miRTarBase - #MIRT095611


—
pre-miRNA Information
pre-miRNA hsa-mir-4672   
Genomic Coordinates chr9: 127869415 - 127869495
Description Homo sapiens miR-4672 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4672
Sequence 51| UUACACAGCUGGACAGAGGCA |71
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1234304182 2 dbSNP
rs1012722802 6 dbSNP
rs1212523496 9 dbSNP
rs1027978850 10 dbSNP
rs1212553533 14 dbSNP
rs895240447 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NR3C1   
Synonyms GCCR, GCR, GCRST, GR, GRL
Description nuclear receptor subfamily 3 group C member 1
Transcript NM_000176   
Other Transcripts NM_001018074 , NM_001018075 , NM_001018076 , NM_001018077 , NM_001020825 , NM_001024094   
Expression
Putative miRNA Targets on NR3C1
3'UTR of NR3C1
(miRNA target sites are highlighted)		 
>NR3C1|NM_000176|3'UTR
   1 CTGCCTTAATAAGAATGGTTGCCTTAAAGAAAGTCGAATTAATAGCTTTTATTGTATAAACTATCAGTTTGTCCTGTAGA
  81 GGTTTTGTTGTTTTATTTTTTATTGTTTTCATCTGTTGTTTTGTTTTAAATACGCACTACATGTGGTTTATAGAGGGCCA
 161 AGACTTGGCAACAGAAGCAGTTGAGTCGTCATCACTTTTCAGTGATGGGAGAGTAGATGGTGAAATTTATTAGTTAATAT
 241 ATCCCAGAAATTAGAAACCTTAATATGTGGACGTAATCTCCACAGTCAAAGAAGGATGGCACCTAAACCACCAGTGCCCA
 321 AAGTCTGTGTGATGAACTTTCTCTTCATACTTTTTTTCACAGTTGGCTGGATGAAATTTTCTAGACTTTCTGTTGGTGTA
 401 TCCCCCCCCTGTATAGTTAGGATAGCATTTTTGATTTATGCATGGAAACCTGAAAAAAAGTTTACAAGTGTATATCAGAA
 481 AAGGGAAGTTGTGCCTTTTATAGCTATTACTGTCTGGTTTTAACAATTTCCTTTATATTTAGTGAACTACGCTTGCTCAT
 561 TTTTTCTTACATAATTTTTTATTCAAGTTATTGTACAGCTGTTTAAGATGGGCAGCTAGTTCGTAGCTTTCCCAAATAAA
 641 CTCTAAACATTAATCAATCATCTGTGTGAAAATGGGTTGGTGCTTCTAACCTGATGGCACTTAGCTATCAGAAGACCACA
 721 AAAATTGACTCAAATCTCCAGTATTCTTGTCAAAAAAAAAAAAAAAAAAGCTCATATTTTGTATATATCTGCTTCAGTGG
 801 AGAATTATATAGGTTGTGCAAATTAACAGTCCTAACTGGTATAGAGCACCTAGTCCAGTGACCTGCTGGGTAAACTGTGG
 881 ATGATGGTTGCAAAAGACTAATTTAAAAAATAACTACCAAGAGGCCCTGTCTGTACCTAACGCCCTATTTTTGCAATGGC
 961 TATATGGCAAGAAAGCTGGTAAACTATTTGTCTTTCAGGACCTTTTGAAGTAGTTTGTATAACTTCTTAAAAGTTGTGAT
1041 TCCAGATAACCAGCTGTAACACAGCTGAGAGACTTTTAATCAGACAAAGTAATTCCTCTCACTAAACTTTACCCAAAAAC
1121 TAAATCTCTAATATGGCAAAAATGGCTAGACACCCATTTTCACATTCCCATCTGTCACCAATTGGTTAATCTTTCCTGAT
1201 GGTACAGGAAAGCTCAGCTACTGATTTTTGTGATTTAGAACTGTATGTCAGACATCCATGTTTGTAAAACTACACATCCC
1281 TAATGTGTGCCATAGAGTTTAACACAAGTCCTGTGAATTTCTTCACTGTTGAAAATTATTTTAAACAAAATAGAAGCTGT
1361 AGTAGCCCTTTCTGTGTGCACCTTACCAACTTTCTGTAAACTCAAAACTTAACATATTTACTAAGCCACAAGAAATTTGA
1441 TTTCTATTCAAGGTGGCCAAATTATTTGTGTAATAGAAAACTGAAAATCTAATATTAAAAATATGGAACTTCTAATATAT
1521 TTTTATATTTAGTTATAGTTTCAGATATATATCATATTGGTATTCACTAATCTGGGAAGGGAAGGGCTACTGCAGCTTTA
1601 CATGCAATTTATTAAAATGATTGTAAAATAGCTTGTATAGTGTAAAATAAGAATGATTTTTAGATGAGATTGTTTTATCA
1681 TGACATGTTATATATTTTTTGTAGGGGTCAAAGAAATGCTGATGGATAACCTATATGATTTATAGTTTGTACATGCATTC
1761 ATACAGGCAGCGATGGTCTCAGAAACCAAACAGTTTGCTCTAGGGGAAGAGGGAGATGGAGACTGGTCCTGTGTGCAGTG
1841 AAGGTTGCTGAGGCTCTGACCCAGTGAGATTACAGAGGAAGTTATCCTCTGCCTCCCATTCTGACCACCCTTCTCATTCC
1921 AACAGTGAGTCTGTCAGCGCAGGTTTAGTTTACTCAATCTCCCCTTGCACTAAAGTATGTAAAGTATGTAAACAGGAGAC
2001 AGGAAGGTGGTGCTTACATCCTTAAAGGCACCATCTAATAGCGGGTTACTTTCACATACAGCCCTCCCCCAGCAGTTGAA
2081 TGACAACAGAAGCTTCAGAAGTTTGGCAATAGTTTGCATAGAGGTACCAGCAATATGTAAATAGTGCAGAATCTCATAGG
2161 TTGCCAATAATACACTAATTCCTTTCTATCCTACAACAAGAGTTTATTTCCAAATAAAATGAGGACATGTTTTTGTTTTC
2241 TTTGAATGCTTTTTGAATGTTATTTGTTATTTTCAGTATTTTGGAGAAATTATTTAATAAAAAAACAATCATTTGCTTTT
2321 TGAATGCTCTCTAAAAGGGAATGTAATATTTTAAGATGGTGTGTAACCCGGCTGGATAAATTTTTGGTGCCTAAGAAAAC
2401 TGCTTGAATATTCTTATCAATGACAGTGTTAAGTTTCAAAAAGAGCTTCTAAAACGTAGATTATCATTCCTTTATAGAAT
2481 GTTATGTGGTTAAAACCAGAAAGCACATCTCACACATTAATCTGATTTTCATCCCAACAATCTTGGCGCTCAAAAAATAG
2561 AACTCAATGAGAAAAAGAAGATTATGTGCACTTCGTTGTCAATAATAAGTCAACTGATGCTCATCGACAACTATAGGAGG
2641 CTTTTCATTAAATGGGAAAAGAAGCTGTGCCCTTTTAGGATACGTGGGGGAAAAGAAAGTCATCTTAATTATGTTTAATT
2721 GTGGATTTAAGTGCTATATGGTGGTGCTGTTTGAAAGCAGATTTATTTCCTATGTATGTGTTATCTGGCCATCCCAACCC
2801 AAACTGTTGAAGTTTGTAGTAACTTCAGTGAGAGTTGGTTACTCACAACAAATCCTGAAAAGTATTTTTAGTGTTTGTAG
2881 GTATTCTGTGGGATACTATACAAGCAGAACTGAGGCACTTAGGACATAACACTTTTGGGGTATATATATCCAAATGCCTA
2961 AAACTATGGGAGGAAACCTTGGCCACCCCAAAAGGAAAACTAACATGATTTGTGTCTATGAAGTGCTGGATAATTAGCAT
3041 GGGATGAGCTCTGGGCATGCCATGAAGGAAAGCCACGCTCCCTTCAGAATTCAGAGGCAGGGAGCAATTCCAGTTTCACC
3121 TAAGTCTCATAATTTTAGTTCCCTTTTAAAAACCCTGAAAACTACATCACCATGGAATGAAAAATATTGTTATACAATAC
3201 ATTGATCTGTCAAACTTCCAGAACCATGGTAGCCTTCAGTGAGATTTCCATCTTGGCTGGTCACTCCCTGACTGTAGCTG
3281 TAGGTGAATGTGTTTTTGTGTGTGTGTGTCTGGTTTTAGTGTCAGAAGGGAAATAAAAGTGTAAGGAGGACACTTTAAAC
3361 CCTTTGGGTGGAGTTTCGTAATTTCCCAGACTATTTTCAAGCAACCTGGTCCACCCAGGATTAGTGACCAGGTTTTCAGG
3441 AAAGGATTTGCTTCTCTCTAGAAAATGTCTGAAAGGATTTTATTTTCTGATGAAAGGCTGTATGAAAATACCCTCCTCAA
3521 ATAACTTGCTTAACTACATATAGATTCAAGTGTGTCAATATTCTATTTTGTATATTAAATGCTATATAATGGGGACAAAT
