miRTarBase - #MIRT096244


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pre-miRNA Information
pre-miRNA hsa-mir-646   
Genomic Coordinates chr20: 60308474 - 60308567
Synonyms MIRN646, hsa-mir-646, MIR646
Description Homo sapiens miR-646 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-646
Sequence 61| AAGCAGCUGCCUCUGAGGC |79
Evidence Experimental
Experiments SAGE
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750684400 6 dbSNP
rs112880289 10 dbSNP
rs553679341 11 dbSNP
rs941692683 13 dbSNP
rs6513497 14 dbSNP
rs1431341059 18 dbSNP
rs1479355932 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CANX   
Synonyms CNX, IP90, P90
Description calnexin
Transcript NM_001024649   
Other Transcripts NM_001746   
Expression
Putative miRNA Targets on CANX
3'UTR of CANX
(miRNA target sites are highlighted)		 
>CANX|NM_001024649|3'UTR
   1 AACAATCTTAAGAGCTTGATCTGTGATTTCTTCTCCCTCCTCCCCTGCAAGAGTGGTCCTAGGAGAGGACCTGGCACACC
  81 TTAGGTTGACATTCAGAAAACTTCAAGACATCACCATCAGCAGGCTCCAGTTGAACACTAGTCTGTGTAACTTTAAACAT
 161 CTAGCAGTAAATACTTGCAGTTGTGATATAAAGGACCCTGTTTCTGTAGAAAAGAAAACATTTAACATAATGGTTGTGAA
 241 ATGTAACATGAAGCAAACTAACTTTTTTTTTTTTAACATCTTTGTTTTTAAAATAGAATGATAGAACTTTGCCAGTCTTT
 321 AAGATCTTGGCTTAATTTAATGTATTAATCTGTTTGTGCAAACATAATACCACCATTTAAAAATGTTAGGGAGATGAGTT
 401 GCAGTTTTTATAATAGATTTTTTTTAAAGTTTGGTATTGTAAAACATTCACACCTCTGTCCCTCAAAATTGATAATTACG
 481 TTTAAAGTGCAGTCATTTGTGGTTAGAATCTTGTTTTGTTTGCTTCCATTATTGAGTTCCTCCTAAGGAAATTGAGGAGA
 561 GGGACTGAATAGAAGCCCAAATTCATATAAAAGTTGCGTTTAAGTTGTATTAAAAATAGATATATAAGAAAAAATTCTTT
 641 CACTTGATGTTTGTTAGACCAGAAAGTGTGTGTGTTCTGTAGCTCAGTTCCCAGACAGCTTTTTAGGTAGTGGAGGAGGT
 721 GGCTTCATGTGGCACTTGGGCATTTATATTCCACTTGGGAGGGTCAGGCTGTGGCCTTCTGGAGCAGGTGGCTTGTTAAG
 801 GAATGCTAGCAGGGCATGGCACGTGAGCTCCGGAATAGATGTCTTCATCACTTCTTCCACTGTGTGTTGACACTGTTTTC
 881 CTTACCTATTTCCTCAGATCCCCAGCTTTCTCCTCTGCTATGCATTTTCTTCACAGTGCAGCTTGCAGTCCGTTGCTGAA
 961 AATGATTATAAGCCCTGCATAATGTTAAGCTTTATTGTGATTACGTGTATGTTTCTTCTTTCTTTTAAGCAGACCCATAC
1041 CTTTCCAGGGTCAAAGTACAGAATAGAATACATTGATACAAAGTACAGAAAAATACTTTGATTTTTATCCATTTCTTTTA
1121 CTCTGTGTAAAGACTTGAGAAGTCTAATTCACAGGCAAACCAATACAGAATTGACTGCAGTTGAACAGACTAGAAGTATT
1201 TGTGGGAGGAGTGACATGAAGCATGAGTTATCTGATTTTTTTTGTAGCTGCTATATATTTTAAGCCTTCATTTGCAATTC
1281 ATGTAACAGTTGTGTCATAAATTACACAATAAAGCAGTCCTGTTCAAATTTTTTTTTAACGTGGCTTGTAGAATTTTTAA
1361 AAAAGTGATCTTAGGTTTGTTTTTTCATGCGGGATGCAGATGGGTGCTATCAGAGCCTCTCCCACACCACTATAGTGTAA
1441 TAATGTTATTATTACTCTACACTGAAACGTATTCAGAGTTAGATATTATTTTAGCTTCAGTTGTTCTTTAGAGGCTTTCA
1521 AATGTACCGATGATACTGTTTCTTGCACTGAATATATAAACACTCCACAGTGTTTATATTGGGAAGATATTGGGAAGGAA
1601 ATATATTTGTAAAAGATGAAGGCTGTATCTATTTTTTTTTCTTTTTAAAGTTTGTTCACTTAAATTCTTTTGAGGATGGG
1681 ATGTATTTTTCTTGCTGTTCAGTGCTTTTTCCTTTTCATCTGTTGTTCTGTGGTCACAGTGACCTTAGCTACATAGCAGA
1761 CTTTCCCAAATGTATTGATTACAAATAAACAGTTGTTACTTAGCAAGACCTGAAAATATGTCTGCAGGTTTCTCCTTGAA
1841 GCAAATGTGTGGGATCATTGCATTTCCAGAAATCTGCCTCCTTCACCCTCCGTTGACAGTATATGTCATGCCTCACTTTC
1921 TTCTAGCTGAGCTTTAAATCATTAGAGCTTAAATTGTCAGATCGTTCATTGCCTTTCCAGGGTTATTTAGTAAAGTTTGT
2001 TGAAAACAAAAACGCCTTTTCTTGGTTCTTTTTTCAGTTATTTTGAAGGTCCAGCATCCTGATTAAATGTCTGACACATT
2081 AATGAATGACCAGCAGCAGCTTTCAGCTCTTAAAAAGACACTTATATTTTGATTTTACATGCTGGTTACCTGTTCCATTG
2161 TTGTCAAATGCCCACTCTCCATCAGATGTGTTCCTCCATTTTCTTATCCACAAAGTACTCCTCACTTTTCAATTTGTCAT
2241 GTTACTAAATGGTGTTACATTAAAGCCCTGTGTTAAGTGTCTGCTTTTGACTGAATTTCTTCATAGTAACCTTCAGTGTG
2321 TGTGTGTGACTATGTTCAATTAGTGGGTTGATCTTCGTATAATTGGCCACTATGTGAGAGTTCACTACTAGGCAGAAACT
2401 ATTATGGACAGTGAAATAATGACTTTTATCTCACCACGTGAGTTTGATGCAGTCTTTTCTGTCTAGCCCTTGCCTCTTCC
2481 TGCCCATGTGATTGCGGTGCAGTAGTTTCTGTTGTATAATAGTGTGGACAGCAGCTCAGAAAAGGAGGGAATGCTACTGA
2561 TAATTTGTAGATAATATTCTTTAAGACTTAGGGGAACCATTGAACTTTGAAATTTTTATTAGAAAATTATTTGTTCAGAA
2641 TCAGACTCCATTATTTTACATATACTTAAATACTTTAGGGGTATTTTTGAAAGTTAGCCCAGTTTTTTATGTGCTATTAA
2721 ATTTTTAGATTACATACTAAAGAAAAGTATGTACACAGAATGTAGTGCTCCTAGTTACTATTTTTTCTATTAAGAAATAG
2801 TTTAGTTCTGGTGTAAAATTTGTTTGAATGCTAAAAAAAAAAAAGCAGGACTGCATTATGGCACTTTTGCCTTGGTGGCC
2881 CACTTTCTCCATTTAAAACATTAGGATTTGTATTTTTCTGCTGCGTTTGTATGAAGACATATTTGATTGTTGTTTTCTCT
2961 TGATTTTAAAATAAAACCTCATGAGCCCTAGTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cggagucucCGUCGACGAa 5'
                   |:||||||| 
Target 5' attttttttGTAGCTGCTa 3'
 1235 - 1253 146.00 -11.80
2 
miRNA  3' cgGAGUCUCCGUCGACGAa 5'
            :|:||   |||:||:| 
Target 5' atTTTAGCTTCAGTTGTTc 3'
 1488 - 1506 121.00 -11.00
3 
miRNA  3' cggagucucCGUCGACGAa 5'
                   ||||| ||| 
Target 5' gaatgaccaGCAGCAGCTt 3'
 2084 - 2102 118.00 -10.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30151318 34 COSMIC
