miRTarBase - #MIRT093590


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pre-miRNA Information
pre-miRNA hsa-mir-548c   
Genomic Coordinates chr12: 64622509 - 64622605
Description Homo sapiens miR-548c stem-loop
Comment Extensive cloning studies suggest that the 5' miRNA may be the predominant one .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-548c-3p
Sequence 61| CAAAAAUCUCAAUUACUUUUGC |82
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23013696 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396767933 3 dbSNP
rs1314622460 7 dbSNP
rs1226739912 9 dbSNP
rs780547012 11 dbSNP
rs747421587 12 dbSNP
rs1298302643 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SPCS3   
Synonyms PRO3567, SPC22/23, SPC3, YLR066W
Description signal peptidase complex subunit 3
Transcript NM_021928   
Expression
Putative miRNA Targets on SPCS3
3'UTR of SPCS3
(miRNA target sites are highlighted)		 
>SPCS3|NM_021928|3'UTR
   1 ATTATTCTGAATTTGAAACAACATATTTTTATACTTAATGAATTGTATCTCATTAATCTCTTCCCTTACATCTTCATGTA
  81 TTGTTGGTTTGTTTTTTGGTTTTGGGTTTTTTTTTTTTTTTTTTTGGTATAAGAACTAACATCAAAAGGCCTGTTTAAAG
 161 GGAAAGGTTAATGGGCTACTTAATATTATGAACAAAACAAAAAAACAAGGCTGCCACAGTGGAATATTATCTTACAAGAA
 241 TAAGAACTACATAAAACAGATTTGTAAAAAATACATATTTGAAGTATTCCCTGTATTTCCATTATTCTTTATGGAATATA
 321 AAGTAAGCATGAAAGGTAGTTAAAACTTTCAGGTGCCTGTAGAGTCATAATAACTGTATTTTATGCCTTGCATTCACGCA
 401 AATTCACATTGGATGTGATTTAAAAGTAGACATTCTCTTTTTCCTCTTTTAGGATATGTTTGATTACTGGAAAATTAATA
 481 TGGTTATTTGTTAGAAGTCTGGTTTATAAAAAAGCCAAAAGTGATGGAATTTATTCCATTTGTCTTAGGAAGGCCCATAA
 561 TACTTGTTTTTCTTACATGTGACTAGCAACTTTCTCCACTTAAAGACTAAATACCTCTTTATATGATGTAAATTATTCTA
 641 ATTCATTTTAAAATCTTTTAGGTCAGCAAAATGTGTGTCTTCAGTGCTTTCTCTAAAAACGTTCCTTTATAGCTTTGTAC
 721 TTTTTTTTTTAGCGTTGCCATTGAAAGTTAAAATGTTTGCATGGTTTACCCTCTGAGTTATGTTTCTTCTAGTGAGCATG
 801 CCTGCTGTCACTAAGTGAATTATTTACTACTTTTTGTAGGTCTATATTTTAATAATTATTGGGATAATAATAATTGTGGT
 881 ATGCTTTCCATTTACAAACCACTCATATACTTTAGTGTATGTCATCCTCAATAATCTAATGAGGTAAGTAGTATAAGTGT
 961 TAGCTCTTTGCAGATAAGAAACTGAAACCCAGAAGTTTATTGAATTGCTTCATTGTTACCTAGCCAGCAAGGAGTGGAAT
1041 TAAAACTTGAACTCAGATCTTCTAATTTTCTGAGCTCATCCTTTCTCTTATACCTCAGATTGCAGACTAATCAAATTTTA
1121 CTTAAAACCTTCCTGATATTTTTGTTACCCTGGACACCCTTTCTATTCTAGAAAAGGTTTCCCATTTTATATGGAAGTGA
1201 CTAATTTTCAAGCTGCCAACAACTTATATCGAGGTAATATTTTATTCTCTGAATAAATTCATTTCACTTATATTAAAAGC
1281 ATAAGGAAATCTACATGTATGTAAAAATAACTTAGAAATTCAGTACATAATACATGATTGAATACATGATCGTATTTAAC
1361 ATGTTTTTTTTTTCTGCAGTGGACAAATAAACATCCTCAAAGTAGCAACTGCAAATCAGTTACCCTTAGAAAAGCAAGAC
1441 CAAACACTGTAGTTACACTATTAGCAGTGACCAAAAAGGGCTAATATTTTCTAAGAATAGTTTAAATTACAGACATTTGT
1521 TATATTTACCTTATGTGAAATACATCACTATTTAATTACATTAATTTTAACATCTGTTGTGTGGAGTTGTATAGTTCATG
1601 CAAAAGCCTGTGGGTATGGGTTTTTCAAACCAGCAGAAAGGTCAAAGGTACCTGAATGCTAAACTGCCTGGCTCCCAGCT
1681 TTTTCATTAAACTTTTCAGGGTCTTGGTTTCTTTATCTGTAAAATGACAGAGTTGGACCAGTTAACTTTAATGGCCATCC
1761 TTTTACACCACACAAGTTGATAAAATTTATCTGTTCAGCAAAGAGATTGAACAAAAAAGCACGTTAGTAATATGAAGACA
1841 GGAAAACGAATGAAAGTCTAACACATAACTCATATTGATTTACTTTATTTCTGTTAGATTTTACACTCTGAAAATTTCAC
1921 CTCATTTAGTTTGTACAAATACTAGACATGGAAACTTAAAATGTGCAGGTGTCAAAGCTTAAAAATCAGGTGTGTCCTCT
2001 TTAAAGGCATGTGCGATAAGCCTGCAGTCTTAACCAGACCTGGTACCAGTTTAACAGTTCATGATACTTCTGTGATGAGT
2081 GGATCTGTTAGTCTGGTAGAGATTAATGTTGAAATTTACTTGAATTACAGTTATTTGACAAGCCCACTTTTTTTGGAGTT
2161 TGGTGAGGAAGATAAGTAAAAATGCCCAACTAGTACAATGTGGAGAAAGTTTTCTGTTTGCTTGACTAAGGGAAATTGCT
2241 CAGAAAAAGAATGCTCCAACATGGGAATAAGGACCTTCAGTCTCAGGAACTCATTTTTGGGTGCAGTTTCTACATTTAAA
2321 AAATTGACTTGTGTTCAGTTTGATAACCAGTTCATTTGCTTTAGTCTCAGTGTTTTAAAGAAGTCTCATAATGTTCTACA
2401 AAGACACAAAGCTTCAGGCTTATACAAAACTGAGTATGATTAGAAATACCTGAGCCCAGAAATGATTCTGAGAAAAGAGA
2481 ATAATTTGAAGACACTTATTTAAAAGTAATTATGGTTAGAAATGAATTAATTTAAAAATGTGTTCACATATCCCTTTCTC
2561 TAACAGTTTAACCTAGACAAACATCTGTATCAGTATTTTTTTATTCCCCTGATTGATTACATTTGGTTTCTTTATTCTGA
2641 AAGGAAAATAACAAAAACTTCAGAAATTCCTAAGGGTGTAATAAGAAAGTGGGTTTTGAGTTTCCTTTCCTGGAATTATT
2721 TTACAGTTCTTTGGTGGGTCTCGTCAGCCAATTCATAGCTGGGCTTTAAGATTATCATCTTAGAGATGATAGATGGGCTT
2801 TTTAAAGATTTCATCTTAGAGATGAAAAGCTGGGCTTTTTCTCTAAGATGATAATCTTAAAGCCCAGCTATTAATTGATA
2881 ATGAACATTTTTCACTATTTTTTTTTCTATCTGAAGCTTAGAGATCTAGAGCTTTGGATCTTTCGGGTATATGTCAATGG
2961 AGGTATTATTTTATAATACTTTGCATTGACATGAAGTGGGTTCATGGGGGAAAACCATGAGCTGTGAACATTGGTAGCAA
3041 ACAAGCATATATTCATTTCAAAACTTTCCTTGCTTTTAGCAGAGAGAAGCCTGTATATGTTACATGTGTGACTTTCAGTA
3121 GTTTAAAGAGATGTTTCAAAAAATTGTTGCATGTTTTTGATGCAATTTGGGAAATTGTTTACTTCACAATGTAGTCATTC
3201 ATAAAAAAATTCATGAAAATACTGAACATATGTTTGAGGATTTTTCTTTTCCTTTTTAAATTTTTTTATTTTTTCTGAGA
3281 CGGAGATCTGCTCTTACGCCCAGGCTAGAGTGAAGTGGCGCGATCTTGGCTTACTGCAACCTCCACCCCCCAGGTTCAAG
3361 CGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGCGCCCGCCACCACGTCCGGCTAATTTTTGTATTTTCAG
3441 TAGAGACGGGGTTTTGCTATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTGCCTCGGCCTCCCAA
3521 AGTGTTAGGATAACAGGTGTGAGCCACCGTGCCCGGCTGAAGATTTTTCTTAATTGCAATAAATATTCAGCATTTTTTCT
3601 AATGAAAATGAATTTTGTTTACCAGTAAAAGTATGCATTTTAAAAGACTTTCAGATTTATGCTTTTTACGTGAAGCTGCT
3681 AAACTAAAAGTAAATGGAAGAAACCAAGTCTAGTAGGTTTTTTCTTTTTTTTTGTGGGGGTGGGATGGGGGAGGTTAGTT
3761 ACACTTAAAATATCTTCTCCAGAGACTGTATGCTCCTATACTAGACTGTAAGCTCTTTGAGGGCAGTCTGTCAGATTTAT
3841 CTTTGTATCTTCCCCAGCGCCTAGTGTAGTGCCTTGCACATAATAGGCGCCCAATAAATATTGATGAAGAATGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUUUUCAUUAACU-CUAAAAAc 5'
            | |  |: |||| ||||||| 
Target 5' gaACATATGTTTGAGGATTTTTc 3'
 3224 - 3246 156.00 -5.80
2 
miRNA  3' cguuuucauuaAC-UCUAAAAAc 5'
                     || |||||||| 
Target 5' ccgtgcccggcTGAAGATTTTTc 3'
 3547 - 3569 147.00 -5.80
3 
miRNA  3' cgUUUUCAUUAACUCUAAAAAc 5'
            ||:  ||:|  ||:||||| 
Target 5' ccAAGTCTAGT--AGGTTTTTt 3'
 3704 - 3723 140.00 -6.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30633175 15 COSMIC
COSN31594014 20 COSMIC
COSN18729326 53 COSMIC
COSN23489451 59 COSMIC
COSN14616954 92 COSMIC
COSN27220148 120 COSMIC
COSN27586088 126 COSMIC
COSN17182035 192 COSMIC
COSN15003322 412 COSMIC
COSN31962357 519 COSMIC
COSN29008962 731 COSMIC
COSN15995819 761 COSMIC
COSN27164029 932 COSMIC
COSN27443958 1374 COSMIC
COSN20091133 1399 COSMIC
COSN5562480 1411 COSMIC
COSN6815981 1592 COSMIC
COSN2010063 1741 COSMIC
COSN22829323 1860 COSMIC
COSN26715572 1860 COSMIC
COSN32064772 1875 COSMIC
COSN25244561 1920 COSMIC
COSN20091134 2054 COSMIC
COSN26194027 2725 COSMIC
COSN32061951 2770 COSMIC
COSN22813678 2907 COSMIC
COSN1292216 3003 COSMIC
COSN31778384 3022 COSMIC
COSN9891208 3124 COSMIC
COSN6815982 3226 COSMIC
COSN25828535 3357 COSMIC
COSN20100823 3734 COSMIC
COSN7754429 3753 COSMIC
COSN14891508 3755 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778185241 2 dbSNP
rs768201113 12 dbSNP
rs749779008 15 dbSNP
rs1276986486 22 dbSNP
rs1380295499 23 dbSNP
rs1359634092 24 dbSNP
rs1204039385 28 dbSNP
rs376892490 32 dbSNP
rs773871178 35 dbSNP
rs1194489276 36 dbSNP
rs1434843781 38 dbSNP
rs745519581 42 dbSNP
rs1443159957 46 dbSNP
