miRTarBase - #MIRT100913


—
pre-miRNA Information
pre-miRNA hsa-mir-3607   
Genomic Coordinates chr5: 86620497 - 86620575
Description Homo sapiens miR-3607 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3607-3p
Sequence 51| ACUGUAAACGCUUUCUGAUG |70
Evidence Experimental
Experiments Illumina
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CD2AP   
Synonyms CMS
Description CD2 associated protein
Transcript NM_012120   
Expression
Putative miRNA Targets on CD2AP
3'UTR of CD2AP
(miRNA target sites are highlighted)		 
>CD2AP|NM_012120|3'UTR
   1 GTGGTGTGGACCTGGTGTTCATAATGTTCCAGGGATTCAGAAGCAACGCTATGAACTTCAGCTGACTTGTTACTTAAAAA
  81 TTGTGAATTCTGTTGTTGTGATAAATATGAGCAAATGAAGTGTAATATCTATAGAAAAGTAGAGTGAGGGTGAATTTATA
 161 TATATATTTTGTTTTGCCAATATGAAGAAAAAGAGGCCTTATTTCTTAACTGTGCTGGGATTGCAAACACTTTTTAAAAA
 241 ATTGTTTGCTTGAAAATACTACTGAATATAAATAAGAATGTGCACAGTAGTTTTTTTATTGAAACTTGTATTATTTTTAA
 321 AGAGATCTATACTATAAATATGGTGATATATTTACAAGTAATCTGTTAAGATATACTATTTGAGAGGGACAGATTAGCCT
 401 TTTAGTAACTATAGTCACTACTTTTTCCATAATGCATAAGGGATATAAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
 481 TGTGTGTGTGTGTGTATATATATATATATATTTTTACTTTTATCCTCTTACCGAAGGTTACACTGTTGTGCCTGTTTGTC
 561 TGCAATGCTGTTTATATTTTGGGTGATGAAATAGGAGTTTCCTAGCTATATAAACCAGATTACTCACCCATGCATATAGT
 641 AAGAACTAATGAATAATCAAAATAATTTCATCAACTTTTAGAATATTTTATGTTGCTTGCACTATAGGAGTCATAAAAGG
 721 AACTTAGTTAAAATATGTTGGATTGTTAAACATTTGGGGAAATATGAACTGTATTTTAAATTTGTTAGGTCTGAAGAATC
 801 TAAAACTGTTAATTTAACCCTTAACTTGTGCCTAGAAACTACAGCACATATAAAATATGTAAACACCAGCCTGTTGCTGT
 881 ACTTTTCTGCTTATTTTACAGCCTCAAATATTTCTCATTATCTTGTCACTTAGTTCTTCATGTTTCTCCTTCTGACTTTT
 961 AATAATGGTAATAGGAAAACAAAACCCAAAGCTTTTCAGAACTTCAGTGTGAGGTTTCCTATTTTGACAAGTTAACTTGT
1041 AAATACTCAGGTTTTACGATGTATAATTTACCTAATAGACCAAACTAACTCATGGAGATATTTTGAACTATTATTTAGGT
1121 ACAAACTTTATAAAGAATGTTAGTATGTCATAAAATATAACATTACAGCTTATTTAAAACCAAATATAGTTGAACATATT
1201 TAAAATACATTTTCACAGAATGGATGAATTAGTTGTTTCTTCAGAGTTACTTATGAACAGTTGAATGCTTTAAAATGTTC
1281 TGTCTGTAGGTAACATCTAAAACACAAGTGGGTTTATTTAAATTTTTAAAATTTGAAATTTTTTATTTGCAAAAAATTGT
1361 TTTATGCTTTATTATATCGCAAATGAGTGTCAGATTTTTGAGTACCAATGATCATGCTTCCATTTTTTTTAGTTTTAAAC
1441 CACCAAACCAATATTTTTCCTTTAAATTTTAATCTTATAATATAGAAATCTTATGTAAATGAAATTTTGTCATGTTTCAA
1521 ATAAAGAGAACTGAAGTAGAAAATAGAAATGCCAGTAAACAACATAATGTTTAATTTACAACTTACATTAGGGGTTTGGG
1601 GGAATGCTAATTATATATTGAGAATATACATTAGAACTCTTCAAAATGGGCTCTTCTAATGAGGTCACTACTGAACAAAA
1681 TTGTTCCCTCTTCTGTTAAATAGAATAGGTTTAAATGACTAGTCAAATGAATTATTTTCTTCTTGTTAAATAAATTAAAT
1761 CTTACTTTCTTTTAATGACCAACCTTAGGTAAAACAAAAATATTGTAATCCTAGAAATTATCCTCCAGCTTTCTCACCTG
1841 AAAATCTATTGAAGTGATCCCTGGTCATCCTAATAATGGGATGAGGGAAGTTTCCAGCAGATTTCAGGCTGTTCTTAAAG
1921 TTTTTGTTGGTCATTTTCTCAATAGTACATGAAATCAAGATGCTTATGAGCATGGAAATGTATTTAAAGTTTTTGCTTGT
2001 GTCCTCCTCAGTCAGAATAGAAAAGTAACTGAAATACTTTTACCTTTCTGTCCTTGATAAAATAGTAAAGAAAACCAAAC
2081 AAACCCAGGCCTGATGGGAAAAATGATTCCTTTATTCTAGCAACTTACTTTCTGTTGGTATGGGAAATGTTATTAATTTC
2161 TATTACTAAAGTTCATATCACAAAATGATATTTAATAATAACCTTGGGGTAAATCATGAATTTTTTTTCTACGTGTGAGT
2241 ATAAAAGACAAAAGTTGAACAGCATGGAATCTCATTGCCAAATTATTAGTGAATGTATAGTTCAGGTATTCTTTGAGACA
2321 CACAGTATCATTAATTTCTGAATTGTATTTCAGTGTTATTTTTTGTTTGTGACCACTAAGCTTCTGTCTTAATACAAAGC
2401 TGTTACCTTCTACAGAATTTAAGTCTGAAGATGTAAAGAGAGAACAGGCCTTGTGTAACAGAAGATACTCTTTTTTATGC
2481 TCCTTACTGTGATCACAGAAAAATTAAAAATCCAAGTGCTCTCTAGATTTGTTGATAAACATTTTATGCTTGCATTTAAA
2561 CTTGAAATGTATGAGCAGAATGAGACAATCAGTTAAATCAGAAATGAGAAGTATTATAATGTAAAGGCCTTGTTTTGCTG
2641 TAGCAATAAAATGACCAAGTGCAATGACTTGATTTAATAAAATCATATTTTAAAAGTTGCTGCTATGAATATTTTTGGCT
2721 ATAAAATTTTACCCTGACTTGCTTTCAATAACTGTTACGTAATGCAGTTGATGTTGTAACCTAACATTCCAAAAAAAAAA
2801 TTGAGAGGGGGAATCTCAAAATAGTATATACTTCACTAACTTGTTTACAGGTGCTGTATTTAAAAGCATGCTTCTCTCTC
2881 AAAAAGAAAAATTAAAGGATTTTATTGCCAGTCGTGTCAGTCTTTATTGGTTATTTTTTGTTAACTTTAGCATTTGTGTA
2961 TTTCAGAGTATGATGAAAATTATATTACTTCAATTTCCAAATACAAGAATAAATAGTAAACCAAAAACATTAAAAAAAAA
3041 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guAGU-CUUUCGCAAAUGUCa 5'
            |||  ||  :|||||||| 
