miRTarBase - #MIRT094685


—
pre-miRNA Information
pre-miRNA hsa-mir-548w   
Genomic Coordinates chr16: 26025237 - 26025310
Description Homo sapiens miR-548w stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548w
Sequence 10| AAAAGUAACUGCGGUUUUUGCCU |32
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 16 + 26025249 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs918935898 1 dbSNP
rs573018690 4 dbSNP
rs1355338018 5 dbSNP
rs1232952112 7 dbSNP
rs768527810 12 dbSNP
rs1331351492 13 dbSNP
rs925963272 14 dbSNP
rs1299975801 16 dbSNP
rs1247960808 17 dbSNP
rs1217191628 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol FEM1C   
Synonyms EUROIMAGE686608, EUROIMAGE783647, FEM1A
Description fem-1 homolog C
Transcript NM_020177   
Expression
Putative miRNA Targets on FEM1C
3'UTR of FEM1C
(miRNA target sites are highlighted)		 
>FEM1C|NM_020177|3'UTR
   1 TAACTTGACTGTATTTTAGCACTGTTAAAGCACGAATTGGTAACAGTTGTTTCATAAATGAGCACTGTTGTGATAACACC
  81 AGCATTCATTTAGCTTGATTGATATCATTGTGCTCTCATTGGCTAAAGCATTATAAGCATCAAATTTACAACATTGGTTT
 161 CCCAATATTTAATATAAATATACCATATAATATATTGTTTGTGAATTATTGAGAAATGTAACATTCAAATTTCTAAAATT
 241 GTCTGCCAAAGGCTTATTCATTCTGGTTTTGTTTGCTGTTGGGTGTTTGGGGCAGAGTTAACCATTTCTCCATGGTGTCT
 321 TTATACTTTACTGGTTTGTGAATTTTATACAATTGAAAGTCTTTTTTTCTTGCTTCTTTCTTCTCTTCTCAAGTTTCCCC
 401 CCTGTTTCTACTTTATTGTTTGTCCTAACCATTTCTACTACAGTTTTTTCCTTATGGACCCATACTAGGTTGTACAAACC
 481 TTAAGGACTCGTTACCATTTGCAGTTACCATAAGTGCTTTATCTTCTCTATGCACAGGCTTAAACTTGACTGTTGTATGT
 561 TAGCATATTTTCTATGCAGCAGTTGGTCAACTTCAACTCAAAACACTGTTTTCTTATGTTTGTTACAAACTTAATTTTTT
 641 GAAAGTACTCTGTAGCATGACAATTTTTAGAGCTGCAGGTTAGCTATTATAGCTCAAGCTTTTTTGTTTGTTTTTTTCTT
 721 CACTTTCTTCACATCTGAGGTTTCTTTCTCTAATCCACTGAAATTATTGTGTGCTAAATTTGGGAAACAGATCTATTCTA
 801 ACTCATTAACCCAGTTGAAATTTAGGTCTGTCATCTTAATATATCATGCAGTAAAAGGAAGAATCTTTTTAAAGTGACCC
 881 ACCTTTCATGCTGCTCCAGCATTGTCCTGCTTGTGCTGATGGTGTGATTAGGTGTAGAGAATTTGCTTAAATTTAACTTC
 961 AAAGTTCATCACACAGCTTAATGAGTCACATTGAAATACTCAGTAATTGAACTGCAAATCACTTTTAGTTACAAAAAGAG
1041 CTAAAGCATGTCAGTGGCATGATGCTTGCCAAGCCAGATCTAGGCATCTAGGATAATTAAGGTATTTTAGTATGCAATTT
1121 ACTGCCATAATATCAAAGGTCAGTAACAGTGTTCTTTCTTTCTTCAAGCTTATGTATACCTTTAAAGATAACTTGCATGA
1201 ATTACTTTGATTACTTTGGTCTCAATTATTTGTCACCCCAGTTAAACATGAAAGGTTGCAGTGCTTCCTGTTCCCTTACT
1281 GGAAGTTAGCTTTTTCTTTTCTCTTTCTTCCTTTCTTTCTCTCACTCTTTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCT
1361 CTCTCACTCACTCACTCACAGATTTGCTAATGCCACAGAAAGGGCTCTTTTAACTTAAGATAAGTGAAAAGTACTAAAAA
1441 AGATTCAGGTAATTATCATTCAGCACTTTATTGTAATTCAGAATAAAATTTATGATGGCATATTTGCCCTGCAAATGTCT
1521 TAATGAAGTTGTTCTCAATAAAAAGCTCCTTATTGATTTGAGAAAAACTCAGTTTACCTGTGAGTTCAATGAGCTGGATC
1601 ACTCACTTGGATTTTTGTGTTGACATTTTATTCTGAGGGTTGATGTTACACTATTTAAGGAGTCATCAATGCAAACAGTC
1681 ACATTAGGTATGTCATCATCTTTAGTCAGTAAAAACCTTGTAATGAGGAGTAGTAAATAAACAAGAGAACATTAGACTTT
1761 TTGGTTAAATAATTGAGATTTAATTTTTAAAAGATATTCTTACTCATTTGCTAGGTTGTAAATTTGATTTCACCATTAAG
1841 AAAAGGTAAATTGGATATAAATGAACGATCTCCAACTTTTTGATGAAGAGGTTTTACTATCTCTCACTGTGGGAAAATTT
1921 GATGAAATATTTGAACTGTCACATATATTAAGAATACTTTATGATTTAGACCAATATTCTAGAAATATCAAATGTCAGTA
2001 TCTTGAAATCATCTGCCTCTAACTTTGTGGTATAAGAATTATATATGAATAAGCTATTATTTTTATAAAGGAAAACTTTG
2081 CCATTATAGTAAATTACATTAGTTGATCTCGATAATTTGAGGATAACAGATGACAATTGAATTTTTAATTGATTTAGTAT
2161 TTCCTCCTCCTCTTTGGGGGCTGGGTGGGAGGGCTTACATGCTCTTATAGTGAGGCACATCTCACTGTTTTGCAGCAGAA
2241 TTTGAATTGTGCAACTCCTGTGTAAAGTAAGGATTTCTTTAAATAGCATTTTTGCACCAGTAAAAATAGATAACTTAGAA
2321 CTCAGTCTTGATAACTGAAATGACTTATTTCACTTAGAATACATTTCTCCCTTCTCTGCCATCTCCACAAATGCCATTGG
2401 GAGGTTTTGAAAAACCAGTTAATTTAATAGCTCAAAATTGTCCCTGATTTTATTTTCTTTTAGGGAAAATTGTTTCATAA
2481 ATGTGACACTGATAAAGCCTTTGTCAGAAAGTATTCTCACAATTATGAGATGGATTATAATAAAATACTTAAATTTGTGT
2561 TATTTTTTGAACCACAGATGAGTAAATTTAATAATGAACCAATTACACTCTTGAGTCTAACTAAACTGTACACTGTAGCA
2641 CGGTGTTATTGACTGGAGTTAATGTGTAAGTTATTAACATTTCTATGAAAATGCCCTTTTGGGGCCTCCTGAATTTTAGA
2721 TGTTCCACTGTTTTGATCATTTCTATAAAAGAAATGGTCATTTTACTTAGATGCCAGTCTACTTTATAAAGACAAATGGA
2801 TTATAGACTTAAAAATAGTCATTTTTCTTATTCATAAATCTGACAGGCATAAACCCAAATCAAAGATAATTTGGTGCCCA
2881 TTATGAATTTGAAGTTAAGTGATAGCTCACTTGTAAAGTGACTACCTTAATGTGTATAGAGACCCCAGTCTACTATTATT
2961 TGGGAAAATTGTTTAGGTTATATGGGAAAAGTAGCTCTTTAAAAATCATATTGCCCAACAGAAACCTTAGGCTGAATTTA
3041 CAGGTATGATAATTTTTGTAATTAATTTTCTTAGAATTGTGCAGGCTGGATGAGATAATGACATACTCTTTTACACTGTA
3121 ACAGCAGCATTATTGCCTAGAACTTTAACCATTTTAGAGTTAGATACTAAGGAAACAAACTAATTGGTCATCATCATTTT
