miRTarBase - #MIRT097031


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pre-miRNA Information
pre-miRNA hsa-mir-6077   
Genomic Coordinates chr1: 148388282 - 148388363
Description Homo sapiens miR-6077 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6077
Sequence 13| GGGAAGAGCUGUACGGCCUUC |33
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1462165071 1 dbSNP
rs1265010670 5 dbSNP
rs1217611018 9 dbSNP
rs1344561872 12 dbSNP
rs1280409926 14 dbSNP
rs1239463516 15 dbSNP
rs1337271015 21 dbSNP
Putative Targets

Gene Information
Gene Symbol MAP1B   
Synonyms FUTSCH, MAP5, PPP1R102
Description microtubule associated protein 1B
Transcript NM_005909   
Expression
Putative miRNA Targets on MAP1B
3'UTR of MAP1B
(miRNA target sites are highlighted)		 
>MAP1B|NM_005909|3'UTR
   1 AAACCAAGGCCAGCCACACCACAGGATCTGAACTTTGTTTCCAGAAATTCTTCAATTTGAAATCACCTTTTCTAAAAAGT
  81 CAATTCATCTAGTTAAGTCGCTGAACAATTACCTGCCAAATGCTATACTGTGTCATGGTGATGCAAGTCACTAAATTTCT
 161 CAGTTTTTGCTGATTGCTAAGGGAAATAACAGTATTTCCACAATAGGGTTCAAATTCCTGCAAAATTACCTACCCCAGTT
 241 CATCTCTGCTGAACATTTGGAAACCATGCACTAGCCAACCCAACTGACTTCTGCTAGGTAGAGGCATTTGTCTTAGAGAG
 321 AGAGAGAGCGCGGGAGAGAGTGAGAGAGAGTGAGAGCACAAAGATAACGCAGGAGAGAGAGAGAGAAAGAATGAGAAAGA
 401 AAAGGAATGCAAGAGAAGGAGATGTAATGACAGAGAGTTCTGGTGAGATACCCAGAGAGAAAAAGAGAGAGCAGGGTGGG
 481 GTAAGGAGGAGAAAATAAACCAACAATTAGGTCTGCATTTTCTCAGGCAGTAGGCATTCTTTAGTCTACATAGGCAAAGT
 561 TTTCCATTTTTGTCAGTCTGAGTCATCAAAAAGAGTCTTAATTTTCTAAAACAAGTTGGCTAGAAGAAAGTAAAAAGAAC
 641 AACACTTGTTATGAGGGCATGTGATATTTTCACATCTTAATTAAGCTCCTTCAGTTTGAAGGCTGCACACTGACATAATG
 721 TAGTGAGTGTAGACTGGCCATGCAAGTGGTTTGGGCCCCATTCAGAACTCTCAGACTCTAAACACACAAGTAGATTGATC
 801 TAAGGCATGCTCCCAGCATTTGTCCACCCACTTAGTCCACTCTGAGTCGATTAACCTGCATGCAGCAACACCCAAGTCCA
 881 CCCCAATTAACTGAAGCAAATACCAAAGCAGTTGGGAGTACATATGGTAGACAATTTGCCTTAGGAAGTGACTTGAATGT
 961 ACAAAGATACTTGATGCACTTATTTTTTAATGTGAGACAGCAAGTTTATAAAACATCCATATAGGATTATAGATACTTAA
1041 AGGAACACGTGGGTGAGCGTGTGTGGGGGTACTAGAAGCTGATCTGATTGGTCCAACAGTTTGATGCTGAGTCATGCGTG
1121 TTGAATCCCACTTCAGTGCACCTGTGGCCTCTCAGTCAAACAAGTTGTGCCTTTCACAGCTTCTTTACTACTGCAAGTTC
1201 AAGACTGAAATGGCTTCTATGATCAGAACTGGGAAAACAGTGAATCTTATGGTGGAAGAGGTTCTCAGCAAGTGTACAGT
1281 ATTTACCTTCCTTTGTCTTACATTGGCTTTTTAAATTTTCCATTAATTTCAACATAATTATGGGAACAAGTGTACAGAAG
1361 AATTTTTTTTTTAAGATATGTGAGAACTTTTCATAGATGAACTTTTTAACAAATGTTTTCATTTACAGGAAATTGCAAAG
1441 AAAATTCTCAAGTGATAGTCTTTTTTTTTAAGTGTTTCGTAAGACAAAAATTGAATAATGTTTTTTGAAGTTCTGGCAAG
1521 ATTGAAGTCTGATATTGCAGTAATGATATTTATTAAAAACCCATAACTACCAGGAATAATGATACCTCCCACCCCTTGAT
1601 TCCCATAACATAAAAGTGCTACTTGAGAGTGGGGGAGAATGGCATGGTAGGCTACTTTTCAGGGCCTTGACAAGTACATC
1681 ACCCAGTGGTATCCTACATACTTCTTTCAAGATCTTCAACCATGAGGTAAAAGAGCCAAGTTCAAAGAACCCTAGCACAA
1761 ATTTGCTTTGGGATTTTCTTTTCTGGAAAAAAAAAATAAAAGAAATAGTACATTGAAAACAAATGAATTCTCAACTCCTA
1841 CGGTTCATGTAGAGTTTAGAGAAAATTTCCATCATTGTCATCATTGAACTGTGAACCTGGGAAGCCAGATCATGATTAAC
1921 ACTGACATCAAGTTTCAAGTTGCAGATCAATGCACCCAGTGTTCAGATGAGGCAAACTTCTCCGTGACAACTGTGCTGTG
2001 CTCTGTCACATTACATTTCCTGCAGACTCTAAGATCTACGGAGTAGAGAACAATGACCTCATTTTATTTTCTATGTTAGT
2081 TATTTATTTCAAAATTAACATTTTAGTTGATTTTTGTCTGATAAGTCTATGTTTTGCACTGCTAACTATGATGAGGGTTT
2161 AAAAAAATGCTTCTTCAGGGTCCTTTCACTGAGGACCTATGCAGTCTACTTAATGCTGTGAATTACATTTTTCAAATGTT
2241 TAATTTTTTAAAGAAAATTAATATTCTATTTTTGTTAGGCTTCTCTAGAAATGCAGCTTTTATTTATTACCCCATTTCTT
2321 TCAAGTCCTTGGAAAATAACATATTAAGGGTACAAGAAATTAACACATGATGGAAAAGTCATTGTGACGCCAATGAATTT
2401 CATTGAGTATAAACTCATCTACTTCAAATTTATTTTATAACACAACCTAAGATACTCAAGATAATTATTTAATGGTTAGC
2481 TCTTAAGTTGAATTGGTCTACATAATGCGTGGGAAGAAAACCAGATTTTTAGCCTTCTTGCCAAATCCAGACCTCTGGTT
2561 GATTTTTCTTTGACAGAAGATGCAAGTTATTTTCCAATTTCACAATTAAATGTATTTAACCTGAACATTATTTTGCTTTA
2641 AAAACTATAAACATTGTAGGAGAATTATAGCCAGTCTTCAGTTATAACCACTCCACCCTCCTCACTTTCTCTCTCTCTCT
2721 CTCTTTTTTTTTTTTTTTTTTTTTGCTATGGGATTTAATGGGAAAAATATGTAAAAACTGTCACTAGTCAGCTGGCTCTT
2801 TTTCCTATGAAATCTATCAGTACCTTTCTCCATCCGTTGTTCTCAATATGACCACAGAGCCTGAGTATACCAAGAAAACC
2881 AATATTCGCATTACAGGTTGCTCCTGTCCTTCCAGACACCTTTCCTGCCTGTGTGACTAACCTAATTTTGCTAGTTCCAT
2961 AAATACACGATTAGTTTAGTAACAGCCATCACAATGTACCATGTACATTCATGGTGAGAGCTAAAGATCGACACAGACTT
3041 CTAGGAGCTTTGTTCATACTGATTACTTAATCCAATTGTATAGATTGAATATTTGAGTGGAAGGAATTTACACTCTGTTT
3121 AAATGATGGGATTCTATCGAGATAGCACTCATGATCATGACCTTTTTGGTAGTATTCTTAAACAAAATTCTACAGAGACT
3201 AAATGTTAGCGATGATCCTCCATTTTCAATTTTAACCAATTCTGTCCCCTTTCTCAAAACCCTGAGCCCTGTGCATGCTT
3281 TCTCAGTCTTGTGGTGGGACTGGATACAATGACTAACTTCCCCTCCTCCCCTCTTTAAACACCATTTTCCATGGAGTTCA
3361 AAAAAATTTTTTTTCTTAACGTTACATATCATAGTGAATGGTTTCCCCAGTGTATATGAATGTTTTAAGTGTCTCCAATA
3441 GCTTATGCAGTCTAGGAGCTTTCCAATACTCATTTAATTAAGATTTAATCATTTGCTAATGGAAATCTTACCACCTTTCA
3521 TTTTCCCTCTGTTACCAAATTTCAGCTCTTAGGAGCTGCTCTACAATTCTGAATTTGCTTTTCTTGCCTCTCTTTAGTCA
3601 CCTGTCACAGGAGGTTCCTGCTCAGTAATGATATTGTGAGTTAGGATAATAACTTTTTTTTTTTGTGCTTCAGATTTAGA
3681 AGAAAAGATCCTGTTTCCATTTGAAAGGAACTGTAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAGCCT
3761 AGGGATGAGCATTTCTTTGAAAGCAATTAGGTTATTCACCTGGTATTAAAACTATTTACTGTTAAAAAATCTGTGACTTC
3841 ATGAAGTTGATTTTTAAAGGCAGCATCAAAAACTGAAAAGGAAGGGAAAAAATAGGCAGCTTCTCTGCACTTGTTTGGAG