Target 5' ctTCACTAACTTGTTTACAGg 3'
 2831 - 2851 154.00 -9.10
2 
miRNA  3' guagucUUUCGCAAAUGUCa 5'
                ||||| ||| ||| 
Target 5' aaacccAAAGC-TTTTCAGa 3'
 982 - 1000 125.00 -6.90
3 
miRNA  3' guaGUCUUU-CGCAAAUGUCa 5'
             ::|||| |: |||| || 
Target 5' gcaTGGAAATGTATTTAAAGt 3'
 1970 - 1990 125.00 -6.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
911607 2 ClinVar
357180 21 ClinVar
908652 161 ClinVar
908653 167 ClinVar
357181 187 ClinVar
908654 298 ClinVar
357182 320 ClinVar
908655 327 ClinVar
357183 366 ClinVar
357184 451 ClinVar
357185 451 ClinVar
357186 453 ClinVar
357187 453 ClinVar
357188 453 ClinVar
357189 453 ClinVar
357190 453 ClinVar
357191 453 ClinVar
357192 453 ClinVar
357193 491 ClinVar
357194 491 ClinVar
357195 493 ClinVar
357196 493 ClinVar
357197 493 ClinVar
357198 495 ClinVar
357199 495 ClinVar
357200 495 ClinVar
357201 495 ClinVar
357202 495 ClinVar
357203 497 ClinVar
357204 497 ClinVar
357205 497 ClinVar
357206 497 ClinVar
357207 497 ClinVar
357208 497 ClinVar
357209 499 ClinVar
357210 501 ClinVar
357211 503 ClinVar
909509 505 ClinVar
909510 550 ClinVar
357212 653 ClinVar
910447 707 ClinVar
357213 708 ClinVar
910448 763 ClinVar
357214 829 ClinVar
357215 867 ClinVar
910449 1018 ClinVar
357216 1209 ClinVar
357217 1423 ClinVar
357218 1464 ClinVar
357219 1607 ClinVar
911665 1919 ClinVar
357220 1928 ClinVar
357221 2038 ClinVar
357222 2040 ClinVar
357223 2115 ClinVar
911666 2118 ClinVar
357224 2119 ClinVar
357225 2221 ClinVar
357226 2233 ClinVar
357227 2242 ClinVar
908715 2310 ClinVar
908716 2322 ClinVar
357228 2340 ClinVar
357229 2356 ClinVar
357230 2370 ClinVar
908717 2395 ClinVar
357231 2446 ClinVar
357232 2450 ClinVar
909570 2471 ClinVar
909571 2549 ClinVar
357233 2706 ClinVar
357234 2760 ClinVar
COSN30188724 13 COSMIC
COSN5851883 27 COSMIC
COSN30103240 48 COSMIC
COSN30183887 49 COSMIC
COSN30167914 188 COSMIC
COSN23812203 265 COSMIC
COSN20102915 368 COSMIC
COSN28903718 453 COSMIC
COSN23987485 495 COSMIC
COSN27291122 496 COSMIC
COSN2163956 499 COSMIC
COSN19293232 513 COSMIC
COSN9908050 643 COSMIC
COSN17303314 666 COSMIC
COSN2163957 956 COSMIC
COSN22047879 1058 COSMIC
COSN6322250 1058 COSMIC
COSN29095427 1668 COSMIC
COSN17037506 1693 COSMIC
COSN23349296 1804 COSMIC
COSN24153784 2046 COSMIC
COSN20102920 2229 COSMIC
COSN30160997 2312 COSMIC
COSN31603072 2335 COSMIC
COSN31607208 2341 COSMIC
COSN28198173 2405 COSMIC
COSN30164264 2414 COSMIC
COSN30545225 2488 COSMIC
COSN24301756 2521 COSMIC
COSN30173992 2527 COSMIC
COSN31479791 2535 COSMIC
COSN31582882 2568 COSMIC
COSN31515901 2752 COSMIC
COSN31518357 2764 COSMIC
COSN9784954 2765 COSMIC
COSN9784955 2766 COSMIC
COSN16095949 2796 COSMIC
COSN28474147 2801 COSMIC
COSN30168988 2810 COSMIC
COSN31541668 2915 COSMIC
COSN28968716 2965 COSMIC
COSN27349339 2969 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1002943996 2 dbSNP
rs765703913 3 dbSNP
rs777487362 3 dbSNP
rs749000684 4 dbSNP
rs770785971 8 dbSNP
rs1488002644 11 dbSNP
rs745849008 14 dbSNP
rs1357620086 15 dbSNP
rs149303011 21 dbSNP
rs775602375 22 dbSNP
rs753087021 24 dbSNP
rs545552940 25 dbSNP
rs1278403784 26 dbSNP
rs758894683 26 dbSNP
rs1254137090 31 dbSNP
rs760818669 32 dbSNP
rs764151220 34 dbSNP
rs373000859 36 dbSNP
rs947414914 38 dbSNP
rs762034400 40 dbSNP
rs563716910 41 dbSNP
rs750927016 44 dbSNP
rs1423419789 45 dbSNP
rs377338831 48 dbSNP
rs767008547 49 dbSNP
rs575824882 52 dbSNP
rs919731476 53 dbSNP
rs953981613 57 dbSNP
rs903480232 62 dbSNP
rs1235303720 65 dbSNP
rs934828816 66 dbSNP
rs985303303 70 dbSNP
rs1450809233 71 dbSNP
rs1175119052 74 dbSNP
rs910550476 75 dbSNP
rs542743487 77 dbSNP
rs1188569655 80 dbSNP
rs1389506829 84 dbSNP
rs1051945393 91 dbSNP
rs890840137 96 dbSNP
rs944759694 99 dbSNP
rs1174145528 100 dbSNP
rs1171285664 103 dbSNP
rs1402634789 103 dbSNP
rs561008202 109 dbSNP
rs1018464747 121 dbSNP
rs1414174399 125 dbSNP
rs899483605 129 dbSNP
rs1237066244 144 dbSNP
rs1208461721 145 dbSNP
rs995203836 146 dbSNP
rs924743955 150 dbSNP
rs1274391172 153 dbSNP
rs1026899955 157 dbSNP