3601 CTATATTATACTGTGTATGGCATTATTAAGAAGCTTTTTCATTATTTTTTATCACAGTAATTTTAAAATGTGTAAAAATT
3681 AAAACCAGTGACTCCTGTTTAAAAATAAAAGTTGTAGTTTTTTATTCATGCTGAATAATAATCTGTAGTTAAAAAAAAAG
3761 TGTCTTTTTACCTACGCAGTGAAATGTCAGACTGTAAAACCTTGTGTGGAAATGTTTAACTTTTATTTTTTCATTTAAAT
3841 TTGCTGTTCTGGTATTACCAAACCACACATTTGTACCGAATTGGCAGTAAATGTTAGCCATTTACAGCAATGCCAAATAT
3921 GGAGAAACATCATAATAAAAAAATCTGCTTTTTCATTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acGGAGACAGGUCGACACAUu 5'
            :|| | |:   ||||||| 
Target 5' aaTCTATATTATACTGTGTAt 3'
 3598 - 3618 147.00 -10.30
2 
miRNA  3' acGGAGACAGG--UC-GACACAUu 5'
            ||  || ||  || ||||||: 
Target 5' caCCAGTGCCCAAAGTCTGTGTGa 3'
 309 - 332 137.00 -14.90
3 
miRNA  3' acggaGACAGGUCGACACAUu 5'
               :||| ||||||| || 
Target 5' agttaTTGTACAGCTGTTTAa 3'
 586 - 606 136.00 -15.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
351362 36 ClinVar
351361 102 ClinVar
905012 134 ClinVar
351360 149 ClinVar
905011 256 ClinVar
351359 290 ClinVar
904223 293 ClinVar
351358 402 ClinVar
351356 410 ClinVar
351357 410 ClinVar
904222 534 ClinVar
351355 618 ClinVar
351354 751 ClinVar
351353 752 ClinVar
351350 770 ClinVar
351351 770 ClinVar
351352 770 ClinVar
904221 808 ClinVar
351349 838 ClinVar
351348 869 ClinVar
904220 905 ClinVar
351347 937 ClinVar
351346 946 ClinVar
907558 954 ClinVar
907557 988 ClinVar
351345 1055 ClinVar
351344 1089 ClinVar
351343 1176 ClinVar
351342 1226 ClinVar
351341 1241 ClinVar
351340 1249 ClinVar
351339 1407 ClinVar
907556 1464 ClinVar
907555 1466 ClinVar
907554 1492 ClinVar
351338 1509 ClinVar
351337 1589 ClinVar
351336 1628 ClinVar
906540 1825 ClinVar
906539 1880 ClinVar
906538 1941 ClinVar
906537 1957 ClinVar
351335 2031 ClinVar
351334 2042 ClinVar
351333 2057 ClinVar
351332 2151 ClinVar
351331 2188 ClinVar
904946 2367 ClinVar
904945 2370 ClinVar
351330 2521 ClinVar
351329 2567 ClinVar
351328 2601 ClinVar
904944 2621 ClinVar
351327 2873 ClinVar
904171 2875 ClinVar
904170 2928 ClinVar
904169 2947 ClinVar
904168 2956 ClinVar
351326 3003 ClinVar
351325 3046 ClinVar
351324 3076 ClinVar
351323 3077 ClinVar
351322 3153 ClinVar
907489 3259 ClinVar
351321 3298 ClinVar
351320 3300 ClinVar
351319 3319 ClinVar
907488 3330 ClinVar
907487 3378 ClinVar
906491 3383 ClinVar
906490 3406 ClinVar
351318 3431 ClinVar
351317 3466 ClinVar
351316 3550 ClinVar
906489 3580 ClinVar
906488 3685 ClinVar
351315 3760 ClinVar
351314 3833 ClinVar
904886 3846 ClinVar
904885 3868 ClinVar
904884 3877 ClinVar
351313 3937 ClinVar
COSN30142280 36 COSMIC
COSN30507942 36 COSMIC
COSN30156737 44 COSMIC
COSN31574828 49 COSMIC
COSN30507945 54 COSMIC
COSN30134621 55 COSMIC
COSN30116195 62 COSMIC
COSN30458439 74 COSMIC
COSN30520424 95 COSMIC
COSN25709572 109 COSMIC
COSN31525188 117 COSMIC
COSN31555178 158 COSMIC
COSN31485052 168 COSMIC
COSN31483902 476 COSMIC
COSN31576254 559 COSMIC
COSN31582872 584 COSMIC
COSN2073896 657 COSMIC
COSN26644007 719 COSMIC
COSN31569005 719 COSMIC
COSN19337067 751 COSMIC
COSN20101995 751 COSMIC
COSN27591070 752 COSMIC
COSN27920977 854 COSMIC
COSN20101994 910 COSMIC
COSN26642947 1273 COSMIC
COSN31570185 1437 COSMIC
COSN31609185 1444 COSMIC
COSN31606865 1489 COSMIC
COSN26642946 1582 COSMIC
COSN31552281 1640 COSMIC
COSN28826862 1719 COSMIC
COSN17509080 1749 COSMIC
COSN16031704 1845 COSMIC
COSN31484961 1998 COSMIC
COSN31579060 2009 COSMIC
COSN31484928 2098 COSMIC
COSN31583715 2249 COSMIC
COSN31523923 2298 COSMIC
COSN31578288 2327 COSMIC
COSN29300423 2374 COSMIC
COSN30134013 2401 COSMIC
COSN26556238 2424 COSMIC
COSN31582338 2432 COSMIC
COSN24301184 2461 COSMIC
COSN31607016 2462 COSMIC
COSN1308683 2466 COSMIC
COSM9069368 2470 COSMIC
COSM1063643 2509 COSMIC
COSM9001208 2515 COSMIC
COSM9694298 2522 COSMIC
COSN30527095 2531 COSMIC
COSN30120608 2534 COSMIC
COSN28878133 2547 COSMIC
COSN31608603 2582 COSMIC
COSN19706893 2594 COSMIC
COSN30580059 2595 COSMIC
COSN31571585 2620 COSMIC
COSN31587809 2625 COSMIC
COSN30129137 2636 COSMIC
COSN31576998 2638 COSMIC
COSN1308682 2644 COSMIC
COSN30653673 2647 COSMIC
COSN30681205 2665 COSMIC
COSN31581784 2712 COSMIC
COSN28888827 2716 COSMIC
COSN1308681 2720 COSMIC
COSN2073895 2948 COSMIC
COSN9927508 3289 COSMIC
COSN19163692 3377 COSMIC
COSN26175183 3647 COSMIC
COSN21774770 3651 COSMIC
COSN16238142 3721 COSMIC
COSN9409064 3736 COSMIC
rs6191 3298 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1190022440 13 dbSNP
rs374080656 15 dbSNP
rs765226934 17 dbSNP
rs67068607 18 dbSNP
rs1328578642 28 dbSNP
rs1275724595 34 dbSNP
rs769904760 34 dbSNP
rs1209774300 35 dbSNP
rs761674033 36 dbSNP
rs776231769 40 dbSNP
rs1329878655 43 dbSNP
rs1220010843 46 dbSNP
rs1350031667 50 dbSNP
rs1208063607 53 dbSNP
rs576368240 55 dbSNP
rs926658856 66 dbSNP
rs1246081641 70 dbSNP
rs984741485 73 dbSNP
