082 1090 dbSNP
rs562739132 1096 dbSNP
rs1034582864 1098 dbSNP
rs1289747537 1108 dbSNP
rs1437741768 1133 dbSNP
rs995703983 1135 dbSNP
rs1026716809 1138 dbSNP
rs1246952967 1143 dbSNP
rs1447270208 1148 dbSNP
rs551151040 1149 dbSNP
rs1469002832 1155 dbSNP
rs1377673364 1159 dbSNP
rs995587818 1160 dbSNP
rs1177635238 1166 dbSNP
rs1426625556 1168 dbSNP
rs1190128947 1181 dbSNP
rs952342320 1185 dbSNP
rs951200839 1198 dbSNP
rs1466078019 1202 dbSNP
rs986588948 1208 dbSNP
rs530900852 1215 dbSNP
rs986330425 1220 dbSNP
rs562528248 1221 dbSNP
rs1461974819 1225 dbSNP
rs1257792443 1231 dbSNP
rs966267601 1241 dbSNP
rs1307367044 1242 dbSNP
rs561220127 1243 dbSNP
rs976271080 1248 dbSNP
rs1231335661 1259 dbSNP
rs367855923 1260 dbSNP
rs1380994205 1261 dbSNP
rs1314848120 1270 dbSNP
rs111975834 1275 dbSNP
rs1402513474 1277 dbSNP
rs1470298907 1281 dbSNP
rs934673632 1291 dbSNP
rs578150397 1293 dbSNP
rs1304013465 1294 dbSNP
rs990661012 1301 dbSNP
rs914648196 1304 dbSNP
rs1386558558 1306 dbSNP
rs1314793476 1310 dbSNP
rs1437467298 1315 dbSNP
rs948784401 1338 dbSNP
rs1383134765 1341 dbSNP
rs190255112 1343 dbSNP
rs1424545496 1349 dbSNP
rs1258544181 1358 dbSNP
rs1044254478 1369 dbSNP
rs1194348566 1373 dbSNP
rs1330840273 1382 dbSNP
rs1231504422 1387 dbSNP
rs1252006803 1399 dbSNP
rs567192119 1432 dbSNP
rs975307062 1439 dbSNP
rs756575095 1444 dbSNP
rs925194925 1453 dbSNP
rs935984369 1456 dbSNP
rs115289507 1473 dbSNP
rs1314418587 1474 dbSNP
rs778490219 1476 dbSNP
rs1389389633 1478 dbSNP
rs913271052 1497 dbSNP
rs1308165502 1511 dbSNP
rs946105657 1514 dbSNP
rs1463183731 1515 dbSNP
rs1036950753 1535 dbSNP
rs1210150228 1536 dbSNP
rs1162628066 1537 dbSNP
rs896837946 1540 dbSNP
rs1045806803 1545 dbSNP
rs1370038573 1546 dbSNP
rs907356903 1548 dbSNP
rs1450723561 1557 dbSNP
rs995170045 1558 dbSNP
rs1252566239 1563 dbSNP
rs560497338 1564 dbSNP
rs181866656 1566 dbSNP
rs1489984328 1573 dbSNP
rs1268817129 1576 dbSNP
rs1223962172 1577 dbSNP
rs117833622 1582 dbSNP
rs537538699 1584 dbSNP
rs1158338895 1587 dbSNP
rs1288388315 1589 dbSNP
rs1027038315 1591 dbSNP
rs1055937775 1592 dbSNP
rs889563121 1595 dbSNP
rs554243520 1605 dbSNP
rs567686804 1612 dbSNP
rs533567521 1625 dbSNP
rs1390254993 1626 dbSNP
rs995811154 1626 dbSNP
rs1156616230 1627 dbSNP
rs1385378422 1633 dbSNP
rs200833643 1638 dbSNP
rs1412982159 1640 dbSNP
rs1161390979 1643 dbSNP
rs577049607 1655 dbSNP
rs1025711178 1658 dbSNP
rs1200164368 1670 dbSNP
rs1346556514 1678 dbSNP
rs1409683163 1682 dbSNP
rs966173734 1687 dbSNP
rs8727 1707 dbSNP
rs1260030824 1713 dbSNP
rs7791 1730 dbSNP
rs1464115281 1731 dbSNP
rs576190044 1735 dbSNP
rs74890743 1750 dbSNP
rs963833898 1768 dbSNP
rs561383081 1775 dbSNP
rs764981298 1778 dbSNP
rs914533008 1788 dbSNP
rs1332790657 1789 dbSNP
rs958193539 1796 dbSNP
rs750078638 1798 dbSNP
rs1381455429 1803 dbSNP
rs948841567 1808 dbSNP
rs184849395 1812 dbSNP
rs766022203 1813 dbSNP
rs560967869 1818 dbSNP
rs1490461816 1820 dbSNP
rs1173261660 1823 dbSNP
rs1479268948 1827 dbSNP
rs1371856079 1829 dbSNP
rs756660378 1831 dbSNP
rs1036980206 1833 dbSNP
rs918524239 1834 dbSNP
rs781699867 1840 dbSNP
rs1250330788 1845 dbSNP
rs946086638 1845 dbSNP
rs540608813 1846 dbSNP
rs1473557465 1852 dbSNP
rs1459719665 1853 dbSNP
rs1048061116 1864 dbSNP