3201 CTTTTTTTCTTTTTCTTTTTTTTTTTTTTGCCCTTATGTGTCACTAAACAACTAGTTTCTCTCCCTTTTGTCAGTTCCCA
3281 TTGTGTATTTTTTCAAAAGAAGTACTGTATTCGGATGCCAGCTAATAAATTGTCACACAATGGAAAATCATATGCCACAA
3361 CATTCATTGTAAGGTTTAATAAAATTAAATTTGCACC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucCGU-UUU--UGGCGUCAAUGAAAa 5'
            ||| :||  ||: :: ||||||| 
Target 5' ttGCATGAATTACTTTGATTACTTTg 3'
 1193 - 1218 155.00 -5.40
2 
miRNA  3' uccgUUUUUGGCGUCAAUGAAAa 5'
              ||||||  |||||| ||| 
Target 5' tttgAAAAAC--CAGTTAATTTa 3'
 2406 - 2426 143.00 -7.50
3 
miRNA  3' uccguUUUUGGCGUCAAUGAAAa 5'
               ||| ::|: ||||:||| 
Target 5' tacttAAATTTGT-GTTATTTTt 3'
 2546 - 2567 141.00 -7.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30153368 7 COSMIC
COSN31527296 19 COSMIC
COSN14134856 20 COSMIC
COSN31527294 20 COSMIC
COSN6857449 35 COSMIC
COSN20801318 70 COSMIC
COSN31602978 123 COSMIC
COSN31487121 184 COSMIC
COSN31608581 190 COSMIC
COSN31533114 223 COSMIC
COSN16592986 392 COSMIC
COSN8620771 521 COSMIC
COSN31962448 523 COSMIC
COSN1305405 710 COSMIC
COSN31518499 939 COSMIC
COSN31571602 949 COSMIC
COSN26562464 999 COSMIC
COSN26583786 1012 COSMIC
COSN25288183 1254 COSMIC
COSN8380464 1273 COSMIC
COSN8200854 1304 COSMIC
COSN31520958 1335 COSMIC
COSN28780126 1560 COSMIC
COSN31519564 1562 COSMIC
COSN9399845 1763 COSMIC
COSN9399844 2303 COSMIC
COSN22094011 2435 COSMIC
COSN20101691 2545 COSMIC
COSN27223013 3057 COSMIC
COSN20101689 3216 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1171430210 6 dbSNP
rs1479104325 7 dbSNP
rs750554819 13 dbSNP
rs760835940 15 dbSNP
rs1434759551 16 dbSNP
rs369239412 17 dbSNP
rs922511329 18 dbSNP
rs762131030 19 dbSNP
rs764999142 20 dbSNP
rs1279483675 26 dbSNP
rs371843337 29 dbSNP
rs1195087622 30 dbSNP
rs1258179409 30 dbSNP
rs534290490 32 dbSNP
rs367977295 33 dbSNP
rs373460859 34 dbSNP
rs1018382588 40 dbSNP
rs1267965152 42 dbSNP
rs1478246132 44 dbSNP
rs1381093617 45 dbSNP
rs771641302 46 dbSNP
rs1421503604 53 dbSNP
rs1477541715 57 dbSNP
rs1163980658 69 dbSNP
rs1393500476 70 dbSNP
rs968412287 72 dbSNP
rs981214307 79 dbSNP
rs1323274169 86 dbSNP
rs1020007359 88 dbSNP
rs1241245698 89 dbSNP
rs74327648 92 dbSNP
rs895982151 93 dbSNP
rs1226037609 98 dbSNP
rs1284325633 99 dbSNP
rs1358337649 105 dbSNP
rs1226564832 107 dbSNP
rs554561544 109 dbSNP
rs1488503350 111 dbSNP
rs1218992412 118 dbSNP
rs188766600 120 dbSNP
rs1446697969 122 dbSNP
rs1188308288 125 dbSNP
rs560733194 135 dbSNP
rs564519516 137 dbSNP
rs1002233813 138 dbSNP
rs1163519528 144 dbSNP
rs1381232964 149 dbSNP
rs183076023 154 dbSNP
rs1157288489 156 dbSNP
rs1026107800 161 dbSNP
rs111794209 165 dbSNP
rs1381338528 175 dbSNP
rs1037735631 176 dbSNP
rs1341766082 180 dbSNP
rs1314414667 181 dbSNP
rs1445660332 184 dbSNP
rs72817107 190 dbSNP
rs144343811 193 dbSNP
rs1242039510 199 dbSNP
rs1401354216 206 dbSNP
rs541977098 209 dbSNP
rs1047850938 216 dbSNP
rs901675067 220 dbSNP
rs573234640 228 dbSNP
rs1440774791 229 dbSNP
rs1007623961 235 dbSNP
rs922466722 238 dbSNP
rs1043701667 239 dbSNP
rs1157194983 241 dbSNP
rs1363614058 246 dbSNP
rs190935051 247 dbSNP
rs1361772821 254 dbSNP
rs376971329 256 dbSNP
rs1180993411 263 dbSNP
rs1335573142 264 dbSNP
rs1377526043 274 dbSNP
rs1448960159 275 dbSNP
rs892681693 278 dbSNP
rs1052611410 281 dbSNP
rs1260091173 303 dbSNP
rs1186195710 312 dbSNP
rs942639219 313 dbSNP
rs546117427 320 dbSNP
rs1203090429 324 dbSNP
rs1258837048 325 dbSNP
rs1263000956 329 dbSNP
rs1177334719 333 dbSNP
rs577249204 334 dbSNP
rs1434125028 335 dbSNP
rs1201552656 336 dbSNP
rs781047193 338 dbSNP
rs755575242 347 dbSNP
rs915581142 349 dbSNP
rs984434760 350 dbSNP
rs3776801 352 dbSNP
rs1395767429 359 dbSNP
rs912952195 375 dbSNP
rs1412681726 376 dbSNP
rs758412785 376 dbSNP
rs1223163373 380 dbSNP
rs1339846495 380 dbSNP
rs1320110428 383 dbSNP
rs988556969 384 dbSNP
rs1251243254 388 dbSNP
rs1318885187 391 dbSNP
rs960234589 392 dbSNP
rs1026222157 393 dbSNP
rs562487465 397 dbSNP
rs3776802 399 dbSNP
rs965873538 401 dbSNP
rs970688166 402 dbSNP
rs544520556 404 dbSNP
rs778371792 404 dbSNP
rs1016544231 410 dbSNP
rs149606295 422 dbSNP
rs1006191663 429 dbSNP
rs1458382845 430 dbSNP
rs886472569 433 dbSNP
rs1419542659 440 dbSNP
rs1295024920 447 dbSNP
rs1363506527 450 dbSNP
rs1404501201 452 dbSNP
rs1299033534 455 dbSNP
rs750100068 465 dbSNP
rs1212869841 467 dbSNP
rs1163275967 469 dbSNP
rs138341016 472 dbSNP
rs1247665018 482 dbSNP
rs1243255001 484 dbSNP