rs952152879 81 dbSNP
rs1476837741 82 dbSNP
rs960995243 82 dbSNP
rs1159892288 90 dbSNP
rs1026372808 93 dbSNP
rs1408122616 96 dbSNP
rs776865643 102 dbSNP
rs1159142274 105 dbSNP
rs1387074492 106 dbSNP
rs1443658841 110 dbSNP
rs994418037 114 dbSNP
rs961204458 115 dbSNP
rs1019954456 118 dbSNP
rs1281449743 121 dbSNP
rs1434609201 121 dbSNP
rs1351227310 122 dbSNP
rs572745019 124 dbSNP
rs1011350035 129 dbSNP
rs149554437 133 dbSNP
rs72466429 134 dbSNP
rs1449619443 141 dbSNP
rs61753498 148 dbSNP
rs886060059 149 dbSNP
rs1252063777 153 dbSNP
rs1472012816 154 dbSNP
rs1179386233 156 dbSNP
rs746395759 168 dbSNP
rs1000516029 169 dbSNP
rs72466430 181 dbSNP
rs138156403 183 dbSNP
rs796369227 185 dbSNP
rs1390506064 186 dbSNP
rs1403921082 187 dbSNP
rs903618918 187 dbSNP
rs1042110497 188 dbSNP
rs945538456 196 dbSNP
rs974019003 199 dbSNP
rs1357378810 201 dbSNP
rs1245476385 207 dbSNP
rs1283499489 207 dbSNP
rs1354057937 208 dbSNP
rs72466431 219 dbSNP
rs1197324487 220 dbSNP
rs1274991847 233 dbSNP
rs1184954820 235 dbSNP
rs1482527849 237 dbSNP
rs1202516433 240 dbSNP
rs1259033609 244 dbSNP
rs1423849472 247 dbSNP
rs13306585 256 dbSNP
rs61753499 259 dbSNP
rs779218013 266 dbSNP
rs1258232522 272 dbSNP
rs61753500 273 dbSNP
rs992342252 278 dbSNP
rs1306369001 282 dbSNP
rs771089221 287 dbSNP
rs72542758 290 dbSNP
rs72466432 291 dbSNP
rs1396658562 293 dbSNP
rs952048746 296 dbSNP
rs1255918593 302 dbSNP
rs1229435848 307 dbSNP
rs61753501 308 dbSNP
rs1298079840 316 dbSNP
rs1341136414 329 dbSNP
rs1225762725 341 dbSNP
rs1281982188 350 dbSNP
rs1031288097 353 dbSNP
rs757775610 355 dbSNP
rs1256148309 357 dbSNP
rs1205889081 359 dbSNP
rs1309580008 360 dbSNP
rs1293916268 364 dbSNP
rs1216336519 390 dbSNP
rs999760234 396 dbSNP
rs919345752 399 dbSNP
rs1167006868 401 dbSNP
rs886060058 402 dbSNP
rs972136794 402 dbSNP
rs868013495 404 dbSNP
rs966524860 406 dbSNP
rs555578321 407 dbSNP
rs138959389 408 dbSNP
rs953968131 409 dbSNP
rs10482707 410 dbSNP
rs1312404939 410 dbSNP
rs72466434 410 dbSNP
rs886060057 410 dbSNP
rs72542759 411 dbSNP
rs796802714 411 dbSNP
rs1803634 416 dbSNP
rs1028220034 419 dbSNP
rs890938357 421 dbSNP
rs1046988448 423 dbSNP
rs535948454 425 dbSNP
rs1464776273 433 dbSNP
rs1000547034 439 dbSNP
rs929911876 442 dbSNP
rs1269832872 443 dbSNP
rs10482708 445 dbSNP
rs1418832226 449 dbSNP
rs1433998932 451 dbSNP
rs1190423722 453 dbSNP
rs1474250324 459 dbSNP
rs903479342 463 dbSNP
rs919812807 468 dbSNP
rs1255585611 469 dbSNP
rs1021036737 470 dbSNP
rs1009351521 472 dbSNP
rs1387802536 473 dbSNP
rs916709675 475 dbSNP
rs1295070744 477 dbSNP
rs1367967014 493 dbSNP
rs1249916521 500 dbSNP
rs896211361 506 dbSNP
rs751284757 509 dbSNP
rs1269400995 510 dbSNP
rs960929814 517 dbSNP
rs924124147 534 dbSNP
rs978228102 550 dbSNP
rs1336001075 551 dbSNP
rs1273388665 556 dbSNP
rs968299049 557 dbSNP
rs1182983565 566 dbSNP
rs1056580306 570 dbSNP
rs1411247056 570 dbSNP
rs1471574976 573 dbSNP
rs1166767595 574 dbSNP
rs1022517481 577 dbSNP
rs1457201710 581 dbSNP
rs1291491360 587 dbSNP
rs1372022495 591 dbSNP
rs1409989324 593 dbSNP
rs1319356272 597 dbSNP
rs566712325 601 dbSNP
rs989874753 605 dbSNP
rs1348037311 608 dbSNP
rs1315402365 609 dbSNP
rs886060056 618 dbSNP
rs905463197 622 dbSNP
rs546987683 623 dbSNP
rs533416751 632 dbSNP
rs1018050444 634 dbSNP
rs1329297117 635 dbSNP
rs773165034 636 dbSNP
rs764245842 643 dbSNP
rs1183565767 644 dbSNP
rs1414433874 650 dbSNP
rs145087561 652 dbSNP
rs772108148 654 dbSNP
rs1456609787 657 dbSNP
rs1367898045 661 dbSNP
rs1159940767 673 dbSNP
rs919306857 675 dbSNP
rs1306981634 678 dbSNP
rs1368210564 679 dbSNP
rs1449556451 680 dbSNP
rs1236874459 693 dbSNP
rs10482709 700 dbSNP
rs1305169920 707 dbSNP
rs1178607966 711 dbSNP
rs1380522804 713 dbSNP
rs1469168065 715 dbSNP
rs1228185265 719 dbSNP
rs972468232 729 dbSNP
rs1025443278 733 dbSNP
rs1255314610 741 dbSNP
rs1215137141 746 dbSNP
rs1394508473 751 dbSNP
rs886060055 751 dbSNP
rs1274149648 752 dbSNP
rs886060054 752 dbSNP
rs1212334652 753 dbSNP
rs79810680 753 dbSNP
rs1238062455 754 dbSNP
rs993926851 754 dbSNP
rs1179997934 766 dbSNP
rs1264295702 768 dbSNP
rs1167630878 770 dbSNP
rs1449815311 770 dbSNP
rs34248080 770 dbSNP
rs376203537 770 dbSNP
rs71576168 770 dbSNP
rs75055091 770 dbSNP
rs898419400 770 dbSNP
rs1239121979 771 dbSNP
rs1318270735 773 dbSNP
rs911961742 775 dbSNP
rs986651590 781 dbSNP
rs1221101416 790 dbSNP
rs1279455980 791 dbSNP
rs1239399250 799 dbSNP
rs550894488 802 dbSNP
rs1201736697 805 dbSNP
rs182544753 808 dbSNP
rs1465227549 810 dbSNP
rs1187691156 816 dbSNP
rs1028252570 821 dbSNP
rs979382104 830 dbSNP
rs1385246477 834 dbSNP
rs61753502 836 dbSNP
rs886060053 838 dbSNP
rs1289735122 841 dbSNP
rs1020646099 843 dbSNP
rs61753503 850 dbSNP
rs1009627841 855 dbSNP
rs62375497 865 dbSNP
rs547184962 869 dbSNP
rs896253519 877 dbSNP