rs369185461 48 dbSNP
rs1386111093 49 dbSNP
rs956828587 52 dbSNP
rs2278903 53 dbSNP
rs914885674 56 dbSNP
rs796571936 57 dbSNP
rs1262335244 61 dbSNP
rs942400778 71 dbSNP
rs112954848 76 dbSNP
rs1189398187 79 dbSNP
rs994679249 92 dbSNP
rs933296307 94 dbSNP
rs922333942 98 dbSNP
rs1217891849 99 dbSNP
rs199777393 100 dbSNP
rs907896196 104 dbSNP
rs13102347 105 dbSNP
rs1304125963 107 dbSNP
rs1310399081 107 dbSNP
rs1330762143 107 dbSNP
rs1449306457 107 dbSNP
rs1491095157 107 dbSNP
rs199867915 107 dbSNP
rs55821823 107 dbSNP
rs569173317 107 dbSNP
rs764818670 107 dbSNP
rs879092516 107 dbSNP
rs1491513198 108 dbSNP
rs71596635 108 dbSNP
rs1180159936 109 dbSNP
rs1360956096 109 dbSNP
rs1173930573 110 dbSNP
rs1413810338 111 dbSNP
rs1407327100 112 dbSNP
rs774896779 112 dbSNP
rs1419962928 113 dbSNP
rs1491067013 113 dbSNP
rs1037992023 114 dbSNP
rs1180224349 114 dbSNP
rs899298516 116 dbSNP
rs1357576101 125 dbSNP
rs1434506344 126 dbSNP
rs1483975427 126 dbSNP
rs75649262 127 dbSNP
rs1377839470 130 dbSNP
rs1408513488 132 dbSNP
rs886326472 134 dbSNP
rs1277323897 137 dbSNP
rs1347727805 150 dbSNP
rs1371975374 163 dbSNP
rs1012425058 165 dbSNP
rs1375139124 166 dbSNP
rs1306635152 169 dbSNP
rs141379995 172 dbSNP
rs1381487609 176 dbSNP
rs1301128616 179 dbSNP
rs1044146225 184 dbSNP
rs565642075 186 dbSNP
rs1002648493 187 dbSNP
rs1035761155 188 dbSNP
rs1379427804 189 dbSNP
rs1165088533 191 dbSNP
rs1425145121 194 dbSNP
rs1264610872 199 dbSNP
rs555951901 199 dbSNP
rs12643094 201 dbSNP
rs1352029519 204 dbSNP
rs1260475333 207 dbSNP
rs1245843778 218 dbSNP
rs1323683124 219 dbSNP
rs1209923980 222 dbSNP
rs1010533774 232 dbSNP
rs1021497165 236 dbSNP
rs1300013679 238 dbSNP
rs886612790 240 dbSNP
rs968497509 253 dbSNP
rs1486641123 258 dbSNP
rs1384012907 265 dbSNP
rs1293846923 266 dbSNP
rs974559892 266 dbSNP
rs1232445006 269 dbSNP
rs1163627711 273 dbSNP
rs1434602301 275 dbSNP
rs3733371 276 dbSNP
rs1037990660 288 dbSNP
rs34983053 289 dbSNP
rs768678458 289 dbSNP
rs1178967029 296 dbSNP
rs1261504047 301 dbSNP
rs1012276317 311 dbSNP
rs1210752056 318 dbSNP
rs1423353066 319 dbSNP
rs954941636 328 dbSNP
rs1263971287 330 dbSNP
rs1453967130 347 dbSNP
rs1023658356 352 dbSNP
rs906585396 354 dbSNP
rs1318742292 356 dbSNP
rs1003637336 360 dbSNP
rs987614550 362 dbSNP
rs150100723 364 dbSNP
rs191243241 365 dbSNP
rs1301721631 367 dbSNP
rs540473788 369 dbSNP
rs1038320532 370 dbSNP
rs1388288823 370 dbSNP
rs761352187 376 dbSNP
rs948174843 378 dbSNP
rs1045236967 379 dbSNP
rs1328771521 381 dbSNP
rs906738020 384 dbSNP
rs1200199652 398 dbSNP
rs769337489 398 dbSNP
rs1022237843 399 dbSNP
rs1435340377 402 dbSNP
rs1265667957 407 dbSNP
rs963949381 409 dbSNP
rs1260088481 410 dbSNP
rs371150435 414 dbSNP
rs1442324172 420 dbSNP
rs574590876 433 dbSNP
rs1368388601 434 dbSNP
rs891414960 436 dbSNP
rs3178600 439 dbSNP
rs1256574005 443 dbSNP
rs138377922 455 dbSNP
rs982592033 457 dbSNP
rs1302367838 473 dbSNP
rs3178599 476 dbSNP
rs1303961328 481 dbSNP
rs1349782921 482 dbSNP
rs908027502 503 dbSNP
rs574084709 519 dbSNP
rs1038340177 525 dbSNP
rs920822653 526 dbSNP
rs1021467535 527 dbSNP
rs1206755271 539 dbSNP
rs1467991254 548 dbSNP
rs1251191547 550 dbSNP
rs968594701 556 dbSNP
rs948296445 558 dbSNP
rs149280982 563 dbSNP
rs10520344 565 dbSNP
rs1240329958 577 dbSNP
rs1176984341 584 dbSNP
rs1437363882 585 dbSNP
rs1279382441 587 dbSNP
rs954604521 601 dbSNP
rs1342728923 603 dbSNP
rs1004031033 604 dbSNP
rs1167648733 612 dbSNP
rs1240524331 615 dbSNP
rs1355580168 616 dbSNP
rs1306703005 618 dbSNP
rs1440999994 628 dbSNP
rs1052562817 654 dbSNP
rs1335560426 661 dbSNP
rs1398319098 664 dbSNP
rs766488216 674 dbSNP
rs987926821 676 dbSNP
rs1173552908 677 dbSNP
rs1420750982 679 dbSNP
rs1382530959 683 dbSNP
rs144485453 685 dbSNP
rs1010717735 688 dbSNP
rs1469784756 692 dbSNP
rs1238149552 701 dbSNP
rs3733370 702 dbSNP
rs1391639528 710 dbSNP
rs1489177770 721 dbSNP
rs35238530 721 dbSNP
rs920617591 721 dbSNP
rs973416296 721 dbSNP
rs1222871181 722 dbSNP
rs1439799135 734 dbSNP
rs963896824 735 dbSNP
rs981054696 738 dbSNP
rs565216067 747 dbSNP
rs928082594 748 dbSNP
rs1401107541 756 dbSNP
rs1428411257 759 dbSNP
rs939535594 760 dbSNP
rs1340043885 774 dbSNP
rs1400358534 774 dbSNP
rs376339014 775 dbSNP
rs1165221745 778 dbSNP
rs1216240704 782 dbSNP
rs996722484 794 dbSNP
rs1194352385 802 dbSNP
rs143636450 812 dbSNP
rs1240156013 816 dbSNP
rs1214726537 817 dbSNP
rs1214332507 837 dbSNP
rs1451963173 858 dbSNP
rs1275303287 859 dbSNP
rs1207671900 880 dbSNP
rs1333567257 881 dbSNP
rs369886065 882 dbSNP
rs1445452211 887 dbSNP
rs760040446 896 dbSNP
rs1278231877 899 dbSNP
rs1219809915 900 dbSNP
rs1192966860 903 dbSNP
rs183795954 906 dbSNP
rs1268796402 914 dbSNP
rs891553987 916 dbSNP
rs1350819566 920 dbSNP
rs1325835851 922 dbSNP
rs982925993 925 dbSNP
rs908309772 928 dbSNP
rs1460045026 930 dbSNP
rs1476709176 932 dbSNP
rs1478763933 937 dbSNP
rs1417374345 941 dbSNP
rs546081182 943 dbSNP
rs1417695296 948 dbSNP
rs1478259539 949 dbSNP
rs973566195 954 dbSNP
rs1191391865 964 dbSNP
rs920768057 965 dbSNP
rs948244853 967 dbSNP
rs1199912917 970 dbSNP
rs1305257056 972 dbSNP
rs1396266250 973 dbSNP
rs1042686843 975 dbSNP
rs1045379347 976 dbSNP
rs1214474129 978 dbSNP
rs1398563447 984 dbSNP
rs1368797441 993 dbSNP
rs1276935500 998 dbSNP
rs1439014859 1008 dbSNP
rs1370439333 1010 dbSNP
rs17629999 1011 dbSNP
rs376370609 1013 dbSNP
rs996043146 1013 dbSNP
rs1169700563 1018 dbSNP
rs1414927692 1019 dbSNP
rs576847007 1020 dbSNP
rs140656410 1023 dbSNP
rs1238484413 1037 dbSNP
rs1180114023 1052 dbSNP
rs1231786159 1053 dbSNP
rs1479400291 1053 dbSNP
rs1291379384 1058 dbSNP
rs1313250332 1060 dbSNP
rs1282915067 1062 dbSNP
rs1052884984 1063 dbSNP
rs890246394 1065 dbSNP
rs892524117 1066 dbSNP
rs1347593793 1075 dbSNP
rs1011417684 1078 dbSNP
rs1043502566 1080 dbSNP
rs899716875 1081 dbSNP
rs73871984 1087 dbSNP
rs188364770 1092 dbSNP
rs955196474 1095 dbSNP
rs1360762254 1099 dbSNP
rs1171682933 1101 dbSNP
rs144504501 1109 dbSNP
rs1380662057 1114 dbSNP
rs1160127432 1123 dbSNP
rs1449104897 1125 dbSNP
rs1015687438 1134 dbSNP
rs980978063 1136 dbSNP
rs1406638971 1139 dbSNP
rs1181880120 1148 dbSNP
rs1483943684 1149 dbSNP
rs879020720 1150 dbSNP
rs754041888 1151 dbSNP
rs973820030 1155 dbSNP
rs534176908 1158 dbSNP
rs1027820679 1160 dbSNP
rs1241475989 1161 dbSNP
rs1475798283 1167 dbSNP
rs1306394056 1169 dbSNP
rs150623595 1172 dbSNP
rs1357435914 1175 dbSNP
rs561693311 1178 dbSNP
rs928217261 1196 dbSNP
rs1468339125 1200 dbSNP
rs939613317 1204 dbSNP
rs1451197020 1211 dbSNP
rs988126494 1223 dbSNP
rs371061714 1224 dbSNP
rs181316458 1227 dbSNP
rs536627069 1228 dbSNP
rs946819612 1229 dbSNP
rs1043823869 1231 dbSNP
rs904165083 1232 dbSNP
rs1186462598 1235 dbSNP
rs899663042 1238 dbSNP
rs932510475 1241 dbSNP
rs78770054 1248 dbSNP
rs891015529 1249 dbSNP
rs1207194027 1250 dbSNP
rs527365168 1255 dbSNP
rs1015219048 1262 dbSNP
rs890392239 1268 dbSNP
rs1334055279 1270 dbSNP