3921 CTCCCCAAAACAGGAGCCATGGAGAAGTGGCATCAAGACCGGGCTGCCCTTTCGAGAACACCCTGTGGCAGTTCAGAGAC
4001 ACGCTTTTCCTACACTGCATGCAGCCCCTCTTTCCAGCACTGGAAAGAAGTGGTCTTGAGCCCAGCTGAGAAGCACTTCA
4081 CACTCCTCTCTCTTGTTCTGAATGGTGTTTGTGTCAGTCTGCAGCTGTGTATGGTATTATGTCTTATAATCCTGCATCAC
4161 TTCTATCCTATCCAGTCATATCTAATGTAGAAAATTAGTTTCCAGTGAAAGTAATATGTAGTGCTTTTATGATATTTGTG
4241 TGCAATATCCCCTCTTCCATTGAGGATATTTGATGTAAAGGAAAAAAAAAAACTCAGTTCCACAATAAAATACAAAAGTG
4321 GCAAAAGTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuucCGGCAU-GUCGAGAAGGg 5'
              ||  || |  ||||||| 
Target 5' gtgtGCAATATCCCCTCTTCCa 3'
 4238 - 4259 145.00 -13.40
2 
miRNA  3' cuuCCGGCA------UGU-CGAGAAGGg 5'
             ||| ||      ||| |||:|||| 
Target 5' tgtGGCAGTTCAGAGACACGCTTTTCCt 3'
 3984 - 4011 140.00 -14.50
3 
miRNA  3' cuuccgGCAUGUC---GAGAAGGg 5'
                | |:|||   |||||:| 
Target 5' acactgCATGCAGCCCCTCTTTCc 3'
 4012 - 4035 135.00 -16.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30178295 15 COSMIC
COSN31564772 44 COSMIC
COSN31582990 56 COSMIC
COSN31528969 91 COSMIC
COSN18723948 101 COSMIC
COSN30519823 151 COSMIC
COSN31574592 165 COSMIC
COSN30163500 245 COSMIC
COSN31480815 247 COSMIC
COSN30175265 273 COSMIC
COSN30539731 332 COSMIC
COSN24951323 585 COSMIC
COSN31524597 817 COSMIC
COSN26549991 823 COSMIC
COSN31608015 850 COSMIC
COSN26552604 1082 COSMIC
COSN26636799 1170 COSMIC
COSN26566045 1275 COSMIC
COSN7952139 1404 COSMIC
COSN20101353 1470 COSMIC
COSN7952140 1470 COSMIC
COSN32063674 1480 COSMIC
COSN2116280 1641 COSMIC
COSN16000682 1789 COSMIC
COSN2116281 1800 COSMIC
COSN29130273 1826 COSMIC
COSN32057333 2234 COSMIC
COSN15156056 2294 COSMIC
COSN18764146 2725 COSMIC
COSN31959952 2837 COSMIC
COSN20101354 2849 COSMIC
COSN15739099 3514 COSMIC
COSN32057214 3626 COSMIC
COSN27220266 3665 COSMIC
COSN21204033 3698 COSMIC
COSN31959953 3766 COSMIC
COSN2116282 3881 COSMIC
COSN24945971 3980 COSMIC
COSN24625921 4023 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1338357445 2 dbSNP
rs766846125 4 dbSNP
rs754339749 5 dbSNP
rs1489830178 7 dbSNP
rs759602491 10 dbSNP
rs1267997123 11 dbSNP
rs868497640 21 dbSNP
rs765242089 22 dbSNP
rs1170975673 26 dbSNP
rs1190777584 28 dbSNP
rs752921527 31 dbSNP
rs758577054 42 dbSNP
rs1169267579 44 dbSNP
rs1430268542 62 dbSNP
rs907893846 66 dbSNP
rs1057441356 67 dbSNP
rs1180241365 82 dbSNP
rs1461011383 86 dbSNP
rs1244042684 100 dbSNP
rs750262423 101 dbSNP
rs1216150042 102 dbSNP
rs1228747551 110 dbSNP
rs1309810130 120 dbSNP
rs368723994 123 dbSNP
rs1012993902 126 dbSNP
rs1227282644 129 dbSNP
rs1383066674 135 dbSNP
rs555860547 158 dbSNP
rs574057609 160 dbSNP
rs1444127321 161 dbSNP
rs1399223327 164 dbSNP
rs996655666 172 dbSNP
rs541500425 176 dbSNP
rs750038401 182 dbSNP
rs1366684234 200 dbSNP
rs888552337 209 dbSNP
rs1004751911 210 dbSNP
rs180905374 217 dbSNP
rs966008013 234 dbSNP
rs1011515377 242 dbSNP
rs1385954139 243 dbSNP
rs1185584779 245 dbSNP
rs1478292979 246 dbSNP
rs1456637547 256 dbSNP
rs1250202035 258 dbSNP
rs977053980 267 dbSNP
rs1029937903 270 dbSNP
rs561209065 280 dbSNP
rs1359464951 293 dbSNP
rs1316573606 295 dbSNP
rs758258232 303 dbSNP
rs779537912 309 dbSNP
rs1002580909 315 dbSNP
rs1375755182 315 dbSNP
rs967270112 315 dbSNP
rs1035347652 317 dbSNP
rs1382121873 319 dbSNP
rs914283473 323 dbSNP
rs563075291 326 dbSNP
rs1425225847 328 dbSNP
rs373838750 330 dbSNP
rs947164630 331 dbSNP
rs753263023 332 dbSNP
rs75893221 333 dbSNP
rs1182976585 334 dbSNP
rs778663712 334 dbSNP
rs748412266 338 dbSNP
rs1330924457 342 dbSNP
rs1490661971 342 dbSNP
rs1234581419 345 dbSNP
rs1213872252 358 dbSNP
rs1277180592 365 dbSNP
rs1261007902 367 dbSNP
rs546118431 369 dbSNP
rs1329069798 370 dbSNP
rs1300371976 373 dbSNP
rs1347375047 373 dbSNP
rs984910436 373 dbSNP
rs185760247 374 dbSNP
rs1057078760 385 dbSNP
rs1305001296 388 dbSNP
rs1418018046 389 dbSNP
rs908156830 390 dbSNP
rs1159308420 397 dbSNP
rs1286846009 406 dbSNP
rs915843620 409 dbSNP
rs141173288 430 dbSNP
rs867718651 436 dbSNP
rs1048430758 438 dbSNP
rs976087760 450 dbSNP
rs888500288 459 dbSNP
rs1004335930 460 dbSNP
rs530427942 462 dbSNP
rs572536823 464 dbSNP
rs1206484450 473 dbSNP
rs530759258 477 dbSNP
rs778240747 482 dbSNP
rs1050914014 494 dbSNP
rs901368281 501 dbSNP
rs1276296404 507 dbSNP
rs998772542 514 dbSNP
rs548894435 517 dbSNP
rs1028506472 523 dbSNP
rs1452022767 525 dbSNP
rs1319087815 534 dbSNP
rs954297889 537 dbSNP
rs1400380760 543 dbSNP
rs1200909376 545 dbSNP
rs531000202 552 dbSNP
rs1439017037 554 dbSNP
rs374340651 555 dbSNP
rs544683761 557 dbSNP
rs1169080211 573 dbSNP
rs1158667046 577 dbSNP
rs1381656095 581 dbSNP
rs562980139 582 dbSNP
rs1422324462 583 dbSNP
rs1162337797 591 dbSNP
rs749646473 593 dbSNP
rs1242143413 596 dbSNP
rs1194762950 598 dbSNP
rs1390454075 600 dbSNP
rs1387781468 610 dbSNP
rs1325953274 617 dbSNP
rs1204049612 621 dbSNP
rs1462445507 622 dbSNP
rs1255928269 625 dbSNP
rs1021279501 634 dbSNP
rs1213882414 638 dbSNP
rs1041571889 640 dbSNP
rs968869126 641 dbSNP
rs977222629 647 dbSNP
rs1229788418 650 dbSNP
rs190998859 653 dbSNP
rs1453661925 654 dbSNP
rs1446725775 655 dbSNP