rs1158518168 878 dbSNP
rs541511627 887 dbSNP
rs1320327386 890 dbSNP
rs1325004005 899 dbSNP
rs1438916326 900 dbSNP
rs1275629738 903 dbSNP
rs1367059258 904 dbSNP
rs1034700180 905 dbSNP
rs1270009984 910 dbSNP
rs1329779237 915 dbSNP
rs1197221883 917 dbSNP
rs1281913530 917 dbSNP
rs1163058832 925 dbSNP
rs1453071839 933 dbSNP
rs72542760 937 dbSNP
rs1266226251 939 dbSNP
rs376697040 941 dbSNP
rs559060506 942 dbSNP
rs886060052 946 dbSNP
rs752926438 947 dbSNP
rs1486550210 953 dbSNP
rs766219976 954 dbSNP
rs1215722514 956 dbSNP
rs762598029 962 dbSNP
rs1473220005 968 dbSNP
rs1159029067 977 dbSNP
rs1383311051 980 dbSNP
rs1407413582 983 dbSNP
rs796144066 984 dbSNP
rs773208301 988 dbSNP
rs765156491 998 dbSNP
rs776089440 1017 dbSNP
rs1018373029 1019 dbSNP
rs1277664695 1023 dbSNP
rs1296531160 1025 dbSNP
rs986453134 1036 dbSNP
rs955130988 1038 dbSNP
rs1025307919 1047 dbSNP
rs545795632 1051 dbSNP
rs886060051 1055 dbSNP
rs1297666184 1057 dbSNP
rs146445484 1069 dbSNP
rs979661319 1071 dbSNP
rs1251951928 1073 dbSNP
rs1177363948 1074 dbSNP
rs1181779778 1075 dbSNP
rs1362555392 1084 dbSNP
rs1474017792 1089 dbSNP
rs886060050 1089 dbSNP
rs557285664 1090 dbSNP
rs1377788116 1092 dbSNP
rs761728839 1095 dbSNP
rs968015428 1096 dbSNP
rs1413450057 1101 dbSNP
rs1422999502 1104 dbSNP
rs533412027 1113 dbSNP
rs1171406710 1124 dbSNP
rs778845587 1129 dbSNP
rs1371284031 1139 dbSNP
rs1409258700 1148 dbSNP
rs1237052067 1149 dbSNP
rs1326835320 1160 dbSNP
rs898326044 1163 dbSNP
rs1245358110 1171 dbSNP
rs1016880643 1174 dbSNP
rs61753504 1176 dbSNP
rs1230216769 1178 dbSNP
rs1374043612 1189 dbSNP
rs895034037 1196 dbSNP
rs1193395503 1198 dbSNP
rs1056876637 1202 dbSNP
rs1257579303 1203 dbSNP
rs987836801 1204 dbSNP
rs1188793868 1210 dbSNP
rs960327378 1211 dbSNP
rs1242952442 1213 dbSNP
rs72542761 1219 dbSNP
rs1443131458 1221 dbSNP
rs776170570 1223 dbSNP
rs6197 1225 dbSNP
rs145844044 1226 dbSNP
rs1404386861 1230 dbSNP
rs768128384 1241 dbSNP
rs1485751127 1246 dbSNP
rs1027810113 1248 dbSNP
rs10482710 1249 dbSNP
rs796478387 1251 dbSNP
rs560039363 1254 dbSNP
rs974911867 1259 dbSNP
rs995398046 1274 dbSNP
rs898096392 1277 dbSNP
rs1345058251 1287 dbSNP
rs1201570409 1288 dbSNP
rs1036992942 1291 dbSNP
rs1263034173 1292 dbSNP
rs912111973 1300 dbSNP
rs1229805388 1301 dbSNP
rs986874020 1303 dbSNP
rs1008909203 1308 dbSNP
rs535544234 1311 dbSNP
rs890422633 1313 dbSNP
rs770765693 1336 dbSNP
rs972442712 1336 dbSNP
rs1338733891 1339 dbSNP
rs749042465 1340 dbSNP
rs1017192887 1341 dbSNP
rs1175691510 1345 dbSNP
rs1277874053 1351 dbSNP
rs1403811545 1353 dbSNP
rs566977448 1364 dbSNP
rs1415474962 1368 dbSNP
rs1458688563 1375 dbSNP
rs1320995637 1378 dbSNP
rs779902600 1389 dbSNP
rs959555443 1393 dbSNP
rs1302913861 1401 dbSNP
rs886060049 1407 dbSNP
rs1331228780 1411 dbSNP
rs1332747212 1412 dbSNP
rs1283281848 1414 dbSNP
rs1414424533 1417 dbSNP
rs368438290 1420 dbSNP
rs1211060792 1421 dbSNP
rs1397573103 1421 dbSNP
rs1269198783 1423 dbSNP
rs932082306 1431 dbSNP
rs1034943105 1437 dbSNP
rs1203667637 1438 dbSNP
rs926008026 1446 dbSNP
rs183717692 1457 dbSNP
rs572503540 1464 dbSNP
rs1464444677 1468 dbSNP
rs946510889 1473 dbSNP
rs72542762 1474 dbSNP
rs988422959 1491 dbSNP
rs1451325414 1494 dbSNP
rs1294983410 1495 dbSNP
rs1390996480 1496 dbSNP
rs541254064 1503 dbSNP
rs886060048 1509 dbSNP
rs1351758257 1522 dbSNP
rs960611702 1533 dbSNP
rs1475234423 1535 dbSNP
rs893860396 1536 dbSNP
rs1316757618 1542 dbSNP
rs1237336350 1548 dbSNP
rs927668997 1549 dbSNP
rs1039616290 1553 dbSNP
rs1488939070 1557 dbSNP
rs1221964785 1560 dbSNP
rs1238722579 1567 dbSNP
rs943510099 1585 dbSNP
rs980394040 1586 dbSNP
rs748960510 1587 dbSNP
rs886060047 1589 dbSNP
rs1182866875 1591 dbSNP
rs1407139575 1597 dbSNP
rs760355290 1605 dbSNP
rs72542763 1606 dbSNP
rs969135560 1607 dbSNP
rs1368766834 1614 dbSNP
rs1185274601 1619 dbSNP
rs1300872932 1620 dbSNP
rs1027794866 1624 dbSNP
rs1371923762 1624 dbSNP
rs1409890789 1624 dbSNP
rs372713535 1628 dbSNP
rs962489837 1631 dbSNP
rs912168821 1632 dbSNP
rs1390114751 1633 dbSNP
rs1250903742 1640 dbSNP
rs1051957890 1642 dbSNP
rs1200295009 1649 dbSNP
rs1245571290 1654 dbSNP
rs1360562667 1654 dbSNP
rs933686516 1663 dbSNP
rs918234075 1677 dbSNP
rs1315910533 1678 dbSNP
rs142572785 1679 dbSNP
rs1479624451 1680 dbSNP
rs1183474490 1687 dbSNP
rs1256646654 1687 dbSNP
rs1443760166 1691 dbSNP
rs1015179826 1701 dbSNP
rs1391627605 1704 dbSNP
rs1429924005 1705 dbSNP
rs6187 1706 dbSNP
rs1358500786 1708 dbSNP
rs769457225 1717 dbSNP
rs1305076239 1719 dbSNP
rs1009187014 1730 dbSNP
rs1384051415 1730 dbSNP
rs1452353010 1733 dbSNP
rs1287230107 1739 dbSNP
rs909595073 1744 dbSNP
rs890696695 1754 dbSNP
rs1050440475 1762 dbSNP
rs996155774 1763 dbSNP
rs991101060 1771 dbSNP
rs1367625473 1772 dbSNP
rs531110936 1776 dbSNP