rs1200536093 1866 dbSNP
rs1346967449 1867 dbSNP
rs1368029644 1870 dbSNP
rs1456531515 1873 dbSNP
rs1268333748 1876 dbSNP
rs889415214 1879 dbSNP
rs1365622606 1885 dbSNP
rs112130393 1907 dbSNP
rs560568249 1908 dbSNP
rs1429485679 1919 dbSNP
rs1405671434 1920 dbSNP
rs1334843983 1924 dbSNP
rs1416227245 1927 dbSNP
rs532683276 1928 dbSNP
rs1040768873 1937 dbSNP
rs1167809746 1940 dbSNP
rs1352860097 1947 dbSNP
rs1055885696 1955 dbSNP
rs1392538821 1958 dbSNP
rs138780282 1967 dbSNP
rs771910152 1968 dbSNP
rs931541836 1970 dbSNP
rs1187890171 1971 dbSNP
rs1047321756 1974 dbSNP
rs1270324066 1976 dbSNP
rs569302204 1977 dbSNP
rs1342816554 1992 dbSNP
rs531951858 2009 dbSNP
rs886752696 2010 dbSNP
rs547856599 2014 dbSNP
rs1378647618 2015 dbSNP
rs1293523569 2018 dbSNP
rs1284996763 2022 dbSNP
rs1359775893 2029 dbSNP
rs1334030996 2031 dbSNP
rs1328292123 2033 dbSNP
rs1372951545 2036 dbSNP
rs1161993497 2044 dbSNP
rs1019343253 2051 dbSNP
rs956333474 2058 dbSNP
rs531677982 2060 dbSNP
rs138238394 2063 dbSNP
rs1409866553 2064 dbSNP
rs1021663303 2071 dbSNP
rs1180872772 2075 dbSNP
rs970045830 2081 dbSNP
rs980208850 2082 dbSNP
rs1220248407 2083 dbSNP
rs778135857 2087 dbSNP
rs928690738 2089 dbSNP
rs1290386091 2103 dbSNP
rs567796846 2120 dbSNP
rs957926792 2121 dbSNP
rs1177728563 2126 dbSNP
rs1230188036 2127 dbSNP
rs988439416 2129 dbSNP
rs1491284573 2130 dbSNP
rs1020871945 2139 dbSNP
rs368697488 2147 dbSNP
rs1301832476 2151 dbSNP
rs1255483052 2156 dbSNP
rs1436448587 2158 dbSNP
rs1350810361 2163 dbSNP
rs967316629 2172 dbSNP
rs1406703433 2179 dbSNP
rs533676140 2185 dbSNP
rs972580071 2192 dbSNP
rs1189762924 2199 dbSNP
rs981400006 2201 dbSNP
rs1197159665 2202 dbSNP
rs1488127385 2202 dbSNP
rs757536170 2202 dbSNP
rs931253347 2207 dbSNP
rs1048781138 2211 dbSNP
rs910927906 2215 dbSNP
rs141848079 2216 dbSNP
rs958761944 2218 dbSNP
rs1445437996 2221 dbSNP
rs991561173 2229 dbSNP
rs942351663 2236 dbSNP
rs1331289956 2237 dbSNP
rs1281509509 2243 dbSNP
rs1219106834 2244 dbSNP
rs920057846 2251 dbSNP
rs188099571 2259 dbSNP
rs1462884063 2265 dbSNP
rs1429082623 2267 dbSNP
rs931519873 2268 dbSNP
rs1345270010 2271 dbSNP
rs777379286 2278 dbSNP
rs746971743 2291 dbSNP
rs1319430292 2293 dbSNP
rs1457485721 2294 dbSNP
rs1400812432 2305 dbSNP
rs539307937 2307 dbSNP
rs1173379447 2333 dbSNP
rs1316588384 2341 dbSNP
rs1383066375 2350 dbSNP
rs1227294618 2357 dbSNP
rs1474300578 2357 dbSNP
rs1295061087 2360 dbSNP
rs556431231 2362 dbSNP
rs746120276 2381 dbSNP
rs1255316064 2387 dbSNP
rs550282926 2388 dbSNP
rs180953676 2393 dbSNP
rs1011873295 2401 dbSNP
rs1313244074 2403 dbSNP
rs780120179 2413 dbSNP
rs970075305 2415 dbSNP
rs542066738 2417 dbSNP
rs571329993 2418 dbSNP
rs1435309609 2419 dbSNP
rs1035669165 2420 dbSNP
rs1300507082 2424 dbSNP
rs747048630 2425 dbSNP
rs768708023 2427 dbSNP
rs574458014 2441 dbSNP
rs1053554549 2443 dbSNP
rs1235939335 2446 dbSNP
rs893590208 2451 dbSNP
rs1009409337 2454 dbSNP
rs1021241026 2456 dbSNP
rs3756271 2461 dbSNP
rs540769307 2462 dbSNP
rs1468090110 2465 dbSNP
rs1051130237 2472 dbSNP
rs1406195226 2473 dbSNP
rs1035639423 2481 dbSNP
rs560280855 2483 dbSNP
rs532538224 2485 dbSNP
rs1433818234 2487 dbSNP
rs1381115829 2492 dbSNP
rs1445857254 2502 dbSNP
rs1310127579 2525 dbSNP