rs1238340478 1271 dbSNP
rs1009258825 1272 dbSNP
rs1297468205 1277 dbSNP
rs1380369953 1282 dbSNP
rs576598250 1285 dbSNP
rs898192738 1289 dbSNP
rs1280378746 1294 dbSNP
rs1293788117 1296 dbSNP
rs1014756428 1299 dbSNP
rs995244895 1300 dbSNP
rs779746119 1302 dbSNP
rs1425058614 1304 dbSNP
rs149764279 1326 dbSNP
rs969816253 1327 dbSNP
rs565023106 1328 dbSNP
rs1035607603 1333 dbSNP
rs1213636711 1334 dbSNP
rs572391283 1339 dbSNP
rs1192030082 1342 dbSNP
rs1027743310 1351 dbSNP
rs796848536 1352 dbSNP
rs969352375 1353 dbSNP
rs540935812 1355 dbSNP
rs1253054751 1356 dbSNP
rs1180401056 1361 dbSNP
rs1325667966 1364 dbSNP
rs1442666188 1364 dbSNP
rs367620949 1364 dbSNP
rs878947227 1364 dbSNP
rs980779520 1368 dbSNP
rs988839112 1373 dbSNP
rs1230743800 1374 dbSNP
rs1446960153 1374 dbSNP
rs1441121716 1375 dbSNP
rs1171575763 1377 dbSNP
rs1460882959 1380 dbSNP
rs754983629 1385 dbSNP
rs1372896247 1389 dbSNP
rs946748669 1393 dbSNP
rs988840447 1396 dbSNP
rs186839159 1397 dbSNP
rs748096707 1401 dbSNP
rs1304522461 1402 dbSNP
rs769233896 1407 dbSNP
rs921324199 1409 dbSNP
rs968197187 1412 dbSNP
rs529685214 1418 dbSNP
rs1256369531 1423 dbSNP
rs549746717 1429 dbSNP
rs563087003 1430 dbSNP
rs1302300786 1439 dbSNP
rs772727029 1449 dbSNP
rs1232343524 1451 dbSNP
rs539077779 1452 dbSNP
rs1337050145 1457 dbSNP
rs911572679 1459 dbSNP
rs190082690 1474 dbSNP
rs939948805 1479 dbSNP
rs1236877442 1484 dbSNP
rs1437020424 1510 dbSNP
rs1250150786 1511 dbSNP
rs1173277890 1514 dbSNP
rs1037388192 1515 dbSNP
rs1365617906 1519 dbSNP
rs1339253599 1522 dbSNP
rs551563784 1523 dbSNP
rs527456196 1524 dbSNP
rs898145615 1529 dbSNP
rs1212910284 1549 dbSNP
rs1279292678 1553 dbSNP
rs1484592293 1553 dbSNP
rs1240452009 1557 dbSNP
rs1359367703 1565 dbSNP
rs1352325389 1570 dbSNP
rs1277274489 1573 dbSNP
rs995192511 1576 dbSNP
rs114816648 1577 dbSNP
rs1191357314 1580 dbSNP
rs145769220 1582 dbSNP
rs1454563408 1586 dbSNP
rs547801070 1598 dbSNP
rs567942397 1608 dbSNP
rs1374045772 1609 dbSNP
rs560620436 1610 dbSNP
rs1002311002 1611 dbSNP
rs1387499751 1621 dbSNP
rs1035026545 1627 dbSNP
rs1035193054 1633 dbSNP
rs140573134 1636 dbSNP
rs529397948 1644 dbSNP
rs367779602 1655 dbSNP
rs539105659 1658 dbSNP
rs1256562932 1663 dbSNP
rs1461393864 1675 dbSNP
rs1216164218 1677 dbSNP
rs1448517819 1679 dbSNP
rs1009809221 1680 dbSNP
rs770548912 1682 dbSNP
rs1281781453 1685 dbSNP
rs1204152974 1688 dbSNP
rs1021649380 1689 dbSNP
rs1294537551 1692 dbSNP
rs558802595 1693 dbSNP
rs1354040026 1699 dbSNP
rs1438716297 1701 dbSNP
rs1293207343 1708 dbSNP
rs1325488508 1717 dbSNP
rs1431999855 1719 dbSNP
rs766218576 1727 dbSNP
rs538249020 1729 dbSNP
rs1293843587 1737 dbSNP
rs1326406264 1738 dbSNP
rs979584000 1739 dbSNP
rs144404934 1740 dbSNP
rs1228774770 1748 dbSNP
rs541199083 1755 dbSNP
rs921271567 1760 dbSNP
rs1240099330 1761 dbSNP
rs79886713 1765 dbSNP
rs987327971 1771 dbSNP
rs1274508075 1783 dbSNP
rs1211350986 1786 dbSNP
rs1333506235 1789 dbSNP
rs1273161317 1792 dbSNP
rs953115281 1797 dbSNP
rs1341950982 1799 dbSNP
rs17630023 1810 dbSNP
rs1192750432 1820 dbSNP
rs543063440 1823 dbSNP
rs939875811 1824 dbSNP
rs1036930403 1827 dbSNP
rs919815224 1834 dbSNP
rs35030858 1848 dbSNP
rs1044048590 1849 dbSNP
rs1036258114 1857 dbSNP
rs919186946 1858 dbSNP
rs532100270 1859 dbSNP
rs1164246780 1861 dbSNP
rs1395544705 1865 dbSNP
rs1459620415 1868 dbSNP
rs930574001 1873 dbSNP
rs533103585 1876 dbSNP
rs1454545058 1877 dbSNP
rs1254557750 1879 dbSNP
rs868679797 1892 dbSNP
rs146606212 1904 dbSNP
rs781107746 1906 dbSNP
rs761150316 1907 dbSNP
rs1057313845 1922 dbSNP
rs764103473 1923 dbSNP
rs753915625 1928 dbSNP
rs896448180 1934 dbSNP
rs896634360 1936 dbSNP
rs1010000788 1941 dbSNP
rs1349035864 1942 dbSNP
rs1010126274 1950 dbSNP
rs1305964492 1955 dbSNP
rs1232334466 1958 dbSNP
rs1021180834 1968 dbSNP
rs1298758285 1970 dbSNP
rs750452956 1971 dbSNP
rs968260559 1972 dbSNP
rs1223301676 1980 dbSNP
rs1258817112 1985 dbSNP
rs865850503 1986 dbSNP
rs968237196 1990 dbSNP
rs1171398840 2001 dbSNP
rs1453373147 2003 dbSNP
rs1178365114 2006 dbSNP
rs1479371533 2008 dbSNP
rs1001073879 2011 dbSNP
rs757429158 2012 dbSNP
rs954076554 2015 dbSNP
rs559000193 2020 dbSNP
rs73871985 2025 dbSNP
rs912658766 2029 dbSNP
rs1225593278 2034 dbSNP
rs961499914 2036 dbSNP
rs547958896 2040 dbSNP
rs143387131 2041 dbSNP
rs972127106 2049 dbSNP
rs111465107 2052 dbSNP
rs919762948 2056 dbSNP
rs7688500 2064 dbSNP
rs557614198 2068 dbSNP
rs1433720366 2076 dbSNP
rs571868647 2083 dbSNP
rs1414688347 2084 dbSNP
rs1311812592 2093 dbSNP
rs1379261999 2097 dbSNP
rs1406573004 2098 dbSNP
rs1229472535 2100 dbSNP
rs926934033 2107 dbSNP
rs750663190 2125 dbSNP
rs1056818769 2128 dbSNP
rs984740507 2130 dbSNP
rs1483119416 2134 dbSNP
rs754890543 2136 dbSNP
rs937845284 2137 dbSNP
rs781109055 2138 dbSNP
rs1267534069 2140 dbSNP
rs1169939492 2145 dbSNP
rs182097521 2146 dbSNP
rs1357219007 2148 dbSNP
rs748116242 2150 dbSNP
rs1395303638 2151 dbSNP
rs891510085 2154 dbSNP
rs1362374427 2177 dbSNP
rs1290311646 2186 dbSNP
rs1239548432 2190 dbSNP
rs1344102289 2195 dbSNP
rs539021038 2197 dbSNP
rs1009995455 2200 dbSNP
rs1462554197 2210 dbSNP
rs1420723629 2215 dbSNP
rs1042493384 2220 dbSNP
rs1186398759 2227 dbSNP
rs758469765 2232 dbSNP
rs1210068229 2239 dbSNP
rs1188528508 2241 dbSNP
rs1484983092 2243 dbSNP
rs1258055827 2246 dbSNP
rs1247495383 2252 dbSNP
rs1001063750 2254 dbSNP
rs1028560406 2257 dbSNP
rs1484286559 2263 dbSNP
rs903904123 2264 dbSNP
rs1001037646 2265 dbSNP
rs1175507996 2267 dbSNP
rs1407571624 2268 dbSNP
rs1297395200 2271 dbSNP
rs889762941 2272 dbSNP
rs549719182 2276 dbSNP
rs559122526 2277 dbSNP
rs1391611547 2280 dbSNP
rs780597373 2285 dbSNP
rs1008823373 2289 dbSNP
rs1008619112 2290 dbSNP
rs1019621594 2298 dbSNP
rs961723370 2301 dbSNP
rs972883330 2322 dbSNP
rs148201775 2330 dbSNP
rs187142786 2331 dbSNP
rs554711797 2332 dbSNP
rs966168300 2335 dbSNP
rs971877951 2344 dbSNP
rs1194484167 2353 dbSNP
rs1174823556 2354 dbSNP
rs952553430 2378 dbSNP
rs979998493 2392 dbSNP
rs927171580 2398 dbSNP
rs938626336 2400 dbSNP
rs1449621019 2402 dbSNP
rs1252996490 2413 dbSNP
rs951701007 2414 dbSNP
rs1341165496 2421 dbSNP
rs1303741941 2424 dbSNP
rs984668221 2428 dbSNP
rs926545146 2429 dbSNP
rs529199495 2435 dbSNP
rs748773077 2442 dbSNP
rs574649218 2446 dbSNP
rs1300405063 2450 dbSNP
rs912899288 2452 dbSNP
rs1428277125 2455 dbSNP
rs1389914757 2469 dbSNP
rs543675533 2474 dbSNP
rs1345473752 2478 dbSNP
rs1233219033 2486 dbSNP
rs1279274305 2489 dbSNP
rs945783427 2495 dbSNP
rs1393368160 2496 dbSNP
rs191203914 2499 dbSNP
rs1198328441 2503 dbSNP
rs1042820809 2506 dbSNP
rs1232351256 2509 dbSNP
rs548158825 2513 dbSNP
rs1252638569 2532 dbSNP
rs72708344 2541 dbSNP
rs1180743263 2543 dbSNP
rs1482622778 2549 dbSNP
rs903823636 2552 dbSNP
rs140117482 2556 dbSNP
rs1345211965 2558 dbSNP
rs1273878372 2561 dbSNP
rs1049900373 2571 dbSNP
rs890004108 2576 dbSNP
rs1309839889 2579 dbSNP
rs1008484200 2583 dbSNP