rs1282533704 1785 dbSNP
rs568517981 1791 dbSNP
rs1272402715 1793 dbSNP
rs1447867928 1793 dbSNP
rs1212214659 1800 dbSNP
rs548789293 1801 dbSNP
rs959230086 1817 dbSNP
rs528708882 1818 dbSNP
rs1043498361 1820 dbSNP
rs1035379863 1825 dbSNP
rs1449725482 1841 dbSNP
rs1003445602 1843 dbSNP
rs1416817332 1853 dbSNP
rs946572058 1860 dbSNP
rs10043662 1880 dbSNP
rs1010876630 1885 dbSNP
rs1052269097 1887 dbSNP
rs1335156618 1888 dbSNP
rs893884543 1898 dbSNP
rs1415249544 1905 dbSNP
rs939302308 1908 dbSNP
rs1360029021 1910 dbSNP
rs1221012934 1911 dbSNP
rs927868634 1915 dbSNP
rs1322754396 1916 dbSNP
rs1201642228 1923 dbSNP
rs1160967148 1925 dbSNP
rs72542764 1931 dbSNP
rs1039114100 1938 dbSNP
rs980425017 1939 dbSNP
rs1239987236 1941 dbSNP
rs191443867 1948 dbSNP
rs545962671 1955 dbSNP
rs968998036 1957 dbSNP
rs1191268777 1967 dbSNP
rs1233385787 1968 dbSNP
rs1427918974 1985 dbSNP
rs1480408843 1986 dbSNP
rs1174851487 1987 dbSNP
rs890615596 1993 dbSNP
rs1401640699 1995 dbSNP
rs72542765 1998 dbSNP
rs1438805874 1999 dbSNP
rs1051990952 2000 dbSNP
rs553034715 2000 dbSNP
rs1221658651 2003 dbSNP
rs532143172 2007 dbSNP
rs1456261035 2013 dbSNP
rs1351204072 2017 dbSNP
rs1222988632 2018 dbSNP
rs148820383 2030 dbSNP
rs369162225 2031 dbSNP
rs775062331 2035 dbSNP
rs987618734 2036 dbSNP
rs1452987420 2037 dbSNP
rs13306586 2042 dbSNP
rs72466437 2043 dbSNP
rs61753505 2044 dbSNP
rs72466438 2045 dbSNP
rs886060046 2057 dbSNP
rs560891121 2063 dbSNP
rs909659713 2071 dbSNP
rs1158367787 2072 dbSNP
rs1406181332 2076 dbSNP
rs996185387 2083 dbSNP
rs990573537 2091 dbSNP
rs904481903 2093 dbSNP
rs1021623365 2102 dbSNP
rs1288061071 2107 dbSNP
rs937868005 2109 dbSNP
rs1351544422 2116 dbSNP
rs927802412 2117 dbSNP
rs1010772836 2121 dbSNP
rs541197238 2122 dbSNP
rs772485867 2124 dbSNP
rs1238632723 2127 dbSNP
rs1052724694 2129 dbSNP
rs1316852646 2142 dbSNP
rs1376571002 2146 dbSNP
rs746282402 2151 dbSNP
rs981909808 2154 dbSNP
rs939166602 2162 dbSNP
rs966622667 2163 dbSNP
rs1441114094 2167 dbSNP
rs1246308220 2173 dbSNP
rs1290552918 2179 dbSNP
rs1351246658 2181 dbSNP
rs1321253097 2186 dbSNP
rs6193 2188 dbSNP
rs1044926597 2190 dbSNP
rs1250544550 2200 dbSNP
rs750021130 2203 dbSNP
rs947727216 2208 dbSNP
rs781051052 2212 dbSNP
rs61753506 2220 dbSNP
rs1446803273 2226 dbSNP
rs1184497514 2228 dbSNP
rs149745013 2244 dbSNP
rs1422899118 2245 dbSNP
rs1170575550 2252 dbSNP
rs1018134253 2258 dbSNP
rs1007623986 2262 dbSNP
rs1409334914 2262 dbSNP
rs780553320 2266 dbSNP
rs1453096100 2273 dbSNP
rs771390153 2275 dbSNP
rs749780072 2286 dbSNP
rs1380141523 2292 dbSNP
rs920295419 2298 dbSNP
rs72542766 2299 dbSNP
rs10482711 2306 dbSNP
rs576778002 2306 dbSNP
rs941053546 2306 dbSNP
rs1245166488 2307 dbSNP
rs937786026 2309 dbSNP
rs1447605691 2328 dbSNP
rs1195543439 2340 dbSNP
rs1373758913 2340 dbSNP
rs556943762 2346 dbSNP
rs1215001027 2349 dbSNP
rs987650154 2361 dbSNP
rs537319120 2365 dbSNP
rs568718223 2367 dbSNP
rs753145816 2370 dbSNP
rs945188247 2372 dbSNP
rs61753507 2382 dbSNP
rs1029248922 2383 dbSNP
rs535213997 2386 dbSNP
rs756213570 2387 dbSNP
rs752981756 2390 dbSNP
rs1276038310 2395 dbSNP
rs958302565 2400 dbSNP
rs968988399 2410 dbSNP
rs1022074810 2416 dbSNP
rs1262943882 2417 dbSNP
rs1460235942 2418 dbSNP
rs1207167013 2420 dbSNP
rs1010220802 2426 dbSNP
rs550951831 2433 dbSNP
rs1295485867 2436 dbSNP
rs566190545 2439 dbSNP
rs1398615644 2444 dbSNP
rs891896826 2446 dbSNP
rs552256509 2455 dbSNP
rs372840913 2456 dbSNP
rs770972721 2461 dbSNP
rs1360665175 2463 dbSNP
rs1334619923 2466 dbSNP
rs1428702536 2469 dbSNP
rs1368380440 2477 dbSNP
rs1003339691 2481 dbSNP
rs1427007779 2484 dbSNP
rs1393020072 2485 dbSNP
rs1449550611 2488 dbSNP
rs749313887 2489 dbSNP
rs1181811879 2501 dbSNP
rs1455142377 2503 dbSNP
rs778288633 2507 dbSNP
rs72542767 2511 dbSNP
rs1289158187 2513 dbSNP
rs868044796 2513 dbSNP
rs781165916 2518 dbSNP
rs886060045 2521 dbSNP
rs770870276 2524 dbSNP
rs867964935 2524 dbSNP
rs532254605 2530 dbSNP
rs906336864 2531 dbSNP
rs781400613 2532 dbSNP
rs754729426 2533 dbSNP
rs751141668 2535 dbSNP
rs72542768 2539 dbSNP
rs1226508705 2541 dbSNP
rs1488725906 2543 dbSNP
rs1283180829 2547 dbSNP
rs185224810 2548 dbSNP
rs758005523 2551 dbSNP
rs1213674903 2558 dbSNP
rs1409005392 2558 dbSNP
rs1348168784 2563 dbSNP
rs1309506879 2565 dbSNP
rs1350259949 2567 dbSNP
rs886060044 2567 dbSNP
rs746758861 2568 dbSNP
rs1348770192 2569 dbSNP
rs894692611 2571 dbSNP
rs1490528631 2580 dbSNP
rs1198680205 2582 dbSNP
rs899063097 2595 dbSNP
rs886060043 2601 dbSNP
rs1037790328 2602 dbSNP
rs180841482 2604 dbSNP
rs907624258 2605 dbSNP
rs1212918610 2607 dbSNP
rs1362957315 2609 dbSNP
rs987177296 2609 dbSNP
rs1310763263 2619 dbSNP
rs937632513 2620 dbSNP
rs906319040 2621 dbSNP
rs1403785791 2624 dbSNP
rs1303150840 2625 dbSNP
rs115618248 2626 dbSNP