rs959871651 663 dbSNP
rs1420900755 665 dbSNP
rs992679683 674 dbSNP
rs1169140335 677 dbSNP
rs915794456 683 dbSNP
rs1035364925 699 dbSNP
rs1183755319 715 dbSNP
rs377490491 716 dbSNP
rs1446117328 720 dbSNP
rs1236109861 730 dbSNP
rs150797795 741 dbSNP
rs1438316688 743 dbSNP
rs1012681130 747 dbSNP
rs566900892 750 dbSNP
rs370977222 762 dbSNP
rs1208003036 765 dbSNP
rs1027179167 773 dbSNP
rs779006977 775 dbSNP
rs746081672 781 dbSNP
rs1314495614 785 dbSNP
rs1211353090 787 dbSNP
rs1385325725 792 dbSNP
rs772335490 798 dbSNP
rs775685959 806 dbSNP
rs1179218564 808 dbSNP
rs746981659 815 dbSNP
rs768504408 832 dbSNP
rs1423301163 834 dbSNP
rs901270286 838 dbSNP
rs527965953 840 dbSNP
rs1049892622 849 dbSNP
rs1442307211 850 dbSNP
rs932006373 853 dbSNP
rs986132753 858 dbSNP
rs890028945 859 dbSNP
rs1176394369 863 dbSNP
rs1470354420 870 dbSNP
rs1011151904 873 dbSNP
rs914682978 884 dbSNP
rs1196613479 897 dbSNP
rs552863206 912 dbSNP
rs182267638 913 dbSNP
rs1223377195 919 dbSNP
rs968443030 925 dbSNP
rs998941148 926 dbSNP
rs1223443137 931 dbSNP
rs1031396485 941 dbSNP
rs1281677755 944 dbSNP
rs938598397 949 dbSNP
rs1345494519 955 dbSNP
rs1303222563 962 dbSNP
rs1426066122 965 dbSNP
rs1342935584 970 dbSNP
rs1157828657 982 dbSNP
rs960063715 989 dbSNP
rs1057407007 997 dbSNP
rs1170643523 1004 dbSNP
rs992629150 1004 dbSNP
rs1480052805 1010 dbSNP
rs915783036 1012 dbSNP
rs1269606355 1016 dbSNP
rs1200217301 1026 dbSNP
rs1490844666 1031 dbSNP
rs538062196 1037 dbSNP
rs1215286280 1038 dbSNP
rs201680197 1044 dbSNP
rs754997593 1049 dbSNP
rs112742907 1050 dbSNP
rs1323432222 1053 dbSNP
rs567815513 1060 dbSNP
rs1407297730 1062 dbSNP
rs1048056261 1066 dbSNP
rs888229059 1069 dbSNP
rs940010969 1072 dbSNP
rs1003883055 1073 dbSNP
rs1173984496 1076 dbSNP
rs973144452 1097 dbSNP
rs1469155540 1114 dbSNP
rs1312110979 1118 dbSNP
rs867918455 1119 dbSNP
rs1429753718 1121 dbSNP
rs1015046769 1126 dbSNP
rs1426698460 1135 dbSNP
rs922677672 1137 dbSNP
rs145874278 1149 dbSNP
rs369374867 1149 dbSNP
rs934110398 1162 dbSNP
rs765018179 1168 dbSNP
rs11546547 1172 dbSNP
rs889974360 1173 dbSNP
rs1244110875 1188 dbSNP
rs1202019409 1193 dbSNP
rs1461095721 1194 dbSNP
rs997683618 1195 dbSNP
rs772809887 1225 dbSNP
rs1031027607 1230 dbSNP
rs1317118716 1231 dbSNP
rs1294195965 1235 dbSNP
rs953653186 1239 dbSNP
rs1363621998 1241 dbSNP
rs528108810 1247 dbSNP
rs535219763 1250 dbSNP
rs1451469304 1255 dbSNP
rs914545468 1256 dbSNP
rs1459932526 1259 dbSNP
rs1180716597 1262 dbSNP
rs552781794 1279 dbSNP
rs1353903338 1292 dbSNP
rs553342033 1303 dbSNP
rs1256271582 1304 dbSNP
rs1425145226 1334 dbSNP
rs1429134673 1335 dbSNP
rs968793487 1339 dbSNP
rs1181932464 1341 dbSNP
rs1444260311 1342 dbSNP
rs998493633 1352 dbSNP
rs977479857 1355 dbSNP
rs190596456 1361 dbSNP
rs551479407 1363 dbSNP
rs895560550 1363 dbSNP
rs938524078 1363 dbSNP
rs78338175 1364 dbSNP
rs1312317890 1366 dbSNP
rs1014054472 1370 dbSNP
rs1244731124 1376 dbSNP
rs915852823 1379 dbSNP
rs1316855580 1380 dbSNP
rs948656350 1384 dbSNP
rs545755839 1386 dbSNP
rs1022788205 1388 dbSNP
rs1403012379 1395 dbSNP
rs182765437 1398 dbSNP
rs983972150 1400 dbSNP
rs1016810530 1411 dbSNP
rs1161806059 1424 dbSNP
rs1424221447 1448 dbSNP
rs576117986 1453 dbSNP
rs1417645107 1461 dbSNP
rs142725688 1461 dbSNP
rs397941318 1461 dbSNP
rs1250264778 1470 dbSNP
rs900914666 1470 dbSNP
rs1403047750 1471 dbSNP
rs1397980804 1472 dbSNP
rs998134723 1473 dbSNP
rs1339593923 1475 dbSNP
rs12108730 1479 dbSNP
rs187047295 1480 dbSNP
rs1310321287 1482 dbSNP
rs74924077 1485 dbSNP
rs754445550 1488 dbSNP
rs189926085 1492 dbSNP
rs778302889 1497 dbSNP
rs1483976558 1499 dbSNP
rs1021654788 1500 dbSNP
rs556045668 1501 dbSNP
rs985537207 1504 dbSNP
rs1301366988 1512 dbSNP
rs1261931527 1514 dbSNP
rs1477950762 1517 dbSNP
rs1194778912 1522 dbSNP
rs977407706 1523 dbSNP
rs911321206 1533 dbSNP
rs1165153187 1534 dbSNP
rs1431909539 1543 dbSNP
rs924713699 1546 dbSNP
rs560267156 1553 dbSNP
rs527708657 1554 dbSNP
rs542117782 1555 dbSNP
rs182519285 1564 dbSNP
rs915710202 1565 dbSNP
rs1202947936 1567 dbSNP
rs948645728 1571 dbSNP
rs1296427859 1580 dbSNP
rs1360073937 1583 dbSNP
rs1400869602 1595 dbSNP
rs35335401 1602 dbSNP
rs1048282057 1604 dbSNP
rs909563578 1606 dbSNP
rs1405488438 1607 dbSNP
rs1299766846 1619 dbSNP
rs1325636098 1620 dbSNP
rs1365278319 1622 dbSNP
rs571131407 1630 dbSNP
rs902733284 1632 dbSNP
rs1427639917 1634 dbSNP
rs1301967960 1641 dbSNP
rs900966946 1643 dbSNP
rs935617873 1646 dbSNP
rs1190446068 1652 dbSNP
rs1052785790 1656 dbSNP
rs1446059247 1667 dbSNP
rs895508602 1677 dbSNP
rs1013941125 1687 dbSNP
rs1284713484 1694 dbSNP
rs1022696702 1696 dbSNP
rs1262311003 1706 dbSNP
rs905611187 1725 dbSNP
rs1223990641 1739 dbSNP
rs1347100865 1748 dbSNP
rs531741151 1751 dbSNP
rs1218383604 1757 dbSNP
rs1265762408 1762 dbSNP
rs889267426 1770 dbSNP
rs1005354154 1772 dbSNP
rs536544632 1775 dbSNP
rs1296496058 1776 dbSNP
rs1008239226 1787 dbSNP
rs142009623 1787 dbSNP
rs1437584828 1787 dbSNP
rs1191115203 1793 dbSNP
rs1405064806 1794 dbSNP
rs549956179 1798 dbSNP
rs904757155 1807 dbSNP
rs998894878 1812 dbSNP