rs1316798171 159 dbSNP
rs112547257 161 dbSNP
rs1416037980 163 dbSNP
rs1379459742 165 dbSNP
rs567422637 167 dbSNP
rs1445619716 172 dbSNP
rs1356042037 176 dbSNP
rs546621872 181 dbSNP
rs982989762 182 dbSNP
rs868503079 183 dbSNP
rs1167213802 185 dbSNP
rs1424406657 186 dbSNP
rs9381582 187 dbSNP
rs1180317510 202 dbSNP
rs1236035219 215 dbSNP
rs747276163 220 dbSNP
rs1257026501 223 dbSNP
rs1481851131 226 dbSNP
rs1344739363 239 dbSNP
rs1198360603 241 dbSNP
rs1199035025 254 dbSNP
rs1456841281 258 dbSNP
rs1275532978 272 dbSNP
rs1276073623 284 dbSNP
rs1465943152 285 dbSNP
rs1321780442 286 dbSNP
rs960378590 286 dbSNP
rs532321007 290 dbSNP
rs1226229293 291 dbSNP
rs1311632888 291 dbSNP
rs1013178704 297 dbSNP
rs1044619698 298 dbSNP
rs1445700600 306 dbSNP
rs550885056 307 dbSNP
rs568934751 308 dbSNP
rs1002564845 311 dbSNP
rs532632702 320 dbSNP
rs924828714 325 dbSNP
rs961122271 330 dbSNP
rs934925471 351 dbSNP
rs1052338566 355 dbSNP
rs1200895630 356 dbSNP
rs995193210 358 dbSNP
rs1026778039 362 dbSNP
rs1255511932 365 dbSNP
rs1378073043 366 dbSNP
rs797004904 366 dbSNP
rs369859641 368 dbSNP
rs1488545766 371 dbSNP
rs1477575449 375 dbSNP
rs1170549452 377 dbSNP
rs1218683472 388 dbSNP
rs953846355 394 dbSNP
rs1309453680 395 dbSNP
rs985253977 408 dbSNP
rs1239246765 421 dbSNP
rs1374363062 424 dbSNP
rs1305595635 430 dbSNP
rs1039447359 437 dbSNP
rs1366769094 446 dbSNP
rs1291879974 450 dbSNP
rs200545880 450 dbSNP
rs1188961929 451 dbSNP
rs1199978537 451 dbSNP
rs1265818807 451 dbSNP
rs1397238383 451 dbSNP
rs1433140907 451 dbSNP
rs1491241781 451 dbSNP
rs886061523 451 dbSNP
rs886061524 451 dbSNP
rs899622873 452 dbSNP
rs1173152794 453 dbSNP
rs1173545026 453 dbSNP
rs1187447777 453 dbSNP
rs1192249857 453 dbSNP
rs1257763168 453 dbSNP
rs1263234410 453 dbSNP
rs1286354649 453 dbSNP
rs1376506043 453 dbSNP
rs1377453627 453 dbSNP
rs1478542172 453 dbSNP
rs1487115469 453 dbSNP
rs183129840 453 dbSNP
rs60486147 453 dbSNP
rs886061527 453 dbSNP
rs1200827474 455 dbSNP
rs1344027967 459 dbSNP
rs1254228358 461 dbSNP
rs1220359565 465 dbSNP
rs1457950485 465 dbSNP
rs1318461291 466 dbSNP
rs1277673783 471 dbSNP
rs1320025370 471 dbSNP
rs995131299 473 dbSNP
rs1335103747 475 dbSNP
rs1048099151 477 dbSNP
rs1389094285 477 dbSNP
rs1400482257 477 dbSNP
rs1169356493 479 dbSNP
rs1423470917 479 dbSNP
rs1466628039 479 dbSNP
rs1369905153 481 dbSNP
rs1476515771 481 dbSNP
rs886997009 481 dbSNP
rs1200253151 483 dbSNP
rs1253855616 483 dbSNP
rs1415988160 483 dbSNP
rs1441672661 483 dbSNP
rs1004152609 485 dbSNP
rs1196903723 485 dbSNP
rs1257273991 485 dbSNP
rs1285060744 485 dbSNP
rs1358549793 485 dbSNP
rs71775757 486 dbSNP
rs1311942740 487 dbSNP
rs1338880587 487 dbSNP
rs1447903575 487 dbSNP
rs1163293783 489 dbSNP
rs1329902852 489 dbSNP
rs1392221289 489 dbSNP
rs1400215951 489 dbSNP
rs1463659296 489 dbSNP
rs1180285170 491 dbSNP
rs1237558642 491 dbSNP
rs1366293826 491 dbSNP
rs1440076423 491 dbSNP
rs886061528 491 dbSNP
rs886061529 491 dbSNP
rs1209261812 493 dbSNP
rs1354520065 493 dbSNP
rs1453436221 493 dbSNP
rs773039196 493 dbSNP
rs777904165 493 dbSNP
rs866946718 493 dbSNP
rs878982156 493 dbSNP
rs886061530 493 dbSNP
rs886061531 493 dbSNP
rs886061526 494 dbSNP
rs1176497872 495 dbSNP
rs1198251304 495 dbSNP
rs1449932765 495 dbSNP
rs1478978819 495 dbSNP
rs748906344 495 dbSNP
rs757310792 495 dbSNP
rs757639761 495 dbSNP
rs867559785 495 dbSNP
rs886061532 495 dbSNP
rs886061533 495 dbSNP
rs886061525 496 dbSNP
rs886061534 496 dbSNP
rs886061535 496 dbSNP
rs886061536 496 dbSNP
rs9463343 497 dbSNP
rs36077218 499 dbSNP
rs1330962758 500 dbSNP
rs35361796 501 dbSNP
rs35274349 503 dbSNP
rs1330820990 504 dbSNP
rs879228960 505 dbSNP
rs1267001932 507 dbSNP
rs1484613290 508 dbSNP
rs1211036484 509 dbSNP
rs1268004403 510 dbSNP
rs1247791157 511 dbSNP
rs1400255377 511 dbSNP
rs71538327 511 dbSNP
rs1359443307 513 dbSNP
rs1450909618 516 dbSNP
rs1196546768 518 dbSNP
rs1156680811 523 dbSNP
rs1413867933 532 dbSNP
rs1165460977 533 dbSNP
rs1473081690 534 dbSNP
rs965656115 543 dbSNP
rs1409959251 551 dbSNP
rs976138904 559 dbSNP