rs889180812 489 dbSNP
rs1490292916 490 dbSNP
rs185736515 491 dbSNP
rs376703006 495 dbSNP
rs1041247205 501 dbSNP
rs528701829 502 dbSNP
rs911096599 503 dbSNP
rs1214350251 504 dbSNP
rs73253004 506 dbSNP
rs559859288 507 dbSNP
rs761551819 510 dbSNP
rs1166844309 512 dbSNP
rs1383078580 517 dbSNP
rs1226463729 532 dbSNP
rs912940892 537 dbSNP
rs1362672317 538 dbSNP
rs776438630 556 dbSNP
rs960089596 567 dbSNP
rs1380010620 568 dbSNP
rs1398247263 569 dbSNP
rs1355361416 571 dbSNP
rs928418207 574 dbSNP
rs1241296748 576 dbSNP
rs980654713 596 dbSNP
rs970254647 597 dbSNP
rs1229558327 606 dbSNP
rs1355355734 610 dbSNP
rs1324564187 616 dbSNP
rs1016516557 617 dbSNP
rs1052713493 618 dbSNP
rs1440964846 633 dbSNP
rs768388175 634 dbSNP
rs1396303403 641 dbSNP
rs539730529 643 dbSNP
rs1241187336 645 dbSNP
rs1443990968 648 dbSNP
rs1323458772 651 dbSNP
rs571153322 652 dbSNP
rs1178993807 656 dbSNP
rs1006516088 663 dbSNP
rs1381977845 664 dbSNP
rs551016197 677 dbSNP
rs531101378 679 dbSNP
rs1467646602 688 dbSNP
rs1474727823 690 dbSNP
rs760616653 691 dbSNP
rs1448206803 710 dbSNP
rs1311853637 711 dbSNP
rs1486372057 714 dbSNP
rs1045212894 715 dbSNP
rs1194394439 718 dbSNP
rs1221647996 718 dbSNP
rs997538660 721 dbSNP
rs901898762 732 dbSNP
rs1283110861 733 dbSNP
rs1312471145 735 dbSNP
rs948478424 744 dbSNP
rs1260753128 750 dbSNP
rs75667088 754 dbSNP
rs1007099551 755 dbSNP
rs1239715535 756 dbSNP
rs1468416126 759 dbSNP
rs889652796 766 dbSNP
rs1438544085 774 dbSNP
rs1042953764 776 dbSNP
rs74858537 778 dbSNP
rs930350293 791 dbSNP
rs1405463056 792 dbSNP
rs1466548011 806 dbSNP
rs918905054 810 dbSNP
rs528644471 822 dbSNP
rs1053171075 824 dbSNP
rs971983922 827 dbSNP
rs1275863087 830 dbSNP
rs1237385413 832 dbSNP
rs1367832702 833 dbSNP
rs770987634 837 dbSNP
rs938380166 846 dbSNP
rs1300539787 851 dbSNP
rs559774948 857 dbSNP
rs1322237574 858 dbSNP
rs1435346647 860 dbSNP
rs1354706004 871 dbSNP
rs965960635 872 dbSNP
rs114887040 873 dbSNP
rs911729891 874 dbSNP
rs1275025306 882 dbSNP
rs1331356685 892 dbSNP
rs1408545978 897 dbSNP
rs1203515498 901 dbSNP
rs1247096435 903 dbSNP
rs1490886861 909 dbSNP
rs928335386 912 dbSNP
rs1197548243 916 dbSNP
rs985941181 919 dbSNP
rs979909828 926 dbSNP
rs1172982070 931 dbSNP
rs182970295 934 dbSNP
rs563571405 945 dbSNP
rs777135740 950 dbSNP
rs1409937911 960 dbSNP
rs909402685 962 dbSNP
rs1010979594 963 dbSNP
rs1406337306 972 dbSNP
rs540326863 981 dbSNP
rs985027700 985 dbSNP
rs950915481 986 dbSNP
rs879548385 987 dbSNP
rs1190634775 991 dbSNP
rs1003818619 1004 dbSNP
rs191101915 1007 dbSNP
rs150913161 1015 dbSNP
rs1337319672 1017 dbSNP
rs373137669 1025 dbSNP
rs534408636 1026 dbSNP
rs976447194 1028 dbSNP
rs571846989 1030 dbSNP
rs1290249385 1032 dbSNP
rs966077558 1054 dbSNP
rs906745805 1062 dbSNP
rs1045647993 1069 dbSNP
rs1268428995 1077 dbSNP
rs186717530 1077 dbSNP
rs1240463934 1080 dbSNP
rs573300423 1082 dbSNP
rs1164357795 1084 dbSNP
rs1018100033 1088 dbSNP
rs538220624 1090 dbSNP
rs1163411618 1104 dbSNP
rs889600331 1110 dbSNP
rs1481942634 1113 dbSNP
rs930381437 1115 dbSNP
rs1324181812 1116 dbSNP
rs1273576022 1117 dbSNP
rs545531509 1118 dbSNP
rs1349914073 1123 dbSNP
rs114919765 1124 dbSNP
rs770029446 1126 dbSNP
rs1243468807 1133 dbSNP
rs1290817654 1140 dbSNP
rs1035963062 1142 dbSNP
rs891690912 1143 dbSNP
rs1280923189 1148 dbSNP
rs77367467 1149 dbSNP
rs1188421051 1162 dbSNP
rs576525097 1166 dbSNP
rs1443382159 1172 dbSNP
rs944622816 1173 dbSNP
rs1381338784 1174 dbSNP
rs3984998 1175 dbSNP
rs3984997 1179 dbSNP
rs781708362 1196 dbSNP
rs1159940085 1198 dbSNP
rs548841991 1200 dbSNP
rs911777792 1205 dbSNP
rs758175942 1208 dbSNP
rs948480265 1219 dbSNP
rs1384864743 1223 dbSNP
rs1450399881 1236 dbSNP
rs953262612 1239 dbSNP
rs796340730 1241 dbSNP
rs1241370928 1248 dbSNP
rs755337291 1254 dbSNP
rs1401351941 1265 dbSNP
rs752925256 1276 dbSNP
rs1157060458 1290 dbSNP
rs1265125354 1301 dbSNP
rs1472348216 1301 dbSNP
rs1250839224 1305 dbSNP
rs201013763 1311 dbSNP
rs919467507 1313 dbSNP
rs780693950 1319 dbSNP
rs989578337 1321 dbSNP
rs528579871 1323 dbSNP
rs1421242838 1326 dbSNP
rs1180178518 1329 dbSNP
rs976394109 1331 dbSNP
rs566204005 1333 dbSNP
rs1031014030 1337 dbSNP
rs1176471803 1343 dbSNP
rs1017630444 1345 dbSNP
rs1468115390 1350 dbSNP
rs1003514128 1351 dbSNP
rs1392910728 1351 dbSNP
rs1401031472 1351 dbSNP
rs372974163 1351 dbSNP
rs986168119 1357 dbSNP
rs968077955 1359 dbSNP
rs1285205696 1360 dbSNP
