miRTarBase - #MIRT097311


—
pre-miRNA Information
pre-miRNA hsa-mir-4307   
Genomic Coordinates chr14: 26908642 - 26908725
Description Homo sapiens miR-4307 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4307
Sequence 56| AAUGUUUUUUCCUGUUUCC |74
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1056441032 1 dbSNP
rs776987575 3 dbSNP
rs948027524 8 dbSNP
rs930210474 12 dbSNP
rs191460273 13 dbSNP
rs538831777 14 dbSNP
rs1158802910 15 dbSNP
rs1047679599 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol AGGF1   
Synonyms GPATC7, GPATCH7, HSU84971, HUS84971, VG5Q
Description angiogenic factor with G-patch and FHA domains 1
Transcript NM_018046   
Expression
Putative miRNA Targets on AGGF1
3'UTR of AGGF1
(miRNA target sites are highlighted)		 
>AGGF1|NM_018046|3'UTR
   1 AGGCTAATCATAGAAAAAAAACCTCTAGTTTTTTTAAAAATAGAATTTGGAAACTTATTTTTTCTCCCCAAAAGAATCAG
  81 CAGCACAGGGGAACTATGTCACAGTTTACCTCTTCCTGATTCAGAAATGTGTATGGTTTGCAGCTTTTAAAAACCATTTT
 161 TTTAAAACTAATAAATAGTGACTGAACCAATTTATGCAGTAAATAGACTAAAGTTCACAGGGCACGGATGAGTTTATCAA
 241 ACTTCGTTATTTTATCTTGTCATTTACAACATCCATATAAGCAACTAGCCATATAAGCAAAATTCATAGAACTACTAATG
 321 ACTTAAGTGTACATCTGTTCTTGTCTCCATATATTCATGTAAGATGCACAACAAAAGAAACATCAGAAGTTTATAAAAAT
 401 AAATCTGACTATATGCATCCTCATTTATTCCCTTTAGAACCTAGGTAAAAAATGTTGCGAAAACATGGGTAGTGGCGCAT
 481 ACATTTTGTTATCCTTGAAATAGCCTAAGTAATGTTATTGAAGAACTAATGAACAGGTAACATATTGTAGAAAATTAGTC
 561 TTTCATTGTTTTCTTCTGTGAAGAATCTGTTGCTATGTACTGTATATTCAGCATTTATATTTGGTTTGTTTCATAGCTAA
 641 TGAGGTATTTAGATATGAACAACTGAATACATATTGAAATAGTGTGCTGGCTTTTGTAGTTTTGATAAAGACCATTGCAG
 721 GCAATGGAATTGTGCCAGAGAAATCTGATTTCTAGTACAAAAGGAATACTTAGCCAGGGCCTCAAGCTCAAGATACTTAT
 801 TGAAAACATCCTCAATTGCAATAAAAACATTATAACATGAAAAAGAGTGATTTTTTGAACCGGTGATTTAAATGTATTGA
 881 TCTGCTTTGAATTTTCAAGCAGCCAGAATTTTCTAGTTTAAATTGGCAGAGTTATAACAAAGGAGAGCCTCAAATATTAG
 961 ACAATTGCAGTGCGGCTTTCTGGGCACAGGTGTCACTGCTCTGCCACCTATCACTATTCTTTTTCTGTTCAGTTTTTCTC
1041 TCAGGTGTTTGCTGGGAAATTAACACTGGAACTGACCCTTTTCTGGCAGTGAATGTAAGCTCTAGCTCCCCCATCTACTA
1121 TAAAGAAATGTCTTCGAGATGTAGAAATAAGGAATATTCTGAAAATAAAAATTATACAGTAGTAAAGATAATTCAGAAAG
1201 AAAAAGCTACCTGTTAGAATTTCCAGTCTAAATGGCACAGGGTAGTTACGGAGAAAAGGGGATGGAGAAGGAGAAACTAT
1281 GACTAAAGATGAGAGGTATGAACGAGTTGTCAGGTTCCTATGGGCTTAAGCTAGGACAATCAGGCCCTAAACTCCAAATT
1361 TGGATAAAATATCTCTTTGCATTCTTCTTGGCCACCTGCATAGTCTGACACATACGTATGTACAGTTAGACTTGCAGGCT
1441 GCAGGAGTGCCCTGCATTGTTTTCTTTTAATTAGAAATAAAAAGTATTAGTCTAAATGTGGTTCTGGTGCTGGTGCCCTG
1521 TATATATGTAACAATATAGGACCCCTCCAAATAGGTTTTGCTTCTGGTGAATCTTGGTCATTGGGTTAGTATATGACTGT
1601 CTATAATATTTTCCATTTGTATTATTATATTGGGGAAAACATTTTTTATCATTTTCTATTAAGAAAATGGAAAACTTAAA
1681 TATGGTGTTAAAAATGGAAATATATGTGATATTTGCATTATTAAACCCCTTTGCAGATCTAAAGTCTCAGGGTTCCACTA
1761 TTAGTGGTTAAAGTACTGAATAATGTCTGGGTCTATTTCCATCTGTAAAATAAGAATATTTGTCTCACGTGTCTGTCATG