rs568356896 1813 dbSNP
rs754304848 1818 dbSNP
rs1442422914 1831 dbSNP
rs1268591440 1837 dbSNP
rs1435441130 1842 dbSNP
rs377560233 1843 dbSNP
rs961315708 1848 dbSNP
rs1270873265 1859 dbSNP
rs1195174780 1860 dbSNP
rs553858186 1875 dbSNP
rs1298446697 1876 dbSNP
rs1420504838 1877 dbSNP
rs1031669309 1892 dbSNP
rs565507192 1893 dbSNP
rs960406613 1932 dbSNP
rs539428554 1947 dbSNP
rs1342649964 1976 dbSNP
rs992885838 1978 dbSNP
rs955347772 1984 dbSNP
rs985445578 1985 dbSNP
rs911266878 1991 dbSNP
rs1396531382 1994 dbSNP
rs1169994463 1997 dbSNP
rs968112177 2016 dbSNP
rs1384301257 2030 dbSNP
rs1183958434 2040 dbSNP
rs969887068 2041 dbSNP
rs1230970280 2042 dbSNP
rs1369579952 2056 dbSNP
rs1438370701 2073 dbSNP
rs979619514 2074 dbSNP
rs1444512399 2075 dbSNP
rs983904087 2076 dbSNP
rs1291238274 2080 dbSNP
rs1229105436 2094 dbSNP
rs1358863350 2105 dbSNP
rs924146154 2107 dbSNP
rs557721193 2119 dbSNP
rs1278168323 2120 dbSNP
rs1307854010 2123 dbSNP
rs113449105 2128 dbSNP
rs376685295 2128 dbSNP
rs1241848585 2132 dbSNP
rs935580896 2137 dbSNP
rs1309315028 2138 dbSNP
rs1402624937 2139 dbSNP
rs187732419 2140 dbSNP
rs537387294 2147 dbSNP
rs555587819 2154 dbSNP
rs1406757319 2157 dbSNP
rs1221225360 2158 dbSNP
rs1247683114 2159 dbSNP
rs1470193392 2162 dbSNP
rs1253961125 2170 dbSNP
rs1177359536 2181 dbSNP
rs1237617902 2191 dbSNP
rs949659613 2192 dbSNP
rs939933728 2193 dbSNP
rs867979817 2203 dbSNP
rs199618434 2204 dbSNP
rs905601268 2205 dbSNP
rs922234122 2208 dbSNP
rs933754627 2214 dbSNP
rs1282561585 2215 dbSNP
rs1005752325 2225 dbSNP
rs1330415184 2258 dbSNP
rs1038187028 2263 dbSNP
rs1336325638 2271 dbSNP
rs889521490 2289 dbSNP
rs1344283126 2299 dbSNP
rs897007182 2312 dbSNP
rs1293653190 2313 dbSNP
rs1438125581 2317 dbSNP
rs1421590228 2324 dbSNP
rs943574205 2328 dbSNP
rs1317354740 2332 dbSNP
rs573911337 2341 dbSNP
rs994027569 2345 dbSNP
rs139416035 2350 dbSNP
rs1480082446 2351 dbSNP
rs955295880 2353 dbSNP
rs904809438 2354 dbSNP
rs1489587235 2357 dbSNP
rs192664890 2366 dbSNP
rs1463976484 2388 dbSNP
rs1018267112 2389 dbSNP
rs895790285 2390 dbSNP
rs572307662 2394 dbSNP
rs1014766595 2403 dbSNP
rs1202302818 2404 dbSNP
rs1323495631 2406 dbSNP
rs1301352908 2408 dbSNP
rs1376985075 2424 dbSNP
rs1220508662 2426 dbSNP
rs1359270078 2426 dbSNP
rs1269155296 2429 dbSNP
rs1435401793 2431 dbSNP
rs1448262237 2440 dbSNP
rs10036291 2442 dbSNP
rs1469201281 2464 dbSNP
rs1359740732 2475 dbSNP
rs979949982 2484 dbSNP
rs970546745 2486 dbSNP
rs1377933014 2488 dbSNP
rs1417471463 2492 dbSNP
rs760392345 2494 dbSNP
rs1016692162 2509 dbSNP
rs768217008 2510 dbSNP
rs1197289060 2523 dbSNP
rs1461251038 2527 dbSNP
rs1258056102 2534 dbSNP
rs1257038235 2535 dbSNP
rs992340711 2555 dbSNP
rs564368701 2560 dbSNP
rs922273977 2569 dbSNP
rs538683082 2571 dbSNP
rs948316201 2574 dbSNP
rs1228653927 2576 dbSNP
rs985513585 2588 dbSNP
rs1044082127 2589 dbSNP
rs926969553 2598 dbSNP
rs1379643111 2599 dbSNP
rs531874696 2607 dbSNP
rs930391 2622 dbSNP
rs1038498197 2624 dbSNP
rs1168078059 2629 dbSNP
rs1430635632 2632 dbSNP
rs1392318048 2640 dbSNP
rs1415675507 2641 dbSNP
rs946440133 2643 dbSNP
rs1043255473 2653 dbSNP
rs926071638 2654 dbSNP
rs561924090 2655 dbSNP
rs1169697947 2658 dbSNP
rs529466056 2676 dbSNP
rs1479972233 2680 dbSNP
rs1250386521 2686 dbSNP
rs1400872990 2690 dbSNP
rs1205334909 2696 dbSNP
rs1289068906 2708 dbSNP
rs1313548234 2708 dbSNP
rs1314642936 2708 dbSNP
rs201027127 2708 dbSNP
rs934916363 2708 dbSNP
rs896921702 2712 dbSNP
rs994369024 2717 dbSNP
rs1307481086 2719 dbSNP
rs1410447781 2719 dbSNP
rs1161859480 2720 dbSNP
rs1167401490 2720 dbSNP
rs1369388566 2720 dbSNP
rs1372488232 2720 dbSNP
rs1457613838 2720 dbSNP
rs750942581 2720 dbSNP
rs759615463 2720 dbSNP
rs775799329 2721 dbSNP
rs1183555206 2722 dbSNP
rs1208824537 2722 dbSNP
rs1266193307 2722 dbSNP
rs1356387562 2722 dbSNP
rs867338067 2722 dbSNP
rs1488633441 2723 dbSNP
rs1160489556 2724 dbSNP
rs1266980849 2724 dbSNP
rs1288829625 2724 dbSNP
rs1295646914 2724 dbSNP
rs1301425944 2724 dbSNP
rs1352358891 2724 dbSNP
rs1386396445 2724 dbSNP
rs1391812903 2724 dbSNP
rs1411703199 2724 dbSNP
rs1451992494 2724 dbSNP
rs1491202745 2724 dbSNP
rs564543921 2724 dbSNP
rs765982531 2724 dbSNP
rs767309478 2724 dbSNP
rs868341049 2724 dbSNP
rs1491104343 2725 dbSNP
rs113587055 2726 dbSNP
rs891034492 2727 dbSNP
rs113145780 2728 dbSNP
rs1448271742 2730 dbSNP
rs1285653971 2731 dbSNP
rs1357756231 2732 dbSNP
rs1217115491 2733 dbSNP
rs1277987784 2735 dbSNP
rs369783965 2736 dbSNP
rs1319162152 2737 dbSNP
rs1006804082 2738 dbSNP
rs1331759123 2740 dbSNP
rs1303601953 2744 dbSNP
rs1282877381 2745 dbSNP
rs1380764359 2745 dbSNP
rs963492975 2746 dbSNP
rs1211757907 2747 dbSNP
rs1487192064 2747 dbSNP
rs1276563602 2748 dbSNP
rs1002062025 2749 dbSNP
rs1443770396 2750 dbSNP
rs896042377 2750 dbSNP
rs1211077935 2751 dbSNP
rs1259788926 2752 dbSNP
rs1487437610 2753 dbSNP
rs1192611092 2754 dbSNP
rs1466056703 2758 dbSNP
rs1424116163 2760 dbSNP
rs1476336125 2763 dbSNP
rs1014278394 2792 dbSNP
rs1248387549 2798 dbSNP
rs1423840005 2799 dbSNP
rs1277748010 2808 dbSNP
rs1200975366 2817 dbSNP