rs1278402381 2633 dbSNP
rs1393597015 2636 dbSNP
rs1218211378 2639 dbSNP
rs933052849 2650 dbSNP
rs765732212 2653 dbSNP
rs945219977 2681 dbSNP
rs922127353 2683 dbSNP
rs61753508 2684 dbSNP
rs1339333205 2691 dbSNP
rs1289606543 2699 dbSNP
rs969400988 2703 dbSNP
rs1177669945 2705 dbSNP
rs530975127 2705 dbSNP
rs1417058440 2712 dbSNP
rs914808663 2713 dbSNP
rs541005619 2715 dbSNP
rs956032252 2716 dbSNP
rs1385467901 2721 dbSNP
rs1467551004 2727 dbSNP
rs1357145564 2729 dbSNP
rs572200856 2736 dbSNP
rs1161158566 2737 dbSNP
rs1410379302 2766 dbSNP
rs1035740419 2770 dbSNP
rs10482712 2772 dbSNP
rs970108786 2773 dbSNP
rs1299224186 2784 dbSNP
rs1373133305 2797 dbSNP
rs750245352 2801 dbSNP
rs1445023098 2807 dbSNP
rs545850451 2809 dbSNP
rs1477524575 2813 dbSNP
rs1012056784 2814 dbSNP
rs765062925 2827 dbSNP
rs972106615 2834 dbSNP
rs1037589911 2835 dbSNP
rs140650263 2839 dbSNP
rs1250676377 2846 dbSNP
rs1184071365 2859 dbSNP
rs1205335607 2862 dbSNP
rs557064456 2869 dbSNP
rs1006765664 2871 dbSNP
rs886060042 2873 dbSNP
rs753739423 2874 dbSNP
rs1421087791 2875 dbSNP
rs1482567489 2879 dbSNP
rs1428583529 2880 dbSNP
rs958987557 2883 dbSNP
rs1354473680 2893 dbSNP
rs1237208982 2898 dbSNP
rs1205649304 2904 dbSNP
rs537440931 2923 dbSNP
rs1407244460 2924 dbSNP
rs1051419823 2926 dbSNP
rs763603358 2928 dbSNP
rs1259560034 2935 dbSNP
rs921662903 2936 dbSNP
rs1216431379 2937 dbSNP
rs574783322 2940 dbSNP
rs555242390 2947 dbSNP
rs535011433 2956 dbSNP
rs1164432923 2960 dbSNP
rs1312814447 2961 dbSNP
rs117002579 2962 dbSNP
rs77137712 2963 dbSNP
rs989038194 2970 dbSNP
rs956487374 2971 dbSNP
rs552819882 2979 dbSNP
rs1243487939 2981 dbSNP
rs1485954185 2986 dbSNP
rs1185449091 2990 dbSNP
rs1416713730 3000 dbSNP
rs1001909144 3001 dbSNP
rs61753509 3003 dbSNP
rs746884118 3006 dbSNP
rs981395336 3007 dbSNP
rs1430485976 3010 dbSNP
rs1469599137 3012 dbSNP
rs759911973 3018 dbSNP
rs61753510 3022 dbSNP
rs1347184283 3028 dbSNP
rs1431680548 3033 dbSNP
rs1288397529 3038 dbSNP
rs1338481523 3039 dbSNP
rs886060041 3046 dbSNP
rs1022976028 3048 dbSNP
rs1322636552 3056 dbSNP
rs1012501148 3057 dbSNP
rs1286020231 3065 dbSNP
rs72542769 3076 dbSNP
rs886060040 3077 dbSNP
rs1260457213 3079 dbSNP
rs1167022321 3085 dbSNP
rs1004833478 3090 dbSNP
rs886341516 3096 dbSNP
rs61753511 3098 dbSNP
rs1270225940 3105 dbSNP
rs1050760577 3108 dbSNP
rs933348654 3119 dbSNP
rs1410556818 3130 dbSNP
rs1178331390 3141 dbSNP
rs997163185 3142 dbSNP
rs2301177 3153 dbSNP
rs972008433 3158 dbSNP
rs962106899 3161 dbSNP
rs1406843729 3163 dbSNP
rs909252284 3164 dbSNP
rs1344822198 3172 dbSNP
rs1434153782 3185 dbSNP
rs1038749931 3187 dbSNP
rs1196293663 3192 dbSNP
rs1281105550 3193 dbSNP
rs947545328 3195 dbSNP
rs1222896630 3200 dbSNP
rs1283421003 3234 dbSNP
rs914785856 3238 dbSNP
rs959121631 3249 dbSNP
rs375228840 3255 dbSNP
rs1053689207 3269 dbSNP
rs10482713 3273 dbSNP
rs1003109682 3284 dbSNP
rs1311892747 3285 dbSNP
rs1470710457 3296 dbSNP
rs6191 3298 dbSNP
rs971617101 3298 dbSNP
rs72542770 3300 dbSNP
rs866339105 3303 dbSNP
rs1009203364 3310 dbSNP
rs1164324203 3310 dbSNP
rs981419878 3310 dbSNP
rs886060039 3319 dbSNP
rs915999144 3320 dbSNP
rs974222136 3328 dbSNP
rs61753512 3330 dbSNP
rs1391712168 3333 dbSNP
rs1384559988 3334 dbSNP
rs1246194123 3338 dbSNP
rs1313777377 3343 dbSNP
rs72558021 3356 dbSNP
rs1353619186 3360 dbSNP
rs1208640424 3363 dbSNP
rs1295579854 3364 dbSNP
rs1456434947 3367 dbSNP
rs564701083 3368 dbSNP
rs1438833288 3370 dbSNP
rs1198427997 3373 dbSNP
rs1236683170 3376 dbSNP
rs1016125872 3377 dbSNP
rs1368015567 3378 dbSNP
rs1471841522 3380 dbSNP
rs983670372 3383 dbSNP
rs544822990 3389 dbSNP
rs1397128995 3390 dbSNP
rs1409241308 3393 dbSNP
rs531438561 3400 dbSNP
rs771678306 3406 dbSNP
rs866205225 3412 dbSNP
rs997194406 3414 dbSNP
rs888927599 3416 dbSNP
rs1442090033 3429 dbSNP
rs886060038 3431 dbSNP
rs1338259101 3451 dbSNP
rs1017685437 3457 dbSNP
rs1178394996 3460 dbSNP
rs886060037 3466 dbSNP
rs1340713750 3469 dbSNP
rs563434701 3477 dbSNP
rs543600868 3480 dbSNP
rs892865724 3482 dbSNP
rs1434184426 3497 dbSNP
rs933250523 3504 dbSNP
rs759203288 3511 dbSNP
rs1053315043 3512 dbSNP
rs901732110 3513 dbSNP
rs766658460 3520 dbSNP
rs1036325883 3526 dbSNP
rs934800853 3528 dbSNP
rs1211320759 3532 dbSNP
rs1487191157 3533 dbSNP
rs907471442 3538 dbSNP
rs1045921477 3542 dbSNP
rs10482714 3550 dbSNP
rs554677509 3554 dbSNP
rs915945691 3558 dbSNP
rs909334932 3559 dbSNP
rs985269874 3565 dbSNP
rs974464737 3568 dbSNP
rs1307073735 3576 dbSNP
rs61754801 3580 dbSNP
rs927473254 3585 dbSNP
rs908595289 3615 dbSNP
rs1325322772 3625 dbSNP
rs983298977 3627 dbSNP
rs749835246 3631 dbSNP
rs758125652 3634 dbSNP
rs1224511115 3635 dbSNP
rs981579203 3645 dbSNP
rs1343162410 3651 dbSNP
rs971648141 3657 dbSNP
rs1262563417 3664 dbSNP
rs1487996238 3668 dbSNP
rs950499221 3672 dbSNP