rs776946466 563 dbSNP
rs934752817 570 dbSNP
rs990195916 571 dbSNP
rs1459515043 577 dbSNP
rs914753828 578 dbSNP
rs1294149170 580 dbSNP
rs1261220340 585 dbSNP
rs1390673693 596 dbSNP
rs567428935 598 dbSNP
rs534650938 599 dbSNP
rs569571081 602 dbSNP
rs1320566775 607 dbSNP
rs1228104276 628 dbSNP
rs959889525 629 dbSNP
rs1218655086 631 dbSNP
rs1013202485 632 dbSNP
rs1023005466 634 dbSNP
rs1044938531 635 dbSNP
rs907478366 637 dbSNP
rs1359503933 638 dbSNP
rs978703039 641 dbSNP
rs938901295 643 dbSNP
rs1314718918 646 dbSNP
rs1036717840 648 dbSNP
rs886061537 653 dbSNP
rs1477533379 659 dbSNP
rs987725521 665 dbSNP
rs896786859 666 dbSNP
rs1473351459 667 dbSNP
rs1237293922 677 dbSNP
rs578214494 686 dbSNP
rs995224310 686 dbSNP
rs1459493637 691 dbSNP
rs147421544 693 dbSNP
rs538944816 695 dbSNP
rs1220158373 698 dbSNP
rs1026724040 706 dbSNP
rs889531551 707 dbSNP
rs886061538 708 dbSNP
rs1293059144 709 dbSNP
rs1229646884 712 dbSNP
rs1379393306 715 dbSNP
rs931065142 734 dbSNP
rs1450104547 758 dbSNP
rs1006749024 763 dbSNP
rs1019853467 766 dbSNP
rs1425731971 773 dbSNP
rs1165622339 776 dbSNP
rs1465209897 785 dbSNP
rs965336351 791 dbSNP
rs1057042622 792 dbSNP
rs978393001 801 dbSNP
rs1413275705 805 dbSNP
rs1031681009 807 dbSNP
rs1182142525 821 dbSNP
rs187393492 829 dbSNP
rs990143912 830 dbSNP
rs1012714064 834 dbSNP
rs1371638585 835 dbSNP
rs914681960 836 dbSNP
rs769564467 839 dbSNP
rs948768728 849 dbSNP
rs1178547448 850 dbSNP
rs1022761951 859 dbSNP
rs980306590 860 dbSNP
rs575743490 864 dbSNP
rs928770232 865 dbSNP
rs886061539 867 dbSNP
rs769586575 870 dbSNP
rs1037655176 878 dbSNP
rs897404056 880 dbSNP
rs543255322 883 dbSNP
rs1243570307 888 dbSNP
rs1000216610 891 dbSNP
rs1306503713 896 dbSNP
rs1031743752 906 dbSNP
rs1445988995 907 dbSNP
rs554659661 908 dbSNP
rs987915517 911 dbSNP
rs1458419098 921 dbSNP
rs775356238 932 dbSNP
rs1161890442 934 dbSNP
rs1312900060 935 dbSNP
rs572996510 935 dbSNP
rs1339356095 936 dbSNP
rs1243064780 937 dbSNP
rs1276696401 940 dbSNP
rs1342738910 943 dbSNP
rs540202475 943 dbSNP
rs372353832 946 dbSNP
rs1204207530 954 dbSNP
rs1249382227 956 dbSNP
rs889561307 957 dbSNP
rs1007022643 962 dbSNP
rs1421959048 963 dbSNP
rs1484398182 964 dbSNP
rs1182651555 966 dbSNP
rs769211242 980 dbSNP
rs564712167 986 dbSNP
rs1270012282 988 dbSNP
rs1192492744 993 dbSNP
rs900964982 995 dbSNP
rs1181242953 1000 dbSNP
rs974877840 1008 dbSNP
rs532160892 1010 dbSNP
rs1286498671 1014 dbSNP
rs1239082345 1015 dbSNP
rs192279940 1018 dbSNP
rs774792083 1019 dbSNP
rs1303317278 1030 dbSNP
rs562840607 1031 dbSNP
rs868464868 1032 dbSNP
rs1387486815 1036 dbSNP
rs1366972806 1052 dbSNP
rs569900276 1058 dbSNP
rs1402116935 1059 dbSNP
rs1429644968 1061 dbSNP
rs1452075327 1066 dbSNP
rs763639814 1081 dbSNP
rs1177393789 1082 dbSNP
rs1361258865 1083 dbSNP
rs529796012 1084 dbSNP
rs1196583831 1086 dbSNP
rs939702161 1092 dbSNP
rs1303083529 1099 dbSNP
rs1011610961 1105 dbSNP
rs1484765217 1109 dbSNP
rs1257742321 1111 dbSNP
rs1233845381 1125 dbSNP
rs1322682636 1131 dbSNP
rs1281481937 1142 dbSNP
rs1021604438 1148 dbSNP
rs1377910202 1158 dbSNP
rs1449873093 1159 dbSNP
rs970182968 1174 dbSNP
rs1220485388 1176 dbSNP
rs1057206005 1182 dbSNP
rs1297805336 1185 dbSNP
rs980554986 1187 dbSNP
rs1380932003 1207 dbSNP
rs28403574 1209 dbSNP
rs960518566 1217 dbSNP
rs972871219 1219 dbSNP
rs918864419 1222 dbSNP
rs1465997348 1227 dbSNP
rs1404464480 1228 dbSNP
rs931553490 1242 dbSNP
rs1478516499 1244 dbSNP
rs759886651 1255 dbSNP
rs181927058 1260 dbSNP
rs1313751551 1270 dbSNP
rs1210479513 1285 dbSNP
rs1192001194 1297 dbSNP
rs1426564070 1303 dbSNP
rs1258049687 1306 dbSNP
rs528576485 1310 dbSNP
rs1290566514 1312 dbSNP
rs910864372 1314 dbSNP
rs866107651 1328 dbSNP
rs942470528 1329 dbSNP
rs1041160384 1333 dbSNP
rs1255659198 1337 dbSNP
rs1261105417 1339 dbSNP
rs900913933 1349 dbSNP
rs1200665712 1351 dbSNP
rs1210719955 1359 dbSNP
rs1269870848 1360 dbSNP
rs1225556442 1361 dbSNP
rs999806944 1364 dbSNP
rs1248686965 1367 dbSNP
rs1313893987 1369 dbSNP
rs1449465140 1370 dbSNP