rs1395132266 2526 dbSNP
rs1379237561 2529 dbSNP
rs1304102614 2532 dbSNP
rs1407880829 2533 dbSNP
rs1369881253 2540 dbSNP
rs1168933556 2541 dbSNP
rs1431388375 2546 dbSNP
rs1366573145 2554 dbSNP
rs761717320 2559 dbSNP
rs1318171123 2564 dbSNP
rs1258297357 2566 dbSNP
rs976403762 2569 dbSNP
rs1482980168 2579 dbSNP
rs1253147620 2596 dbSNP
rs1208002456 2599 dbSNP
rs771693983 2599 dbSNP
rs1265276487 2619 dbSNP
rs1243551570 2623 dbSNP
rs1321982615 2626 dbSNP
rs920026463 2627 dbSNP
rs546136496 2628 dbSNP
rs952958987 2639 dbSNP
rs769738524 2640 dbSNP
rs563220829 2641 dbSNP
rs1308561922 2646 dbSNP
rs982965976 2653 dbSNP
rs746626463 2661 dbSNP
rs547702998 2665 dbSNP
rs922230773 2669 dbSNP
rs1458541612 2672 dbSNP
rs1370428822 2683 dbSNP
rs1157289336 2686 dbSNP
rs531912264 2687 dbSNP
rs1412846337 2708 dbSNP
rs1052612359 2716 dbSNP
rs1225281899 2721 dbSNP
rs1263761388 2722 dbSNP
rs1464525307 2729 dbSNP
rs144693175 2732 dbSNP
rs1210816482 2753 dbSNP
rs1244036703 2756 dbSNP
rs1266834314 2760 dbSNP
rs776328234 2761 dbSNP
rs932307984 2762 dbSNP
rs1053912321 2764 dbSNP
rs186182905 2767 dbSNP
rs1288488298 2777 dbSNP
rs527383136 2783 dbSNP
rs947531362 2797 dbSNP
rs1329274155 2802 dbSNP
rs889776703 2812 dbSNP
rs547473218 2815 dbSNP
rs773105481 2822 dbSNP
rs1001748293 2831 dbSNP
rs1392697363 2833 dbSNP
rs1318747854 2847 dbSNP
rs1009770561 2849 dbSNP
rs565941816 2855 dbSNP
rs1429333413 2857 dbSNP
rs1477288364 2858 dbSNP
rs1377572486 2871 dbSNP
rs1200272738 2885 dbSNP
rs895811708 2887 dbSNP
rs375235975 2900 dbSNP
rs1206418885 2901 dbSNP
rs994301661 2920 dbSNP
rs1464183551 2921 dbSNP
rs1456272592 2922 dbSNP
rs1026130501 2924 dbSNP
rs952604900 2933 dbSNP
rs1342331057 2938 dbSNP
rs984372112 2940 dbSNP
rs1233928791 2944 dbSNP
rs570312409 2954 dbSNP
rs1295155789 2957 dbSNP
rs1434595738 2966 dbSNP
rs191055899 2975 dbSNP
rs958660609 2977 dbSNP
rs963931075 2988 dbSNP
rs1365229805 2989 dbSNP
rs181371285 2995 dbSNP
rs1173642489 2997 dbSNP
rs976603315 2998 dbSNP
rs550610516 3002 dbSNP
rs762702655 3002 dbSNP
rs1283873031 3006 dbSNP
rs186733221 3007 dbSNP
rs535781796 3012 dbSNP
rs914988570 3021 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guuuuugacguuaaugAAAACGu 5'
                          |||||| 
Target 5' ------cauuuuacaaUUUUGCa 3'
 		1 - 17
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 113612.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guuuuUGA-CGUUAA---UGAAAACGu 5'
               |:| ||| ||   | |||||| 
Target 5' -----AUUGGCAUUUUACAAUUUUGCa 3'
 		1 - 22
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000332884.6 | 3UTR | CAUUUUACAAUUUUGCACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000332884.6 | 3UTR | AUUGGCAUUUUACAAUUUUGCACAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
249 hsa-miR-548g-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057504 CEP55 centrosomal protein 55 2 4
MIRT060829 CEP350 centrosomal protein 350 2 4
MIRT062719 MLEC malectin 2 4
MIRT064766 CCND2 cyclin D2 2 8
MIRT075336 SF3B3 splicing factor 3b subunit 3 2 2
MIRT080205 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT080236 SMAD4 SMAD family member 4 2 6
MIRT087395 AGFG1 ArfGAP with FG repeats 1 2 4
MIRT088228 GRAMD4 GRAM domain containing 4 2 2