rs1191503947 3683 dbSNP
rs10482715 3685 dbSNP
rs778367837 3688 dbSNP
rs1375683422 3693 dbSNP
rs1298896100 3696 dbSNP
rs1421660410 3697 dbSNP
rs1020545590 3711 dbSNP
rs1359403913 3711 dbSNP
rs1417310415 3712 dbSNP
rs559320566 3715 dbSNP
rs987839678 3716 dbSNP
rs144703328 3717 dbSNP
rs754093843 3719 dbSNP
rs1466855213 3724 dbSNP
rs1379756995 3732 dbSNP
rs773429474 3735 dbSNP
rs1017299736 3736 dbSNP
rs1011641543 3738 dbSNP
rs1200501846 3743 dbSNP
rs1431101366 3747 dbSNP
rs72542771 3751 dbSNP
rs1241507781 3760 dbSNP
rs772052566 3760 dbSNP
rs1193743288 3764 dbSNP
rs1001039844 3775 dbSNP
rs888841919 3775 dbSNP
rs182028115 3776 dbSNP
rs1031803139 3794 dbSNP
rs998980865 3796 dbSNP
rs907420365 3803 dbSNP
rs1045865422 3805 dbSNP
rs11552272 3825 dbSNP
rs1215832056 3830 dbSNP
rs6198 3833 dbSNP
rs1365619187 3846 dbSNP
rs901809228 3852 dbSNP
rs1257541564 3860 dbSNP
rs1038389648 3867 dbSNP
rs941331534 3868 dbSNP
rs908635118 3875 dbSNP
rs10482716 3877 dbSNP
rs1238190969 3878 dbSNP
rs61754802 3880 dbSNP
rs1360224760 3881 dbSNP
rs1338585534 3883 dbSNP
rs1263610602 3893 dbSNP
rs1481539211 3900 dbSNP
rs887758219 3918 dbSNP
rs1237291792 3920 dbSNP
rs1456195399 3932 dbSNP
rs547090292 3936 dbSNP
rs4518436 3937 dbSNP
rs527551440 3940 dbSNP
rs1404716643 3941 dbSNP
rs937436323 3944 dbSNP
rs1465908554 3945 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acGGAGACAGGUCGACACAUu 5'
            :|| | |:   ||||||| 
Target 5' aaUCUAUAUUAUACUGUGUAu 3'
 		17 - 37
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000394464.2 | 3UTR | CUAUAUAAUGGGGACAAAUCUAUAUUAUACUGUGUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
126 hsa-miR-4672 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060585 CCND1 cyclin D1 2 2
MIRT063968 ZNF678 zinc finger protein 678 2 2
MIRT078062 PCTP phosphatidylcholine transfer protein 2 2
MIRT084370 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT095611 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT096511 BRIX1 BRX1, biogenesis of ribosomes 2 4
MIRT121793 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT129470 CHEK1 checkpoint kinase 1 2 4
MIRT149009 PKN2 protein kinase N2 2 2
MIRT169592 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT177382 WAC WW domain containing adaptor with coiled-coil 2 4
MIRT214659 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT322680 BAG4 BCL2 associated athanogene 4 2 4
MIRT332490 CD81 CD81 molecule 2 6
MIRT338986 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT353814 PCBP1 poly(rC) binding protein 1 2 2
MIRT449368 ANTXR2 anthrax toxin receptor 2 2 2
MIRT459867 KIAA1191 KIAA1191 2 2
MIRT466272 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT467049 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT469925 PTPRJ protein tyrosine phosphatase, receptor type J 2 6
MIRT470361 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT471076 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472472 NAP1L1 nucleosome assembly protein 1 like 1 2 4
MIRT478137 DHX33 DEAH-box helicase 33 2 2
MIRT479414 CDKN1B cyclin dependent kinase inhibitor 1B 2 4
MIRT496523 ID2 inhibitor of DNA binding 2, HLH protein 2 2
MIRT510371 ZNF703 zinc finger protein 703 2 6
MIRT512861 TESK2 testis-specific kinase 2 2 2
MIRT512974 PPP1R14C protein phosphatase 1 regulatory inhibitor subunit 14C 2 4
MIRT513313 ASB6 ankyrin repeat and SOCS box containing 6 2 4
MIRT521882 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 4
MIRT522184 NR2C2 nuclear receptor subfamily 2 group C member 2 2 4
MIRT528381 TRAF3IP1 TRAF3 interacting protein 1 2 2
MIRT532412 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT533027 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT533438 TRPC5 transient receptor potential cation channel subfamily C member 5 2 2
MIRT533919 TATDN2 TatD DNase domain containing 2 2 2
MIRT537568 ESYT2 extended synaptotagmin 2 2 2
MIRT538955 BMP2K BMP2 inducible kinase 2 2
MIRT539042 ATXN1L ataxin 1 like 2 4
MIRT539626 CD19 CD19 molecule 2 8
MIRT545720 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT546013 WDR26 WD repeat domain 26 2 4
MIRT549703 RBM23 RNA binding motif protein 23 2 4
MIRT551162 UBTF upstream binding transcription factor, RNA polymerase I 2 4
MIRT552078 MESDC2 mesoderm development LRP chaperone 2 4
MIRT552530 ZIC5 Zic family member 5 2 2
MIRT552670 YY1 YY1 transcription factor 2 4
MIRT554225 SLC24A2 solute carrier family 24 member 2 2 2
MIRT554356 SFXN5 sideroflexin 5 2 4
MIRT555279 PPTC7 PTC7 protein phosphatase homolog 2 4
MIRT555642 PHF13 PHD finger protein 13 2 2
MIRT558365 DIDO1 death inducer-obliterator 1 2 4
MIRT558630 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT559238 BEND4 BEN domain containing 4 2 2
MIRT559556 ARF6 ADP ribosylation factor 6 2 2
MIRT561686 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT562668 ANKRD40 ankyrin repeat domain 40 2 2
MIRT565689 SESN3 sestrin 3 2 2
MIRT566238 PTBP3 polypyrimidine tract binding protein 3 2 2
MIRT567699 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT573858 C9orf78 chromosome 9 open reading frame 78 2 2
MIRT574156 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT575869 Kif5c kinesin family member 5C 2 3
MIRT576180 Muc15 mucin 15 2 5
MIRT606886 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 6
MIRT606908 ZBTB20 zinc finger and BTB domain containing 20 2 4
MIRT606914 MUC15 mucin 15, cell surface associated 2 7
MIRT607250 FAM216B family with sequence similarity 216 member B 2 4
MIRT607562 KIF5C kinesin family member 5C 2 3
MIRT609075 SMIM15 small integral membrane protein 15 2 6
MIRT609160 ZNF415 zinc finger protein 415 2 4
MIRT609360 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT609799 ZDHHC17 zinc finger DHHC-type containing 17 2 2
MIRT610368 GRIPAP1 GRIP1 associated protein 1 2 2
MIRT611341 KIAA2018 upstream transcription factor family member 3 2 4
MIRT611732 PRSS23 protease, serine 23 2 4
MIRT611826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT611906 NNT nicotinamide nucleotide transhydrogenase 2 2
MIRT612377 TFCP2 transcription factor CP2 2 4
MIRT613482 LYRM7 LYR motif containing 7 2 2
MIRT613641 DUSP18 dual specificity phosphatase 18 2 4
MIRT613822 LANCL3 LanC like 3 2 4
MIRT613863 CBY3 chibby family member 3 2 4
MIRT613871 TMEM51 transmembrane protein 51 2 2
MIRT614688 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT615044 DCP2 decapping mRNA 2 2 2
MIRT616872 ARPC1B actin related protein 2/3 complex subunit 1B 2 4
MIRT617012 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT618524 CCDC174 coiled-coil domain containing 174 2 2
MIRT621827 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT622108 SPRY4 sprouty RTK signaling antagonist 4 2 6
MIRT623111 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT626102 GNAI1 G protein subunit alpha i1 2 4
MIRT626416 ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 2 2
MIRT627656 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component 2 2
MIRT628333 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2 2
MIRT629334 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 2
MIRT630426 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT630707 GDNF glial cell derived neurotrophic factor 2 2
MIRT632568 POLQ DNA polymerase theta 2 2
MIRT632798 KIAA2022 neurite extension and migration factor 2 2
MIRT634125 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT634299 SP1 Sp1 transcription factor 2 2
MIRT634406 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT636827 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT638270 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT643060 CCDC149 coiled-coil domain containing 149 2 2
MIRT646160 SLC22A1 solute carrier family 22 member 1 2 2
MIRT648243 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 2 2
MIRT663402 SYT17 synaptotagmin 17 2 6
MIRT666042 STON2 stonin 2 2 2
MIRT670698 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT672337 TMEM79 transmembrane protein 79 2 4
MIRT672628 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT685229 F2RL1 F2R like trypsin receptor 1 2 2
MIRT693225 KIAA0907 KIAA0907 2 4
MIRT696142 RAB11FIP3 RAB11 family interacting protein 3 2 2
MIRT697908 TXNRD1 thioredoxin reductase 1 2 2
MIRT705315 ATP9A ATPase phospholipid transporting 9A (putative) 2 2
MIRT712264 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT714080 ZNF532 zinc finger protein 532 2 2
MIRT715104 SORBS3 sorbin and SH3 domain containing 3 2 2
MIRT722237 RBM41 RNA binding motif protein 41 2 2
MIRT725113 SYNRG synergin gamma 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4672 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4672 Paclitaxel 36314 NSC125973 approved sensitive High Endometrial Serous Carcinoma cell line (USPC1)
hsa-miR-4672 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-mir-4672 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-4672 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4672 Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4672 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (HCT116)
hsa-miR-4672 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4672 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4672 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4672 Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-4672 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4672 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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