rs751035930 1372 dbSNP
rs1427803551 1373 dbSNP
rs1333943530 1375 dbSNP
rs1466779940 1376 dbSNP
rs547101200 1379 dbSNP
rs904349919 1380 dbSNP
rs1460174515 1381 dbSNP
rs1369779889 1385 dbSNP
rs1443767769 1397 dbSNP
rs1241253541 1406 dbSNP
rs1175751189 1409 dbSNP
rs1458126295 1413 dbSNP
rs1000017010 1416 dbSNP
rs145649247 1423 dbSNP
rs185354826 1423 dbSNP
rs886061540 1423 dbSNP
rs1010803091 1424 dbSNP
rs1245779473 1428 dbSNP
rs1467882820 1431 dbSNP
rs1322019252 1436 dbSNP
rs1388710449 1439 dbSNP
rs1312151396 1445 dbSNP
rs1448212356 1454 dbSNP
rs886061541 1464 dbSNP
rs539067013 1469 dbSNP
rs1008865066 1476 dbSNP
rs1327621502 1477 dbSNP
rs557333673 1484 dbSNP
rs964968686 1491 dbSNP
rs7762737 1495 dbSNP
rs1027938337 1523 dbSNP
rs952183225 1526 dbSNP
rs1160179660 1532 dbSNP
rs1440250637 1545 dbSNP
rs1300303154 1546 dbSNP
rs878965199 1550 dbSNP
rs1179825863 1552 dbSNP
rs1001535764 1553 dbSNP
rs145311126 1554 dbSNP
rs908249170 1575 dbSNP
rs1230456723 1583 dbSNP
rs1268914787 1587 dbSNP
rs1036223132 1588 dbSNP
rs34036075 1588 dbSNP
rs1357504557 1589 dbSNP
rs557767612 1595 dbSNP
rs1241257989 1596 dbSNP
rs529185529 1598 dbSNP
rs1278290501 1601 dbSNP
rs916881800 1603 dbSNP
rs886061542 1607 dbSNP
rs948416425 1613 dbSNP
rs1303187050 1618 dbSNP
rs1403975548 1624 dbSNP
rs1044281628 1625 dbSNP
rs904485945 1629 dbSNP
rs1401065905 1638 dbSNP
rs972905438 1651 dbSNP
rs1053369499 1655 dbSNP
rs891848777 1657 dbSNP
rs1378315258 1662 dbSNP
rs1198728854 1664 dbSNP
rs918726606 1670 dbSNP
rs952984634 1673 dbSNP
rs1217894589 1690 dbSNP
rs1446774737 1694 dbSNP
rs1008064242 1702 dbSNP
rs147875817 1704 dbSNP
rs7763060 1707 dbSNP
rs1346266169 1709 dbSNP
rs1283382018 1710 dbSNP
rs775910345 1717 dbSNP
rs1222302039 1719 dbSNP
rs910899701 1724 dbSNP
rs1315544305 1725 dbSNP
rs760777753 1737 dbSNP
rs1437064471 1746 dbSNP
rs1027908950 1761 dbSNP
rs142849910 1765 dbSNP
rs1175806163 1786 dbSNP
rs558664143 1787 dbSNP
rs922371991 1790 dbSNP
rs1194617596 1806 dbSNP
rs1328705625 1814 dbSNP
rs1240741176 1820 dbSNP
rs764118747 1828 dbSNP
rs935064561 1829 dbSNP
rs1222163212 1834 dbSNP
rs1015522055 1838 dbSNP
rs1052284513 1841 dbSNP
rs1202547367 1843 dbSNP
rs893602464 1849 dbSNP
rs1259639128 1857 dbSNP
rs1221472165 1860 dbSNP
rs917036717 1861 dbSNP
rs767173291 1862 dbSNP
rs1360785749 1864 dbSNP
rs1268217892 1867 dbSNP
rs946623329 1870 dbSNP
rs750028095 1873 dbSNP
rs1449874315 1880 dbSNP
rs948385426 1887 dbSNP
rs1335990007 1891 dbSNP
rs979740080 1896 dbSNP
rs1484243604 1899 dbSNP
rs755367650 1905 dbSNP
rs1045037890 1906 dbSNP
rs905105823 1909 dbSNP
rs1409623203 1918 dbSNP
rs576753032 1919 dbSNP
rs1252114526 1921 dbSNP
rs1469286080 1927 dbSNP
rs886061543 1928 dbSNP
rs1156342196 1931 dbSNP
rs1182255472 1932 dbSNP
rs1035683641 1943 dbSNP
rs1052932528 1944 dbSNP
rs1204542116 1947 dbSNP
rs1306567130 1948 dbSNP
rs779327097 1950 dbSNP
rs895903361 1964 dbSNP
rs1359860533 1965 dbSNP
rs994188383 1969 dbSNP
rs544203839 1973 dbSNP
rs1314057890 1978 dbSNP
rs1450381969 1981 dbSNP
rs1405937921 1982 dbSNP
rs1378946208 1983 dbSNP
rs944586159 1985 dbSNP
rs1162869567 1987 dbSNP
rs1025771864 1990 dbSNP
rs952850876 1991 dbSNP
rs1363571269 1997 dbSNP
rs1353031561 2000 dbSNP
rs367908314 2004 dbSNP
rs529956218 2007 dbSNP
rs541588426 2008 dbSNP
rs1162006713 2009 dbSNP
rs1251792858 2014 dbSNP
rs1442104512 2014 dbSNP
rs1440254916 2015 dbSNP
rs1286098954 2019 dbSNP
rs996142667 2025 dbSNP
rs182750027 2031 dbSNP
rs1230872916 2035 dbSNP
rs886061544 2038 dbSNP
rs1043276 2040 dbSNP
rs1290773789 2043 dbSNP
rs1344873851 2053 dbSNP
rs1206373229 2057 dbSNP
rs1223335934 2060 dbSNP
rs1307598129 2060 dbSNP
rs1005565925 2065 dbSNP
rs935068799 2082 dbSNP
rs987852837 2085 dbSNP
rs1405808839 2090 dbSNP
rs1365134952 2091 dbSNP
rs2152795 2092 dbSNP
rs1015202870 2093 dbSNP
rs1436929172 2111 dbSNP
rs886061545 2115 dbSNP
rs1364938422 2118 dbSNP
rs886061546 2119 dbSNP
rs1158993632 2123 dbSNP
rs914985726 2129 dbSNP
rs1238792059 2138 dbSNP
rs946570959 2139 dbSNP
rs1044885481 2141 dbSNP
rs1182403313 2142 dbSNP