MIRT089490 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT091222 USP13 ubiquitin specific peptidase 13 2 2
MIRT092959 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT094091 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 4
MIRT097469 PAPD4 poly(A) RNA polymerase D4, non-canonical 2 2
MIRT102252 HBP1 HMG-box transcription factor 1 2 4
MIRT105440 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT107286 FAM73B mitoguardin 2 2 2
MIRT113584 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT113886 KPNA6 karyopherin subunit alpha 6 2 6
MIRT126457 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT135023 ADSS adenylosuccinate synthase 2 6
MIRT139889 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT149702 LDLR low density lipoprotein receptor 2 2
MIRT163230 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT165198 GRAMD3 GRAM domain containing 2B 2 2
MIRT172169 FZD6 frizzled class receptor 6 2 8
MIRT177396 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT179427 TBRG1 transforming growth factor beta regulator 1 2 6
MIRT195617 FAM195A MAPK regulated corepressor interacting protein 2 2 6
MIRT208727 MED12L mediator complex subunit 12 like 2 6
MIRT211508 ELMOD2 ELMO domain containing 2 2 2
MIRT213434 MOB1B MOB kinase activator 1B 2 6
MIRT240121 NDRG1 N-myc downstream regulated 1 2 2
MIRT243102 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT247387 HCFC2 host cell factor C2 2 4
MIRT248057 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT249457 ZNF691 zinc finger protein 691 2 4
MIRT253421 EVI5L ecotropic viral integration site 5 like 2 2
MIRT254148 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT258906 LAPTM4B lysosomal protein transmembrane 4 beta 2 4
MIRT259391 SLC6A8 solute carrier family 6 member 8 2 4
MIRT266966 LRRC55 leucine rich repeat containing 55 2 4
MIRT279001 GMFB glia maturation factor beta 2 10
MIRT288802 KCNJ2 potassium voltage-gated channel subfamily J member 2 2 2
MIRT325678 ZNF367 zinc finger protein 367 2 2
MIRT330543 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 4
MIRT334269 RCC2 regulator of chromosome condensation 2 2 2
MIRT350225 PRNP prion protein 2 2
MIRT400510 SKIL SKI like proto-oncogene 2 10
MIRT405635 WBP4 WW domain binding protein 4 2 4
MIRT408651 QKI QKI, KH domain containing RNA binding 2 2
MIRT444161 ZNF701 zinc finger protein 701 2 2
MIRT444509 ZNF525 zinc finger protein 525 2 2
MIRT445209 CRYBG3 crystallin beta-gamma domain containing 3 2 2
MIRT446844 FOXP1 forkhead box P1 2 2
MIRT449026 ADRB1 adrenoceptor beta 1 2 2
MIRT450746 POLI DNA polymerase iota 2 4
MIRT450793 OTUD7A OTU deubiquitinase 7A 2 2
MIRT454916 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455266 DDX39B DExD-box helicase 39B 2 10
MIRT455715 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT456098 MB21D1 Mab-21 domain containing 1 2 6
MIRT463635 YY1 YY1 transcription factor 2 8
MIRT463891 WNT7B Wnt family member 7B 2 2
MIRT466262 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT466820 STX6 syntaxin 6 2 6
MIRT466879 STX16 syntaxin 16 2 2
MIRT467524 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT468199 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468633 SELT selenoprotein T 2 2