rs1414609178 2821 dbSNP
rs1257864490 2823 dbSNP
rs1335629861 2825 dbSNP
rs1226413959 2832 dbSNP
rs1018214860 2836 dbSNP
rs968483185 2837 dbSNP
rs1000888216 2839 dbSNP
rs547137497 2840 dbSNP
rs565771904 2847 dbSNP
rs11437861 2848 dbSNP
rs386404073 2848 dbSNP
rs869218681 2850 dbSNP
rs1403684625 2853 dbSNP
rs1165703299 2863 dbSNP
rs1428691537 2864 dbSNP
rs1341574887 2865 dbSNP
rs1170099376 2870 dbSNP
rs1442486089 2872 dbSNP
rs1236702428 2886 dbSNP
rs544354496 2888 dbSNP
rs867127964 2889 dbSNP
rs992317435 2893 dbSNP
rs1344925700 2901 dbSNP
rs1219824684 2913 dbSNP
rs961166195 2915 dbSNP
rs551347988 2916 dbSNP
rs1230922017 2920 dbSNP
rs1029604506 2929 dbSNP
rs969609183 2935 dbSNP
rs981049777 2942 dbSNP
rs747104531 2965 dbSNP
rs1351736568 2969 dbSNP
rs985176104 2970 dbSNP
rs1342843849 2971 dbSNP
rs768726691 2975 dbSNP
rs910843480 2976 dbSNP
rs1216217965 2995 dbSNP
rs967792763 3003 dbSNP
rs569704864 3006 dbSNP
rs1422393822 3007 dbSNP
rs11742211 3016 dbSNP
rs979152838 3028 dbSNP
rs144074665 3030 dbSNP
rs561145562 3031 dbSNP
rs1362055580 3053 dbSNP
rs1181388846 3057 dbSNP
rs1482743694 3065 dbSNP
rs940999895 3076 dbSNP
rs1207525490 3082 dbSNP
rs1245989013 3086 dbSNP
rs146003742 3087 dbSNP
rs574976319 3088 dbSNP
rs973768792 3090 dbSNP
rs1229318040 3092 dbSNP
rs184007837 3097 dbSNP
rs929776368 3113 dbSNP
rs934842820 3113 dbSNP
rs1053676826 3116 dbSNP
rs917543951 3120 dbSNP
rs1289720464 3124 dbSNP
rs1433822293 3130 dbSNP
rs188931362 3139 dbSNP
rs1158935550 3140 dbSNP
rs890985128 3143 dbSNP
rs1406823779 3155 dbSNP
rs942608974 3159 dbSNP
rs1158285496 3172 dbSNP
rs1472901779 3176 dbSNP
rs1005605575 3180 dbSNP
rs1039569278 3180 dbSNP
rs1477160231 3184 dbSNP
rs1246280076 3193 dbSNP
rs1222604089 3194 dbSNP
rs903770415 3199 dbSNP
rs1453633928 3205 dbSNP
rs192208640 3212 dbSNP
rs553928488 3214 dbSNP
rs58068754 3228 dbSNP
rs892539988 3234 dbSNP
rs1305682678 3236 dbSNP
rs1374829653 3238 dbSNP
rs1013699684 3245 dbSNP
rs1275029277 3248 dbSNP
rs1438214194 3249 dbSNP
rs1287099391 3250 dbSNP
rs955324713 3262 dbSNP
rs1457692888 3271 dbSNP
rs1353119911 3292 dbSNP
rs1390833347 3292 dbSNP
rs546019179 3295 dbSNP
rs11551257 3300 dbSNP
rs1424576374 3309 dbSNP
rs1191950000 3312 dbSNP
rs1479150681 3321 dbSNP
rs1288909401 3323 dbSNP
rs1246548039 3325 dbSNP
rs1452075796 3327 dbSNP
rs776441230 3358 dbSNP
rs980953448 3364 dbSNP
rs1208674757 3367 dbSNP
rs540906710 3367 dbSNP
rs1278765320 3368 dbSNP
rs1220577485 3370 dbSNP
rs979077546 3380 dbSNP
rs1195473350 3381 dbSNP
rs1016889539 3382 dbSNP
rs564489832 3385 dbSNP
rs923708467 3387 dbSNP
rs1435459552 3392 dbSNP
rs576056664 3401 dbSNP
rs1300959984 3402 dbSNP
rs974138945 3410 dbSNP
rs918298415 3413 dbSNP
rs1447240538 3417 dbSNP
rs1438610476 3424 dbSNP
rs989003865 3437 dbSNP
rs1176942616 3440 dbSNP
rs917367109 3443 dbSNP
rs1388620281 3451 dbSNP
rs1178719491 3459 dbSNP
rs1168198318 3463 dbSNP
rs1450412351 3466 dbSNP
rs1365120722 3467 dbSNP
rs1180595859 3469 dbSNP
rs950351425 3474 dbSNP
rs866187891 3486 dbSNP
rs1237540141 3488 dbSNP
rs1211703275 3491 dbSNP
rs543679067 3505 dbSNP
rs1339455141 3507 dbSNP
rs1228712426 3510 dbSNP
rs980734933 3510 dbSNP
rs1456083138 3512 dbSNP
rs748116729 3515 dbSNP
rs929699813 3516 dbSNP
rs986544515 3532 dbSNP
rs1379877712 3534 dbSNP
rs941389502 3536 dbSNP
rs1038332755 3540 dbSNP
rs769538508 3542 dbSNP
rs1368801916 3545 dbSNP
rs1307613215 3547 dbSNP
rs897280349 3549 dbSNP
rs942515207 3553 dbSNP
rs1375121188 3554 dbSNP
rs1163193432 3558 dbSNP
rs1423740122 3561 dbSNP
rs1390518872 3567 dbSNP
rs1415077021 3574 dbSNP
rs1462407036 3587 dbSNP
rs1039518177 3592 dbSNP
rs1250465825 3603 dbSNP
rs1205389810 3604 dbSNP
rs1328586681 3606 dbSNP
rs1263441451 3611 dbSNP
rs1220638283 3612 dbSNP
rs903759672 3618 dbSNP
rs1322105164 3623 dbSNP
rs1314703698 3625 dbSNP
rs1374762874 3636 dbSNP
rs184371900 3637 dbSNP
rs1226516963 3638 dbSNP
rs930016904 3646 dbSNP
rs1287871184 3648 dbSNP
rs1052844576 3650 dbSNP
rs1398995416 3651 dbSNP
rs1446047791 3653 dbSNP
rs1167684130 3654 dbSNP
rs1292007301 3654 dbSNP
rs1350857164 3654 dbSNP
rs368491435 3654 dbSNP
rs560649865 3654 dbSNP
rs60961013 3654 dbSNP
rs1310101441 3666 dbSNP
rs1337709263 3667 dbSNP
rs1242930894 3668 dbSNP
rs1283356037 3669 dbSNP
rs1356855717 3671 dbSNP
rs1215477911 3672 dbSNP
rs1182342029 3675 dbSNP
rs1256001579 3675 dbSNP
rs892496163 3677 dbSNP
rs890930210 3680 dbSNP
rs1399219157 3699 dbSNP
rs568445932 3701 dbSNP
rs1488654754 3703 dbSNP
rs1274862181 3704 dbSNP
rs1252085588 3717 dbSNP
rs1206722785 3718 dbSNP
rs1013604848 3724 dbSNP
rs1328470269 3726 dbSNP
rs1025039096 3740 dbSNP
rs905280525 3743 dbSNP
rs1229011676 3746 dbSNP
rs866596655 3746 dbSNP
rs1002340348 3747 dbSNP
rs1299407611 3749 dbSNP
rs1186461593 3750 dbSNP
rs1368708853 3752 dbSNP
rs1328401846 3753 dbSNP
rs1018635091 3754 dbSNP
rs1016468428 3763 dbSNP
rs1160555290 3772 dbSNP
rs529402355 3789 dbSNP
rs963963416 3792 dbSNP
rs1375448467 3800 dbSNP
rs1475777227 3803 dbSNP
rs1167562091 3804 dbSNP
rs1000571419 3807 dbSNP
rs528063146 3807 dbSNP
rs993788833 3830 dbSNP
rs1465584901 3831 dbSNP
