miRTarBase - #MIRT095503


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pre-miRNA Information
pre-miRNA hsa-mir-2681   
Genomic Coordinates chr13: 101967642 - 101967746
Description Homo sapiens miR-2681 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2681-5p
Sequence 22| GUUUUACCACCUCCAGGAGACU |43
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 6 13 - 101967720 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1263364397 4 dbSNP
rs1184634146 7 dbSNP
rs1464264801 10 dbSNP
rs1173765682 11 dbSNP
rs1263470724 12 dbSNP
rs906180025 15 dbSNP
rs935390707 20 dbSNP
rs1045157564 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PURA   
Synonyms MRD31, PUR-ALPHA, PUR1, PURALPHA
Description purine rich element binding protein A
Transcript NM_005859   
Expression
Putative miRNA Targets on PURA
3'UTR of PURA
(miRNA target sites are highlighted)		 
>PURA|NM_005859|3'UTR
   1 TCAAACTGAATGAAACCCCCACACACACACACATGCATACACACACACACACAGCCACACACACAGAAAATATACTGTAA
  81 AGAAAGAGAGAAAATAAAAAGTTAAAAAGTTAAAAAAAAAAAAAAACCTGTTAACTCCAAGGGAGCACCACCCACAGAAC
 161 CTCCACCAACTGACAGTTTCTCTTCTTGACTTGCCACCCATCGCTGGATGTTGTCCACTTTATCCACCATATAAAACAGT
 241 AAGCAGCTGCTAAAAACAAAAAAAATACAAAAAGTAATAACATTATATGAACTGTGTTTCCTACTTGATTAAAAAATATA
 321 AAGAACTGAGTGTTTATTTCCCTAATTAACCAAGAACTTTTGTACACGTTTAAGCTATTATTATTAAAAAGTGTTTGCAA
 401 AATGGTCAAGATTATAATATTGCTGAATTATATAAAAGTCCTTTTCATGTTGAGCTAACATTTGACTTTAGCACAAAAAA
 481 GAGATATTTTAGAACACGTAAAATAATATTTTTAGTTTTTCTCATTTTGTTACCAAATTTCAAACCTTACATGGAGGTTA
 561 TTATAGTATATTTGACACCCTATATACCTGTGATTAGAGATGTGTATATATATGAGGGCTAGGCATGCTGTGTGTCTGAG
 641 CTTTGTCTAAATGTTATGCAGAAGTTTGTAGAGTTAAAGGTACGTAGGTTTAATTCATGCAAGGTAAACAATAAGTGCTC
 721 TCTTTTATACAATATGCATTGCATCTGGACCTTAAACTTATAAAAATGGTCAGTGAAACTTCTGTGAACATGAAGAAATT
 801 ATTAAAAAAGGCATTTAAATGAAATTTGCTAAGTTGTGATTTTTATGGTTGGAACCAAAGTTATTCAAATAGTAAAAGGA
 881 AAAAGAAAGAAAAAGGAGATCTCCCATAATATTTTTCTGCATCTGTTTGCTTTGACTGAGTAGGCGTTTTGTCATTATTG
 961 TGTATATGAGATGTACTTGTATCGTTCATAATATATTTTTTTTATTATGTGTAGAAAGATTTTAAAAAACTAACGTGCAG
1041 CAATTTCCAGTGAACCTGTACTTGGACATCAGGTAGTGAGTCTATTTGTGGTCACTAGCACTGTCTCCTAAACTTGTAAG
1121 AGGTCTGAAGCTATTCTTTGATTTTTGCTAGTGCTATTAACTTATGTAGACCTGTTAAAAAGCAGAGCAACACAATTATA
1201 GTTATCCTACTGAGCCATGGATTCTGAGTTTTGTTTTAAAAGTGAAAGCCAAGTTGGTGTATGTAAAGGATTTCCATGTA
1281 GCTGTGGTGCTAGTTATTACTGGCTACATTATATGCTAAGTGTATTTGTGTTCCCCAAGTGTACAAGCCTTCTATCAAAA
1361 GTATGTTCTATAACTCATATATTCAAGGTGTAGGGTATGAAAATGCAAAGTTTAGGAGAGCACTTTACCAAGCTGGTGTC
1441 CTCCAAACTGAAATTGTTTGTAACGATAGTCTTTTACAGGTTTTCCTTTAAAGATGTTTGTGTGCTTTTAATTGACAACT
1521 AACTTCTTGCTGCTGTATAGTAAAATATTAATATATTTTTATCATTAAACTGCTGCATGACTATCATCTTTGAGTGAAGA