MIRT470367 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT470998 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471559 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT472277 NFIB nuclear factor I B 2 4
MIRT472758 MTMR6 myotubularin related protein 6 2 8
MIRT474719 KIF13A kinesin family member 13A 2 6
MIRT475869 H3F3C H3 histone family member 3C 2 10
MIRT475903 H3F3B H3 histone family member 3B 2 8
MIRT477350 EOGT EGF domain specific O-linked N-acetylglucosamine transferase 2 4
MIRT477486 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT478096 DLG5 discs large MAGUK scaffold protein 5 2 6
MIRT479805 CCNA2 cyclin A2 2 6
MIRT480813 BLCAP bladder cancer associated protein 2 10
MIRT481947 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483060 EXT2 exostosin glycosyltransferase 2 2 6
MIRT484143 LRRC45 leucine rich repeat containing 45 2 4
MIRT484904 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485080 SOX4 SRY-box 4 2 10
MIRT485639 DICER1 dicer 1, ribonuclease III 2 4
MIRT485798 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT486271 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT486740 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT487167 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 2 2
MIRT491642 PDRG1 p53 and DNA damage regulated 1 2 10
MIRT491934 WDR45B WD repeat domain 45B 2 8
MIRT492232 SLC48A1 solute carrier family 48 member 1 2 2
MIRT493089 MMGT1 membrane magnesium transporter 1 2 12
MIRT494479 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT494986 ROCK1 Rho associated coiled-coil containing protein kinase 1 2 2
MIRT495671 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT498467 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT499268 NBPF11 NBPF member 11 2 2
MIRT499855 SVOP SV2 related protein 2 12
MIRT500307 ZNF622 zinc finger protein 622 2 8
MIRT500640 TUBB2A tubulin beta 2A class IIa 2 8
MIRT501222 SEMA4C semaphorin 4C 2 6
MIRT501526 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 8
MIRT501569 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502430 G3BP2 G3BP stress granule assembly factor 2 2 10
MIRT502967 CCNL1 cyclin L1 2 8
MIRT503470 ZNF154 zinc finger protein 154 2 6
MIRT504572 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 4
MIRT504956 ZNRF2 zinc and ring finger 2 2 6
MIRT505206 UBN2 ubinuclein 2 2 8
MIRT505238 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT507570 DEK DEK proto-oncogene 2 2
MIRT509412 MCM7 minichromosome maintenance complex component 7 2 6
MIRT510715 SPG20 spartin 2 6
MIRT510859 RAN RAN, member RAS oncogene family 2 8
MIRT510914 PSMA2 proteasome subunit alpha 2 2 4
MIRT510944 PPTC7 PTC7 protein phosphatase homolog 2 8
MIRT511072 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511213 LNPEP leucyl and cystinyl aminopeptidase 2 4
MIRT511959 ELOVL5 ELOVL fatty acid elongase 5 2 6
MIRT512123 CREBL2 cAMP responsive element binding protein like 2 2 8
MIRT513686 RNF111 ring finger protein 111 2 2
MIRT513896 GRB10 growth factor receptor bound protein 10 2 6
MIRT516305 F8A2 coagulation factor VIII associated 2 2 2
MIRT516331 F8A3 coagulation factor VIII associated 3 2 2