rs1186517929 3842 dbSNP
rs1464279716 3843 dbSNP
rs1025720973 3862 dbSNP
rs1298781562 3871 dbSNP
rs772969845 3879 dbSNP
rs956448448 3882 dbSNP
rs1232776327 3887 dbSNP
rs1394493522 3887 dbSNP
rs139589058 3897 dbSNP
rs1306077365 3901 dbSNP
rs912277737 3922 dbSNP
rs559737236 3937 dbSNP
rs1433262457 3939 dbSNP
rs963794741 3957 dbSNP
rs975647639 3961 dbSNP
rs1384449052 3962 dbSNP
rs867744550 3974 dbSNP
rs766052599 3980 dbSNP
rs1052332849 3982 dbSNP
rs1466230894 3984 dbSNP
rs913826611 4003 dbSNP
rs367779651 4004 dbSNP
rs1252533230 4019 dbSNP
rs1248447744 4023 dbSNP
rs1482023005 4025 dbSNP
rs1440677469 4026 dbSNP
rs1199522652 4028 dbSNP
rs980277240 4048 dbSNP
rs1046441022 4053 dbSNP
rs1282663359 4062 dbSNP
rs1452374556 4070 dbSNP
rs533033362 4070 dbSNP
rs927590193 4074 dbSNP
rs1271175705 4080 dbSNP
rs941609920 4083 dbSNP
rs1339298070 4091 dbSNP
rs1334094415 4093 dbSNP
rs3191502 4099 dbSNP
rs905270832 4102 dbSNP
rs1486458198 4104 dbSNP
rs1190457766 4112 dbSNP
rs974051529 4120 dbSNP
rs773945304 4124 dbSNP
rs1305754542 4131 dbSNP
rs918548010 4134 dbSNP
rs930094295 4135 dbSNP
rs1169488337 4144 dbSNP
rs1471766006 4151 dbSNP
rs759049354 4154 dbSNP
rs12096 4155 dbSNP
rs1367753718 4161 dbSNP
rs1188179925 4163 dbSNP
rs1475546106 4165 dbSNP
rs1259732838 4178 dbSNP
rs1038258725 4180 dbSNP
rs767047771 4191 dbSNP
rs778336416 4196 dbSNP
rs1482878541 4210 dbSNP
rs1051587285 4214 dbSNP
rs1274147835 4217 dbSNP
rs1197860031 4245 dbSNP
rs1354706709 4249 dbSNP
rs762649008 4255 dbSNP
rs1234474148 4260 dbSNP
rs188682872 4261 dbSNP
rs1285970168 4271 dbSNP
rs1354820789 4271 dbSNP
rs1330479585 4275 dbSNP
rs1026546549 4278 dbSNP
rs1389771549 4280 dbSNP
rs1171797954 4281 dbSNP
rs1163725727 4282 dbSNP
rs878901158 4282 dbSNP
rs891195506 4282 dbSNP
rs954963499 4283 dbSNP
rs1472309639 4290 dbSNP
rs942549288 4292 dbSNP
rs1007838379 4293 dbSNP
rs1450196110 4293 dbSNP
rs1019275648 4297 dbSNP
rs535886683 4298 dbSNP
rs1051214 4303 dbSNP
rs1302349790 4314 dbSNP
rs150003138 4318 dbSNP
rs1376240967 4324 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuucCGGCAU-GUCGAGAAGGg 5'
              ||  || |  ||||||| 
Target 5' guguGCAAUAUCCCCUCUUCCa 3'
 		7 - 28
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 4131.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuucCGGCAU-GUCGAGAAGGg 5'
              ||  || |  ||||||| 
Target 5' guguGCAAUAUCCCCUCUUCCa 3'
 		7 - 28
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000296755.7 | 3UTR | AUAUUUGUGUGCAAUAUCCCCUCUUCCAUUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000296755.7 | 3UTR | AUAUUUGUGUGCAAUAUCCCCUCUUCCAUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
230 hsa-miR-6077 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060569 CCND1 cyclin D1 2 2
MIRT061579 BTG2 BTG anti-proliferation factor 2 2 4
MIRT074383 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT079444 FOXK2 forkhead box K2 2 4
MIRT082513 CALM3 calmodulin 3 2 10
MIRT086211 HOXD13 homeobox D13 2 2
MIRT097031 MAP1B microtubule associated protein 1B 2 4
MIRT119867 NRBP1 nuclear receptor binding protein 1 2 2
MIRT124576 PRRC2B proline rich coiled-coil 2B 2 2
MIRT150043 MIDN midnolin 2 4
MIRT152597 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT161909 FXR1 FMR1 autosomal homolog 1 2 2
MIRT189355 KPNA6 karyopherin subunit alpha 6 2 2
MIRT197844 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT219933 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 2
MIRT235611 ASXL1 additional sex combs like 1, transcriptional regulator 2 2
MIRT266233 PEX11B peroxisomal biogenesis factor 11 beta 2 2
MIRT266636 CHTOP chromatin target of PRMT1 2 2
MIRT270563 SETD1B SET domain containing 1B 2 2
MIRT273829 RPL41 ribosomal protein L41 2 2
MIRT309928 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT342370 PDIA3 protein disulfide isomerase family A member 3 2 2
MIRT369368 SF3B3 splicing factor 3b subunit 3 2 2
MIRT375181 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT402071 ATP6V1F ATPase H+ transporting V1 subunit F 2 4
MIRT445016 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445174 TFPI tissue factor pathway inhibitor 2 2
MIRT445453 EXT1 exostosin glycosyltransferase 1 2 2
MIRT446601 AKAP1 A-kinase anchoring protein 1 2 2
MIRT447806 EMX1 empty spiracles homeobox 1 2 2
MIRT449827 TLR4 toll like receptor 4 2 2
MIRT450678 SEMA4F ssemaphorin 4F 2 2
MIRT451774 USP36 ubiquitin specific peptidase 36 2 2
MIRT451827 ALDH3B1 aldehyde dehydrogenase 3 family member B1 2 2
MIRT452791 FAM136A family with sequence similarity 136 member A 2 2
MIRT453957 ENTHD1 ENTH domain containing 1 2 2
MIRT454413 SEPT6 septin 6 2 2
MIRT454666 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454734 ARSK arylsulfatase family member K 2 2
MIRT455329 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT455565 TRAF1 TNF receptor associated factor 1 2 2
MIRT455733 CDCA8 cell division cycle associated 8 2 2
MIRT455755 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT456156 TTF2 transcription termination factor 2 2 2