COSN30174756 72 COSMIC
COSN30530215 105 COSMIC
COSN28162017 131 COSMIC
COSN31484304 144 COSMIC
COSN30128410 181 COSMIC
COSN23000113 261 COSMIC
COSN27340002 275 COSMIC
COSN22246427 598 COSMIC
COSN31529224 638 COSMIC
COSN6285503 643 COSMIC
COSN22251617 776 COSMIC
COSN31564624 785 COSMIC
COSN30539939 792 COSMIC
COSN14764560 805 COSMIC
COSN31526431 863 COSMIC
COSN8492470 881 COSMIC
COSN26648464 886 COSMIC
COSN31592044 1001 COSMIC
COSN31516193 1116 COSMIC
COSN28806860 1138 COSMIC
COSN31483124 1151 COSMIC
COSN26644015 1189 COSMIC
COSN21397536 1254 COSMIC
COSN26151045 1256 COSMIC
COSN4846657 1264 COSMIC
COSN31547461 1301 COSMIC
COSN31535069 1328 COSMIC
COSN31553292 1345 COSMIC
COSN31572069 1530 COSMIC
COSN30542298 1555 COSMIC
COSN24301397 1583 COSMIC
COSN31563005 1595 COSMIC
COSN29593704 1641 COSMIC
COSN20102274 1651 COSMIC
COSN20490452 1652 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1328373866 4 dbSNP
rs1428761525 5 dbSNP
rs772806133 6 dbSNP
rs1348661098 10 dbSNP
rs762698553 11 dbSNP
rs766069353 13 dbSNP
rs372523907 19 dbSNP
rs751157767 21 dbSNP
rs200489430 23 dbSNP
rs756569666 25 dbSNP
rs1444878876 27 dbSNP
rs764334946 29 dbSNP
rs754419547 32 dbSNP
rs1455183229 34 dbSNP
rs376853046 36 dbSNP
rs181704268 40 dbSNP
rs1319360171 43 dbSNP
rs745883773 45 dbSNP
rs201943117 48 dbSNP
rs1387557194 52 dbSNP
rs369412541 59 dbSNP
rs747165153 65 dbSNP
rs944181137 72 dbSNP
rs186409621 73 dbSNP
rs1301170965 74 dbSNP
rs1370093725 85 dbSNP
rs866118322 87 dbSNP
rs901633083 92 dbSNP
rs776237617 94 dbSNP
rs1348246475 95 dbSNP
rs1355106462 99 dbSNP
rs748124474 105 dbSNP
rs1032034423 109 dbSNP
rs769785906 111 dbSNP
rs189975498 115 dbSNP
rs1189369088 116 dbSNP
rs762608998 117 dbSNP
rs1251717844 121 dbSNP
rs1433157006 122 dbSNP
rs1265289040 128 dbSNP
rs1208014256 138 dbSNP
rs765802032 141 dbSNP
rs1365976320 144 dbSNP
rs1468923584 146 dbSNP
rs1158715934 150 dbSNP
rs1395424154 162 dbSNP
rs1463097587 164 dbSNP
rs72809773 165 dbSNP
rs1011520237 166 dbSNP
rs879376573 172 dbSNP
rs1019379175 174 dbSNP
rs1309040594 179 dbSNP
rs1022862099 184 dbSNP
rs965091180 190 dbSNP
rs1320972142 200 dbSNP
rs1386749626 201 dbSNP
rs975287020 208 dbSNP
rs969889834 216 dbSNP
rs1428218161 221 dbSNP
rs1002669493 225 dbSNP
rs1466521288 234 dbSNP
rs1295001965 249 dbSNP
rs952686367 262 dbSNP
rs1267956138 263 dbSNP
rs1324485281 263 dbSNP
rs1451015095 263 dbSNP
rs397724671 263 dbSNP
rs530585026 263 dbSNP
rs984432793 263 dbSNP
rs766797346 271 dbSNP
rs1385835189 275 dbSNP
rs77294431 275 dbSNP
rs75878741 277 dbSNP
rs961517580 281 dbSNP
rs1320819662 285 dbSNP
rs973213216 296 dbSNP
rs919962315 299 dbSNP
rs918011713 305 dbSNP
rs949446019 314 dbSNP
rs1231878407 318 dbSNP
rs1299707234 325 dbSNP
rs1285758681 327 dbSNP
rs1333160810 332 dbSNP
rs1408476436 336 dbSNP
rs1370361482 345 dbSNP
rs952690544 355 dbSNP
rs1411905361 363 dbSNP
rs1288207090 364 dbSNP
rs564169084 365 dbSNP
rs1172122883 368 dbSNP
rs1478392645 369 dbSNP
rs1327165660 371 dbSNP
rs1431449800 372 dbSNP
rs1201514969 377 dbSNP
rs776200196 387 dbSNP
rs375900004 390 dbSNP
rs780805419 403 dbSNP
rs1045259381 404 dbSNP
rs1210743231 405 dbSNP
rs1250857340 406 dbSNP
rs1268837184 413 dbSNP
rs911440805 415 dbSNP
rs370981397 418 dbSNP
rs905345531 418 dbSNP
rs1488304736 426 dbSNP
rs1341719529 427 dbSNP
rs1054444207 428 dbSNP
rs181194158 435 dbSNP
rs1041250887 440 dbSNP
rs866242854 454 dbSNP
rs1227125544 457 dbSNP
rs934451957 459 dbSNP
rs1433501286 461 dbSNP
rs567394136 462 dbSNP
rs1289422976 471 dbSNP
rs1444797598 480 dbSNP
rs764606847 481 dbSNP
rs1409582280 484 dbSNP
rs900942917 518 dbSNP
rs947003756 521 dbSNP
rs1156979569 523 dbSNP
rs1455625384 528 dbSNP
rs1473531397 528 dbSNP
rs1411134156 533 dbSNP
rs1177642086 546 dbSNP
rs1471044340 547 dbSNP
rs14539 549 dbSNP
rs1159337753 557 dbSNP
rs1186428894 564 dbSNP
rs1461459967 565 dbSNP
rs1028188003 568 dbSNP
rs1206257520 579 dbSNP
rs1329137032 581 dbSNP
rs1269315900 582 dbSNP
rs905816008 586 dbSNP
rs1393067838 588 dbSNP
rs1003192490 598 dbSNP
rs528901989 599 dbSNP
rs983929435 600 dbSNP
rs1393359182 605 dbSNP
rs1318690371 620 dbSNP
rs1434464858 620 dbSNP
rs1389387516 621 dbSNP
rs149563069 624 dbSNP
rs752285763 639 dbSNP
rs896961023 641 dbSNP
rs1162403012 647 dbSNP
rs1288108927 659 dbSNP
rs536440692 663 dbSNP
rs994280465 672 dbSNP
rs1186197841 680 dbSNP
rs1026996706 686 dbSNP
rs1464052506 689 dbSNP
rs1242126806 691 dbSNP
rs1349243427 699 dbSNP
rs1230751609 700 dbSNP
rs868476341 704 dbSNP
rs866137408 705 dbSNP
rs1803234 720 dbSNP
rs1247161347 729 dbSNP