MIRT517521 ITM2C integral membrane protein 2C 2 6
MIRT517930 IMPA1 inositol monophosphatase 1 2 2
MIRT521368 RNF11 ring finger protein 11 2 6
MIRT525192 ZNF93 zinc finger protein 93 2 2
MIRT527216 CCNL2 cyclin L2 2 2
MIRT527835 NUPL1 nucleoporin 58 2 2
MIRT529433 MALT1 MALT1 paracaspase 2 2
MIRT530166 C11orf44 chromosome 11 open reading frame 44 2 4
MIRT530515 C4orf32 family with sequence similarity 241 member A 2 4
MIRT532372 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT533855 TEAD1 TEA domain transcription factor 1 2 2
MIRT534750 RAVER2 ribonucleoprotein, PTB binding 2 2 4
MIRT534795 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT538602 CDK19 cyclin dependent kinase 19 2 2
MIRT539247 ANKRD50 ankyrin repeat domain 50 2 2
MIRT539467 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT543100 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543897 ESYT1 extended synaptotagmin 1 2 2
MIRT544980 MFF mitochondrial fission factor 2 4
MIRT545794 ZNF772 zinc finger protein 772 2 4
MIRT546009 WDR26 WD repeat domain 26 2 4
MIRT546378 STOX2 storkhead box 2 2 4
MIRT546681 RORA RAR related orphan receptor A 2 4
MIRT546947 SFTPA1 surfactant protein A1 2 2
MIRT547034 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT547397 MKX mohawk homeobox 2 2
MIRT547470 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547501 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT548077 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548500 E2F8 E2F transcription factor 8 2 2
MIRT548883 CHEK2 checkpoint kinase 2 2 4
MIRT549063 CALM1 calmodulin 1 2 2
MIRT549166 BMP3 bone morphogenetic protein 3 2 2
MIRT549310 ARHGAP12 Rho GTPase activating protein 12 2 4
MIRT549345 ARC activity regulated cytoskeleton associated protein 2 2
MIRT549475 ACBD5 acyl-CoA binding domain containing 5 2 2
MIRT549678 ZNF598 zinc finger protein 598 2 2
MIRT550209 MAVS mitochondrial antiviral signaling protein 2 4
MIRT550356 INCENP inner centromere protein 2 4
MIRT550531 MYZAP myocardial zonula adherens protein 2 2
MIRT551156 ZNF678 zinc finger protein 678 2 2
MIRT552311 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT552880 WASL Wiskott-Aldrich syndrome like 2 4
MIRT553383 TRIM33 tripartite motif containing 33 2 2
MIRT554453 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554868 RCAN2 regulator of calcineurin 2 2 2
MIRT556022 MYBL1 MYB proto-oncogene like 1 2 2
MIRT556175 MCC mutated in colorectal cancers 2 2
MIRT556238 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT556878 ITGA2 integrin subunit alpha 2 2 2
MIRT557575 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT557690 GATA6 GATA binding protein 6 2 2
MIRT557906 FBXO8 F-box protein 8 2 2
MIRT558132 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT558481 DBN1 drebrin 1 2 2
MIRT558744 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT558760 CFL2 cofilin 2 2 2
MIRT559122 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT559406 GDNF glial cell derived neurotrophic factor 2 4
MIRT559476 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT559677 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT560049 ZNF680 zinc finger protein 680 2 2
MIRT560643 ZNF107 zinc finger protein 107 2 2