rs1370363671 2586 dbSNP
rs1313810858 2590 dbSNP
rs745487851 2595 dbSNP
rs1400400828 2596 dbSNP
rs1436959976 2596 dbSNP
rs772476077 2603 dbSNP
rs1454406083 2604 dbSNP
rs1020033049 2609 dbSNP
rs77836693 2616 dbSNP
rs1020198510 2617 dbSNP
rs1257970409 2652 dbSNP
rs554213411 2653 dbSNP
rs1484560119 2663 dbSNP
rs1027096068 2668 dbSNP
rs528145047 2677 dbSNP
rs1205322998 2687 dbSNP
rs979903883 2689 dbSNP
rs1332962147 2691 dbSNP
rs1437296257 2694 dbSNP
rs182094280 2695 dbSNP
rs1227109549 2698 dbSNP
rs1350338534 2701 dbSNP
rs541268492 2711 dbSNP
rs1439937012 2719 dbSNP
rs960189268 2730 dbSNP
rs185337399 2735 dbSNP
rs1275189799 2739 dbSNP
rs992796613 2743 dbSNP
rs10520345 2744 dbSNP
rs1212726972 2748 dbSNP
rs1272468406 2749 dbSNP
rs1156947967 2752 dbSNP
rs1456771810 2759 dbSNP
rs1318704513 2760 dbSNP
rs1166981705 2763 dbSNP
rs1471712297 2764 dbSNP
rs1200547321 2767 dbSNP
rs1448317491 2770 dbSNP
rs945758647 2771 dbSNP
rs776591621 2777 dbSNP
rs978462421 2780 dbSNP
rs1334892954 2790 dbSNP
rs1468176938 2797 dbSNP
rs368199340 2814 dbSNP
rs550527520 2820 dbSNP
rs1235634840 2826 dbSNP
rs146381813 2836 dbSNP
rs1474750423 2838 dbSNP
rs1431758299 2843 dbSNP
rs992130111 2851 dbSNP
rs1318770544 2854 dbSNP
rs1434530232 2857 dbSNP
rs917736063 2863 dbSNP
rs966570533 2870 dbSNP
rs1403489966 2882 dbSNP
rs1412821189 2889 dbSNP
rs931743459 2894 dbSNP
rs371515179 2898 dbSNP
rs925381148 2898 dbSNP
rs936784308 2898 dbSNP
rs1049698245 2907 dbSNP
rs1254277514 2908 dbSNP
rs911264394 2910 dbSNP
rs1450320595 2912 dbSNP
rs1289786607 2916 dbSNP
rs1215583240 2920 dbSNP
rs1341883703 2927 dbSNP
rs1049847136 2928 dbSNP
rs372281403 2934 dbSNP
rs890002050 2938 dbSNP
rs1371848920 2942 dbSNP
rs1327944714 2943 dbSNP
rs1434223131 2944 dbSNP
rs113868937 2945 dbSNP
rs1460572697 2946 dbSNP
rs1411487128 2947 dbSNP
rs1041306754 2948 dbSNP
rs897278012 2950 dbSNP
rs767730788 2954 dbSNP
rs897129867 2958 dbSNP
rs1189017000 2962 dbSNP
rs1428307042 2964 dbSNP
rs1477400629 2983 dbSNP
rs1269536595 2992 dbSNP
rs1205799898 2994 dbSNP
rs532598697 2997 dbSNP
rs552595875 3009 dbSNP
rs566053102 3016 dbSNP
rs887512652 3032 dbSNP
rs748885130 3042 dbSNP
rs1220583850 3048 dbSNP
rs1348793001 3050 dbSNP
rs1303676981 3051 dbSNP
rs1217606575 3059 dbSNP
rs1006001687 3069 dbSNP
rs1280095677 3073 dbSNP
rs1291485365 3085 dbSNP
rs1048440261 3094 dbSNP
rs1307106864 3096 dbSNP
rs1435099476 3097 dbSNP
rs888498734 3102 dbSNP
rs1210653641 3108 dbSNP
rs959105563 3109 dbSNP
rs1178307541 3111 dbSNP
rs1473826047 3112 dbSNP
rs1013887838 3113 dbSNP
rs111590018 3114 dbSNP
rs966486965 3126 dbSNP
rs977879558 3132 dbSNP
rs190101727 3143 dbSNP
rs1311699699 3151 dbSNP
rs1284973991 3152 dbSNP
rs1034594833 3154 dbSNP
rs1348628708 3160 dbSNP
rs554492022 3166 dbSNP
rs958112508 3171 dbSNP
rs183083748 3172 dbSNP
rs6831342 3173 dbSNP
rs556880811 3177 dbSNP
rs1474716765 3183 dbSNP
rs1163490626 3186 dbSNP
rs1455172053 3190 dbSNP
rs1410480187 3191 dbSNP
rs1159031279 3198 dbSNP
rs1180344694 3203 dbSNP
rs1475754288 3203 dbSNP
rs944056967 3203 dbSNP
rs1483016684 3211 dbSNP
rs1242904461 3212 dbSNP
rs575586950 3214 dbSNP
rs978367673 3229 dbSNP
rs192869558 3232 dbSNP
rs1233771698 3236 dbSNP
rs1323315879 3242 dbSNP
rs556627777 3247 dbSNP
rs953131604 3250 dbSNP
rs1227396898 3252 dbSNP
rs1362291182 3261 dbSNP
rs985878138 3261 dbSNP
rs1361142694 3269 dbSNP
rs1401749115 3277 dbSNP
rs1432307864 3282 dbSNP
rs545401543 3282 dbSNP
rs1311207641 3283 dbSNP
rs1354905484 3287 dbSNP
rs1245537176 3293 dbSNP
rs1286195644 3296 dbSNP
rs930240398 3297 dbSNP
rs556524926 3298 dbSNP
rs888658227 3299 dbSNP
rs183820712 3305 dbSNP
rs368440506 3306 dbSNP
rs918818278 3308 dbSNP
rs1054891444 3314 dbSNP
rs1247450571 3320 dbSNP
rs767447791 3321 dbSNP
rs572872471 3322 dbSNP
rs541874005 3323 dbSNP
rs1307824941 3332 dbSNP
rs1013263823 3340 dbSNP
rs1225684061 3346 dbSNP
rs1257353827 3348 dbSNP
rs561610639 3350 dbSNP
rs999438123 3351 dbSNP
rs1292261320 3353 dbSNP
rs1001612335 3359 dbSNP
rs1371506561 3361 dbSNP
rs1170750402 3362 dbSNP
rs1055912153 3363 dbSNP
rs1389644572 3370 dbSNP
rs1032127483 3374 dbSNP
rs957873483 3383 dbSNP
rs1421216607 3384 dbSNP
rs1171697874 3385 dbSNP
rs895618224 3395 dbSNP
rs1480856629 3396 dbSNP
rs187746327 3404 dbSNP
rs879549366 3405 dbSNP
rs967231643 3408 dbSNP
rs1280596333 3409 dbSNP
rs1000109788 3413 dbSNP
rs1328825486 3416 dbSNP
rs192512068 3417 dbSNP
rs1310175740 3418 dbSNP
rs113492235 3420 dbSNP
rs985828124 3421 dbSNP
rs937497515 3423 dbSNP
rs1467687734 3434 dbSNP
rs911623661 3435 dbSNP
rs1375946819 3439 dbSNP
rs1232481929 3446 dbSNP
rs966200489 3448 dbSNP
rs1253873287 3450 dbSNP
rs976914379 3457 dbSNP
rs894880279 3458 dbSNP
rs949178669 3460 dbSNP
rs918753685 3463 dbSNP
rs1200580767 3473 dbSNP
rs756017956 3475 dbSNP
rs902221313 3476 dbSNP
rs1408426968 3477 dbSNP
rs999364528 3486 dbSNP
rs1335125715 3489 dbSNP
rs1032221305 3491 dbSNP
rs1238346064 3493 dbSNP
rs777822794 3495 dbSNP
rs753715228 3505 dbSNP
rs1048710202 3508 dbSNP
rs909870615 3509 dbSNP
rs188222190 3511 dbSNP
rs1006739172 3512 dbSNP
rs1457833932 3519 dbSNP
rs71613791 3526 dbSNP
rs965474302 3535 dbSNP
rs1472155772 3539 dbSNP
rs895868730 3542 dbSNP
rs559673802 3543 dbSNP
rs528595280 3549 dbSNP
rs745542458 3550 dbSNP
rs951369419 3555 dbSNP
rs771674177 3556 dbSNP
rs1270625827 3563 dbSNP
rs1227037193 3578 dbSNP
rs984335356 3580 dbSNP
rs1000057830 3591 dbSNP
rs1285097030 3592 dbSNP
rs1439207467 3593 dbSNP
rs1032917565 3612 dbSNP
rs1333723074 3614 dbSNP
rs1338998135 3614 dbSNP
rs1435971917 3621 dbSNP
rs377566739 3628 dbSNP
rs1390867659 3632 dbSNP
rs1318495938 3634 dbSNP
rs1303094771 3635 dbSNP
rs889052372 3636 dbSNP
rs1456580405 3643 dbSNP
rs4279153 3647 dbSNP
rs1332233204 3650 dbSNP
rs1236061435 3651 dbSNP
rs1471684341 3652 dbSNP
rs1367571684 3653 dbSNP
rs4582107 3655 dbSNP
rs780403298 3660 dbSNP
rs1250052147 3669 dbSNP
rs548698707 3670 dbSNP
rs72623906 3684 dbSNP
rs1258340916 3687 dbSNP
rs949155697 3695 dbSNP
rs192861778 3706 dbSNP
rs1283847847 3707 dbSNP
rs1019034643 3713 dbSNP
rs184665539 3721 dbSNP
rs1295420021 3722 dbSNP
rs200736461 3724 dbSNP
rs1434446397 3725 dbSNP
rs367657620 3725 dbSNP
rs397996376 3725 dbSNP
rs67194984 3725 dbSNP
rs372203009 3726 dbSNP
rs923568272 3727 dbSNP
rs965785631 3733 dbSNP
rs201139133 3734 dbSNP
rs201904884 3734 dbSNP
rs202078097 3735 dbSNP
rs1168867196 3738 dbSNP
rs540673345 3739 dbSNP
rs972262927 3746 dbSNP
rs1371214801 3750 dbSNP
rs1477551601 3751 dbSNP
rs1187464720 3754 dbSNP
rs1478053319 3758 dbSNP
rs1053243 3763 dbSNP
rs1402785738 3764 dbSNP
rs1460057684 3774 dbSNP
rs1450274409 3780 dbSNP
rs1053603687 3787 dbSNP
rs138013016 3789 dbSNP
rs1206156804 3791 dbSNP
rs1344653452 3799 dbSNP
rs951554440 3807 dbSNP
rs893712440 3809 dbSNP
rs1227814632 3830 dbSNP
rs1132720 3835 dbSNP
rs910110059 3838 dbSNP
rs1276564741 3840 dbSNP
rs937587541 3841 dbSNP
rs991470052 3846 dbSNP
rs1330301680 3848 dbSNP
rs535082036 3848 dbSNP