rs1361949512 737 dbSNP
rs1242908382 738 dbSNP
rs1267398853 740 dbSNP
rs1488689125 741 dbSNP
rs1018223093 743 dbSNP
rs1432857210 748 dbSNP
rs965629281 751 dbSNP
rs41285553 756 dbSNP
rs1425059514 760 dbSNP
rs369969678 769 dbSNP
rs1484023583 777 dbSNP
rs1166343538 781 dbSNP
rs527870998 783 dbSNP
rs936837897 786 dbSNP
rs552400468 791 dbSNP
rs1187731391 803 dbSNP
rs7566 805 dbSNP
rs531724836 806 dbSNP
rs1421494063 807 dbSNP
rs79607635 823 dbSNP
rs892737311 824 dbSNP
rs1204745747 825 dbSNP
rs945588012 828 dbSNP
rs1297881340 832 dbSNP
rs539324552 833 dbSNP
rs1365484313 839 dbSNP
rs558503316 845 dbSNP
rs1282564867 850 dbSNP
rs1405419928 851 dbSNP
rs1367230784 859 dbSNP
rs1305906253 861 dbSNP
rs1428745406 861 dbSNP
rs549884638 862 dbSNP
rs757110209 873 dbSNP
rs900826791 874 dbSNP
rs1428689393 879 dbSNP
rs1430957236 880 dbSNP
rs1307861159 882 dbSNP
rs1369059337 884 dbSNP
rs1423789464 885 dbSNP
rs996646185 898 dbSNP
rs1309112550 902 dbSNP
rs947114974 903 dbSNP
rs1028489578 907 dbSNP
rs144218225 914 dbSNP
rs1181885454 918 dbSNP
rs1481116681 921 dbSNP
rs1394299365 924 dbSNP
rs1213658217 930 dbSNP
rs1314940398 941 dbSNP
rs1208199823 950 dbSNP
rs1005808092 951 dbSNP
rs148801233 952 dbSNP
rs1224076827 953 dbSNP
rs938634536 964 dbSNP
rs1227921926 974 dbSNP
rs1286277518 990 dbSNP
rs961298415 997 dbSNP
rs1373707024 1002 dbSNP
rs1272261290 1005 dbSNP
rs759495964 1006 dbSNP
rs553775032 1008 dbSNP
rs1358103544 1013 dbSNP
rs1176483143 1014 dbSNP
rs1236774326 1018 dbSNP
rs1410386297 1043 dbSNP
rs1482232347 1047 dbSNP
rs1158976157 1049 dbSNP
rs1024966165 1050 dbSNP
rs749412590 1051 dbSNP
rs1183154702 1060 dbSNP
rs755249769 1061 dbSNP
rs994372412 1062 dbSNP
rs1483023068 1065 dbSNP
rs778816636 1066 dbSNP
rs980757668 1071 dbSNP
rs1027029203 1073 dbSNP
rs1325652104 1074 dbSNP
rs888565579 1085 dbSNP
rs1266174545 1103 dbSNP
rs926708777 1119 dbSNP
rs1166281092 1122 dbSNP
rs1388726681 1129 dbSNP
rs566013283 1135 dbSNP
rs6639 1138 dbSNP
rs1393968459 1144 dbSNP
rs1171734592 1145 dbSNP
rs989666816 1150 dbSNP
rs772199194 1153 dbSNP
rs914056460 1155 dbSNP
rs965736435 1156 dbSNP
rs185246993 1159 dbSNP
rs1304717040 1169 dbSNP
rs977046017 1172 dbSNP
rs879508588 1181 dbSNP
rs773705930 1182 dbSNP
rs1295616948 1186 dbSNP
rs1367113779 1195 dbSNP
rs747520242 1199 dbSNP
rs989689533 1201 dbSNP
rs1228953415 1205 dbSNP
rs915403210 1217 dbSNP
rs947146068 1232 dbSNP
rs1204519774 1236 dbSNP
rs1476170306 1236 dbSNP
rs922304184 1238 dbSNP
rs979828691 1239 dbSNP
rs1310419081 1245 dbSNP
rs932315021 1253 dbSNP
rs1049373770 1256 dbSNP
rs1315314052 1258 dbSNP
rs926962828 1281 dbSNP
rs1212113093 1297 dbSNP
rs771232263 1304 dbSNP
rs73342141 1310 dbSNP
rs1383309050 1312 dbSNP
rs1057055544 1317 dbSNP
rs1292205992 1324 dbSNP
rs183274640 1326 dbSNP
rs1014164616 1329 dbSNP
rs918460598 1332 dbSNP
rs11552423 1337 dbSNP
rs555502467 1341 dbSNP
rs564131238 1342 dbSNP
rs201052762 1349 dbSNP
rs1024177877 1354 dbSNP
rs929907592 1360 dbSNP
rs1193970394 1372 dbSNP
rs969966922 1374 dbSNP
rs1263760896 1376 dbSNP
rs1449696067 1378 dbSNP
rs12054833 1381 dbSNP
rs1292165136 1386 dbSNP
rs759072913 1391 dbSNP
rs573515559 1392 dbSNP
rs1039734679 1395 dbSNP
rs1033662613 1401 dbSNP
rs1424879234 1404 dbSNP
rs901183240 1407 dbSNP
rs958388305 1410 dbSNP
rs1328772645 1432 dbSNP
rs115376279 1433 dbSNP
rs1404830208 1434 dbSNP
rs1031000398 1437 dbSNP
rs779001986 1438 dbSNP
rs1178819405 1442 dbSNP
rs114977196 1449 dbSNP
rs186072913 1450 dbSNP
rs545971791 1456 dbSNP
rs1396028580 1462 dbSNP
rs976881362 1467 dbSNP
rs969519563 1469 dbSNP
rs762507828 1470 dbSNP
rs922856192 1481 dbSNP
rs1431722035 1489 dbSNP
rs927000096 1493 dbSNP
rs1201289600 1499 dbSNP
rs1481902248 1503 dbSNP
rs10387 1510 dbSNP
rs909534750 1514 dbSNP
rs1301823307 1516 dbSNP
rs992942401 1527 dbSNP
rs918246096 1529 dbSNP
rs1223484817 1530 dbSNP
rs542417257 1532 dbSNP
rs1285654681 1533 dbSNP
rs1036737033 1539 dbSNP
rs774532512 1539 dbSNP
rs1382695882 1547 dbSNP
rs1206353038 1549 dbSNP
rs896870406 1556 dbSNP
rs1014051618 1557 dbSNP
rs1400194429 1561 dbSNP
rs1175757571 1562 dbSNP
rs3205295 1568 dbSNP
rs1469269152 1570 dbSNP
rs1381496517 1576 dbSNP
rs531792454 1576 dbSNP
rs191672196 1587 dbSNP
rs568582434 1591 dbSNP
rs757733815 1593 dbSNP
rs529271064 1601 dbSNP
rs559502011 1605 dbSNP
rs757273948 1607 dbSNP
rs1001442098 1615 dbSNP
rs909733691 1627 dbSNP
rs1246526803 1631 dbSNP
rs1034127469 1632 dbSNP
rs1240780380 1632 dbSNP
rs200739493 1632 dbSNP
rs183513154 1633 dbSNP
rs11552425 1642 dbSNP
rs1260373076 1642 dbSNP
rs1021054430 1644 dbSNP
rs1444682096 1645 dbSNP
rs565822699 1648 dbSNP