MIRT562581 CBX3 chromobox 3 2 2
MIRT564188 CLVS2 clavesin 2 2 2
MIRT564530 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT564540 CCDC80 coiled-coil domain containing 80 2 2
MIRT565290 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT565315 TMEM41A transmembrane protein 41A 2 2
MIRT565950 RRAGD Ras related GTP binding D 2 2
MIRT566633 NFYA nuclear transcription factor Y subunit alpha 2 4
MIRT566818 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT567529 FGFR1OP FGFR1 oncogene partner 2 2
MIRT568631 ACVR2A activin A receptor type 2A 2 2
MIRT572141 DESI1 desumoylating isopeptidase 1 2 2
MIRT616029 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT620048 ODF4 outer dense fiber of sperm tails 4 2 2
MIRT620531 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621878 TAOK3 TAO kinase 3 2 2
MIRT623242 MLLT6 MLLT6, PHD finger containing 2 2
MIRT623994 FAM104A family with sequence similarity 104 member A 2 2
MIRT624301 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT626283 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT627771 RAB30 RAB30, member RAS oncogene family 2 2
MIRT641139 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT644587 SPOP speckle type BTB/POZ protein 2 2
MIRT644820 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT645971 NHLRC2 NHL repeat containing 2 2 2
MIRT646171 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646496 ZNF429 zinc finger protein 429 2 2
MIRT647834 RAB23 RAB23, member RAS oncogene family 2 2
MIRT648463 CCDC127 coiled-coil domain containing 127 2 2
MIRT657281 HRK harakiri, BCL2 interacting protein 2 2
MIRT658644 ENAH ENAH, actin regulator 2 2
MIRT658677 EMP2 epithelial membrane protein 2 2 2
MIRT665229 ZZZ3 zinc finger ZZ-type containing 3 2 2
MIRT669277 C19orf44 chromosome 19 open reading frame 44 2 2
MIRT676048 AUTS8 Autism, susceptibility to, 8 2 2
MIRT681484 DIP2A disco interacting protein 2 homolog A 2 2
MIRT681555 UBXN2A UBX domain protein 2A 2 2
MIRT683143 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT688535 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT689429 CYB561 cytochrome b561 2 2
MIRT689535 KIAA0513 KIAA0513 2 2
MIRT689895 SOD2 superoxide dismutase 2 2 2
MIRT695990 SNX19 sorting nexin 19 2 2
MIRT697781 UBXN7 UBX domain protein 7 2 2
MIRT702915 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT703145 GPR137C G protein-coupled receptor 137C 2 2
MIRT703525 FKBP15 FK506 binding protein 15 2 2
MIRT704537 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704998 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 2
MIRT705722 AMMECR1L AMMECR1 like 2 2
MIRT707121 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT707452 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707776 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT707889 SLC30A7 solute carrier family 30 member 7 2 2
MIRT720532 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT723860 CD209 CD209 molecule 2 2
MIRT725350 MUC21 mucin 21, cell surface associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548g Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-548g Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)

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