rs901038035 3852 dbSNP
rs1431399481 3857 dbSNP
rs143519437 3859 dbSNP
rs1025738099 3860 dbSNP
rs1414567574 3862 dbSNP
rs1426614723 3866 dbSNP
rs1278252977 3867 dbSNP
rs1174833106 3868 dbSNP
rs1319631770 3881 dbSNP
rs951338652 3884 dbSNP
rs770012691 3885 dbSNP
rs1042224115 3889 dbSNP
rs575240355 3890 dbSNP
rs1204030277 3891 dbSNP
rs1016969412 3895 dbSNP
rs1264431020 3901 dbSNP
rs1280738992 3902 dbSNP
rs544040108 3903 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 60559.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000503362.1 | 3UTR | AUUUUUCUUAAUUGCAAUAAAUAUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.607 8.3e-4 -0.524 4.3e-3 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.528 4.8e-3 -0.301 8.1e-2 23 Click to see details
GSE28260 Renal cortex and medulla -0.625 1.1e-2 -0.622 1.2e-2 13 Click to see details
GSE38226 Liver fibrosis -0.471 1.6e-2 -0.522 7.6e-3 21 Click to see details
GSE21687 Ependynoma primary tumors -0.238 2.9e-2 -0.135 1.4e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.359 3.9e-2 -0.239 1.2e-1 25 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.636 4.5e-2 0.810 7.4e-3 8 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.24 1.2e-1 0.215 1.5e-1 25 Click to see details
GSE19783 ER- ER- breast cancer -0.125 1.4e-1 -0.144 1.0e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer 0.211 1.9e-1 0.298 1.0e-1 20 Click to see details
GSE32688 Pancreatic cancer -0.136 2.3e-1 -0.174 1.7e-1 32 Click to see details
GSE17498 Multiple myeloma 0.119 2.3e-1 0.162 1.6e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.166 2.4e-1 0.038 4.4e-1 20 Click to see details
GSE19536 Breast cancer -0.049 3.1e-1 -0.039 3.5e-1 100 Click to see details
GSE27834 Pluripotent stem cells -0.13 3.2e-1 -0.112 3.4e-1 16 Click to see details
GSE17306 Multiple myeloma 0.054 3.6e-1 -0.021 4.4e-1 49 Click to see details
GSE14794 Lymphoblastoid cells 0.032 3.8e-1 0.051 3.2e-1 90 Click to see details
GSE19350 CNS germ cell tumors -0.053 4.4e-1 0.322 1.5e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells -0.012 4.8e-1 0.006 4.9e-1 24 Click to see details
GSE21849 B cell lymphoma 0.008 4.8e-1 -0.058 3.8e-1 29 Click to see details
GSE21032 Prostate cancer 0.004 4.9e-1 0.020 4.3e-1 83 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
459 hsa-miR-548c-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055126 SCD stearoyl-CoA desaturase 2 2
MIRT055360 PDCD4 programmed cell death 4 2 2
MIRT057340 PANK1 pantothenate kinase 1 2 2
MIRT058532 PRDM10 PR/SET domain 10 2 2
MIRT064700 CCND2 cyclin D2 2 4
MIRT068070 SPATA13 spermatogenesis associated 13 2 4
MIRT069438 CDCA4 cell division cycle associated 4 2 4
MIRT070546 EXOC5 exocyst complex component 5 2 2
MIRT070866 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071492 CALM1 calmodulin 1 2 6
MIRT077694 ZNF652 zinc finger protein 652 2 2
MIRT078290 RPS6KB1 ribosomal protein S6 kinase B1 2 2
MIRT080233 SMAD4 SMAD family member 4 2 6
MIRT080612 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT081130 LDLR low density lipoprotein receptor 2 6
MIRT083622 NCOA3 nuclear receptor coactivator 3 2 2
MIRT088674 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT089617 MAT2A methionine adenosyltransferase 2A 2 2
MIRT091138 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT091699 TGFBR2 transforming growth factor beta receptor 2 2 4
MIRT093590 SPCS3 signal peptidase complex subunit 3 2 2
MIRT096243 CANX calnexin 2 2
MIRT099747 SOX4 SRY-box 4 2 6
MIRT101977 EPHA7 EPH receptor A7 2 4
MIRT102959 EN2 engrailed homeobox 2 2 4
MIRT107464 NFIB nuclear factor I B 2 2
MIRT107876 FXN frataxin 2 2
MIRT110174 ZNF711 zinc finger protein 711 2 2
MIRT115410 UNKL unkempt family like zinc finger 2 4
MIRT121611 LMNB1 lamin B1 2 2
MIRT130394 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT134673 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT142311 RBBP6 RB binding protein 6, ubiquitin ligase 2 2
MIRT165349 AFF4 AF4/FMR2 family member 4 2 2
MIRT165649 DCTN4 dynactin subunit 4 2 2
MIRT166971 FCHO2 FCH domain only 2 2 2
MIRT176163 PGK1 phosphoglycerate kinase 1 2 2
MIRT181740 UHMK1 U2AF homology motif kinase 1 2 4
MIRT186876 CCNT1 cyclin T1 2 2
MIRT187285 DAZAP2 DAZ associated protein 2 2 2
MIRT188824 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 4
MIRT196761 CRLF3 cytokine receptor like factor 3 2 2
MIRT200994 ZNF805 zinc finger protein 805 2 4
MIRT203681 DIP2A disco interacting protein 2 homolog A 2 2
MIRT206304 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT208377 SLC25A36 solute carrier family 25 member 36 2 2
MIRT211083 C4ORF32 family with sequence similarity 241 member A 2 2
MIRT211231 FGF2 fibroblast growth factor 2 2 6
MIRT212651 SH3BP2 SH3 domain binding protein 2 2 2
MIRT217310 FOXO3 forkhead box O3 2 2
MIRT218910 GLO1 glyoxalase I 2 4
MIRT223962 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT242382 TMC5 transmembrane channel like 5 2 2
MIRT262836 CCDC6 coiled-coil domain containing 6 2 2
MIRT264533 TARDBP TAR DNA binding protein 2 6
MIRT273412 SLC11A2 solute carrier family 11 member 2 2 2
MIRT274711 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT275277 NUDT4 nudix hydrolase 4 2 2
MIRT298516 SPOPL speckle type BTB/POZ protein like 2 2
MIRT298567 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT302422 CLIP4 CAP-Gly domain containing linker protein family member 4 2 4
MIRT320613 ZNRF2 zinc and ring finger 2 2 2
MIRT320791 PURB purine rich element binding protein B 2 2
MIRT322922 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT340714 MZT1 mitotic spindle organizing protein 1 2 2
MIRT347234 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT348559 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT354233 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT354310 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT358523 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT362352 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT363825 GOLGA7 golgin A7 2 2
MIRT367234 RPL5 ribosomal protein L5 2 6
MIRT368206 ADIPOR2 adiponectin receptor 2 2 2
MIRT372013 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 4
MIRT374304 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT377387 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT379837 USP6NL USP6 N-terminal like 2 8
MIRT392413 RREB1 ras responsive element binding protein 1 2 4
MIRT395591 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT400810 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT401743 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT408462 MTX3 metaxin 3 2 2
MIRT441521 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT442173 AZF1 azoospermia factor 1 2 2
MIRT443086 ABLIM1 actin binding LIM protein 1 2 2
MIRT443391 CHML CHM like, Rab escort protein 2 2 2