rs976933955 1649 dbSNP
rs1408303635 1650 dbSNP
rs386695662 1650 dbSNP
rs68137334 1650 dbSNP
rs745909899 1650 dbSNP
rs1135225 1651 dbSNP
rs745562437 1651 dbSNP
rs774120287 1651 dbSNP
rs55868831 1652 dbSNP
rs1135233 1653 dbSNP
rs56396231 1654 dbSNP
rs1401531027 1655 dbSNP
rs1323086136 1683 dbSNP
rs922775449 1707 dbSNP
rs188296106 1710 dbSNP
rs112003561 1718 dbSNP
rs1039767337 1722 dbSNP
rs901294953 1727 dbSNP
rs1438263113 1733 dbSNP
rs1303527122 1734 dbSNP
rs985721244 1740 dbSNP
rs1214312047 1744 dbSNP
rs1349859990 1754 dbSNP
rs1285448848 1755 dbSNP
rs745974745 1758 dbSNP
rs1225814560 1762 dbSNP
rs1226475817 1765 dbSNP
rs998276078 1782 dbSNP
rs193007848 1787 dbSNP
rs1246912020 1792 dbSNP
rs1385113366 1798 dbSNP
rs779184219 1804 dbSNP
rs573725317 1816 dbSNP
rs892446841 1827 dbSNP
rs1011179324 1836 dbSNP
rs1350714765 1843 dbSNP
rs1318805007 1848 dbSNP
rs1363424380 1850 dbSNP
rs748387528 1850 dbSNP
rs540646681 1862 dbSNP
rs1162564881 1863 dbSNP
rs560386963 1885 dbSNP
rs577234327 1887 dbSNP
rs1002332403 1892 dbSNP
rs1035191430 1893 dbSNP
rs1450245459 1894 dbSNP
rs1046000960 1901 dbSNP
rs546041302 1902 dbSNP
rs564449987 1903 dbSNP
rs1054377244 1911 dbSNP
rs576221287 1914 dbSNP
rs377378185 1921 dbSNP
rs1414302283 1925 dbSNP
rs1361834880 1926 dbSNP
rs1470520106 1929 dbSNP
rs1259543527 1933 dbSNP
rs1214060245 1961 dbSNP
rs1362673878 1963 dbSNP
rs1162894407 1964 dbSNP
rs370879198 1965 dbSNP
rs1343447085 1970 dbSNP
rs1302266097 1974 dbSNP
rs1424951466 1981 dbSNP
rs1407280416 1992 dbSNP
rs951023892 2000 dbSNP
rs1010922403 2008 dbSNP
rs984011931 2014 dbSNP
rs758406513 2015 dbSNP
rs144960904 2016 dbSNP
rs529425881 2018 dbSNP
rs1479718912 2029 dbSNP
rs1268686167 2032 dbSNP
rs1200587511 2038 dbSNP
rs182647727 2064 dbSNP
rs147950214 2083 dbSNP
rs1249843912 2084 dbSNP
rs1335850654 2085 dbSNP
rs547473358 2090 dbSNP
rs1308179114 2091 dbSNP
rs140130673 2091 dbSNP
rs1220434146 2092 dbSNP
rs1281921796 2094 dbSNP
rs1321304668 2098 dbSNP
rs1358084897 2100 dbSNP
rs934091682 2112 dbSNP
rs1052505413 2118 dbSNP
rs1369377635 2121 dbSNP
rs892473830 2126 dbSNP
rs41285555 2133 dbSNP
rs1354643282 2134 dbSNP
rs962905426 2151 dbSNP
rs1468756479 2161 dbSNP
rs1429194899 2172 dbSNP
rs1135895 2175 dbSNP
rs1177700002 2178 dbSNP
rs1044003910 2181 dbSNP
rs1135903 2186 dbSNP
rs1203652021 2188 dbSNP
rs570004455 2195 dbSNP
rs747469601 2199 dbSNP
rs1135927 2204 dbSNP
rs918235636 2209 dbSNP
rs1135933 2211 dbSNP
rs140149869 2212 dbSNP
rs949832978 2215 dbSNP
rs186833378 2216 dbSNP
rs927159479 2219 dbSNP
rs1313761949 2224 dbSNP
rs1304545102 2225 dbSNP
rs1035622220 2240 dbSNP
rs1473921251 2242 dbSNP
rs937195317 2257 dbSNP
rs1389346156 2260 dbSNP
rs1332872552 2266 dbSNP
rs896629500 2270 dbSNP
rs1054664884 2275 dbSNP
rs112842867 2283 dbSNP
rs1404648650 2288 dbSNP
rs149884719 2292 dbSNP
rs1471221287 2303 dbSNP
rs1362466427 2305 dbSNP
rs1158804489 2311 dbSNP
rs1025359103 2315 dbSNP
rs145062176 2316 dbSNP
rs945926497 2316 dbSNP
rs1181900571 2320 dbSNP
rs1460938156 2324 dbSNP
rs529820660 2325 dbSNP
rs1170422947 2335 dbSNP
rs1204256390 2341 dbSNP
rs951056156 2343 dbSNP
rs983792658 2344 dbSNP
rs1016549410 2346 dbSNP
rs963961204 2358 dbSNP
rs1311017231 2360 dbSNP
rs376986405 2360 dbSNP
rs1029748346 2371 dbSNP
rs1315103153 2384 dbSNP
rs889834279 2391 dbSNP
rs1007072791 2400 dbSNP
rs1288721473 2402 dbSNP
rs1454630624 2405 dbSNP
rs765385174 2408 dbSNP
rs1296338824 2411 dbSNP
rs1444194219 2419 dbSNP
rs1385981839 2422 dbSNP
rs1364930477 2424 dbSNP
rs1425556790 2424 dbSNP
rs1017496079 2426 dbSNP
rs962956492 2429 dbSNP
rs1226736327 2433 dbSNP
rs1287845581 2436 dbSNP
rs1219852754 2438 dbSNP
rs1358262767 2439 dbSNP
rs1291941963 2451 dbSNP
rs1246341933 2457 dbSNP
rs552814991 2460 dbSNP
rs539407718 2469 dbSNP
rs1383217863 2471 dbSNP
rs933809517 2480 dbSNP
rs1340742147 2485 dbSNP
rs1424316552 2488 dbSNP
rs577177584 2490 dbSNP
rs144876317 2496 dbSNP
rs981477322 2497 dbSNP
rs1276629709 2498 dbSNP
rs1460542144 2500 dbSNP
rs1372528481 2510 dbSNP
rs927074140 2518 dbSNP
rs958673930 2520 dbSNP
rs1265129491 2524 dbSNP
rs913947983 2528 dbSNP
rs1197004637 2530 dbSNP
rs1490102600 2532 dbSNP
rs1269155442 2533 dbSNP
rs1211202379 2536 dbSNP
rs990020472 2554 dbSNP
rs1462671925 2557 dbSNP
rs1228841993 2558 dbSNP
rs558025689 2561 dbSNP
rs1281838351 2563 dbSNP
rs1043782253 2564 dbSNP
rs945978586 2570 dbSNP
rs576355655 2571 dbSNP
rs1325803622 2573 dbSNP
rs938281582 2577 dbSNP
rs1389850660 2578 dbSNP
rs114544285 2588 dbSNP
rs1168550303 2595 dbSNP
rs1466132813 2597 dbSNP
rs1190340099 2613 dbSNP
rs1425677546 2620 dbSNP