1601 GAAAATGTTATAAAAAAGATGCCTTAAACAGTACATTTTGGTTTGGAATTCTGTAGAAAGTATTTTGGTAAAAAAAAAAA
1681 AAAAAAAAAAGGGTCTTGTCTGACAGAGAGTTCTGGGGATGGAATTGTTTCTTGGCAAATCCAGCCATATAGATCTAACT
1761 GCTGTATGTATAAGACACCACCTGTAGGAGCGGGAAGGTATCAGTGCTTCTTATATTGTAAAGCATTGGCCTAGGAAGGC
1841 AAACAGTTGTCTTTTTGAAGGATTTTTTTCTGCTGGTCCTTTGGGTTTTGATTTGATATTTTTATGCTCCCTGGTTGAGT
1921 GTGTTGTCTTCGTTTTTGAGATCTACTGTATGTGTTGAATAACAAGCTATTTTCATTGTACTGTGCATTTTCCCATTAAA
2001 TTGTTTGCTTTTAATATTCAATGTTAAATATGAGGTGACCGTACAGTAGTTAGGAGTTTCTTTACTTACAAAATCACTGG
2081 AAATGATTAAATTGCTTTTCCCCCTCCCCAGAGGTGCATTTTTCTTATTTCCATATAGTAAAGTTGAGCTTTTACAGTGC
2161 ATAATGTGACATTTGGAATGCTTATCAACTGCATGTAAACATTAATAACCTGCACTTTTTTGTCTTAAGGTTTGTTGAGC
2241 TGTTTTGTTCACTGTACTTTAACTGTGATATGGAAAAGACTGCATTCTCTGTGCTGTTACTAATTAGGAAAGAGAATTGC
2321 TTTGATTTTGTCTCTTGTTTACTATAGCTTCTTAAAGTTAAGCCTTGTACTACAGGTTGTTGGAGTACTCCTAGATCACT
2401 GTTTCATAGTAGCCAGCAATAAGTAGTGCAAGTCAACAAAAACACAGCAAACTTAGGCAAAGTGTCCTTTCTTTGAGATG
2481 CGAGTTCTTTCATGAGGTTTTCTTTAGGGCCAGAGTTACCTAAAGTGAAGCCTTTCTTATCTATAGACTTCAGATTCTGC
2561 TTGGAATCCCACCGGCTCAAGAAGCACATGTATTGTGCAATTAATTGTCTTTACACTAAAACAGTTTAATACAATCTAAC
2641 TACGATTTTGAAACCAGTGTCTGATTTATGGTCAGTGGGTTTAAAAAGAAATCCACATGCAGATCTTTTAAGACTTAAAA
2721 AGTGATCATAGAAAAGACTAAGTGACTGTAAAGATGCTCTTTTTTTAAGCATCTCACTTTACCTCCCCAAGCACCCTCCC
2801 AAACCTTGTCTTCCCTCTTCTGTTGCATCCTTTCCCTACCCTTCCCTCCCAGGTGCTCGGTACTTTACCTAGTTTCTATA
2881 TATCAGTGTTTTATGTTGGAATTTTTCCTTGTTTTTATTTTACTAGTTGGTAAACCCTGTTTATGCTGAAACAAATAAGG
2961 AAATGGTATATTTGACCATATGTGTTATTCATAGAAGACAGTATGATCAAATGTGCCAAAAACAAGCAAACAAAACTTAA
3041 TTCCTGAGAAGTATGCCTTATTTTTATTGATCTGCTTTGTCTTACAATTAAGGTCCAAGAGCTTGGTTAAACTGTATTAT
3121 TTGCCTAAGTATAAAAGAAAACTTGAACTGCATTGCAATATTGACGTTCTTTAAAATGAGAGACACTGTCAAGTAATTTA
3201 ATCCAGAGATCAGCCACCAGATTTGAAATGCTTATGTATGTGTGTGTGTTTGGAGTTGTTTTTTTCTTTTAAATCACCAA
3281 ATTTTTTTTAAGCTACTTTTTATTTGTGCCTCCTATTTATCATGCTGATGTTAGAAGCAGCAGTCATCCAGCCACAGAGG
3361 GAGCTAAAGTTAACTAACCAGAACTGTAGAAATCATTATACATGCCTTTGACAACAAAGGAAGTTCATAAGAAAAGCCAT
3441 GTCGGCTTTTCCTCTACTAGATACAGATTGGAGGTAGATGAATATTTGCCAAATGGAAAAAAAGACAATGCTAGTCAGAA
3521 AAGACAAACTGTTTTCCAGCTTCTCAAAAAGCCATGGAGAGTAGAAACCAAAACCAACAGGGAAATAAAAAACCTTGAAA
3601 GTCTCACTTTCTAGTTGTCCCATGCAGGGGTTGAAATTTGATTCCAAGCGGAAAGTATATTATGTTTTTTCAGGCCTTCA
3681 CATCTAGAGAGATGGATAACTTCCAATTTGATTTTTCAGGTAATAGAGAAAGCTGCTAGTAATTTTAACCCCTGCCTAAA
3761 GAAGACATATACTTCATTTGGGAGCAAATACTTATTGCCTTGAAAAGTAGCACTGTAATAGCCTATGATAATTAGTTGTA
3841 GAATAACCTTTATCCCTTTCAAACTATGCAAATTATTAAATAAGTGTAAATTAGGATTCAATTAAAGATAGTTGATTATA
3921 TTGCAATCAGATGGCATTCACAAACTTAACTGGAGCATATACAAATATATTAGTCTAAGTTTTGTATGCTAACAGAAAGA
4001 TATAATTTAGCTACCTATTCTAAAAATGGTGAATATTATTAATATTGTATAATAGGAGTGGGAAGACTGCCTCCTTTTTT