MIRT443459 ANP32B acidic nuclear phosphoprotein 32 family member B 2 6
MIRT443653 MRAS muscle RAS oncogene homolog 2 2
MIRT443718 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT443963 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT444249 CTNND1 catenin delta 1 2 2
MIRT444795 TMEM251 transmembrane protein 251 2 2
MIRT444943 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT445180 ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 2 2
MIRT445334 CWC27 CWC27 spliceosome associated protein homolog 2 2
MIRT445707 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT446048 TPR translocated promoter region, nuclear basket protein 2 2
MIRT446091 ENAH ENAH, actin regulator 2 2
MIRT446236 FZD6 frizzled class receptor 6 2 4
MIRT446543 GOLGA8B golgin A8 family member B 2 2
MIRT446592 FBXO40 F-box protein 40 2 2
MIRT446741 MYEF2 myelin expression factor 2 2 2
MIRT446775 ATAD5 ATPase family, AAA domain containing 5 2 2
MIRT447451 ADM adrenomedullin 2 2
MIRT447801 EPC2 enhancer of polycomb homolog 2 2 2
MIRT448179 IL1RAP interleukin 1 receptor accessory protein 2 4
MIRT448773 GOLGA8A golgin A8 family member A 2 2
MIRT449473 HAT1 histone acetyltransferase 1 2 2
MIRT449635 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT450237 CDKN2AIP CDKN2A interacting protein 2 2
MIRT450379 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT450506 ALPK3 alpha kinase 3 2 2
MIRT451500 FOPNL FGFR1OP N-terminal like 2 2
MIRT452105 NUCB2 nucleobindin 2 2 2
MIRT456851 ZNF460 zinc finger protein 460 2 2
MIRT463263 ZIC5 Zic family member 5 2 4
MIRT463348 ZFHX3 zinc finger homeobox 3 2 2
MIRT464778 UBE2G1 ubiquitin conjugating enzyme E2 G1 2 2
MIRT467594 SLC7A5 solute carrier family 7 member 5 2 6
MIRT468223 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468469 SET SET nuclear proto-oncogene 2 4
MIRT469368 REST RE1 silencing transcription factor 2 6
MIRT470526 PPP1CC protein phosphatase 1 catalytic subunit gamma 2 4
MIRT472908 MT1E metallothionein 1E 2 2
MIRT473336 METTL21A methyltransferase like 21A 2 2
MIRT476666 FXR1 FMR1 autosomal homolog 1 2 2
MIRT477145 FAM102B family with sequence similarity 102 member B 2 2
MIRT478928 CPNE3 copine 3 2 2
MIRT479047 COIL coilin 2 8
MIRT481917 ANKRD40 ankyrin repeat domain 40 2 6
MIRT483700 BICD2 BICD cargo adaptor 2 2 8
MIRT483889 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT484733 SF3A1 splicing factor 3a subunit 1 2 2
MIRT485053 THBS1 thrombospondin 1 2 2
MIRT485497 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT485747 CALCR calcitonin receptor 2 2
MIRT486125 MT2A metallothionein 2A 2 2
MIRT494099 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT494103 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT499091 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT501109 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503173 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT504132 RCC1 regulator of chromosome condensation 1 2 6
MIRT504717 DLC1 DLC1 Rho GTPase activating protein 2 6
MIRT505379 TMEM154 transmembrane protein 154 2 4
MIRT505657 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT505887 RNF219 ring finger protein 219 2 2
MIRT506525 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507083 GXYLT1 glucoside xylosyltransferase 1 2 6
MIRT507090 GPR180 G protein-coupled receptor 180 2 6
MIRT507174 GAN gigaxonin 2 10
MIRT507940 BTG3 BTG anti-proliferation factor 3 2 6
MIRT508316 RPL18 ribosomal protein L18 2 4
MIRT509452 CAPRIN1 cell cycle associated protein 1 2 4
MIRT509488 LARP1 La ribonucleoprotein domain family member 1 2 10
MIRT509609 GALK2 galactokinase 2 2 8
MIRT510229 PLEKHG3 pleckstrin homology and RhoGEF domain containing G3 2 8
MIRT510607 TPPP tubulin polymerization promoting protein 2 6
MIRT510842 RARB retinoic acid receptor beta 2 6
MIRT510983 PFN2 profilin 2 2 6
MIRT511370 IKZF4 IKAROS family zinc finger 4 2 6
MIRT512481 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 4
MIRT513061 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT513873 HOXA5 homeobox A5 2 2
MIRT515645 MYBPC1 myosin binding protein C, slow type 2 2
MIRT516649 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT516926 OSTF1 osteoclast stimulating factor 1 2 6
MIRT517348 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 6
MIRT519196 NAA38 LSM8 homolog, U6 small nuclear RNA associated 2 6
MIRT520215 WASL Wiskott-Aldrich syndrome like 2 8
MIRT520541 TRA2B transformer 2 beta homolog 2 4
MIRT521613 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT522258 NLK nemo like kinase 2 2
MIRT522809 KPNA3 karyopherin subunit alpha 3 2 6
MIRT522945 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT523347 GUCD1 guanylyl cyclase domain containing 1 2 4
MIRT523375 GSR glutathione-disulfide reductase 2 4
MIRT525158 ZNF329 zinc finger protein 329 2 2
MIRT526066 CCDC81 coiled-coil domain containing 81 2 2
MIRT526164 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT526182 HEPH hephaestin 2 2
MIRT526646 TRIM16L tripartite motif containing 16 like 2 2
MIRT527156 SCN9A sodium voltage-gated channel alpha subunit 9 2 4
MIRT527442 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527685 ZNF552 zinc finger protein 552 2 4
MIRT527751 NANOGNB NANOG neighbor homeobox 2 2
MIRT527788 TMEM44 transmembrane protein 44 2 8
MIRT528462 NXT2 nuclear transport factor 2 like export factor 2 2 4
MIRT528869 RSPH3 radial spoke head 3 homolog 2 2
MIRT529046 ARL9 ADP ribosylation factor like GTPase 9 2 2
MIRT529107 TLL2 tolloid like 2 2 2
MIRT529377 SKP1 S-phase kinase associated protein 1 2 4
MIRT529403 ICK intestinal cell kinase 2 2
MIRT529591 TMEM220 transmembrane protein 220 2 2
MIRT530213 NSUN7 NOP2/Sun RNA methyltransferase family member 7 2 2
MIRT530800 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT530839 MAPK7 mitogen-activated protein kinase 7 2 2
MIRT530859 TTLL5 tubulin tyrosine ligase like 5 2 2
MIRT531433 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT532311 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT532501 HOXA13 homeobox A13 2 2
MIRT532601 SIX4 SIX homeobox 4 2 2
MIRT533356 UBE2W ubiquitin conjugating enzyme E2 W 2 4
MIRT534389 SEPT2 septin 2 2 2
MIRT534798 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT536193 MAML3 mastermind like transcriptional coactivator 3 2 2
MIRT536243 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT536534 KCTD10 potassium channel tetramerization domain containing 10 2 2
MIRT536932 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2 2
MIRT538628 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT538836 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT538944 BMP2K BMP2 inducible kinase 2 2
MIRT539038 ATXN7L1 ataxin 7 like 1 2 2
MIRT539379 ADSS adenylosuccinate synthase 2 6
MIRT539746 SH3RF2 SH3 domain containing ring finger 2 2 2