MIRT456629 ARMCX6 armadillo repeat containing, X-linked 6 2 2
MIRT456684 LDB1 LIM domain binding 1 2 2
MIRT457225 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457846 RNASEH2B ribonuclease H2 subunit B 2 4
MIRT457911 ZNF212 zinc finger protein 212 2 2
MIRT459482 CCL11 C-C motif chemokine ligand 11 2 2
MIRT459540 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 2 2
MIRT460002 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT460306 FLCN folliculin 2 2
MIRT460625 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460687 RNF157 ring finger protein 157 2 2
MIRT460751 FBLN5 fibulin 5 2 2
MIRT461028 SDF4 stromal cell derived factor 4 2 2
MIRT462243 PRSS16 protease, serine 16 2 2
MIRT462690 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT462872 ZXDB zinc finger, X-linked, duplicated B 2 2
MIRT463037 ZNF689 zinc finger protein 689 2 2
MIRT463242 ZIC5 Zic family member 5 2 2
MIRT463683 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT463778 YOD1 YOD1 deubiquitinase 2 2
MIRT463914 WNT3 Wnt family member 3 2 2
MIRT463949 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT464081 VPS4A vacuolar protein sorting 4 homolog A 2 2
MIRT465044 TTC14 tetratricopeptide repeat domain 14 2 2
MIRT465330 TPM3 tropomyosin 3 2 2
MIRT465657 TNPO2 transportin 2 2 2
MIRT466490 TEAD1 TEA domain transcription factor 1 2 2
MIRT467550 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 2 4
MIRT467770 SLC2A4 solute carrier family 2 member 4 2 2
MIRT469007 RNF41 ring finger protein 41 2 2
MIRT469032 RNF38 ring finger protein 38 2 6
MIRT469757 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT469794 RAB15 RAB15, member RAS oncogene family 2 2
MIRT471159 PHF12 PHD finger protein 12 2 2
MIRT471336 PERP PERP, TP53 apoptosis effector 2 2
MIRT471598 PAQR5 progestin and adipoQ receptor family member 5 2 8
MIRT471899 NUAK2 NUAK family kinase 2 2 2
MIRT471914 NSUN4 NOP2/Sun RNA methyltransferase family member 4 2 2
MIRT471932 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT472500 NACC2 NACC family member 2 2 2
MIRT472746 MTSS1L MTSS1L, I-BAR domain containing 2 2
MIRT473098 MLXIP MLX interacting protein 2 2
MIRT473820 MAP2K7 mitogen-activated protein kinase kinase 7 2 2
MIRT475423 ICK intestinal cell kinase 2 2
MIRT475649 HIF3A hypoxia inducible factor 3 alpha subunit 2 4
MIRT475761 HDLBP high density lipoprotein binding protein 2 2
MIRT476085 GRB2 growth factor receptor bound protein 2 2 2
MIRT476605 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT476784 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT477312 EPHB2 EPH receptor B2 2 2
MIRT479075 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 4
MIRT479871 CCDC6 coiled-coil domain containing 6 2 2
MIRT480028 CANX calnexin 2 6
MIRT480052 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT480890 BCL9L B-cell CLL/lymphoma 9 like 2 2
MIRT480927 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT481448 ARRB2 arrestin beta 2 2 2
MIRT482357 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT483260 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 2 4
MIRT483434 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483843 UNC5B unc-5 netrin receptor B 2 4
MIRT484343 EPN1 epsin 1 2 4
MIRT484707 RNF11 ring finger protein 11 2 4
MIRT485705 CBX7 chromobox 7 2 2
MIRT485947 BRSK1 BR serine/threonine kinase 1 2 2
MIRT486528 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486692 GLYR1 glyoxylate reductase 1 homolog 2 2
MIRT487838 CLSTN1 calsyntenin 1 2 4
MIRT487995 RXRB retinoid X receptor beta 2 2
MIRT488030 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT488479 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT488817 TBC1D28 TBC1 domain family member 28 2 2
MIRT488884 ASTN2 astrotactin 2 2 4
MIRT490493 GLRA3 glycine receptor alpha 3 2 2
MIRT490878 OSBP oxysterol binding protein 2 2
MIRT490926 GRIN2D glutamate ionotropic receptor NMDA type subunit 2D 2 4
MIRT491036 ALPK3 alpha kinase 3 2 2
MIRT491412 SSPN sarcospan 2 4
MIRT491583 USB1 U6 snRNA biogenesis phosphodiesterase 1 2 2
MIRT494037 DUSP7 dual specificity phosphatase 7 2 2
MIRT495713 PADI1 peptidyl arginine deiminase 1 2 2
MIRT498826 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 8
MIRT498930 TMEM106B transmembrane protein 106B 2 8
MIRT499201 TJAP1 tight junction associated protein 1 2 2
MIRT499586 INTU inturned planar cell polarity protein 2 4
MIRT499678 MRE11A MRE11 homolog, double strand break repair nuclease 2 4
MIRT499769 SLC29A2 solute carrier family 29 member 2 2 2
MIRT500120 ZNF106 zinc finger protein 106 2 4
MIRT501739 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT503315 FICD FIC domain containing 2 4
MIRT503449 PNMA2 paraneoplastic Ma antigen 2 2 6
MIRT507136 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT511906 FKBP1A FK506 binding protein 1A 2 2
MIRT513103 DYNAP dynactin associated protein 2 2
MIRT520500 TRAM2 translocation associated membrane protein 2 2 6
MIRT524337 CRIM1 cysteine rich transmembrane BMP regulator 1 2 6
MIRT525321 SNX29 sorting nexin 29 2 2