4081 GAAGAGAGAGATTAAGGATTTTTATAATTGTTTTTCATCAAATTTTAATATTTTTGTCAAATTTTTAGGTATTTAATTTG
4161 TAAAACAGTTTGCTTTGTACTGGCATACAGAAAATAGGGTATTGATTTTAAACTTTTTGAAGCCAAGTGATCAAGTACAT
4241 TTGTAATAAAAGTCAATGGATCTATAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucagAGGACCUC---C-----ACCAUUUUg 5'
              |:||| ||   |     |||||||| 
Target 5' ggaaTTCTGTAGAAAGTATTTTGGTAAAAa 3'
 1645 - 1674 150.00 -9.40
2 
miRNA  3' ucAGAGGACCUCCACCAUUUug 5'
            |:| ||  || |||||||  
Target 5' atTTTACT--AGTTGGTAAAcc 3'
 2917 - 2936 140.00 -7.70
3 
miRNA  3' ucaGAGGACCUCCACCAUUUug 5'
             :|| || |   ||||||  
Target 5' taaTTCATGCA--AGGTAAAca 3'
 691 - 710 127.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN16161736 5 COSMIC
COSN5069796 7 COSMIC
COSN15626037 20 COSMIC
COSN30126436 20 COSMIC
COSN23012833 34 COSMIC
COSN30170429 53 COSMIC
COSN17153512 55 COSMIC
COSN30114215 91 COSMIC
COSN32061233 127 COSMIC
COSN30526904 207 COSMIC
COSN30531799 236 COSMIC
COSN23012834 266 COSMIC
COSN17037959 288 COSMIC
COSN30135011 326 COSMIC
COSN30114411 355 COSMIC
COSN30120073 376 COSMIC
COSN30142446 383 COSMIC
COSN15626038 442 COSMIC
COSN30140736 442 COSMIC
COSN30125231 457 COSMIC
COSN30159382 624 COSMIC
COSN30126105 684 COSMIC
COSN29461459 740 COSMIC
COSN30174228 749 COSMIC
COSN29462313 759 COSMIC
COSN30120273 805 COSMIC
COSN30512615 833 COSMIC
COSN31485559 842 COSMIC
COSN30137650 1035 COSMIC
COSN30531687 1115 COSMIC
COSN31571626 1137 COSMIC
COSN30511177 1265 COSMIC
COSN15626039 1357 COSMIC
COSN20101897 1442 COSMIC
COSN26958422 1449 COSMIC
COSN30173993 1466 COSMIC
COSN5069798 2303 COSMIC
COSN26562470 2384 COSMIC
COSN8491939 2457 COSMIC
COSN9408241 2533 COSMIC
COSN24301180 2692 COSMIC
COSN8204121 2750 COSMIC
COSN7877351 2759 COSMIC
COSN26958423 2771 COSMIC
COSN27572241 2805 COSMIC
COSN15626040 2908 COSMIC
COSN22282956 3390 COSMIC
COSN15626041 3534 COSMIC
COSN6865182 3586 COSMIC
COSN15626042 3700 COSMIC
COSN29631249 3707 COSMIC
COSN5590498 3714 COSMIC
COSN29396221 4313 COSMIC
COSN9927027 4462 COSMIC
COSN20139556 4463 COSMIC
COSN9408243 5474 COSMIC
COSN4843855 5531 COSMIC
COSN26649674 5600 COSMIC
COSN26553114 5631 COSMIC
COSN20849985 5952 COSMIC
COSN21576577 5974 COSMIC
COSN26644006 6383 COSMIC
COSN28674756 6413 COSMIC
COSN7877352 6563 COSMIC
COSN28685002 6633 COSMIC
COSN8491940 6633 COSMIC
COSN27092643 6710 COSMIC
COSN28686172 6747 COSMIC
COSN8491941 6747 COSMIC
COSN17546076 7116 COSMIC
COSN27869374 7153 COSMIC
COSN19432218 7195 COSMIC
COSN2072950 7569 COSMIC
COSN30070785 7647 COSMIC
COSN2072951 7880 COSMIC
COSN26291776 8022 COSMIC
COSN26958424 8119 COSMIC
COSN26640775 8218 COSMIC
COSN8204122 8898 COSMIC