1841 AATAGCAAATGAGAAAATGTATATAAAAGCACTTTGTAAATTGTAAAAGTAGTACAGATGTGAGCTTCTATTTGTTTAGA
1921 AGCATAAATGTGAATTATATACAGTTTGAATTTTGCATAAATTTTTTGTGTCTAATTTTAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccUUUGUCCUUUUUUGUAa 5'
            | |: ||::||||||| 
Target 5' ttATATTGGGGAAAACATt 3'
 1625 - 1643 157.00 -10.70
2 
miRNA  3' ccuUUGUCCU--UUUUUGUAa 5'
             ||: | |  |||||||| 
Target 5' ctcAATTGCAATAAAAACATt 3'
 811 - 831 150.00 -5.30
3 
miRNA  3' ccuUUGUCCUUUUUUGUAa 5'
             ||||  ||:|||||| 
Target 5' cacAACA-AAAGAAACATc 3'
 367 - 384 143.00 -6.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20101401 22 COSMIC
COSN30713705 22 COSMIC
COSN30517676 40 COSMIC
COSN30187040 67 COSMIC
COSN30462594 111 COSMIC
COSN30531756 268 COSMIC
COSN30174424 385 COSMIC
COSN5079045 412 COSMIC
COSN31490908 423 COSMIC
COSN31584396 478 COSMIC
COSN31523492 502 COSMIC
COSN22503778 719 COSMIC
COSN26670194 730 COSMIC
COSN31566620 741 COSMIC
COSN31490699 765 COSMIC
COSN31597525 807 COSMIC
COSN31571628 816 COSMIC
COSN31547470 846 COSMIC
COSN8229287 935 COSMIC
COSN14753622 1136 COSMIC
COSN27754412 1280 COSMIC
COSN7580053 1603 COSMIC
COSN20547729 1688 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762096670 2 dbSNP
rs1239175870 3 dbSNP
rs781333773 5 dbSNP
rs750207845 6 dbSNP
rs1000462108 8 dbSNP
rs755898759 12 dbSNP
rs765334268 13 dbSNP
rs779925481 13 dbSNP
rs34239222 14 dbSNP
rs780006280 14 dbSNP
rs748839256 17 dbSNP
rs751492210 17 dbSNP
rs1033987615 22 dbSNP
rs397733074 22 dbSNP
rs1162520389 23 dbSNP
rs768304470 25 dbSNP
rs1465306013 27 dbSNP
rs1420804311 29 dbSNP
rs1331725174 36 dbSNP
rs778393247 40 dbSNP
rs776959483 42 dbSNP
rs1456644067 43 dbSNP
rs1322857845 44 dbSNP
rs537452368 46 dbSNP
rs773633417 49 dbSNP
rs958378873 52 dbSNP
rs1355656290 56 dbSNP
rs916607691 65 dbSNP
rs762367141 82 dbSNP
rs544088027 89 dbSNP
rs374551408 96 dbSNP
rs982253513 97 dbSNP
rs1025834321 101 dbSNP
rs1238390900 112 dbSNP
rs1374227268 113 dbSNP
rs554228499 121 dbSNP
rs1024050401 123 dbSNP
rs574491554 126 dbSNP
rs1366597836 134 dbSNP
rs1386850783 135 dbSNP
rs907919022 145 dbSNP
rs1459707597 157 dbSNP
rs1292361340 164 dbSNP
rs1367500332 165 dbSNP
rs951198604 179 dbSNP
rs1291278273 185 dbSNP
rs983020884 197 dbSNP
rs1421495358 198 dbSNP
rs1297769828 205 dbSNP
rs909722880 209 dbSNP
rs962915899 210 dbSNP
rs1157863899 211 dbSNP
rs1437533538 220 dbSNP
rs539923425 226 dbSNP
rs919856329 227 dbSNP
rs931249792 239 dbSNP
rs750504780 246 dbSNP
rs1049656089 247 dbSNP
rs1315920944 257 dbSNP
rs371000100 262 dbSNP
rs1008299117 263 dbSNP
rs10942807 268 dbSNP
rs1275807678 275 dbSNP
rs375647429 276 dbSNP
rs911974160 277 dbSNP
rs1298615239 278 dbSNP
rs902219208 283 dbSNP
rs779931720 289 dbSNP
rs1417633719 291 dbSNP
rs1404167054 292 dbSNP
rs999715423 295 dbSNP
rs946153767 306 dbSNP
rs1172931587 310 dbSNP
rs1245692606 316 dbSNP
rs1042245740 322 dbSNP