MIRT539879 RPL32 ribosomal protein L32 2 2
MIRT539956 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT540458 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT541611 ASB11 ankyrin repeat and SOCS box containing 11 2 2
MIRT543034 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT544838 PLA2G16 phospholipase A2 group XVI 2 2
MIRT546177 TRIAP1 TP53 regulated inhibitor of apoptosis 1 2 2
MIRT546320 TM9SF3 transmembrane 9 superfamily member 3 2 4
MIRT546897 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT546950 SFTPA1 surfactant protein A1 2 2
MIRT547166 PDZD8 PDZ domain containing 8 2 2
MIRT547323 NPTN neuroplastin 2 2
MIRT547359 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT547562 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548082 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548218 FKBP1A FK506 binding protein 1A 2 2
MIRT548768 CNN3 calponin 3 2 2
MIRT548925 CDK6 cyclin dependent kinase 6 2 2
MIRT548954 CDC27 cell division cycle 27 2 2
MIRT549696 TLE3 transducin like enhancer of split 3 2 4
MIRT549734 NUP37 nucleoporin 37 2 2
MIRT549863 MCM4 minichromosome maintenance complex component 4 2 2
MIRT551070 MKLN1 muskelin 1 2 2
MIRT551194 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT552113 EMC7 ER membrane protein complex subunit 7 2 2
MIRT552236 SART3 squamous cell carcinoma antigen recognized by T-cells 3 2 2
MIRT552287 CBY1 chibby family member 1, beta catenin antagonist 2 4
MIRT552468 ZNF280B zinc finger protein 280B 2 2
MIRT553628 TJP1 tight junction protein 1 2 2
MIRT555507 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT556953 IGF1R insulin like growth factor 1 receptor 2 4
MIRT557203 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 4
MIRT557538 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT557603 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT558233 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT558261 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT558336 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558875 CCT6A chaperonin containing TCP1 subunit 6A 2 2
MIRT559684 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT559986 RPL24 ribosomal protein L24 2 2
MIRT561051 SKP2 S-phase kinase associated protein 2 2 2
MIRT561783 PAXBP1 PAX3 and PAX7 binding protein 1 2 2
MIRT561833 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT562588 CBX2 chromobox 2 2 2
MIRT562956 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563047 NBPF12 NBPF member 12 2 2
MIRT563157 NOLC1 nucleolar and coiled-body phosphoprotein 1 2 2
MIRT563213 ZNF813 zinc finger protein 813 2 2
MIRT563436 SLC3A2 solute carrier family 3 member 2 2 2
MIRT563927 STAT2 signal transducer and activator of transcription 2 2 2
MIRT564149 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT564204 ABT1 activator of basal transcription 1 2 2
MIRT564214 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564637 ZNF562 zinc finger protein 562 2 4
MIRT564932 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT565587 SLC6A8 solute carrier family 6 member 8 2 2
MIRT565667 SIX1 SIX homeobox 1 2 2
MIRT566233 PTMA prothymosin, alpha 2 2
MIRT566237 PTCH1 patched 1 2 2
MIRT566454 PHAX phosphorylated adaptor for RNA export 2 4
MIRT566949 LEPROT leptin receptor overlapping transcript 2 2
MIRT567323 HMGB2 high mobility group box 2 2 2
MIRT568381 ATP13A3 ATPase 13A3 2 2
MIRT568427 ATF7IP activating transcription factor 7 interacting protein 2 4
MIRT571579 USP15 ubiquitin specific peptidase 15 2 2
MIRT572335 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT573391 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT573574 RANBP1 RAN binding protein 1 2 2
MIRT574388 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT576611 Ccdc117 coiled-coil domain containing 117 2 2
MIRT608962 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609962 ATF7IP2 activating transcription factor 7 interacting protein 2 2 2
MIRT611714 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT613603 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT614014 PAOX polyamine oxidase 2 2
MIRT614159 GNA14 G protein subunit alpha 14 2 2
MIRT614181 FAM53B family with sequence similarity 53 member B 2 2
MIRT614544 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 2 2
MIRT615284 FGF5 fibroblast growth factor 5 2 2
MIRT615831 PCSK7 proprotein convertase subtilisin/kexin type 7 2 2
MIRT618541 SEMA5A semaphorin 5A 2 2
MIRT619136 MCOLN3 mucolipin 3 2 2
MIRT619455 NUP214 nucleoporin 214 2 2
MIRT620038 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT620243 CCDC65 coiled-coil domain containing 65 2 2
MIRT620369 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT620474 CERS6 ceramide synthase 6 2 2
MIRT620881 KCTD7 potassium channel tetramerization domain containing 7 2 2
MIRT621948 STYX serine/threonine/tyrosine interacting protein 2 2
MIRT622156 SNTG1 syntrophin gamma 1 2 2
MIRT622312 SETD5 SET domain containing 5 2 2
MIRT622486 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT623190 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT623650 HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 2 2
MIRT623655 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT624403 CCDC80 coiled-coil domain containing 80 2 4
MIRT624489 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 2 2
MIRT624694 AR androgen receptor 2 2
MIRT625011 PAK4 p21 (RAC1) activated kinase 4 2 2
MIRT625792 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha 2 2
MIRT625987 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626122 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626394 ZMYM6 zinc finger MYM-type containing 6 2 2
MIRT626560 NAGS N-acetylglutamate synthase 2 2
MIRT626568 DRAM2 DNA damage regulated autophagy modulator 2 2 2
MIRT626647 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT626956 PRDM2 PR/SET domain 2 2 2
MIRT627868 PARVB parvin beta 2 2
MIRT628071 KCNJ13 potassium voltage-gated channel subfamily J member 13 2 2
MIRT628198 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 2 2
MIRT630547 GJB7 gap junction protein beta 7 2 2
MIRT633570 LAMP2 lysosomal associated membrane protein 2 2 2
MIRT635535 ELMOD2 ELMO domain containing 2 2 2
MIRT636219 SNAI2 snail family transcriptional repressor 2 2 2
MIRT636614 CLIC5 chloride intracellular channel 5 2 2
MIRT640754 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640996 PROK2 prokineticin 2 2 2
MIRT641143 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT642288 ZNF99 zinc finger protein 99 2 2
MIRT643506 ZNF28 zinc finger protein 28 2 2
MIRT644027 ZNF792 zinc finger protein 792 2 2
MIRT644073 PARG poly(ADP-ribose) glycohydrolase 2 2
MIRT644598 SPOP speckle type BTB/POZ protein 2 2
MIRT644631 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT644955 IFNB1 interferon beta 1 2 2