COSN26958425 8983 COSMIC
COSN15914818 9040 COSMIC
COSN26556236 9123 COSMIC
COSN5590499 9204 COSMIC
COSN25713717 9393 COSMIC
COSN22537887 9679 COSMIC
COSN26958426 9804 COSMIC
COSN15624552 9868 COSMIC
COSN28648804 9869 COSMIC
COSN26573976 9909 COSMIC
COSN17855061 9941 COSMIC
COSN15624553 10342 COSMIC
COSN15624554 10463 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778185033 9 dbSNP
rs796621978 11 dbSNP
rs772449984 16 dbSNP
rs1054922771 19 dbSNP
rs1024411866 20 dbSNP
rs574050232 20 dbSNP
rs745382368 20 dbSNP
rs771576763 20 dbSNP
rs780262946 20 dbSNP
rs942393648 20 dbSNP
rs1366397450 21 dbSNP
rs771630896 21 dbSNP
rs200742171 22 dbSNP
rs769290329 33 dbSNP
rs1250913993 35 dbSNP
rs1490849383 35 dbSNP
rs1292617827 36 dbSNP
rs1209367415 39 dbSNP
rs1350265427 39 dbSNP
rs144048243 39 dbSNP
rs762634132 39 dbSNP
rs768154435 39 dbSNP
rs1367443738 42 dbSNP
rs1405012102 45 dbSNP
rs763365149 48 dbSNP
rs1343219414 52 dbSNP
rs1443961599 53 dbSNP
rs1416600971 61 dbSNP
rs1331631003 62 dbSNP
rs1407326113 64 dbSNP
rs746975346 67 dbSNP
rs1388120073 83 dbSNP
rs1454061557 85 dbSNP
rs899276346 85 dbSNP
rs1410998726 87 dbSNP
rs1156796835 91 dbSNP
rs1481363755 92 dbSNP
rs1198239824 95 dbSNP
rs1269567671 95 dbSNP
rs955089941 96 dbSNP
rs1264047103 97 dbSNP
rs1012315079 98 dbSNP
rs1227437478 99 dbSNP
rs987657083 102 dbSNP
rs1225781507 108 dbSNP
rs1303808135 110 dbSNP
rs1003422875 112 dbSNP
rs112796901 112 dbSNP
rs1274839189 112 dbSNP
rs1318259184 112 dbSNP
rs80110625 112 dbSNP
rs869247127 112 dbSNP
rs906536685 112 dbSNP
rs1470871211 115 dbSNP
rs1429888484 116 dbSNP
rs1030835185 121 dbSNP
rs1217335740 123 dbSNP
rs752346793 124 dbSNP
rs1172213479 125 dbSNP
rs956584120 126 dbSNP
rs1277818682 127 dbSNP
rs1246496191 128 dbSNP
rs544738308 129 dbSNP
rs1216561211 133 dbSNP
rs1250176366 137 dbSNP
rs1463675196 138 dbSNP
rs1278457461 141 dbSNP
rs1218014063 143 dbSNP
rs1188343814 144 dbSNP
rs1396000663 146 dbSNP
rs1228548119 149 dbSNP
rs1479206811 150 dbSNP
rs1032661267 156 dbSNP
rs1011126678 158 dbSNP
rs1454323576 168 dbSNP
rs1359527671 177 dbSNP
rs1333380369 179 dbSNP
rs953941506 183 dbSNP
rs562691090 184 dbSNP
rs1398602489 186 dbSNP
rs1171401945 188 dbSNP
rs1169299402 192 dbSNP
rs755577217 209 dbSNP
rs1400827138 214 dbSNP
rs1388491233 216 dbSNP
rs1321926278 219 dbSNP
rs985698836 231 dbSNP
rs912363430 232 dbSNP
rs966112755 238 dbSNP
rs1237289854 255 dbSNP
rs1433821341 258 dbSNP
rs976112592 261 dbSNP
rs533372878 277 dbSNP
rs545287968 292 dbSNP
rs1205236164 293 dbSNP
rs1332675348 293 dbSNP
rs964155460 316 dbSNP
rs560460712 320 dbSNP
rs1434012434 321 dbSNP
rs1274233514 327 dbSNP
rs1351270737 331 dbSNP
rs975156205 335 dbSNP
rs1283353728 347 dbSNP