rs1448290684 323 dbSNP
rs1032443973 328 dbSNP
rs1478155905 329 dbSNP
rs904703918 332 dbSNP
rs1263108818 333 dbSNP
rs551243069 333 dbSNP
rs1183824614 334 dbSNP
rs1000832856 336 dbSNP
rs577553288 346 dbSNP
rs1056039733 350 dbSNP
rs1486934036 354 dbSNP
rs1279844741 355 dbSNP
rs894761126 368 dbSNP
rs1343897746 369 dbSNP
rs748988557 382 dbSNP
rs1024018360 384 dbSNP
rs73125847 387 dbSNP
rs766645383 390 dbSNP
rs751691592 393 dbSNP
rs183509809 397 dbSNP
rs1017153791 400 dbSNP
rs1163096041 405 dbSNP
rs962554718 410 dbSNP
rs1349846490 412 dbSNP
rs907971758 424 dbSNP
rs1173007882 431 dbSNP
rs1466334809 437 dbSNP
rs1423081151 439 dbSNP
rs1191571241 441 dbSNP
rs550116071 445 dbSNP
rs975243667 448 dbSNP
rs1238520656 451 dbSNP
rs1187316523 452 dbSNP
rs1323079151 453 dbSNP
rs754992356 453 dbSNP
rs962412087 459 dbSNP
rs973473824 460 dbSNP
rs1256922584 463 dbSNP
rs1216218449 465 dbSNP
rs1434464648 466 dbSNP
rs1383394335 472 dbSNP
rs1284659540 476 dbSNP
rs919782652 477 dbSNP
rs931133872 478 dbSNP
rs921172073 480 dbSNP
rs955330067 484 dbSNP
rs1447855856 487 dbSNP
rs1399793364 488 dbSNP
rs1168658393 490 dbSNP
rs1407102665 492 dbSNP
rs1415169794 493 dbSNP
rs778962851 506 dbSNP
rs747727251 508 dbSNP
rs1049706544 512 dbSNP
rs1311781897 518 dbSNP
rs911093952 535 dbSNP
rs943718096 542 dbSNP
rs987393376 546 dbSNP
rs747003423 550 dbSNP
rs755192693 556 dbSNP
rs911906719 566 dbSNP
rs1452777639 579 dbSNP
rs1289965697 583 dbSNP
rs1241117772 590 dbSNP
rs946095888 594 dbSNP
rs1266097836 596 dbSNP
rs1354139319 600 dbSNP
rs1464101590 601 dbSNP
rs532000521 602 dbSNP
rs771693869 607 dbSNP
rs936144029 610 dbSNP
rs1244647471 619 dbSNP
rs138983654 620 dbSNP
rs1329486653 622 dbSNP
rs1056010369 629 dbSNP
rs1180877202 630 dbSNP
rs1413550103 631 dbSNP
rs770302894 632 dbSNP
rs1014519260 642 dbSNP
rs1053449422 643 dbSNP
rs1419985459 645 dbSNP
rs535294513 646 dbSNP
rs542220559 654 dbSNP
rs188450969 663 dbSNP
rs1023845434 667 dbSNP
rs906755109 668 dbSNP
rs1337439940 672 dbSNP
rs776224474 674 dbSNP
rs1246833447 675 dbSNP
rs886794415 680 dbSNP
rs1489847573 681 dbSNP
rs1004306968 682 dbSNP
rs1288009315 683 dbSNP
rs1016669603 686 dbSNP
rs1302425913 695 dbSNP
rs879880703 703 dbSNP
rs1221215190 710 dbSNP
rs1373793862 718 dbSNP
rs193234307 725 dbSNP
rs962054527 727 dbSNP
rs1434350216 731 dbSNP
rs746675866 733 dbSNP
rs1419485299 736 dbSNP
rs184046266 739 dbSNP
rs952530006 746 dbSNP
rs376113435 755 dbSNP
rs985251032 759 dbSNP
rs911156502 780 dbSNP
rs1415859981 781 dbSNP
rs996632449 788 dbSNP
rs1425382685 791 dbSNP
rs1190146467 793 dbSNP
rs943922146 794 dbSNP
rs1286440956 798 dbSNP
rs868323783 805 dbSNP
rs866977822 809 dbSNP
rs753670647 819 dbSNP
rs1487916129 824 dbSNP
rs1258798201 829 dbSNP
rs955257130 834 dbSNP
rs527665895 838 dbSNP
rs1313033945 844 dbSNP
rs934994197 851 dbSNP
rs1221779416 858 dbSNP