MIRT646357 CPT1B carnitine palmitoyltransferase 1B 2 2
MIRT647624 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT649089 FBXO25 F-box protein 25 2 4
MIRT649382 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT651176 ZNF319 zinc finger protein 319 2 2
MIRT652305 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652393 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT652815 TBL2 transducin beta like 2 2 2
MIRT653111 SRSF1 serine and arginine rich splicing factor 1 2 2
MIRT653145 SRPK2 SRSF protein kinase 2 2 2
MIRT653815 SIN3A SIN3 transcription regulator family member A 2 2
MIRT653947 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 2 2
MIRT655157 PHF21A PHD finger protein 21A 2 2
MIRT655317 PDCD11 programmed cell death 11 2 2
MIRT656937 KIAA1456 KIAA1456 2 2
MIRT657000 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT657557 GSK3B glycogen synthase kinase 3 beta 2 2
MIRT657692 GPR135 G protein-coupled receptor 135 2 2
MIRT658251 FAXC failed axon connections homolog 2 2
MIRT658717 ELOVL4 ELOVL fatty acid elongase 4 2 2
MIRT659421 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT659488 CLDN1 claudin 1 2 2
MIRT659534 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT659574 CEP85L centrosomal protein 85 like 2 2
MIRT660570 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT661595 BMPR1B bone morphogenetic protein receptor type 1B 2 2
MIRT661844 ZNF587B zinc finger protein 587B 2 2
MIRT663397 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT664409 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT664804 GALC galactosylceramidase 2 2
MIRT664834 GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 2 2
MIRT666146 SP4 Sp4 transcription factor 2 2
MIRT666779 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT667105 SLC25A2 solute carrier family 25 member 2 2 2
MIRT667115 OLA1 Obg like ATPase 1 2 2
MIRT667504 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT668011 HCFC2 host cell factor C2 2 2
MIRT672876 TTC28 tetratricopeptide repeat domain 28 2 2
MIRT682598 CPA4 carboxypeptidase A4 2 2
MIRT683340 ZNF581 zinc finger protein 581 2 2
MIRT683581 CARD8 caspase recruitment domain family member 8 2 2
MIRT683691 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683712 EXOSC6 exosome component 6 2 4
MIRT684560 ZNF708 zinc finger protein 708 2 2
MIRT685425 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT685509 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT686052 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686140 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT686425 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT687716 KLF2 Kruppel like factor 2 2 2
MIRT687727 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT688183 FRRS1 ferric chelate reductase 1 2 2
MIRT688306 FAM208A family with sequence similarity 208 member A 2 2
MIRT688420 DUSP2 dual specificity phosphatase 2 2 2
MIRT688491 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT688725 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689208 ZNF574 zinc finger protein 574 2 2
MIRT690340 DHX36 DEAH-box helicase 36 2 2
MIRT690516 ZNF845 zinc finger protein 845 2 2
MIRT690614 DCTN3 dynactin subunit 3 2 2
MIRT691051 RDH13 retinol dehydrogenase 13 2 2
MIRT691265 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT692171 RNF207 ring finger protein 207 2 2
MIRT692728 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT693384 ZNF528 zinc finger protein 528 2 2
MIRT694449 GSG2 histone H3 associated protein kinase 2 2
MIRT694485 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT695650 NUP205 nucleoporin 205 2 2
MIRT695803 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT696128 GLP2R glucagon like peptide 2 receptor 2 2
MIRT696694 APOC3 apolipoprotein C3 2 2
MIRT696888 SAMD15 sterile alpha motif domain containing 15 2 2
MIRT697790 UBXN7 UBX domain protein 7 2 2
MIRT698144 TNPO3 transportin 3 2 2
MIRT698363 TMEM127 transmembrane protein 127 2 2
MIRT698489 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699121 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT699849 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT701321 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT701386 NOA1 nitric oxide associated 1 2 2
MIRT701391 NLRC3 NLR family CARD domain containing 3 2 2
MIRT701954 MITF melanogenesis associated transcription factor 2 2
MIRT702167 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT702782 IFNLR1 interferon lambda receptor 1 2 2
MIRT703466 FOXJ3 forkhead box J3 2 2
MIRT703968 EMP2 epithelial membrane protein 2 2 2
MIRT703973 EMC10 ER membrane protein complex subunit 10 2 2
MIRT704350 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704603 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705272 BAHD1 bromo adjacent homology domain containing 1 2 2
MIRT707156 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707271 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT707461 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707505 AXL AXL receptor tyrosine kinase 2 2
MIRT707705 FAM118A family with sequence similarity 118 member A 2 2
MIRT707722 CDC6 cell division cycle 6 2 2
MIRT708018 TSPAN1 tetraspanin 1 2 2
MIRT708071 LIX1L limb and CNS expressed 1 like 2 2
MIRT708139 GK5 glycerol kinase 5 (putative) 2 2
MIRT710550 NR4A2 nuclear receptor subfamily 4 group A member 2 2 2
MIRT713228 GPR75 G protein-coupled receptor 75 2 2
MIRT713273 SPRTN SprT-like N-terminal domain 2 2
MIRT715622 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT716477 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT716492 ZNF394 zinc finger protein 394 2 2
MIRT717715 NCKAP1 NCK associated protein 1 2 2
MIRT718046 ANAPC1 anaphase promoting complex subunit 1 2 2
MIRT719400 SLC15A4 solute carrier family 15 member 4 2 2
MIRT719899 PTGIS prostaglandin I2 synthase 2 2
MIRT720781 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722063 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
MIRT723234 FAM91A1 family with sequence similarity 91 member A1 2 2
MIRT723768 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT724057 FAM84A family with sequence similarity 84 member A 2 2
MIRT725194 SDAD1 SDA1 domain containing 1 2 2
MIRT735687 IL6ST interleukin 6 signal transducer 2 0
MIRT735689 ACVR1C activin A receptor type 1C 2 0
MIRT736080 SPOCK1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-548c-3p Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548c Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-548c-3p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (HepG2, Hep-394, Hep-SWX, Huh-7)
hsa-miR-548c-3p Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548c-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548c-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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