rs1445639004 348 dbSNP
rs922294415 351 dbSNP
rs1308578150 356 dbSNP
rs527621243 358 dbSNP
rs548898261 363 dbSNP
rs919281751 366 dbSNP
rs768380068 376 dbSNP
rs1413394251 381 dbSNP
rs567503270 384 dbSNP
rs1208418630 386 dbSNP
rs929294879 393 dbSNP
rs1180474019 397 dbSNP
rs531261264 401 dbSNP
rs1233903098 407 dbSNP
rs1182092063 408 dbSNP
rs189201459 409 dbSNP
rs940942081 410 dbSNP
rs1224130177 417 dbSNP
rs759820133 421 dbSNP
rs1288780427 424 dbSNP
rs1055711451 427 dbSNP
rs1352580376 429 dbSNP
rs1288867712 442 dbSNP
rs1409159697 443 dbSNP
rs570877689 453 dbSNP
rs1348611991 456 dbSNP
rs1305000212 458 dbSNP
rs920771098 460 dbSNP
rs538269703 470 dbSNP
rs1160758486 471 dbSNP
rs896629209 477 dbSNP
rs371233781 479 dbSNP
rs1162963449 480 dbSNP
rs1402733284 483 dbSNP
rs1413197212 484 dbSNP
rs1456240896 498 dbSNP
rs1471881981 498 dbSNP
rs769455484 499 dbSNP
rs878876017 526 dbSNP
rs1392405462 542 dbSNP
rs1192420209 547 dbSNP
rs1384901273 549 dbSNP
rs906546296 551 dbSNP
rs1218970045 557 dbSNP
rs752853873 562 dbSNP
rs902210444 565 dbSNP
rs1000933342 569 dbSNP
rs1268502816 570 dbSNP
rs1336300227 574 dbSNP
rs1052376244 579 dbSNP
rs1031967464 580 dbSNP
rs778171102 581 dbSNP
rs1010802824 583 dbSNP
rs553378671 585 dbSNP
rs1291958991 589 dbSNP
rs1006778597 593 dbSNP
rs1411514779 605 dbSNP
rs1433178472 607 dbSNP
rs1389720388 610 dbSNP
rs1019882680 625 dbSNP
rs1022585161 628 dbSNP
rs1286374954 629 dbSNP
rs1348771934 630 dbSNP
rs965162808 640 dbSNP
rs1227842827 654 dbSNP
rs976164871 668 dbSNP
rs996604336 674 dbSNP
rs1029396326 685 dbSNP
rs1208457679 691 dbSNP
rs1465951638 694 dbSNP
rs1289536525 706 dbSNP
rs1026347372 707 dbSNP
rs1207863737 707 dbSNP
rs982476746 710 dbSNP
rs1257621548 712 dbSNP
rs950760491 724 dbSNP
rs1210762956 729 dbSNP
rs1185053892 730 dbSNP
rs1250228630 735 dbSNP
rs1472006262 737 dbSNP
rs1188006731 751 dbSNP
rs985199846 762 dbSNP
rs908185557 771 dbSNP
rs1366189938 805 dbSNP
rs1456016399 811 dbSNP
rs1297165112 827 dbSNP
rs1433267240 829 dbSNP
rs566807281 847 dbSNP
rs938278249 848 dbSNP
rs1397031853 853 dbSNP
rs991064316 857 dbSNP
rs1303888872 865 dbSNP
rs1465962068 867 dbSNP
rs1357969403 869 dbSNP
rs1173339921 871 dbSNP
rs1431386891 871 dbSNP
rs973674006 876 dbSNP
rs1306160078 877 dbSNP
rs920769179 877 dbSNP
rs1369845323 881 dbSNP
rs1409327008 882 dbSNP
rs781744624 886 dbSNP
rs1200871777 895 dbSNP
rs1482866870 910 dbSNP
rs948183787 917 dbSNP
rs1207314414 920 dbSNP
rs757111493 924 dbSNP
rs1313472071 927 dbSNP
rs1274146564 930 dbSNP
rs1342502723 931 dbSNP
rs1226494709 933 dbSNP
rs918113711 938 dbSNP
rs1385323645 943 dbSNP
rs949520387 965 dbSNP
rs1283811287 971 dbSNP
rs1042196499 972 dbSNP