rs547612577 861 dbSNP
rs893518925 862 dbSNP
rs570915925 863 dbSNP
rs1019340970 865 dbSNP
rs967386266 877 dbSNP
rs977855051 883 dbSNP
rs1466825906 886 dbSNP
rs1359391944 892 dbSNP
rs1309879828 899 dbSNP
rs1174832261 901 dbSNP
rs1467894249 903 dbSNP
rs906690829 904 dbSNP
rs759050037 906 dbSNP
rs1477479650 913 dbSNP
rs1015176490 918 dbSNP
rs1183404831 923 dbSNP
rs936111671 938 dbSNP
rs991618183 942 dbSNP
rs1237125106 955 dbSNP
rs916090711 958 dbSNP
rs143884704 965 dbSNP
rs1320243460 966 dbSNP
rs1258841750 967 dbSNP
rs994803665 968 dbSNP
rs1045962766 969 dbSNP
rs887383828 970 dbSNP
rs939692400 974 dbSNP
rs764873011 975 dbSNP
rs1250302425 981 dbSNP
rs1038482870 997 dbSNP
rs1472571681 1000 dbSNP
rs1018553085 1001 dbSNP
rs1401988826 1002 dbSNP
rs898204626 1006 dbSNP
rs977114005 1007 dbSNP
rs923872930 1009 dbSNP
rs996559198 1013 dbSNP
rs935000799 1017 dbSNP
rs1412861637 1037 dbSNP
rs989083338 1038 dbSNP
rs148208532 1045 dbSNP
rs113215682 1046 dbSNP
rs1008039489 1048 dbSNP
rs947836347 1053 dbSNP
rs1044804341 1059 dbSNP
rs1175705931 1062 dbSNP
rs1355321423 1077 dbSNP
rs1020857289 1079 dbSNP
rs1246239687 1087 dbSNP
rs537713878 1088 dbSNP
rs554572708 1094 dbSNP
rs1321623044 1105 dbSNP
rs1242722476 1110 dbSNP
rs1305918213 1113 dbSNP
rs928163720 1121 dbSNP
rs967066054 1122 dbSNP
rs977449767 1126 dbSNP
rs1458382735 1131 dbSNP
rs3183475 1136 dbSNP
rs957409472 1137 dbSNP
rs1161466503 1143 dbSNP
rs745395453 1151 dbSNP
rs533773152 1153 dbSNP
rs1178327813 1155 dbSNP
rs553632069 1171 dbSNP
rs991587779 1178 dbSNP
rs186762654 1179 dbSNP
rs889105296 1195 dbSNP
rs1202546432 1198 dbSNP
rs916020056 1200 dbSNP
rs1008079292 1227 dbSNP
rs1272963084 1231 dbSNP
rs1219265711 1234 dbSNP
rs368164467 1236 dbSNP
rs535155527 1241 dbSNP
rs1354786137 1243 dbSNP
rs879022347 1250 dbSNP
rs771447493 1251 dbSNP
rs1333590231 1260 dbSNP
rs965622200 1263 dbSNP
rs1386795595 1269 dbSNP
rs1248963391 1274 dbSNP
rs1344817326 1274 dbSNP
rs997994788 1280 dbSNP
rs908790408 1281 dbSNP
rs775966417 1286 dbSNP
rs1190661286 1292 dbSNP
rs1031354869 1296 dbSNP
rs940269106 1297 dbSNP
rs956595679 1304 dbSNP
rs1038005266 1305 dbSNP
rs546427444 1321 dbSNP
rs932379947 1345 dbSNP
rs1049452145 1346 dbSNP
rs969025701 1359 dbSNP
rs556759023 1361 dbSNP
rs1203714044 1376 dbSNP
rs1348125757 1378 dbSNP
rs576828293 1381 dbSNP
rs1257333070 1382 dbSNP
rs1233344826 1385 dbSNP
rs191610137 1393 dbSNP
rs927704350 1394 dbSNP
rs1401817571 1401 dbSNP
rs879937038 1402 dbSNP
rs763395823 1413 dbSNP
rs1008055207 1416 dbSNP
rs1042656666 1417 dbSNP
rs764165825 1432 dbSNP
rs146226705 1436 dbSNP
rs1469480225 1442 dbSNP
rs762740391 1450 dbSNP
rs567253258 1473 dbSNP
rs1348028435 1478 dbSNP
rs930909056 1482 dbSNP
rs1049323483 1492 dbSNP
rs1478452094 1503 dbSNP
rs751554497 1505 dbSNP
rs1435184889 1506 dbSNP
rs957338806 1510 dbSNP
rs35751685 1515 dbSNP
rs183787629 1516 dbSNP
rs1200731734 1519 dbSNP
rs1322367785 1523 dbSNP
rs1007550478 1525 dbSNP
rs1040867104 1527 dbSNP
rs1012949766 1531 dbSNP
rs1269468212 1538 dbSNP
rs1023045318 1540 dbSNP
rs541415087 1544 dbSNP
rs1296333577 1556 dbSNP
rs981594279 1561 dbSNP
rs564246131 1572 dbSNP
rs11555528 1584 dbSNP
rs1466154451 1594 dbSNP
rs1010819822 1601 dbSNP
rs551969685 1603 dbSNP
rs1183332085 1604 dbSNP
rs1460618652 1606 dbSNP
rs1450359635 1609 dbSNP
rs1200003335 1610 dbSNP
rs1022162115 1617 dbSNP
rs969471123 1627 dbSNP
rs73764645 1629 dbSNP
rs1248746781 1632 dbSNP
rs1451342171 1636 dbSNP
rs1284610050 1646 dbSNP
rs1244910079 1648 dbSNP
rs1186911781 1653 dbSNP
rs974747438 1657 dbSNP
rs1311653184 1680 dbSNP
rs1447788781 1682 dbSNP
rs927719907 1683 dbSNP
rs1326906005 1700 dbSNP
rs73764646 1702 dbSNP
rs548226477 1704 dbSNP
rs149971031 1707 dbSNP
rs1383012968 1710 dbSNP
rs1180199324 1712 dbSNP
rs1411311325 1713 dbSNP
rs1157120978 1721 dbSNP
rs1404720621 1722 dbSNP
rs1231860917 1728 dbSNP
rs2545 1740 dbSNP
rs188519238 1756 dbSNP
rs879544990 1761 dbSNP
rs912311055 1781 dbSNP
rs1319544916 1785 dbSNP
rs1357095492 1788 dbSNP
rs1287874291 1792 dbSNP
rs570575253 1794 dbSNP
rs1241207748 1796 dbSNP
rs1372827736 1802 dbSNP
rs1383039738 1806 dbSNP
rs1246035020 1815 dbSNP
rs910773428 1824 dbSNP
rs116487667 1829 dbSNP
rs192736319 1830 dbSNP
rs901828469 1832 dbSNP
rs1423289817 1840 dbSNP
rs934786652 1848 dbSNP
rs1159606683 1850 dbSNP
rs1053131937 1854 dbSNP
rs1406739996 1861 dbSNP
rs902359857 1862 dbSNP
rs1268972191 1865 dbSNP
rs1198676881 1867 dbSNP
rs1010662948 1872 dbSNP
rs574225066 1872 dbSNP
rs576747560 1876 dbSNP
rs1206886282 1879 dbSNP
rs1221024253 1880 dbSNP
rs1345892250 1884 dbSNP
rs536040888 1901 dbSNP
rs905083257 1906 dbSNP
rs1299228685 1911 dbSNP
rs555836927 1911 dbSNP
rs1430399910 1915 dbSNP
rs1053688440 1922 dbSNP
rs1344241713 1926 dbSNP
rs895095014 1939 dbSNP
rs1012917299 1940 dbSNP
rs1366515640 1941 dbSNP
rs1022973454 1943 dbSNP
rs572655948 1944 dbSNP
rs971437270 1953 dbSNP
rs1003381709 1956 dbSNP
rs1015737803 1957 dbSNP
rs145198988 1958 dbSNP
rs1186899777 1983 dbSNP
rs777049494 1983 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000312916.7 | 3UTR | UCAAGCUCAAGAUACUUAUUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
107 hsa-miR-4307 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT091681 RARB retinoic acid receptor beta 2 6
MIRT097311 AGGF1 angiogenic factor with G-patch and FHA domains 1 2 2
MIRT099878 SOX4 SRY-box 4 2 2
MIRT114514 ARF6 ADP ribosylation factor 6 2 2
MIRT163479 WNT5A Wnt family member 5A 2 2
MIRT186633 COX20 COX20, cytochrome c oxidase assembly factor 2 8
MIRT194921 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT230189 AKAP17A A-kinase anchoring protein 17A 2 2
MIRT281397 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT328018 RLIM ring finger protein, LIM domain interacting 2 2
MIRT354896 SEC62 SEC62 homolog, preprotein translocation factor 2 2
MIRT361422 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT442526 MOB3B MOB kinase activator 3B 2 2
MIRT442629 NUDT12 nudix hydrolase 12 2 2
MIRT442685 SLC39A9 solute carrier family 39 member 9 2 2
MIRT444131 BRCA2 BRCA2, DNA repair associated 2 2
MIRT444174 RBM7 RNA binding motif protein 7 2 2
MIRT446045 TPR translocated promoter region, nuclear basket protein 2 2
MIRT447984 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT460527 S100A11 S100 calcium binding protein A11 2 4
MIRT466861 STX6 syntaxin 6 2 2
MIRT468806 SAP18 Sin3A associated protein 18 2 6
MIRT480269 C8orf4 chromosome 8 open reading frame 4 2 2
MIRT493119 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT499168 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 8
MIRT500507 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT503021 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT505314 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT506123 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT509346 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 4
MIRT509446 POU2F2 POU class 2 homeobox 2 2 6
MIRT509598 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT516008 GPN2 GPN-loop GTPase 2 2 2
MIRT516120 SRPX2 sushi repeat containing protein, X-linked 2 2 4
MIRT522126 NELL2 neural EGFL like 2 2 2
MIRT523018 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 4
MIRT524015 DONSON downstream neighbor of SON 2 2
MIRT526307 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526789 SGCD sarcoglycan delta 2 2
MIRT529141 CLCC1 chloride channel CLIC like 1 2 2
MIRT531336 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT531573 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT531831 MTPAP mitochondrial poly(A) polymerase 2 2
MIRT534994 PRR11 proline rich 11 2 6
MIRT535419 PDZD8 PDZ domain containing 8 2 2
MIRT535534 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT536649 INIP INTS3 and NABP interacting protein 2 2
MIRT543498 MDM2 MDM2 proto-oncogene 2 4
MIRT545392 PM20D2 peptidase M20 domain containing 2 2 2
MIRT545881 ZNF200 zinc finger protein 200 2 4
MIRT547931 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT548109 GDAP2 ganglioside induced differentiation associated protein 2 2 2
MIRT549370 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2 2
MIRT549934 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550455 MYADM myeloid associated differentiation marker 2 4
MIRT550640 AR androgen receptor 2 2
MIRT550815 FAM229B family with sequence similarity 229 member B 2 2
MIRT551258 OPCML opioid binding protein/cell adhesion molecule like 2 2
MIRT551768 MED21 mediator complex subunit 21 2 2
MIRT552214 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT555472 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556008 MZT1 mitotic spindle organizing protein 1 2 2
MIRT557878 FEM1B fem-1 homolog B 2 4
MIRT558486 DBN1 drebrin 1 2 2
MIRT560859 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561521 AZF1 azoospermia factor 1 2 2
MIRT562090 KIAA0895 KIAA0895 2 2
MIRT563065 ZNF28 zinc finger protein 28 2 2
MIRT563487 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT564286 CTCF CCCTC-binding factor 2 2
MIRT565627 SLC16A1 solute carrier family 16 member 1 2 2
MIRT566508 PAWR pro-apoptotic WT1 regulator 2 2
MIRT566978 LBR lamin B receptor 2 2
MIRT567180 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568432 GDNF glial cell derived neurotrophic factor 2 2
MIRT570092 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 2
MIRT570565 PABPC1 poly(A) binding protein cytoplasmic 1 2 2
MIRT571385 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572053 GPATCH8 G-patch domain containing 8 2 2
MIRT572333 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT574528 PEG10 paternally expressed 10 2 2
MIRT575818 Igfbp4 insulin-like growth factor binding protein 4 2 2
MIRT608587 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 4
MIRT610442 TSPAN15 tetraspanin 15 2 2
MIRT614994 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT615014 ERGIC2 ERGIC and golgi 2 2 2
MIRT615078 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT616180 SYT7 synaptotagmin 7 2 2
MIRT617191 CDH13 cadherin 13 2 2
MIRT617287 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT618714 ESD esterase D 2 2
MIRT621825 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT624139 DLX3 distal-less homeobox 3 2 2
MIRT625991 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT626344 BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 2 2
MIRT634899 ZNF701 zinc finger protein 701 2 2
MIRT637848 SLC2A9 solute carrier family 2 member 9 2 2
MIRT639514 FYB FYN binding protein 1 2 2
MIRT642468 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT653670 SLC26A7 solute carrier family 26 member 7 2 2
MIRT655192 PHAX phosphorylated adaptor for RNA export 2 2
MIRT657011 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT661008 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT665816 TMEM161B transmembrane protein 161B 2 2
MIRT683852 ZNF208 zinc finger protein 208 2 2
MIRT700436 PURB purine rich element binding protein B 2 2
MIRT700517 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4307 Tripterygium wilfordii Hook F resistant tissue
hsa-miR-4307 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4307 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4307 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine sensitive cell line (Bats-72)

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