rs1373397401 2628 dbSNP
rs1174089762 2634 dbSNP
rs1477672988 2637 dbSNP
rs896656273 2649 dbSNP
rs923142630 2651 dbSNP
rs1200587736 2657 dbSNP
rs1435683784 2659 dbSNP
rs993642959 2664 dbSNP
rs1195859022 2665 dbSNP
rs1458665244 2667 dbSNP
rs1026897572 2668 dbSNP
rs1261830454 2671 dbSNP
rs886895178 2677 dbSNP
rs1051505277 2680 dbSNP
rs1324755157 2683 dbSNP
rs1276944927 2684 dbSNP
rs750700687 2692 dbSNP
rs140788068 2698 dbSNP
rs1007367960 2709 dbSNP
rs1449091409 2711 dbSNP
rs1403922917 2715 dbSNP
rs1038534006 2718 dbSNP
rs1436798120 2721 dbSNP
rs1425656725 2722 dbSNP
rs898661124 2739 dbSNP
rs1327350877 2740 dbSNP
rs1362857273 2743 dbSNP
rs1233187315 2745 dbSNP
rs994420377 2749 dbSNP
rs1025857102 2750 dbSNP
rs191252409 2756 dbSNP
rs1273528149 2758 dbSNP
rs1443479118 2772 dbSNP
rs1281242621 2792 dbSNP
rs972024241 2798 dbSNP
rs1002558472 2810 dbSNP
rs1280368588 2812 dbSNP
rs1242519017 2816 dbSNP
rs1204469407 2819 dbSNP
rs777048039 2821 dbSNP
rs1451884418 2825 dbSNP
rs1359657956 2826 dbSNP
rs1267572871 2829 dbSNP
rs1034410354 2832 dbSNP
rs1336008926 2832 dbSNP
rs1383909136 2833 dbSNP
rs1394033037 2833 dbSNP
rs35136597 2833 dbSNP
rs1182433188 2834 dbSNP
rs1473452972 2844 dbSNP
rs1239733230 2846 dbSNP
rs1191589354 2854 dbSNP
rs532548014 2856 dbSNP
rs1463753700 2863 dbSNP
rs1219119971 2869 dbSNP
rs770112629 2871 dbSNP
rs1291201622 2873 dbSNP
rs1029545564 2879 dbSNP
rs1246797945 2879 dbSNP
rs1381343415 2880 dbSNP
rs955386216 2886 dbSNP
rs988030075 2888 dbSNP
rs913729221 2890 dbSNP
rs1450760961 2891 dbSNP
rs559899363 2896 dbSNP
rs555900257 2904 dbSNP
rs763303909 2927 dbSNP
rs926623243 2930 dbSNP
rs1415267225 2938 dbSNP
rs762696500 2938 dbSNP
rs923196525 2939 dbSNP
rs775702526 2943 dbSNP
rs933210275 2943 dbSNP
rs533358549 2944 dbSNP
rs1489940033 2947 dbSNP
rs1268451787 2952 dbSNP
rs1222521889 2960 dbSNP
rs551847501 2963 dbSNP
rs768223128 2965 dbSNP
rs911201592 2970 dbSNP
rs937993689 2979 dbSNP
rs1212787698 2981 dbSNP
rs942834473 2992 dbSNP
rs1278681262 2997 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 821.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cggagucucCGUCGACGAa 5'
                   |:||||||| 
Target 5' auuuuuuuuGUAGCUGCUa 3'
 		2 - 20
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001746 | 3UTR | AAUUCACAGGCAAACCAAUACAGAAUUGACUGCAGUUGAACAGACUAGAAGUAUUUGUGGGAGGAGUGACAUGAAGCAUGAGUUAUCUGAUUUUUUUUGUAGCUGCUAUAUAUUUUAAGCCUUCAUUUGCAAUUCAUGUAACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001746 | 3UTR | CAAACCAAUACAGAAUUGACUGCAGUUGAACAGACUAGAAGUAUUUGUGGGAGGAGUGACAUGAAGCAUGAGUUAUCUGAUUUUUUUUGUAGCUGCUAUAUAUUUUAAGCCUUCAUUUGCAAUUCAUGUAACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001746 | 3UTR | CACAGGCAAACCAAUACAGAAUUGACUGCAGUUGAACAGACUAGAAGUAUUUGUGGGAGGAGUGACAUGAAGCAUGAGUUAUCUGAUUUUUUUUGUAGCUGCUAUAUAUUUUAAGCCUUCAUUUGCAAUUCAUGUAACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001746 | 3UTR | CACAGGCAAACCAAUACAGAAUUGACUGCAGUUGAACAGACUAGAAGUAUUUGUGGGAGGAGUGACAUGAAGCAUGAGUUAUCUGAUUUUUUUUGUAGCUGCUAUAUAUUUUAAGCCUUCAUUUGCAAUUCAUGUAACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001746 | 3UTR | CACAGGCAAACCAAUACAGAAUUGACUGCAGUUGAACAGACUAGAAGUAUUUGUGGGAGGAGUGACAUGAAGCAUGAGUUAUCUGAUUUUUUUUGUAGCUGCUAUAUAUUUUAAGCCUUCAUUUGCAAUUCAUGUAACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001746 | 3UTR | UCACAGGCAAACCAAUACAGAAUUGACUGCAGUUGAACAGACUAGAAGUAUUUGUGGGAGGAGUGACAUGAAGCAUGAGUUAUCUGAUUUUUUUUGUAGCUGCUAUAUAUUUUAAGCCUUCAUUUGCAAUUCAUGUAACAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000247461.4 | 3UTR | GAUUUUUUUUGUAGCUGCUAUAUAUUUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.587 1.3e-3 0.487 7.9e-3 24 Click to see details
GSE28260 Renal cortex and medulla -0.61 1.3e-2 -0.555 2.4e-2 13 Click to see details
GSE14794 Lymphoblastoid cells 0.204 2.7e-2 0.203 2.7e-2 90 Click to see details
GSE21849 B cell lymphoma -0.342 3.5e-2 -0.360 2.8e-2 29 Click to see details
GSE27834 Pluripotent stem cells -0.432 4.7e-2 -0.418 5.4e-2 16 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.243 1.2e-1 -0.090 3.3e-1 25 Click to see details
GSE21687 Ependynoma primary tumors -0.121 1.7e-1 -0.064 3.1e-1 64 Click to see details
GSE32688 Pancreatic cancer -0.115 2.7e-1 -0.142 2.2e-1 32 Click to see details
GSE17306 Multiple myeloma 0.088 2.7e-1 0.508 9.7e-5 49 Click to see details
GSE26953 Aortic valvular endothelial cells 0.115 3.0e-1 -0.147 2.5e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.107 3.1e-1 0.136 2.7e-1 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.1 3.4e-1 -0.388 4.5e-2 20 Click to see details
GSE17498 Multiple myeloma -0.045 3.9e-1 -0.027 4.3e-1 40 Click to see details
GSE38226 Liver fibrosis -0.047 4.2e-1 -0.018 4.7e-1 21 Click to see details
GSE38226 Liver fibrosis -0.047 4.2e-1 -0.018 4.7e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
243 hsa-miR-646 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061535 BTG2 BTG anti-proliferation factor 2 2 4
MIRT064692 CCND2 cyclin D2 2 4
MIRT068834 FNDC3A fibronectin type III domain containing 3A 2 10
MIRT079080 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT092735 SETD5 SET domain containing 5 2 4
MIRT093692 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT096244 CANX calnexin 2 2
MIRT096296 SQSTM1 sequestosome 1 2 4
MIRT098839 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 2 2
MIRT100229 PRR3 proline rich 3 2 4
MIRT156479 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT186378 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT196460 TAOK1 TAO kinase 1 2 2
MIRT211252 FGF2 fibroblast growth factor 2 2 2
MIRT215233 NPM1 nucleophosmin 1 2 4
MIRT215383 CREBRF CREB3 regulatory factor 2 2
MIRT224972 BAG4 BCL2 associated athanogene 4 2 4
MIRT235598 KIF3B kinesin family member 3B 2 2
MIRT249860 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT258407 FOXK1 forkhead box K1 2 2
MIRT269359 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT310455 REST RE1 silencing transcription factor 2 2
MIRT314057 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT322288 SLC39A14 solute carrier family 39 member 14 2 2
MIRT326311 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT329703 SCD stearoyl-CoA desaturase 2 2
MIRT341278 PABPN1 poly(A) binding protein nuclear 1 2 3
MIRT403798 AKIRIN1 akirin 1 2 2
MIRT438549 NOB1 NIN1/PSMD8 binding protein 1 homolog 1 1
MIRT441908 SEPN1 selenoprotein N 2 2
MIRT444125 ZNRF3 zinc and ring finger 3 2 2
MIRT445458 EXT1 exostosin glycosyltransferase 1 2 4
MIRT446500 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT446538 GOLGA8B golgin A8 family member B 2 2
MIRT447770 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT448438 TLL1 tolloid like 1 2 2
MIRT448768 GOLGA8A golgin A8 family member A 2 2
MIRT460749 SRP14 signal recognition particle 14 2 2
MIRT461556 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463163 ZNF367 zinc finger protein 367 2 10
MIRT464234 VEGFA vascular endothelial growth factor A 5 12
MIRT464496 UCK2 uridine-cytidine kinase 2 2 2
MIRT465157 TSC22D2 TSC22 domain family member 2 2 2
MIRT466429 TFAP2A transcription factor AP-2 alpha 2 8
MIRT467395 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT468672 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT469407 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470750 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT471947 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT472468 NAPG NSF attachment protein gamma 2 12
MIRT474571 KLHDC3 kelch domain containing 3 2 2
MIRT477443 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT480541 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT482110 AKT3 AKT serine/threonine kinase 3 2 4
MIRT485206 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT492318 SETD1B SET domain containing 1B 2 4
MIRT497144 TAPBP TAP binding protein 2 2
MIRT498976 ORC4 origin recognition complex subunit 4 2 8
MIRT499112 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT499448 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500089 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500317 ZNF622 zinc finger protein 622 2 8
MIRT500414 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500572 USP53 ubiquitin specific peptidase 53 2 2
MIRT500596 UBN2 ubinuclein 2 2 10
MIRT500797 TLK1 tousled like kinase 1 2 8
MIRT500932 SRPR SRP receptor alpha subunit 2 6
MIRT500946 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501081 SMAD7 SMAD family member 7 2 8
MIRT501515 PPTC7 PTC7 protein phosphatase homolog 2 6
MIRT501879 MOB4 MOB family member 4, phocein 2 8
MIRT502195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT502630 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502650 DCTN5 dynactin subunit 5 2 8
MIRT502914 CDCA4 cell division cycle associated 4 2 8
MIRT502938 CDC37L1 cell division cycle 37 like 1 2 8
MIRT502987 CCND1 cyclin D1 6 3
MIRT503181 AGO2 argonaute 2, RISC catalytic component 2 6
MIRT504532 ZNF620 zinc finger protein 620 2 6
MIRT504715 DLC1 DLC1 Rho GTPase activating protein 2 6
MIRT504967 ZNRF2 zinc and ring finger 2 2 2
MIRT505073 ZFHX4 zinc finger homeobox 4 2 6
MIRT505109 YTHDC1 YTH domain containing 1 2 6
MIRT505342 TMEM245 transmembrane protein 245 2 6
MIRT505389 TMEM100 transmembrane protein 100 2 2
MIRT505681 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506162 PLAG1 PLAG1 zinc finger 2 8
MIRT506185 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506354 NUP50 nucleoporin 50 2 6
MIRT506480 MYO5A myosin VA 2 6
MIRT506833 KIF23 kinesin family member 23 2 6
MIRT507310 FEM1B fem-1 homolog B 2 4
MIRT507847 CCNE2 cyclin E2 2 6
MIRT508670 DIABLO diablo IAP-binding mitochondrial protein 2 4
MIRT509137 ZNF691 zinc finger protein 691 2 4
MIRT509686 ATAD5 ATPase family, AAA domain containing 5 2 4
MIRT512205 C1orf21 chromosome 1 open reading frame 21 2 6
MIRT518087 TRIM35 tripartite motif containing 35 2 2
MIRT518990 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT520964 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT521049 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521192 SBNO1 strawberry notch homolog 1 2 6
MIRT521619 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT522770 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT533754 TMEM184B transmembrane protein 184B 2 2
MIRT534131 SNTB2 syntrophin beta 2 2 4
MIRT537159 GID8 GID complex subunit 8 homolog 2 2
MIRT537812 EFNB2 ephrin B2 2 4
MIRT538108 DDX6 DEAD-box helicase 6 2 2
MIRT540839 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541019 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT541145 PISD phosphatidylserine decarboxylase 2 2
MIRT541387 CDC42SE2 CDC42 small effector 2 2 2
MIRT541422 CBX4 chromobox 4 2 2
MIRT543521 PRSS21 protease, serine 21 2 2
MIRT543794 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT543831 GSG1 germ cell associated 1 2 2
MIRT544961 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545182 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545343 CCDC83 coiled-coil domain containing 83 2 2
MIRT545367 LIN7C lin-7 homolog C, crumbs cell polarity complex component 2 2
MIRT545656 SPARC secreted protein acidic and cysteine rich 2 2
MIRT545678 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545938 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546107 USP48 ubiquitin specific peptidase 48 2 4
MIRT546603 SALL1 spalt like transcription factor 1 2 4
MIRT546628 RTN4 reticulon 4 2 2
MIRT547321 NPTN neuroplastin 2 2
MIRT547660 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547994 HCFC2 host cell factor C2 2 4
MIRT548048 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548098 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548721 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548938 CDK17 cyclin dependent kinase 17 2 2
MIRT549071 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549272 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT549438 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT550462 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550794 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT550819 FAM229B family with sequence similarity 229 member B 2 2
MIRT551537 EMB embigin 2 2
MIRT552031 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552340 ZNF704 zinc finger protein 704 2 2
MIRT552444 ZNF449 zinc finger protein 449 2 2
MIRT553116 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT553448 TOX4 TOX high mobility group box family member 4 2 2
MIRT553725 TBX18 T-box 18 2 2
MIRT553805 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554696 RNF149 ring finger protein 149 2 2
MIRT554831 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT555139 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555269 PRDM4 PR/SET domain 4 2 2
MIRT555312 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT555558 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT556379 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT556669 KMT2D lysine methyltransferase 2D 2 4
MIRT556853 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557476 GPR27 G protein-coupled receptor 27 2 4
MIRT558361 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT558385 DHX33 DEAH-box helicase 33 2 2
MIRT558502 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558515 CTDSPL CTD small phosphatase like 2 4
MIRT558583 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558641 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT558653 CNKSR3 CNKSR family member 3 2 2
MIRT558865 CD2AP CD2 associated protein 2 2
MIRT558888 CCNE1 cyclin E1 2 4
MIRT559002 CA8 carbonic anhydrase 8 2 2
MIRT559149 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559999 RAB3IP RAB3A interacting protein 2 2
MIRT562023 LANCL1 LanC like 1 2 2
MIRT562474 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT562586 CBX2 chromobox 2 2 2
MIRT562595 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT562873 KIAA1456 KIAA1456 2 2
MIRT562989 KIAA0408 KIAA0408 2 4
MIRT563082 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563499 DLGAP3 DLG associated protein 3 2 2
MIRT563892 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564328 CCNT1 cyclin T1 2 2
MIRT564945 XKR7 XK related 7 2 2
MIRT564981 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT566302 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT566701 MTMR3 myotubularin related protein 3 2 2
MIRT566827 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571236 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT571424 RIF1 replication timing regulatory factor 1 2 2
MIRT571637 SKI SKI proto-oncogene 2 2
MIRT571836 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT571962 KIF5B kinesin family member 5B 2 2
MIRT572104 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT572183 CDK6 cyclin dependent kinase 6 2 2
MIRT572720 RBL1 RB transcriptional corepressor like 1 2 2
MIRT574589 N4BP1 NEDD4 binding protein 1 2 2
MIRT575878 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT609979 HERPUD2 HERPUD family member 2 2 2
MIRT612932 GPRIN3 GPRIN family member 3 2 2
MIRT614327 C1orf220 chromosome 1 open reading frame 220 2 2
MIRT614694 TRAK1 trafficking kinesin protein 1 2 2
MIRT618328 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT618456 ZFP30 ZFP30 zinc finger protein 2 4
MIRT621135 EMC7 ER membrane protein complex subunit 7 2 4
MIRT622878 PDE12 phosphodiesterase 12 2 4
MIRT631163 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT632793 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT636731 AFAP1 actin filament associated protein 1 2 2
MIRT649297 IRF8 interferon regulatory factor 8 2 2
MIRT650955 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT653267 SOGA3 SOGA family member 3 2 2
MIRT654665 PSMG1 proteasome assembly chaperone 1 2 2
MIRT656180 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT659252 CUL3 cullin 3 2 2
MIRT663826 NLRP12 NLR family pyrin domain containing 12 2 4
MIRT676632 CSNK1E casein kinase 1 epsilon 2 2
MIRT679503 ZNF106 zinc finger protein 106 2 2
MIRT680978 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682272 RS1 retinoschisin 1 2 2
MIRT682421 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT682510 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693926 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT700660 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT700740 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT702871 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT703192 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT704453 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT704709 CHEK1 checkpoint kinase 1 2 2
MIRT706164 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT713334 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713416 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT716300 PAX1 paired box 1 2 2
MIRT717394 PTPRF protein tyrosine phosphatase, receptor type F 2 2
MIRT718453 BTNL9 butyrophilin like 9 2 2
MIRT718728 VWA9 integrator complex subunit 14 2 2
MIRT719029 SHROOM3 shroom family member 3 2 2
MIRT720367 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT723120 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT733741 EGFR epidermal growth factor receptor 4 0
MIRT734281 HIF1A hypoxia inducible factor 1 alpha subunit 3 0
MIRT735934 EYA3 EYA transcriptional coactivator and phosphatase 3 3 0
MIRT755830 IGF1 insulin like growth factor 1 5 1
MIRT755831 BCL2 BCL2, apoptosis regulator 4 1
MIRT755832 CDK2 cyclin dependent kinase 2 4 1
MIRT755833 BAX BCL2 associated X, apoptosis regulator 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-646 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-miR-646 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-646 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM43)
hsa-miR-646 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-646 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-646 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-646 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-646 Cisplatin 5460033 NSC119875 approved sensitive cell line (H460)

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