rs534549352 974 dbSNP
rs1300431263 976 dbSNP
rs1343383388 978 dbSNP
rs1370668958 979 dbSNP
rs928023775 980 dbSNP
rs555678787 985 dbSNP
rs574177850 986 dbSNP
rs537910096 990 dbSNP
rs879837420 993 dbSNP
rs1253914140 994 dbSNP
rs1200555086 995 dbSNP
rs1043614961 996 dbSNP
rs946657944 996 dbSNP
rs556707967 1007 dbSNP
rs578049483 1008 dbSNP
rs1266321117 1010 dbSNP
rs545406631 1024 dbSNP
rs560514319 1035 dbSNP
rs143262149 1036 dbSNP
rs1007240376 1040 dbSNP
rs1240381453 1055 dbSNP
rs890905239 1062 dbSNP
rs750233689 1066 dbSNP
rs1290712305 1076 dbSNP
rs867123815 1083 dbSNP
rs1350463493 1101 dbSNP
rs1306839246 1102 dbSNP
rs1019474408 1103 dbSNP
rs1392364361 1113 dbSNP
rs758337061 1118 dbSNP
rs901046553 1123 dbSNP
rs1457186840 1126 dbSNP
rs780006588 1131 dbSNP
rs578062907 1134 dbSNP
rs1027881888 1142 dbSNP
rs1251078074 1152 dbSNP
rs950813238 1157 dbSNP
rs781743432 1166 dbSNP
rs1354916332 1173 dbSNP
rs1209502072 1179 dbSNP
rs77987489 1183 dbSNP
rs1369901150 1200 dbSNP
rs1435201005 1205 dbSNP
rs1303502106 1206 dbSNP
rs928118615 1208 dbSNP
rs1287067137 1221 dbSNP
rs939474341 1249 dbSNP
rs554215585 1252 dbSNP
rs1332353635 1254 dbSNP
rs988232936 1259 dbSNP
rs913898485 1262 dbSNP
rs946698439 1269 dbSNP
rs1322292903 1277 dbSNP
rs180729389 1281 dbSNP
rs1411069181 1313 dbSNP
rs1156862302 1315 dbSNP
rs1479025361 1316 dbSNP
rs1378302105 1317 dbSNP
rs1333810549 1321 dbSNP
rs959383171 1336 dbSNP
rs991508027 1339 dbSNP
rs918166168 1341 dbSNP
rs1209732420 1344 dbSNP
rs768382923 1350 dbSNP
rs549584071 1351 dbSNP
rs1266740670 1355 dbSNP
rs1050955110 1359 dbSNP
rs1366162714 1371 dbSNP
rs1231112867 1373 dbSNP
rs1295794323 1375 dbSNP
rs564616881 1379 dbSNP
rs1274893380 1381 dbSNP
rs1342090649 1382 dbSNP
rs1368320968 1386 dbSNP
rs1234689963 1395 dbSNP
rs187294870 1407 dbSNP
rs1435458143 1409 dbSNP
rs1004378802 1410 dbSNP
rs1482017486 1421 dbSNP
rs192403370 1427 dbSNP
rs5871723 1440 dbSNP
rs543039715 1447 dbSNP
rs1402868076 1455 dbSNP
rs1172059466 1462 dbSNP
rs765875738 1465 dbSNP
rs936436279 1478 dbSNP
rs1389251454 1508 dbSNP
rs181887421 1515 dbSNP
rs1022573914 1517 dbSNP
rs1178214033 1522 dbSNP
rs1053520568 1525 dbSNP
rs1452947303 1545 dbSNP
rs778493656 1546 dbSNP
rs1199332247 1553 dbSNP
rs910905729 1559 dbSNP
rs942370993 1561 dbSNP
rs1175750899 1567 dbSNP
rs1389689156 1570 dbSNP
rs1364070546 1575 dbSNP
rs1268165417 1576 dbSNP
rs1437472261 1579 dbSNP
rs1040978198 1584 dbSNP
rs1333442774 1587 dbSNP
rs1364997885 1591 dbSNP
rs1372517041 1608 dbSNP
rs1169364771 1611 dbSNP
rs1429319839 1612 dbSNP
rs1417720752 1618 dbSNP
rs1165352100 1636 dbSNP
rs980984268 1641 dbSNP
rs1237346496 1652 dbSNP
rs1186085804 1656 dbSNP
rs369376929 1667 dbSNP