MIRT526804 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT530935 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT537471 FAM63B MINDY lysine 48 deubiquitinase 2 2 2
MIRT538696 CASP16 caspase 16, pseudogene 2 4
MIRT541101 RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2 2
MIRT545632 GGCX gamma-glutamyl carboxylase 2 2
MIRT545660 TMEM97 transmembrane protein 97 2 4
MIRT545919 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT546411 SPRED3 sprouty related EVH1 domain containing 3 2 2
MIRT546520 SERTAD3 SERTA domain containing 3 2 2
MIRT547205 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT548142 FYCO1 FYVE and coiled-coil domain containing 1 2 2
MIRT548961 CCNT2 cyclin T2 2 2
MIRT549400 AKAP11 A-kinase anchoring protein 11 2 2
MIRT551661 KIAA1143 KIAA1143 2 4
MIRT552470 ZNF275 zinc finger protein 275 2 4
MIRT557120 HOXA3 homeobox A3 2 2
MIRT557324 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT557442 GTPBP2 GTP binding protein 2 2 2
MIRT557680 GATA6 GATA binding protein 6 2 2
MIRT559844 RBM23 RNA binding motif protein 23 2 2
MIRT559872 ATXN3 ataxin 3 2 2
MIRT559929 SOD2 superoxide dismutase 2 2 2
MIRT559977 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT560091 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT560103 ZNF557 zinc finger protein 557 2 2
MIRT560118 RAB6C RAB6C, member RAS oncogene family 2 2
MIRT560126 PRDM6 PR/SET domain 6 2 2
MIRT560175 COA1 cytochrome c oxidase assembly factor 1 homolog 2 2
MIRT560261 TMEM236 transmembrane protein 236 2 2
MIRT560311 EFHD2 EF-hand domain family member D2 2 2
MIRT560372 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT560425 ANGPTL3 angiopoietin like 3 2 2
MIRT560467 SMIM9 small integral membrane protein 9 2 2
MIRT560471 ENSA endosulfine alpha 2 2
MIRT560496 KCNJ10 potassium voltage-gated channel subfamily J member 10 2 2
MIRT560509 POGK pogo transposable element derived with KRAB domain 2 2
MIRT560554 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT560560 MYLK myosin light chain kinase 2 2
MIRT560593 FAM114A1 family with sequence similarity 114 member A1 2 2
MIRT560610 TRIM38 tripartite motif containing 38 2 2
MIRT560615 ANKRD36 ankyrin repeat domain 36 2 2
MIRT560808 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT560888 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT560914 PA2G4 proliferation-associated 2G4 2 2
MIRT560949 POTED POTE ankyrin domain family member D 2 2
MIRT560958 WRN Werner syndrome RecQ like helicase 2 2
MIRT561001 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT561080 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT561104 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT561198 LDHD lactate dehydrogenase D 2 2
MIRT561207 ZXDA zinc finger, X-linked, duplicated A 2 2
MIRT561286 ZCCHC14 zinc finger CCHC-type containing 14 2 2
MIRT561370 UBXN2B UBX domain protein 2B 2 2
MIRT561488 SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit 2 2
MIRT561516 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT561677 RAD54L2 RAD54 like 2 2 2
MIRT561838 NREP neuronal regeneration related protein 2 2
MIRT561959 LSM12 LSM12 homolog 2 2
MIRT562342 EXOSC2 exosome component 2 2 2
MIRT562386 EN2 engrailed homeobox 2 2 2
MIRT562399 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT562477 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT563631 ZNF460 zinc finger protein 460 2 2
MIRT563991 SLFN11 schlafen family member 11 2 2
MIRT564294 MED26 mediator complex subunit 26 2 2
MIRT565594 SLC35G1 solute carrier family 35 member G1 2 2
MIRT567200 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT567410 GOLPH3L golgi phosphoprotein 3 like 2 2
MIRT568367 ATXN1 ataxin 1 2 2
MIRT569870 KLK10 kallikrein related peptidase 10 2 2
MIRT571258 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT571688 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT572702 SRPK1 SRSF protein kinase 1 2 2
MIRT573931 CNTNAP2 contactin associated protein like 2 2 2
MIRT573965 LINGO1 leucine rich repeat and Ig domain containing 1 2 2
MIRT618154 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT619123 CD40LG CD40 ligand 2 2
MIRT620228 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT640243 DERL2 derlin 2 2 2
MIRT652912 SYNPO2L synaptopodin 2 like 2 2
MIRT661918 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT697846 UBE2Z ubiquitin conjugating enzyme E2 Z 2 2
MIRT701989 MIER3 MIER family member 3 2 2
MIRT702213 LPCAT1 lysophosphatidylcholine acyltransferase 1 2 2
MIRT705575 ARHGEF12 Rho guanine nucleotide exchange factor 12 2 2
MIRT708500 FAM9C family with sequence similarity 9 member C 2 2
MIRT716273 NUP85 nucleoporin 85 2 2
MIRT723698 CKS2 CDC28 protein kinase regulatory subunit 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6077 Anlotinib 25017411 NSC832523 sensitive Low Lung Adenocarcinoma cell line (A549, PDC)
hsa-miR-6077 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6077 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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