rs905136729 2163 dbSNP
rs1013791072 2166 dbSNP
rs1220045752 2169 dbSNP
rs1486709078 2176 dbSNP
rs1024432739 2177 dbSNP
rs1261279797 2178 dbSNP
rs1215017840 2187 dbSNP
rs774186224 2193 dbSNP
rs1303521123 2196 dbSNP
rs939255671 2204 dbSNP
rs1169031552 2206 dbSNP
rs1395502499 2214 dbSNP
rs1408490122 2220 dbSNP
rs138722443 2221 dbSNP
rs540299946 2221 dbSNP
rs868517011 2221 dbSNP
rs546771382 2225 dbSNP
rs886061547 2229 dbSNP
rs200997555 2230 dbSNP
rs532358424 2232 dbSNP
rs886061548 2233 dbSNP
rs994222556 2234 dbSNP
rs1428221664 2237 dbSNP
rs1196793348 2240 dbSNP
rs1429882073 2241 dbSNP
rs151064033 2242 dbSNP
rs1484857872 2255 dbSNP
rs944535857 2255 dbSNP
rs888529667 2256 dbSNP
rs1040211495 2259 dbSNP
rs921979744 2265 dbSNP
rs932069237 2269 dbSNP
rs1297398116 2272 dbSNP
rs1005700429 2273 dbSNP
rs1229928321 2276 dbSNP
rs778386276 2277 dbSNP
rs1049069415 2283 dbSNP
rs964661471 2285 dbSNP
rs1382037607 2290 dbSNP
rs36041587 2292 dbSNP
rs976989679 2295 dbSNP
rs747110506 2310 dbSNP
rs1469901938 2320 dbSNP
rs956393348 2322 dbSNP
rs1404756996 2325 dbSNP
rs1173565304 2326 dbSNP
rs760611351 2327 dbSNP
rs987803666 2336 dbSNP
rs2152796 2340 dbSNP
rs946435170 2341 dbSNP
rs1184098526 2347 dbSNP
rs1460786733 2351 dbSNP
rs1240692548 2352 dbSNP
rs1197559189 2354 dbSNP
rs141029774 2356 dbSNP
rs1189124915 2361 dbSNP
rs926456014 2369 dbSNP
rs886061549 2370 dbSNP
rs939268448 2371 dbSNP
rs555330831 2373 dbSNP
rs1361994215 2374 dbSNP
rs1056349385 2376 dbSNP
rs1316116445 2378 dbSNP
rs567065074 2388 dbSNP
rs1014136188 2395 dbSNP
rs919170251 2396 dbSNP
rs1474321047 2400 dbSNP
rs930019915 2405 dbSNP
rs1396846808 2414 dbSNP
rs1166937251 2424 dbSNP
rs1174062915 2426 dbSNP
rs969755086 2427 dbSNP
rs1386895556 2429 dbSNP
rs1047033972 2432 dbSNP
rs1469452694 2440 dbSNP
rs886061550 2446 dbSNP
rs1005567689 2447 dbSNP
rs878891637 2450 dbSNP
rs1443936271 2452 dbSNP
rs1383298324 2454 dbSNP
rs1184146700 2455 dbSNP
rs1438444705 2466 dbSNP
rs899962054 2468 dbSNP
rs746098698 2469 dbSNP
rs1292973798 2471 dbSNP
rs376709257 2471 dbSNP
rs537529054 2471 dbSNP
rs11549492 2478 dbSNP
rs1245619138 2482 dbSNP
rs1358011783 2485 dbSNP
rs998751438 2486 dbSNP
rs1334869223 2488 dbSNP
rs1281772992 2489 dbSNP
rs1240626829 2493 dbSNP
rs1335802721 2494 dbSNP
rs1327557089 2497 dbSNP
rs957028927 2513 dbSNP
rs1029952914 2516 dbSNP
rs1020581983 2524 dbSNP
rs1303605606 2526 dbSNP
rs1423750831 2536 dbSNP
rs965998446 2538 dbSNP
rs1160194923 2541 dbSNP
rs748856071 2549 dbSNP
rs1435828281 2558 dbSNP
rs534444098 2569 dbSNP
rs1481542919 2570 dbSNP
rs1269867262 2586 dbSNP
rs1222291837 2592 dbSNP
rs1489956729 2595 dbSNP
rs1325161166 2601 dbSNP
rs921782425 2606 dbSNP
rs1275793040 2607 dbSNP
rs1278460910 2609 dbSNP
rs769534524 2612 dbSNP
rs1009264147 2621 dbSNP
rs1283498922 2630 dbSNP
rs1404150990 2637 dbSNP
rs1347929744 2638 dbSNP
rs1222519207 2654 dbSNP
rs1319980808 2660 dbSNP
rs1260771620 2665 dbSNP
rs1384068138 2669 dbSNP
rs909333915 2686 dbSNP
rs775329134 2706 dbSNP
rs1430309472 2722 dbSNP
rs967809168 2726 dbSNP
rs1198936064 2734 dbSNP
rs1036370876 2741 dbSNP
rs980508730 2749 dbSNP
rs1194273942 2753 dbSNP
rs535385500 2757 dbSNP
rs926457202 2759 dbSNP
rs719856 2760 dbSNP
rs149829490 2765 dbSNP
rs1263175470 2767 dbSNP
rs1222544426 2778 dbSNP
rs905356522 2781 dbSNP
rs537412633 2785 dbSNP
rs1431191117 2790 dbSNP
rs1001023163 2791 dbSNP
rs1325847274 2791 dbSNP
rs536489207 2791 dbSNP
rs1406964633 2792 dbSNP
rs1174558380 2806 dbSNP
rs539201209 2831 dbSNP
rs892889160 2844 dbSNP
rs1316738559 2845 dbSNP
rs1158020244 2849 dbSNP
rs1010283716 2850 dbSNP
rs1475277228 2857 dbSNP
rs1019963927 2858 dbSNP
rs1383502012 2864 dbSNP
rs1185996664 2866 dbSNP
rs1462118149 2868 dbSNP
rs1202411490 2869 dbSNP
rs1310140611 2877 dbSNP
rs1389003657 2881 dbSNP
rs1274662752 2885 dbSNP
rs1214995642 2889 dbSNP
rs1338471047 2890 dbSNP
rs1295077905 2891 dbSNP
rs1454538385 2898 dbSNP
rs187078035 2906 dbSNP
rs576692064 2914 dbSNP
rs146858632 2915 dbSNP
rs909846524 2925 dbSNP
rs774222398 2933 dbSNP
rs778525256 2935 dbSNP