rs1387687938 1669 dbSNP
rs1253316532 1670 dbSNP
rs1283478787 1670 dbSNP
rs1356790511 1670 dbSNP
rs1484375690 1670 dbSNP
rs199790744 1670 dbSNP
rs879198655 1670 dbSNP
rs901102187 1671 dbSNP
rs1035183783 1687 dbSNP
rs1300721299 1691 dbSNP
rs1304103259 1691 dbSNP
rs960826096 1692 dbSNP
rs1352923109 1693 dbSNP
rs1019525926 1699 dbSNP
rs1325780536 1701 dbSNP
rs1406281646 1705 dbSNP
rs988633115 1705 dbSNP
rs1231923232 1715 dbSNP
rs994013516 1716 dbSNP
rs1163283536 1719 dbSNP
rs1268146026 1734 dbSNP
rs1330781483 1735 dbSNP
rs1206503923 1750 dbSNP
rs913960223 1759 dbSNP
rs1182246812 1763 dbSNP
rs1046896289 1766 dbSNP
rs1230749590 1779 dbSNP
rs1488710388 1785 dbSNP
rs1223348858 1789 dbSNP
rs1192673755 1792 dbSNP
rs534177858 1793 dbSNP
rs374539293 1798 dbSNP
rs1331117338 1810 dbSNP
rs1006741184 1815 dbSNP
rs146813175 1816 dbSNP
rs1288925973 1824 dbSNP
rs1227791419 1827 dbSNP
rs1432477294 1830 dbSNP
rs1175812943 1836 dbSNP
rs1371319419 1839 dbSNP
rs1016338003 1845 dbSNP
rs1295454767 1852 dbSNP
rs932589341 1863 dbSNP
rs959671672 1863 dbSNP
rs1412712678 1874 dbSNP
rs1324298060 1886 dbSNP
rs1459204528 1894 dbSNP
rs1012253181 1901 dbSNP
rs1024944419 1905 dbSNP
rs1389940975 1908 dbSNP
rs1050967605 1914 dbSNP
rs1417958726 1923 dbSNP
rs567724316 1932 dbSNP
rs1157280278 1933 dbSNP
rs1344798816 1941 dbSNP
rs978315140 1946 dbSNP
rs1478151554 1996 dbSNP
rs1458764890 1998 dbSNP
rs1252059570 2009 dbSNP
rs538453906 2013 dbSNP
rs1466092335 2021 dbSNP
rs747742319 2022 dbSNP
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rs1172840982 10044 dbSNP
rs1316374891 10070 dbSNP
rs1465338876 10075 dbSNP
rs896611137 10078 dbSNP
rs970524606 10079 dbSNP
rs1172438176 10084 dbSNP
rs1450007750 10085 dbSNP
rs1389567566 10090 dbSNP
rs978229561 10099 dbSNP
rs1009620809 10101 dbSNP
rs923662393 10108 dbSNP
rs537426519 10109 dbSNP
rs968018329 10112 dbSNP
rs867729371 10117 dbSNP
rs190679160 10123 dbSNP
rs1342105374 10127 dbSNP
rs1296176359 10136 dbSNP
rs1225503805 10143 dbSNP
rs1197238027 10149 dbSNP
rs1334386315 10150 dbSNP
rs1255730065 10153 dbSNP
rs1399708659 10155 dbSNP
rs1309633768 10164 dbSNP
rs911144161 10182 dbSNP
rs1389511153 10190 dbSNP
rs567539643 10193 dbSNP
rs1028689056 10203 dbSNP
rs1204008371 10207 dbSNP
rs953970902 10211 dbSNP
rs1421917236 10227 dbSNP
rs1422300940 10233 dbSNP
rs1230318782 10237 dbSNP
rs569200534 10238 dbSNP
rs1206356366 10241 dbSNP
rs1482956295 10242 dbSNP
rs539793297 10243 dbSNP
rs912390613 10263 dbSNP
rs776384945 10265 dbSNP
rs1169900221 10267 dbSNP
rs1048269845 10271 dbSNP
rs1284278286 10276 dbSNP
rs886479061 10282 dbSNP
rs1006229357 10288 dbSNP
rs1338355622 10289 dbSNP
rs747948354 10291 dbSNP