rs1285682282 1362 dbSNP
rs1223050416 1363 dbSNP
rs1306152357 1365 dbSNP
rs1012893448 1366 dbSNP
rs1023931101 1366 dbSNP
rs1358897502 1366 dbSNP
rs1481934911 1366 dbSNP
rs373455006 1366 dbSNP
rs758799177 1366 dbSNP
rs766823962 1366 dbSNP
rs772047714 1366 dbSNP
rs1226197551 1367 dbSNP
rs1328004438 1368 dbSNP
rs1395520528 1369 dbSNP
rs1305177482 1370 dbSNP
rs1405704898 1370 dbSNP
rs552725805 1370 dbSNP
rs1404388707 1380 dbSNP
rs201184590 1380 dbSNP
rs1011326939 1393 dbSNP
rs955907704 1397 dbSNP
rs1031999401 1401 dbSNP
rs1027079839 1403 dbSNP
rs1225905840 1419 dbSNP
rs1309736137 1419 dbSNP
rs1357503006 1420 dbSNP
rs1002815537 1423 dbSNP
rs757893998 1424 dbSNP
rs536508304 1425 dbSNP
rs897539590 1431 dbSNP
rs1044036860 1438 dbSNP
rs1035994202 1442 dbSNP
rs34984849 1442 dbSNP
rs1012604790 1452 dbSNP
rs866293151 1457 dbSNP
rs1380713857 1479 dbSNP
rs1168237225 1491 dbSNP
rs532502326 1494 dbSNP
rs890113868 1499 dbSNP
rs929450114 1506 dbSNP
rs376339394 1516 dbSNP
rs919474940 1517 dbSNP
rs1424295110 1519 dbSNP
rs1289470637 1528 dbSNP
rs1364190298 1531 dbSNP
rs1041011539 1532 dbSNP
rs1380963056 1534 dbSNP
rs117611256 1545 dbSNP
rs1384259838 1553 dbSNP
rs931863858 1557 dbSNP
rs910810621 1562 dbSNP
rs12187973 1568 dbSNP
rs1418822861 1569 dbSNP
rs989274005 1570 dbSNP
rs1221314759 1572 dbSNP
rs1039742643 1577 dbSNP
rs529989076 1578 dbSNP
rs1165432769 1593 dbSNP
rs1260729712 1597 dbSNP
rs915292217 1602 dbSNP
rs1486557604 1604 dbSNP
rs935412914 1609 dbSNP
rs1260926489 1611 dbSNP
rs1445208168 1623 dbSNP
rs1185158350 1624 dbSNP
rs924058562 1632 dbSNP
rs988219377 1633 dbSNP
rs1181226400 1638 dbSNP
rs970778001 1639 dbSNP
rs1451706601 1645 dbSNP
rs1024041699 1653 dbSNP
rs1382968269 1653 dbSNP
rs571443612 1658 dbSNP
rs766635540 1658 dbSNP
rs1455086387 1669 dbSNP
rs560738420 1673 dbSNP
rs76559752 1675 dbSNP
rs1382498339 1691 dbSNP
rs753428967 1692 dbSNP
rs1206230866 1709 dbSNP
rs1464190186 1711 dbSNP
rs1003131729 1725 dbSNP
rs1318402219 1727 dbSNP
rs1273416600 1728 dbSNP
rs556461051 1731 dbSNP
rs994261772 1731 dbSNP
rs971315254 1732 dbSNP
rs1205495804 1738 dbSNP
rs1240970094 1739 dbSNP
rs1443777630 1742 dbSNP
rs1177628993 1744 dbSNP
rs1410414381 1745 dbSNP
rs767099781 1745 dbSNP
rs180835069 1751 dbSNP
rs1235589477 1762 dbSNP
rs1320303015 1763 dbSNP
rs1312372432 1768 dbSNP
rs1009051031 1783 dbSNP
rs1335308810 1788 dbSNP
rs1375180931 1789 dbSNP
rs1406066641 1793 dbSNP
rs1443353584 1794 dbSNP
rs1022889639 1797 dbSNP
rs1300307650 1803 dbSNP
rs1012551654 1806 dbSNP
rs1318675600 1807 dbSNP
rs1221735786 1829 dbSNP
rs1434425791 1833 dbSNP
rs887473325 1835 dbSNP
rs73251202 1836 dbSNP
rs1323630366 1838 dbSNP
rs376013862 1839 dbSNP
rs558199348 1843 dbSNP
rs1328156994 1854 dbSNP
rs1261164390 1856 dbSNP
rs931920810 1858 dbSNP
rs1286892161 1866 dbSNP
rs372057405 1867 dbSNP
rs1479755174 1869 dbSNP
rs1040519395 1875 dbSNP
rs1163762440 1876 dbSNP
rs1430323105 1880 dbSNP
rs544714934 1899 dbSNP
rs1174429720 1903 dbSNP
rs1429158882 1908 dbSNP
rs1411043726 1911 dbSNP
rs1172923919 1912 dbSNP
rs1353135348 1913 dbSNP
rs910765925 1921 dbSNP
rs1307023134 1922 dbSNP
rs1345816686 1923 dbSNP
rs1406225297 1925 dbSNP
rs1280859724 1927 dbSNP
rs1344169988 1928 dbSNP
rs1215112613 1932 dbSNP
rs575946515 1940 dbSNP
rs1305560563 1943 dbSNP
rs538174588 1958 dbSNP
rs1204245282 1960 dbSNP
rs1269837254 1962 dbSNP
rs1490912772 1967 dbSNP
rs866353814 1971 dbSNP
rs1448330805 1974 dbSNP
rs915282298 1981 dbSNP
rs1475992942 1989 dbSNP
rs77143128 1994 dbSNP
rs916601442 1998 dbSNP
rs1409737432 2002 dbSNP
rs1215181168 2005 dbSNP
rs991186300 2011 dbSNP
rs1426199812 2013 dbSNP
rs1487277247 2019 dbSNP
rs1265250079 2025 dbSNP
rs1205634047 2030 dbSNP
rs1227355200 2076 dbSNP
rs956783661 2080 dbSNP
rs952972940 2082 dbSNP
rs1361794204 2083 dbSNP
rs1027227037 2086 dbSNP
rs1296043794 2098 dbSNP
rs928056885 2110 dbSNP
rs138832944 2111 dbSNP
rs189262987 2112 dbSNP
rs1195492376 2127 dbSNP
rs1449436565 2129 dbSNP
rs1184550353 2141 dbSNP
rs971644435 2148 dbSNP
rs1446025401 2150 dbSNP
rs1161294009 2152 dbSNP
rs1389657034 2155 dbSNP
rs1305639287 2159 dbSNP
rs1385346136 2162 dbSNP
rs1390229081 2163 dbSNP
rs1292779904 2172 dbSNP
rs1319758503 2173 dbSNP
rs1343320215 2175 dbSNP
rs1022878328 2176 dbSNP
rs1462298517 2176 dbSNP
rs760463403 2178 dbSNP
rs1020173914 2181 dbSNP
rs77857886 2181 dbSNP
rs1008667170 2182 dbSNP
rs1395190568 2185 dbSNP
rs1351735820 2186 dbSNP
rs1206940590 2190 dbSNP
rs563609143 2192 dbSNP
rs1282285312 2199 dbSNP
rs1200311726 2201 dbSNP
rs1204881845 2208 dbSNP
rs773645686 2209 dbSNP
rs1431142117 2210 dbSNP
rs775467577 2218 dbSNP
rs1178208608 2222 dbSNP
rs767878165 2226 dbSNP
rs1481817155 2230 dbSNP
rs1187339941 2236 dbSNP
rs951676716 2237 dbSNP
rs1205081121 2241 dbSNP
rs543834689 2253 dbSNP
rs995879004 2254 dbSNP
rs993585261 2257 dbSNP
rs897551808 2260 dbSNP
rs1408282751 2264 dbSNP
rs1333309156 2272 dbSNP
rs999431327 2277 dbSNP
rs1019113171 2280 dbSNP
rs1241478796 2281 dbSNP
rs1277796263 2282 dbSNP
rs902358925 2283 dbSNP
rs1224280589 2286 dbSNP
rs566291308 2296 dbSNP
rs1307957939 2299 dbSNP
rs1009033917 2302 dbSNP
rs889317014 2306 dbSNP
rs1050634491 2310 dbSNP
rs1437987815 2313 dbSNP
rs1183539990 2318 dbSNP
rs1249249777 2331 dbSNP
rs1352099322 2338 dbSNP
rs949497232 2340 dbSNP
rs1305908790 2348 dbSNP
rs946998996 2351 dbSNP
rs1176586340 2352 dbSNP
rs1431312788 2383 dbSNP
rs1464510629 2392 dbSNP
rs181818416 2397 dbSNP
rs189545884 2408 dbSNP
rs1396966781 2414 dbSNP
rs762985396 2416 dbSNP
rs1055206650 2417 dbSNP
rs1350168727 2421 dbSNP
rs1405594960 2429 dbSNP
rs931352253 2431 dbSNP
rs1321968749 2435 dbSNP
rs184450041 2443 dbSNP
rs1233173422 2444 dbSNP
rs1376775222 2476 dbSNP
rs1159396978 2477 dbSNP
rs1473331189 2488 dbSNP
rs1250109253 2490 dbSNP
rs1341904791 2497 dbSNP
rs1194496534 2505 dbSNP
rs1272013799 2506 dbSNP
rs1181856823 2522 dbSNP
rs1199459556 2525 dbSNP
rs1431315358 2526 dbSNP
rs1198087235 2531 dbSNP
rs570027446 2534 dbSNP
rs549946214 2537 dbSNP
rs935331408 2541 dbSNP
rs147848857 2548 dbSNP
rs746647172 2548 dbSNP
rs1463322798 2550 dbSNP
rs1162855801 2563 dbSNP
rs972974063 2563 dbSNP
rs1370140403 2566 dbSNP
rs1425555801 2578 dbSNP
rs961584818 2585 dbSNP
rs928034693 2591 dbSNP
rs773374439 2595 dbSNP
rs1328755934 2600 dbSNP
rs529984449 2602 dbSNP
rs1225660837 2604 dbSNP
rs193188232 2608 dbSNP
rs991393642 2615 dbSNP
rs1340959554 2619 dbSNP
rs1241481907 2628 dbSNP
rs1293242766 2628 dbSNP
rs1327277346 2629 dbSNP
rs951917101 2631 dbSNP
rs1208788596 2637 dbSNP
rs1262323402 2637 dbSNP
rs549043923 2641 dbSNP
rs1031981048 2642 dbSNP
rs1336079160 2645 dbSNP
rs1394160701 2651 dbSNP
rs1400879124 2652 dbSNP
rs1165696653 2653 dbSNP
rs144981737 2656 dbSNP
rs902387685 2670 dbSNP
rs1458513669 2671 dbSNP
rs962023007 2673 dbSNP
rs1158946060 2677 dbSNP
rs1297253351 2677 dbSNP
rs1475730309 2688 dbSNP
rs1383995315 2689 dbSNP
rs1248715313 2694 dbSNP
rs1013871353 2706 dbSNP
rs1186048480 2712 dbSNP
rs1018689587 2715 dbSNP
rs1055641320 2721 dbSNP
rs1486771685 2725 dbSNP
rs1206745620 2726 dbSNP
rs1009103089 2738 dbSNP
rs931383426 2745 dbSNP
rs1461591572 2747 dbSNP
rs1210645705 2751 dbSNP
rs1411857742 2753 dbSNP
rs919947328 2754 dbSNP
rs889264745 2759 dbSNP
rs1029087601 2761 dbSNP
rs748396145 2764 dbSNP
rs1407550697 2769 dbSNP
rs894020983 2773 dbSNP
rs954382617 2775 dbSNP
rs1376451814 2782 dbSNP
rs1053122754 2783 dbSNP
rs189533278 2785 dbSNP
rs1391508270 2786 dbSNP
rs1193345933 2788 dbSNP
rs1330594928 2788 dbSNP
rs1335252958 2794 dbSNP
rs1285670832 2800 dbSNP
rs866517275 2805 dbSNP
rs1267399848 2807 dbSNP
rs1339758199 2808 dbSNP
rs1205286713 2816 dbSNP
rs1235545931 2818 dbSNP
rs564743433 2819 dbSNP
rs1436609486 2827 dbSNP
rs185077528 2828 dbSNP
rs576097742 2830 dbSNP
rs1471645385 2834 dbSNP
rs977716742 2840 dbSNP
rs1430575458 2847 dbSNP
rs1461576612 2853 dbSNP
rs966394923 2854 dbSNP
rs948148879 2858 dbSNP
rs556109913 2861 dbSNP
rs916682964 2862 dbSNP
rs1013484148 2867 dbSNP
rs1161771350 2870 dbSNP
rs895000342 2871 dbSNP
rs1033450793 2874 dbSNP
rs542284539 2879 dbSNP
rs141299251 2882 dbSNP
rs1351994531 2903 dbSNP
rs1190672978 2912 dbSNP
rs1407432589 2915 dbSNP
rs930467569 2927 dbSNP
rs1287185119 2936 dbSNP
rs566403078 2938 dbSNP
rs920477412 2943 dbSNP
rs756842783 2956 dbSNP
rs1276170209 2959 dbSNP
rs1311374890 2961 dbSNP
rs1205037415 2966 dbSNP
rs898551794 2968 dbSNP
rs34179881 2976 dbSNP
rs1447716932 3007 dbSNP
rs972425750 3008 dbSNP
rs1481674272 3010 dbSNP
rs940057500 3010 dbSNP
rs148102497 3011 dbSNP
rs1425170325 3018 dbSNP
rs535347898 3026 dbSNP
rs1203741758 3030 dbSNP
rs1410852249 3030 dbSNP
rs1214561565 3033 dbSNP
rs1371971554 3041 dbSNP
rs911572511 3044 dbSNP
rs987166963 3046 dbSNP
rs1207824403 3054 dbSNP
rs1355609826 3058 dbSNP
rs921449181 3060 dbSNP
rs990276281 3075 dbSNP
rs1299568729 3080 dbSNP
rs572623254 3088 dbSNP
rs192716165 3097 dbSNP
rs143139481 3099 dbSNP
rs1292856014 3101 dbSNP
rs533330727 3102 dbSNP
rs1219520614 3103 dbSNP
rs1246617415 3107 dbSNP
rs1476040994 3108 dbSNP
rs1332441962 3114 dbSNP
rs1010994945 3119 dbSNP
rs958231987 3136 dbSNP
rs759241388 3138 dbSNP
rs1365880800 3140 dbSNP
rs966801378 3145 dbSNP
rs149078223 3148 dbSNP
rs1397903053 3150 dbSNP
rs1322217447 3175 dbSNP
rs1362758328 3179 dbSNP
rs550272733 3182 dbSNP
rs1000207561 3184 dbSNP
rs536221183 3185 dbSNP
rs1171052852 3186 dbSNP
rs906519086 3189 dbSNP
rs567335036 3193 dbSNP
rs1428311052 3195 dbSNP
rs1289284891 3198 dbSNP
rs1389665297 3201 dbSNP
rs1046802134 3203 dbSNP
rs1194287496 3209 dbSNP
rs1479158879 3213 dbSNP
rs1245174856 3215 dbSNP
rs1246786708 3220 dbSNP
rs992497497 3221 dbSNP
rs1184633728 3223 dbSNP
rs1368659493 3224 dbSNP
rs78716330 3229 dbSNP
rs11330098 3230 dbSNP
rs1160905692 3230 dbSNP
rs1161282521 3230 dbSNP
rs1386415747 3230 dbSNP
rs201684493 3230 dbSNP
rs751301224 3230 dbSNP
rs959280898 3230 dbSNP
rs1337175600 3231 dbSNP
rs1434064268 3231 dbSNP
rs1450809623 3232 dbSNP
rs944100790 3236 dbSNP
rs1274996413 3237 dbSNP
rs547245272 3238 dbSNP
rs187724755 3242 dbSNP
rs1033483168 3257 dbSNP
rs562777532 3259 dbSNP
rs1204652867 3261 dbSNP
rs1339911254 3263 dbSNP
rs1273343779 3265 dbSNP
rs1219274155 3270 dbSNP
rs995333917 3273 dbSNP
rs1236611208 3275 dbSNP
rs1012274596 3279 dbSNP
rs1160811403 3280 dbSNP
rs895194660 3287 dbSNP
rs1435233737 3294 dbSNP
rs3727 3295 dbSNP
rs930456148 3312 dbSNP
rs1015657051 3313 dbSNP
rs1004290046 3321 dbSNP
rs891135316 3326 dbSNP
rs1333748401 3330 dbSNP
rs147020932 3338 dbSNP
rs183675051 3339 dbSNP
rs1036264384 3341 dbSNP
rs940633624 3343 dbSNP
rs911831498 3346 dbSNP
rs932897858 3348 dbSNP
rs987503941 3349 dbSNP
rs953056294 3350 dbSNP
rs1258070324 3354 dbSNP
rs1343312550 3355 dbSNP
rs1200286349 3357 dbSNP
rs562414211 3358 dbSNP
rs1483193485 3361 dbSNP
rs542721752 3363 dbSNP
rs573637951 3365 dbSNP
rs746308889 3374 dbSNP
rs1183664803 3378 dbSNP
rs1248993043 3379 dbSNP
rs989227322 3380 dbSNP
rs1199474498 3386 dbSNP
rs1379365988 3393 dbSNP
rs1184050741 3398 dbSNP
rs1476900691 3399 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_020177 | 3UTR | AUUACUUUGAUUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000274457.3 | 3UTR | UCAAGAUACUUUAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000274457.3 | 3UTR | UCAAGAUACUUUAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
184 hsa-miR-548w Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057125 DDIT4 DNA damage inducible transcript 4 2 4
MIRT063369 ETNK1 ethanolamine kinase 1 2 2
MIRT072492 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT082186 ACTN4 actinin alpha 4 2 6
MIRT083033 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT085188 SLC5A3 solute carrier family 5 member 3 2 4
MIRT088905 FOXN2 forkhead box N2 2 4
MIRT089494 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT092039 ABHD5 abhydrolase domain containing 5 2 2
MIRT094685 FEM1C fem-1 homolog C 2 2
MIRT095393 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT096501 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT101296 FAM135A family with sequence similarity 135 member A 2 2
MIRT103356 CBX3 chromobox 3 2 2
MIRT103872 FOXK1 forkhead box K1 2 2
MIRT104334 CLDN12 claudin 12 2 2
MIRT104501 PEG10 paternally expressed 10 2 6
MIRT111795 MPZL1 myelin protein zero like 1 2 2
MIRT177238 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT177273 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT177626 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 6
MIRT178042 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT179102 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT179587 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 6
MIRT195299 LEPROT leptin receptor overlapping transcript 2 2
MIRT203143 BACH1 BTB domain and CNC homolog 1 2 2
MIRT208430 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT214578 SMAD5 SMAD family member 5 2 4
MIRT216103 IL6ST interleukin 6 signal transducer 2 2
MIRT216355 CCNB1 cyclin B1 2 4
MIRT220050 MDFIC MyoD family inhibitor domain containing 2 2
MIRT226729 ANP32B acidic nuclear phosphoprotein 32 family member B 2 4
MIRT227698 TBC1D13 TBC1 domain family member 13 2 2
MIRT230071 SH3BGRL SH3 domain binding glutamate rich protein like 2 2
MIRT248637 HMGN2 high mobility group nucleosomal binding domain 2 2 4
MIRT254790 XRCC6 X-ray repair cross complementing 6 2 6
MIRT264376 YAP1 Yes associated protein 1 2 2
MIRT266972 LRRC55 leucine rich repeat containing 55 2 4
MIRT273949 SPRYD4 SPRY domain containing 4 2 2
MIRT281802 MAP2K1 mitogen-activated protein kinase kinase 1 2 2
MIRT293252 DR1 down-regulator of transcription 1 2 2
MIRT297097 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT308170 PDE12 phosphodiesterase 12 2 2
MIRT309013 USP53 ubiquitin specific peptidase 53 2 2
MIRT311470 PRRC1 proline rich coiled-coil 1 2 2
MIRT312586 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT328130 ZNF711 zinc finger protein 711 2 2
MIRT329313 FAM53C family with sequence similarity 53 member C 2 2
MIRT334642 NEK7 NIMA related kinase 7 2 2
MIRT340673 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT378858 ITGB8 integrin subunit beta 8 2 2
MIRT395789 SPCS3 signal peptidase complex subunit 3 2 2
MIRT405639 WBP4 WW domain binding protein 4 2 4
MIRT408287 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT442097 ZNRF2 zinc and ring finger 2 2 8
MIRT442840 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT443116 VLDLR very low density lipoprotein receptor 2 2
MIRT443147 ZDHHC21 zinc finger DHHC-type containing 21 2 2
MIRT443298 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 2 2
MIRT445080 ZNF207 zinc finger protein 207 2 2
MIRT445384 PTCHD1 patched domain containing 1 2 4
MIRT447070 MCC mutated in colorectal cancers 2 2
MIRT447300 ZNF562 zinc finger protein 562 2 2
MIRT447512 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT449511 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449902 C11orf34 placenta expressed transcript 1 1 2
MIRT450551 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450719 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT454923 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455892 KIF2C kinesin family member 2C 2 2
MIRT463732 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT471182 PHB2 prohibitin 2 2 2
MIRT472764 MTMR6 myotubularin related protein 6 2 8
MIRT474457 KLHL11 kelch like family member 11 2 8
MIRT475985 GTPBP2 GTP binding protein 2 2 2
MIRT482277 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT485858 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT486192 ERH ERH, mRNA splicing and mitosis factor 2 4
MIRT488609 FAM3C family with sequence similarity 3 member C 2 6
MIRT489984 DDB1 damage specific DNA binding protein 1 2 2
MIRT493476 IPMK inositol polyphosphate multikinase 2 2
MIRT494280 CEP120 centrosomal protein 120 2 2
MIRT497992 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498473 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT498559 TMEM30B transmembrane protein 30B 2 2
MIRT499867 SVOP SV2 related protein 2 10
MIRT500220 INHBA inhibin beta A subunit 2 10
MIRT500694 TRIM37 tripartite motif containing 37 2 2
MIRT500988 SPPL2A signal peptide peptidase like 2A 2 4
MIRT501023 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502736 CLIP1 CAP-Gly domain containing linker protein 1 2 8
MIRT502798 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502887 CDK4 cyclin dependent kinase 4 2 8
MIRT503483 ZNF154 zinc finger protein 154 2 6
MIRT503717 GRM5 glutamate metabotropic receptor 5 2 2
MIRT505137 YOD1 YOD1 deubiquitinase 2 2
MIRT505802 RSBN1 round spermatid basic protein 1 2 8
MIRT505841 POLR1B RNA polymerase I subunit B 2 4
MIRT509284 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT516829 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT520519 TRA2B transformer 2 beta homolog 2 2
MIRT520723 TM9SF3 transmembrane 9 superfamily member 3 2 6
MIRT525403 SHISA9 shisa family member 9 2 4
MIRT525867 ARL13B ADP ribosylation factor like GTPase 13B 2 2
MIRT526013 RBM4B RNA binding motif protein 4B 2 2
MIRT526084 TMEM41B transmembrane protein 41B 2 2
MIRT527931 FRY FRY microtubule binding protein 2 2
MIRT528818 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531062 SLC9A4 solute carrier family 9 member A4 2 4
MIRT535495 PANX1 pannexin 1 2 2
MIRT536682 IKZF5 IKAROS family zinc finger 5 2 2
MIRT536835 HMBOX1 homeobox containing 1 2 2
MIRT537202 GDE1 glycerophosphodiester phosphodiesterase 1 2 4
MIRT537834 EFNA5 ephrin A5 2 2
MIRT538345 CSE1L chromosome segregation 1 like 2 4
MIRT541242 GPC4 glypican 4 2 2
MIRT543235 PEX7 peroxisomal biogenesis factor 7 2 2
MIRT543450 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543711 XKR9 XK related 9 2 2
MIRT543907 ESYT1 extended synaptotagmin 1 2 2
MIRT543999 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544070 METTL8 methyltransferase like 8 2 2
MIRT544187 ANGPTL3 angiopoietin like 3 2 2
MIRT544808 ACSM2B acyl-CoA synthetase medium chain family member 2B 2 2
MIRT545046 PRELID1 PRELI domain containing 1 2 2
MIRT545214 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT545289 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545550 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT546497 SIK1 salt inducible kinase 1 2 2
MIRT546914 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT547675 KPNA1 karyopherin subunit alpha 1 2 4
MIRT547770 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT548687 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT548901 CHEK2 checkpoint kinase 2 2 4
MIRT549957 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550489 TMEM241 transmembrane protein 241 2 2
MIRT551049 MKLN1 muskelin 1 2 2
MIRT552811 XIAP X-linked inhibitor of apoptosis 2 4
MIRT553145 UBE2H ubiquitin conjugating enzyme E2 H 2 2
MIRT553830 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554258 SIX4 SIX homeobox 4 2 2
MIRT555781 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT556318 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT556499 LIPA lipase A, lysosomal acid type 2 2
MIRT556693 KLHL28 kelch like family member 28 2 2
MIRT556752 KLF7 Kruppel like factor 7 2 2
MIRT556990 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557146 HOXA13 homeobox A13 2 2
MIRT557487 GPR27 G protein-coupled receptor 27 2 4
MIRT558102 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) 2 2
MIRT559344 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT560335 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT561299 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT561883 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT561927 MFSD9 major facilitator superfamily domain containing 9 2 2
MIRT562935 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563291 BBS10 Bardet-Biedl syndrome 10 2 2
MIRT563405 KIF3A kinesin family member 3A 2 2
MIRT563562 KIAA1586 KIAA1586 2 2
MIRT565876 NHS NHS actin remodeling regulator 2 2
MIRT566081 RCC2 regulator of chromosome condensation 2 2 2
MIRT566396 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT567259 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 2
MIRT571468 CCDC80 coiled-coil domain containing 80 2 2
MIRT572939 VDAC2 voltage dependent anion channel 2 2 2
MIRT573628 ZNF724P zinc finger protein 724 2 2
MIRT573717 KHSRP KH-type splicing regulatory protein 2 2
MIRT609088 SMIM15 small integral membrane protein 15 2 6
MIRT617936 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT618379 PRKG2 protein kinase, cGMP-dependent, type II 2 2
MIRT619627 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 2
MIRT623455 KDM5A lysine demethylase 5A 2 2
MIRT629145 CTCFL CCCTC-binding factor like 2 2
MIRT638521 LYRM2 LYR motif containing 2 2 2
MIRT649483 CLDN16 claudin 16 2 2
MIRT683148 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT691660 SLC43A3 solute carrier family 43 member 3 2 2
MIRT693201 MKI67 marker of proliferation Ki-67 2 2
MIRT695334 AQP3 aquaporin 3 (Gill blood group) 2 2
MIRT701023 PCGF5 polycomb group ring finger 5 2 2
MIRT708753 RYBP RING1 and YY1 binding protein 2 2
MIRT717558 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT719286 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT725172 SDAD1 SDA1 domain containing 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548w Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548w Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-miR-548w Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548w Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548w Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548w Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548w Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)
hsa-miR-548w Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-548w Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-548w Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-548w Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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