rs1329751199 2940 dbSNP
rs1409560458 2952 dbSNP
rs867025019 2953 dbSNP
rs1239195325 2969 dbSNP
rs574127575 2993 dbSNP
rs998387632 2994 dbSNP
rs1385151892 3002 dbSNP
rs1211548893 3005 dbSNP
rs541720278 3008 dbSNP
rs1490125586 3011 dbSNP
rs940798308 3016 dbSNP
rs972450394 3021 dbSNP
rs1204815828 3026 dbSNP
rs917905351 3028 dbSNP
rs1051250665 3030 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 23607.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guAGU-CUUUCGCAAAUGUCa 5'
            |||  ||  :|||||||| 
Target 5' cuUCACUAACUUGUUUACAG- 3'
 		7 - 26
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000359314.5 | 3UTR | UAUAUACUUCACUAACUUGUUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000359314.5 | 3UTR | UAUAUACUUCACUAACUUGUUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.679 0 0.594 0 30 Click to see details
LIHC -0.269 0.03 -0.228 0.06 49 Click to see details
BLCA 0.444 0.04 0.275 0.14 17 Click to see details
BRCA 0.166 0.07 0.250 0.01 84 Click to see details
KICH 0.273 0.09 0.266 0.1 25 Click to see details
LUAD 0.383 0.11 0.406 0.1 12 Click to see details
CESC 0.899 0.14 1.000 0.5 3 Click to see details
PCPG 0.875 0.16 1.000 0.5 3 Click to see details
PRAD 0.131 0.18 0.147 0.15 50 Click to see details
ESCA 0.263 0.22 0.045 0.45 11 Click to see details
UCEC 0.157 0.26 0.068 0.39 19 Click to see details
PAAD -0.479 0.26 -0.600 0.2 4 Click to see details
LUSC 0.104 0.27 0.101 0.27 38 Click to see details
KIRC -0.075 0.27 -0.040 0.37 68 Click to see details
KIRP -0.066 0.36 0.104 0.29 32 Click to see details
THCA 0.03 0.41 0.006 0.48 59 Click to see details
HNSC -0.03 0.43 -0.029 0.43 41 Click to see details
CHOL -0.053 0.45 0.233 0.27 9 Click to see details
CHOL -0.053 0.45 0.233 0.27 9 Click to see details
93 hsa-miR-3607-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057680 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT058092 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 2 4
MIRT063624 FBXO28 F-box protein 28 2 2
MIRT071884 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT079440 FOXK2 forkhead box K2 2 4
MIRT080491 BCL10 B-cell CLL/lymphoma 10 2 2
MIRT081214 MIDN midnolin 2 10
MIRT082786 ZNF264 zinc finger protein 264 2 2
MIRT082862 ZNF543 zinc finger protein 543 2 4
MIRT099112 FOXC1 forkhead box C1 2 4
MIRT099343 QKI QKI, KH domain containing RNA binding 2 2
MIRT100913 CD2AP CD2 associated protein 2 2
MIRT104030 USP42 ubiquitin specific peptidase 42 2 6
MIRT130023 QSER1 glutamine and serine rich 1 2 2
MIRT142614 IL21R interleukin 21 receptor 2 2
MIRT143477 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT187759 ESYT1 extended synaptotagmin 1 2 2
MIRT200250 EVI5 ecotropic viral integration site 5 2 2
MIRT212867 N4BP2 NEDD4 binding protein 2 2 2
MIRT219622 GIGYF1 GRB10 interacting GYF protein 1 2 8
MIRT220244 FAM3C family with sequence similarity 3 member C 2 6
MIRT222069 PURB purine rich element binding protein B 2 2
MIRT243478 TRIM71 tripartite motif containing 71 2 2
MIRT261690 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT320184 ITGB8 integrin subunit beta 8 2 2
MIRT441644 CCNB1IP1 cyclin B1 interacting protein 1 2 6
MIRT441965 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT442175 TRIM59 tripartite motif containing 59 2 4
MIRT442716 TNKS tankyrase 2 2
MIRT443932 ZNF418 zinc finger protein 418 2 2
MIRT445790 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT448148 P2RY10 purinergic receptor P2Y10 2 2
MIRT463393 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT463761 YPEL2 yippee like 2 2 2
MIRT477233 ETF1 eukaryotic translation termination factor 1 2 2
MIRT483464 DR1 down-regulator of transcription 1 2 6
MIRT484110 ABCD2 ATP binding cassette subfamily D member 2 2 4
MIRT487297 SLC38A9 solute carrier family 38 member 9 2 2
MIRT501292 RRN3 RRN3 homolog, RNA polymerase I transcription factor 2 4
MIRT501343 RNF44 ring finger protein 44 2 4
MIRT502696 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT511075 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511243 KLHL36 kelch like family member 36 2 6
MIRT531418 PLBD2 phospholipase B domain containing 2 2 2
MIRT536603 IRF2 interferon regulatory factor 2 2 2
MIRT537727 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT537985 DPP8 dipeptidyl peptidase 8 2 2
MIRT539083 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 4
MIRT547185 PBRM1 polybromo 1 2 2
MIRT547596 LIN28B lin-28 homolog B 2 2
MIRT548188 FOXA1 forkhead box A1 2 2
MIRT555055 PYURF PIGY upstream reading frame 2 2
MIRT557321 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT557979 FAM217B family with sequence similarity 217 member B 2 4
MIRT558439 DDIT4 DNA damage inducible transcript 4 2 3
MIRT558560 CRLF3 cytokine receptor like factor 3 2 4
MIRT562332 FGF2 fibroblast growth factor 2 2 2
MIRT565836 SCML2 Scm polycomb group protein like 2 2 2
MIRT566796 MIER3 MIER family member 3 2 2
MIRT568565 AK4 adenylate kinase 4 2 2
MIRT572483 PRR14L proline rich 14 like 2 2
MIRT572586 HGFAC HGF activator 2 2
MIRT572876 OPHN1 oligophrenin 1 2 2
MIRT573136 ABT1 activator of basal transcription 1 2 2
MIRT573244 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT573388 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT574588 N4BP1 NEDD4 binding protein 1 2 2
MIRT575081 Ddit4 DNA-damage-inducible transcript 4 2 3
MIRT609077 SMIM15 small integral membrane protein 15 2 8
MIRT619337 RNF2 ring finger protein 2 2 2
MIRT623058 NRXN1 neurexin 1 2 2
MIRT623307 MARCH4 membrane associated ring-CH-type finger 4 2 2
MIRT623899 FOXN3 forkhead box N3 2 2
MIRT625177 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT630448 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT630587 SLC9A8 solute carrier family 9 member A8 2 2
MIRT634451 PAK6 p21 (RAC1) activated kinase 6 2 2
MIRT634727 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT635769 PDCL3 phosducin like 3 2 2
MIRT650924 ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 2 2
MIRT668975 CLSTN2 calsyntenin 2 2 2
MIRT669612 AEBP2 AE binding protein 2 2 2
MIRT686746 STX16 syntaxin 16 2 2
MIRT687932 HMGN1 high mobility group nucleosome binding domain 1 2 2
MIRT691875 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT698432 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT698572 TFDP2 transcription factor Dp-2 2 2
MIRT704500 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 2
MIRT704907 CCDC71L coiled-coil domain containing 71 like 2 2
MIRT713810 XRCC2 X-ray repair cross complementing 2 2 2
MIRT718300 MOGAT1 monoacylglycerol O-acyltransferase 1 2 2
MIRT719022 SHROOM3 shroom family member 3 2 2
MIRT723766 MPLKIP M-phase specific PLK1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3607 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-3607 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3607 Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-mir-3607 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-3607 Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-mir-3607 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3607-3p Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3607-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia tissue
hsa-miR-3607-3p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-3607-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-3607-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-3607-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3607-3p Platinum 23939 resistant tissue
hsa-miR-3607-3p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3607-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3607-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Bortezomib 387447 NSC681239 approved sensitive tissue (multiple myeloma)
hsa-miR-3607-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-3607-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR1)
hsa-miR-3607-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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