rs769478809 10300 dbSNP
rs1410188591 10302 dbSNP
rs1369788278 10318 dbSNP
rs1306105795 10330 dbSNP
rs1037673365 10335 dbSNP
rs1337724490 10338 dbSNP
rs1162763689 10345 dbSNP
rs895415495 10351 dbSNP
rs1012891929 10354 dbSNP
rs772670678 10359 dbSNP
rs1183225605 10360 dbSNP
rs919610220 10362 dbSNP
rs1271283732 10367 dbSNP
rs1025167562 10368 dbSNP
rs1394864107 10370 dbSNP
rs762679380 10375 dbSNP
rs1250146020 10381 dbSNP
rs558024204 10388 dbSNP
rs930950241 10408 dbSNP
rs1326548980 10412 dbSNP
rs1339052317 10416 dbSNP
rs1044053375 10423 dbSNP
rs1228927237 10440 dbSNP
rs112174716 10444 dbSNP
rs1289908824 10448 dbSNP
rs148878357 10454 dbSNP
rs1353690192 10462 dbSNP
rs1228705313 10463 dbSNP
rs1269618719 10463 dbSNP
rs1316856492 10463 dbSNP
rs534001428 10466 dbSNP
rs1264848698 10467 dbSNP
rs1438462458 10470 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HeLa
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in Chi_ControlB_2A8_130_50. RNA binding protein: AGO. Condition:HeLa cell Control B ...

- Chi SW; Zang JB; Mele A; Darnell RB, 2009, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucagaggaccuccACCAUUUUg 5'
                       |||||||| 
Target 5' -------------UGGUAAAAa 3'
 		1 - 9
Article - Chi SW; Zang JB; Mele A; Darnell RB
- Nature, 2009
MicroRNAs (miRNAs) have critical roles in the regulation of gene expression; however, as miRNA activity requires base pairing with only 6-8 nucleotides of messenger RNA, predicting target mRNAs is a major challenge. Recently, high-throughput sequencing of RNAs isolated by crosslinking immunoprecipitation (HITS-CLIP) has identified functional protein-RNA interaction sites. Here we use HITS-CLIP to covalently crosslink native argonaute (Ago, also called Eif2c) protein-RNA complexes in mouse brain. This produced two simultaneous data sets-Ago-miRNA and Ago-mRNA binding sites-that were combined with bioinformatic analysis to identify interaction sites between miRNA and target mRNA. We validated genome-wide interaction maps for miR-124, and generated additional maps for the 20 most abundant miRNAs present in P13 mouse brain. Ago HITS-CLIP provides a general platform for exploring the specificity and range of miRNA action in vivo, and identifies precise sequences for targeting clinically relevant miRNA-mRNA interactions.
LinkOut: [PMID: 19536157]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions EF3D-AGO2 , LCL-BAC
Disease MIMAT0013515
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020021. RNA binding protein: AGO2. Condition:EBV B95-8-infected "PAR-CLIP data was present in GSM1020023. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey