miRTarBase - #MIRT101977


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pre-miRNA Information
pre-miRNA hsa-mir-548c   
Genomic Coordinates chr12: 64622509 - 64622605
Description Homo sapiens miR-548c stem-loop
Comment Extensive cloning studies suggest that the 5' miRNA may be the predominant one .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-548c-3p
Sequence 61| CAAAAAUCUCAAUUACUUUUGC |82
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23013696 22 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1396767933 3 dbSNP
rs1314622460 7 dbSNP
rs1226739912 9 dbSNP
rs780547012 11 dbSNP
rs747421587 12 dbSNP
rs1298302643 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol EPHA7   
Synonyms EHK-3, EHK3, EK11, HEK11
Description EPH receptor A7
Transcript NM_004440   
Expression
Putative miRNA Targets on EPHA7
3'UTR of EPHA7
(miRNA target sites are highlighted)		 
>EPHA7|NM_004440|3'UTR
   1 TATGCATTTCTCCCTTTTAAGGGAGATTACAGACTGCAAGAGAACAGTACTGGCCTTCAGTATATGCATAGAATGCTGCT
  81 AGAAGACAAGTGATGTCCTGGGTCCTTCCAACAGTGAAGAGAAGATTTAAGAAGCACCTATAGACTTGAACTCCTAAGTG
 161 CCACCAGAATATATAAAAAGGGAATTTAGGATCCACCATCGGTGGCCAGGAAAATAGCAGTGACAATAAACAAAGTACTA
 241 CCTGAAAAACATCCAAACACCTTGAGCTCTCTAACCTCCTTTTTGTCTTATAGACTTTTTAAAATGTACATAAAGAATTT
 321 AAGAAAGAATATATTTGTCAAATAAAATCATGATCTTATTGTTAAAATTAATGAAATATTTTCCTTAAATATGTGATTTC
 401 AGACTATTCCTTTTTAAAATCATTTGTGTTTATTCTTCATAAGGACTTTGTTTTAGAAAGCTGTTTATAGCTTTGGACCT
 481 TTTTAGTGTTAAATCTGTAACATTACTACACTGGGTACCTTTGAAAGAATCTCAAATTTCAAAAGAAATAGCATGATTGA
 561 AGATACATCTCTGTTAGAACATTGGTATCCTTTTTGTGCCATTTTATTCTGTTTAATCAGTGCTGTTTTGATATTGTTTG
 641 CTAATTGGCAGGTAGTCAAGAAAATGCAAGTTGCCAAGAGCTCTGATATTTTTTAAAAAGAATTTTTTTGTAAAGATCAG
 721 ACAACACACTATCTTTTCAATGAAAAAAGCAATAATGATCCATACATACTATAAGGCACTTTTAACAGATTGTTTATAGA
 801 GTGATTTTACTAGAAAGAATTTAATAAACTCGAAGTTTAGGTTTATGAGTATATAAACAAATGAGGCACTTCATCTGAAG
 881 AATGTTGGTGAAGGCAAGTCTCTGAAAGCAGAACTATCCAGTGTTATCTAAAAATTAATCTGAGCACATCAAGATTTTTT
 961 CATTCTCGTGACATTAGGAAATTTAGGATAAATAGTTGACATATATTTTATATCCTCTTCTGTTGAATGCAGTCCAAACA
1041 TGAAAGGAAATAATTGTTTTATATTATAACTCTGAAGCATGATAAAGGGGCAGTTCACAATTTTCACCATTTAAACACAA
1121 ATTTGCTGCACAGAATATCACCATTGCAGTTCAAAACAAAACAAAACAAAAAGTCTTTTGTTTGTGAACACTGATGCAAG
1201 AAACTTGTTAAATGAAAGGACTCTTTACCCTAGAAGGAAGAGGTGAAGGATCTGGCTTGTTTTTAAAGCTTTATTTATTA
1281 AACCATATTATTTGATTACTGTGTTAGAATTTCATAAGCAATAATTAAATGTGTCTTTATAGATATTGCAGGAATGTATA
1361 CATATTGTGATTAATGCTTTCAAAACTTATGAAAATCATGAACTACCCCAGAATTGAACTGTTGTACTTCCAAAGAGAAT
1441 TGGGCTGTTTATAATGATTTTAATAGAGAAAGATCCCAGGGATCGGTCATAATTGGTCTTGTTTGATAATGTGGGCATCC
1521 ACAAACAAACAAACAAATAACAGAAACAAAATCTGTAAATGTTCCTTTGTAAAACTTGTAAATTTTATTTATACTGTCTT
1601 GTTTTGTACACACATTTCTCTGTAGTGGGCTCTGAATACATTGAAAATGCACTATATTTTTCTATTTTACTTGCAGAGCA
1681 TCACAAAAGAACAGGTATTTTCAGTGCTACATAATGTGTTTTCCCACATTTAGGACCAAAGACGGCTATAGAAAAACTCA
1761 AATGGATTGCTTCCCAAACCCCTCCCCACCCTTTTTTTTTGGTTTTAAATCACTGTACAGTGTTATTTGATATTTTAATT
1841 TATTTTTTGATTGACTAGAAAAATCATTTTAATTTCACTAAAATGTTTTTTGTCCCTAAGGAAAAGTAATCTGTAAAAAT
1921 AATTTTAATTAGCATAATACAGTCACCTAGACACTTCCATTTGTAATCTTTGTAATAGACTGTAAATATATTTTTGGAAC
2001 TATAACACAATGTGCTTGAGGGTTATTTTTCAGTGTCTGCAGTGTGTACAAGTGTTTATACTAAGTCCAGCACTTTACAA
2081 TTCTAATCAGTAGCATTGGCCTTTGTGAGAATGAGTGAAAGAGTTTGAGTGAGTGTTCTTAATTCCTTTTGGATTCTAGA
2161 CTCACTAATAATGAAGTTCTTTTCTTGTTCATAGCTTAAGGTGCTTATTTTTTCTATTAAAATTAAATTAACAAAAGCCA
2241 TTCTAGAAATAGAAGACATAGTATGGTACATGCAAACGGTGTCTTTCCTGCTTTTTTCTAGCACTAGATTTATAGTTGAG
2321 TAGTCTTTCTTGAGTAGAAGGGCAGAATAAAAGTTTTTTTGAGTTTTTTTCAAAAATAAATTTTTCCTTCAGCAATATAC
2401 CTCATCTGCCTTAAATTTTTTACAGCTCTTTACAGGGAAAGGGGAGAAGGGATGGGAAAGACACACAGCACAATAGGAAG
2481 TGTATGATTACATCACTATCTCGTTTGTAAGTTTCTTTTCCTAATCAACATTATGATTTCGAAATACATGTATGTGAAAC
2561 AAATATTAAGAGAAAAAGAATTAACATTGTAATGCTGATTGTAATACTCTCTTCCAGAAAGAGATGAGATGGTATAACGA
2641 TAAGAATGTACAACTTGCACCTTGAAATCTTTTTTTTTAAATAAATTAGTGCTCAGGGGAGGAAAAGTAGAGAAAGTGAA
2721 CGTCAAAAATAGAATTCCAAAATTATAAAAATGCAAAAGGAAATGGCCTCCTTGCTTTAATAGAGCCACCTTTTTTAGAA
2801 CACTGTCCTCACACTTGACCTGTGTTTTGCATTCAGTACTGAAATAAAAGTAACTTGTTCTACATTTGAATCTAACATTT
2881 TCTCAGCAATTGATCTGGTCCTTGTTTACTAGAACTGGTGGTTTATGCTTGTCAGAGCACTATTAGTTGAATCATATTGT
2961 ATACTTATGTAATCTACATTAGCTAGTACTGTTTAGGACTATATTTTAATTGCTCTTCTTATCCGTGTTTTTAAGACAAT
3041 TAAAATGGTGTGATTCACCTCTCTTTTTTATTTAGGTAATGCTGATATTCTCCCTTTTGTTTCTTGAGTAGCCTAGAACT
3121 ATGCTACTCACTGATGTGCATGTTCAAATAAATTACTGATGTGTATTTTTTTGCTATATGTGGAGAAATCATGGGGAACT
3201 CGGGGCGAGATGTGCTTTTCGTTGGTTGAATTTGTCCCTCCTTGCCTAAGAAATACTACAGGGGTCATCCTTTTATAAGG
3281 ACAAACTGCTTTTGAACAGTGTCTTCAATGTATCAAGCACAAATAACTCTTTCTTCAACATGAATCATAAGTCTCTTTTT
3361 ACCAGCTTAAAATAATAAACAAGTCTATTAGACAATGTAAAGAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUUUUC--AUUAACUCUAAAAAc 5'
            |||||  |  ||||| ||||| 
Target 5' atAAAAGTTTTTTTGAGTTTTTTt 3'
 2347 - 2370 142.00 -11.20
2 
miRNA  3' cguuUUCAUUA-ACUCUAAAAAc 5'
              ||| : | ||| |||||| 
Target 5' tgccAAGAGCTCTGATATTTTTt 3'
 672 - 694 130.00 -6.40
3 
miRNA  3' cgUUUUCAUUAACU------------CUAAAAac 5'
            ||:|| |||||:            ||||||  
Target 5' caAAGAG-AATTGGGCTGTTTATAATGATTTTaa 3'
 1431 - 1463 129.00 -7.01
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30463813 12 COSMIC
COSN30466612 14 COSMIC
COSN30482957 17 COSMIC
COSN30449671 22 COSMIC
COSN30449692 23 COSMIC
COSN30468469 25 COSMIC
COSN28875038 34 COSMIC
COSN31508250 49 COSMIC
COSN24310603 52 COSMIC
COSN20075541 53 COSMIC
COSN30135079 53 COSMIC
COSN30105673 62 COSMIC
COSN30531364 81 COSMIC
COSN31526724 86 COSMIC
COSN8782917 89 COSMIC
COSN28201320 116 COSMIC
COSN24384731 157 COSMIC
COSN30542337 157 COSMIC
COSN30542916 190 COSMIC
COSN31575402 193 COSMIC
COSN23811227 197 COSMIC
COSN31489956 200 COSMIC
COSN27609893 219 COSMIC
COSN25933112 258 COSMIC
COSN30539877 327 COSMIC
COSN31534532 400 COSMIC
COSN26599969 401 COSMIC
COSN31483251 410 COSMIC
COSN31486207 421 COSMIC
COSN31582764 448 COSMIC
COSN19661707 449 COSMIC
COSN32056314 461 COSMIC
COSN31547476 545 COSMIC
COSN21011690 548 COSMIC
COSN7914255 694 COSMIC
COSN31483737 702 COSMIC
COSN6338193 722 COSMIC
COSN16544460 822 COSMIC
COSN17696969 897 COSMIC
COSN31577788 919 COSMIC
COSN23175660 934 COSMIC
COSN31489840 950 COSMIC
COSN30161096 961 COSMIC
COSN7914254 999 COSMIC
COSN26279773 1059 COSMIC
COSN25952207 1074 COSMIC
COSN31535833 1076 COSMIC
COSN14466391 1082 COSMIC
COSN9916418 1093 COSMIC
COSN26636133 1126 COSMIC
COSN31582999 1175 COSMIC
COSN31488447 1186 COSMIC
COSN30176812 1216 COSMIC
COSN32056593 1299 COSMIC
COSN30542750 1415 COSMIC
COSN28773659 1598 COSMIC
COSN20103120 1791 COSMIC
COSN23166753 1792 COSMIC
COSN30544559 1796 COSMIC
COSN15975685 1801 COSMIC
COSN17877379 1839 COSMIC
COSN31529808 1890 COSMIC
COSN17037821 2003 COSMIC
COSN29379256 2061 COSMIC
COSN31490548 2080 COSMIC
COSN30300697 2083 COSMIC
COSN20237333 2316 COSMIC
COSN27047496 2368 COSMIC
COSN25062222 2375 COSMIC
COSN28391598 2460 COSMIC
COSN25244829 2518 COSMIC
COSN21508112 2540 COSMIC
COSN26695431 2570 COSMIC
COSN18900181 2639 COSMIC
COSN14739828 2964 COSMIC
COSN23987772 3024 COSMIC
COSN6338192 3116 COSMIC
COSN1338624 3220 COSMIC
COSN24620183 3229 COSMIC
COSN29280970 3362 COSMIC
COSN28196247 3368 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1402692845 3 dbSNP
rs912389029 4 dbSNP
rs1422924706 5 dbSNP
rs757903473 6 dbSNP
rs753328661 7 dbSNP
rs1373485425 20 dbSNP
rs763713981 23 dbSNP
rs755745116 24 dbSNP
rs752327925 27 dbSNP
rs1410908220 30 dbSNP
rs370735721 33 dbSNP
rs376612256 35 dbSNP
rs990198636 37 dbSNP
rs1269787881 39 dbSNP
rs201212409 42 dbSNP
rs373816341 45 dbSNP
rs1314200690 59 dbSNP
rs1208051318 62 dbSNP
rs1489456524 69 dbSNP
rs957062544 94 dbSNP
rs781104624 101 dbSNP
rs977660971 108 dbSNP
rs1236298716 112 dbSNP
rs1438775916 114 dbSNP
rs757242976 119 dbSNP
rs926939905 121 dbSNP
rs1426773311 126 dbSNP
rs971677696 129 dbSNP
rs1348732022 132 dbSNP
rs1174961782 137 dbSNP
rs1354606029 138 dbSNP
rs1276690888 140 dbSNP
rs978401888 145 dbSNP
rs575888073 146 dbSNP
rs1024459419 151 dbSNP
rs1375334864 154 dbSNP
rs1013112133 157 dbSNP
rs947593964 162 dbSNP
rs1275838243 164 dbSNP
rs1370245040 170 dbSNP
rs913481867 173 dbSNP
rs1278271241 176 dbSNP
rs866955116 182 dbSNP
rs989491157 190 dbSNP
rs1256030969 191 dbSNP
rs1457276364 197 dbSNP
rs1199555047 198 dbSNP
rs954886639 200 dbSNP
rs1402986411 201 dbSNP
rs1030516161 205 dbSNP
rs1466672243 213 dbSNP
rs1346770606 217 dbSNP
rs1167956789 218 dbSNP
rs555835322 225 dbSNP
rs1027759695 236 dbSNP
rs995209828 240 dbSNP
rs1399759499 241 dbSNP
rs868184358 244 dbSNP
rs777588718 255 dbSNP
rs964790944 258 dbSNP
rs1480465080 259 dbSNP
rs1274415073 273 dbSNP
rs370112048 281 dbSNP
rs78842577 291 dbSNP
rs1276361150 292 dbSNP
rs1210353899 293 dbSNP
rs41273625 293 dbSNP
rs553067227 298 dbSNP
rs1292009531 300 dbSNP
rs1025543934 301 dbSNP
rs144070283 306 dbSNP
rs1263407068 314 dbSNP
rs932519625 323 dbSNP
rs1445559091 325 dbSNP
rs1280974274 328 dbSNP
rs1191131736 330 dbSNP
rs1422249693 340 dbSNP
rs920973272 341 dbSNP
rs1164332807 347 dbSNP
rs1322961152 349 dbSNP
rs1054218537 352 dbSNP
rs1281404140 353 dbSNP
rs1056914009 354 dbSNP
rs1402047183 358 dbSNP
rs1296655553 359 dbSNP
rs1339917018 368 dbSNP
rs1221628041 384 dbSNP
rs935769144 388 dbSNP
rs924269667 390 dbSNP
rs1285816764 396 dbSNP
rs377007286 402 dbSNP
rs1227481877 406 dbSNP
rs1286443290 410 dbSNP
rs971623882 430 dbSNP
rs1214003780 455 dbSNP
rs58132930 456 dbSNP
rs1205643459 462 dbSNP
rs1270620834 465 dbSNP
rs917518469 469 dbSNP
rs570479983 476 dbSNP
rs958906780 482 dbSNP
rs1370651371 489 dbSNP
rs374344966 495 dbSNP
rs1338257202 506 dbSNP
rs561575454 508 dbSNP
rs947054928 514 dbSNP
rs1421965193 517 dbSNP
rs912917693 521 dbSNP
rs994925292 533 dbSNP
rs536889598 535 dbSNP
rs1014860496 553 dbSNP
rs1008882171 554 dbSNP
rs1336271837 562 dbSNP
rs139089374 563 dbSNP
rs150887941 575 dbSNP
rs1474615742 584 dbSNP
rs1355570406 587 dbSNP
rs1239541998 618 dbSNP
rs879730226 633 dbSNP
rs1345303321 637 dbSNP
rs774839938 641 dbSNP
rs376059398 647 dbSNP
rs1253420873 666 dbSNP
rs1441405966 669 dbSNP
rs1183504307 678 dbSNP
rs529215774 687 dbSNP
rs997049994 690 dbSNP
rs899656790 694 dbSNP
rs560137620 697 dbSNP
rs546619166 700 dbSNP
rs533451975 702 dbSNP
rs1174576130 703 dbSNP
rs1400158583 705 dbSNP
rs564465919 710 dbSNP
rs141511769 727 dbSNP
rs867794653 742 dbSNP
rs1379060422 745 dbSNP
rs935717059 756 dbSNP
rs766641001 757 dbSNP
rs1200600082 762 dbSNP
rs1041374136 766 dbSNP
rs1331508240 773 dbSNP
rs949715382 776 dbSNP
rs917452571 777 dbSNP
rs950736471 782 dbSNP
rs1343596094 783 dbSNP
rs1026748259 786 dbSNP
rs575755807 792 dbSNP
rs991766043 804 dbSNP
rs1459498582 805 dbSNP
rs771341239 810 dbSNP
rs1177368632 812 dbSNP
rs551642366 819 dbSNP
rs920772642 831 dbSNP
rs973567142 832 dbSNP
rs542553998 835 dbSNP
rs1359641126 849 dbSNP
rs1376147566 855 dbSNP
rs1316829282 858 dbSNP
rs41273545 863 dbSNP
rs189259446 877 dbSNP
rs1042798867 882 dbSNP
rs539473321 885 dbSNP
rs1334193885 888 dbSNP
rs1008829745 890 dbSNP
rs1463054479 893 dbSNP
rs891436083 894 dbSNP
rs954716968 897 dbSNP
rs1298651557 902 dbSNP
rs768112576 909 dbSNP
rs1408664338 916 dbSNP
rs933524089 918 dbSNP
rs1218662664 919 dbSNP
rs762449697 921 dbSNP
rs775029170 923 dbSNP
rs1197299325 925 dbSNP
rs923507219 928 dbSNP
rs1488980314 935 dbSNP
rs1164534123 940 dbSNP
rs1444311885 947 dbSNP
rs1265488606 950 dbSNP
rs899769145 950 dbSNP
rs1194700272 967 dbSNP
rs768851772 968 dbSNP
rs1476915198 975 dbSNP
rs1054280906 977 dbSNP
rs867136929 978 dbSNP
rs1368989207 986 dbSNP
rs909402856 988 dbSNP
rs1364789744 990 dbSNP
rs1400195550 996 dbSNP
rs1299730118 999 dbSNP
rs1337760902 1004 dbSNP
rs984865553 1008 dbSNP
rs1295412830 1010 dbSNP
rs1000041780 1014 dbSNP
rs1480982361 1017 dbSNP
rs576862153 1022 dbSNP
rs1232332545 1023 dbSNP
rs1247683823 1029 dbSNP
rs902908816 1032 dbSNP
rs1264013476 1033 dbSNP
rs745370929 1039 dbSNP
rs950883523 1046 dbSNP
rs1217603776 1047 dbSNP
rs1265627058 1051 dbSNP
rs1203756557 1052 dbSNP
rs148343742 1061 dbSNP
rs919226682 1061 dbSNP
rs1226576116 1067 dbSNP
rs1293675854 1069 dbSNP
rs537210040 1070 dbSNP
rs568179102 1074 dbSNP
rs774940584 1077 dbSNP
rs1425465515 1078 dbSNP
rs1358354150 1079 dbSNP
rs35956234 1091 dbSNP
rs895476918 1094 dbSNP
rs1420140461 1097 dbSNP
rs1160026641 1098 dbSNP
rs1358240529 1100 dbSNP
rs1429368622 1116 dbSNP
rs960728569 1123 dbSNP
rs1380756629 1126 dbSNP
rs1398296905 1136 dbSNP
rs1313623152 1152 dbSNP
rs1035569618 1156 dbSNP
rs1241332103 1158 dbSNP
rs548782900 1161 dbSNP
rs937591253 1166 dbSNP
rs199733455 1172 dbSNP
rs866045845 1172 dbSNP
rs1011284914 1173 dbSNP
rs920874790 1177 dbSNP
rs1440010249 1180 dbSNP
rs1180312795 1212 dbSNP
rs1392735331 1214 dbSNP
rs1373459204 1227 dbSNP
rs973514732 1230 dbSNP
rs9342356 1233 dbSNP
rs940880931 1243 dbSNP
rs548053994 1249 dbSNP
rs907931616 1252 dbSNP
rs866525422 1259 dbSNP
rs891544571 1264 dbSNP
rs987508133 1271 dbSNP
rs954998580 1277 dbSNP
rs771447860 1280 dbSNP
rs1223428203 1283 dbSNP
rs1279676999 1284 dbSNP
rs1313967395 1287 dbSNP
rs1028974939 1301 dbSNP
rs1176332384 1302 dbSNP
rs1201860516 1306 dbSNP
rs975175626 1311 dbSNP
rs1458179591 1322 dbSNP
rs1164680238 1326 dbSNP
rs1200508631 1327 dbSNP
rs769558376 1328 dbSNP
rs1032945181 1329 dbSNP
rs369941405 1333 dbSNP
rs1426833123 1338 dbSNP
rs534583872 1348 dbSNP
rs1161593936 1358 dbSNP
rs556605977 1365 dbSNP
rs1466572396 1372 dbSNP
rs1419843028 1382 dbSNP
rs1334030182 1389 dbSNP
rs757856310 1390 dbSNP
rs1441952007 1398 dbSNP
rs1275597527 1400 dbSNP
rs1020166198 1403 dbSNP
rs1014012183 1409 dbSNP
rs1282705797 1418 dbSNP
rs184035189 1419 dbSNP
rs1220371822 1427 dbSNP
rs1482069205 1431 dbSNP
rs1270939150 1434 dbSNP
rs1055453435 1437 dbSNP
rs1490135290 1443 dbSNP
rs937017083 1444 dbSNP
rs919329338 1448 dbSNP
rs1296968684 1449 dbSNP
rs992242940 1456 dbSNP
rs899392251 1461 dbSNP
rs1478550081 1470 dbSNP
rs1173386730 1474 dbSNP
rs1417999627 1475 dbSNP
rs546578289 1485 dbSNP
rs940980840 1493 dbSNP
rs1324645129 1500 dbSNP
rs1317070732 1505 dbSNP
rs1403306183 1506 dbSNP
rs939338307 1509 dbSNP
rs908047088 1510 dbSNP
rs987621862 1511 dbSNP
rs1221560602 1515 dbSNP
rs933405490 1516 dbSNP
rs970381610 1517 dbSNP
rs1291721898 1538 dbSNP
rs758870634 1538 dbSNP
rs990381089 1538 dbSNP
rs560743213 1541 dbSNP
rs774885951 1545 dbSNP
rs748254352 1558 dbSNP
rs1263476372 1571 dbSNP
rs745369209 1581 dbSNP
rs1488947674 1582 dbSNP
rs1190440722 1593 dbSNP
rs1404836793 1595 dbSNP
rs1475363494 1611 dbSNP
rs1364122067 1613 dbSNP
rs922021998 1615 dbSNP
rs955936016 1615 dbSNP
rs1423139754 1626 dbSNP
rs974744991 1630 dbSNP
rs958279059 1633 dbSNP
rs1316283624 1638 dbSNP
rs997297522 1642 dbSNP
rs1448664668 1643 dbSNP
rs1285946394 1645 dbSNP
rs1344823703 1647 dbSNP
rs1380231646 1651 dbSNP
rs1244983326 1655 dbSNP
rs781359652 1658 dbSNP
rs1481444693 1664 dbSNP
rs533215280 1679 dbSNP
rs1055692 1682 dbSNP
rs868371710 1689 dbSNP
rs770827794 1693 dbSNP
rs978670009 1694 dbSNP
rs1480037432 1701 dbSNP
rs1017301503 1708 dbSNP
rs1007776981 1711 dbSNP
rs967328882 1728 dbSNP
rs1049355300 1735 dbSNP
rs1381369648 1742 dbSNP
rs147330300 1743 dbSNP
rs1014534220 1744 dbSNP
rs746913381 1745 dbSNP
rs1259760621 1748 dbSNP
rs1034533178 1749 dbSNP
rs763679929 1752 dbSNP
rs898826407 1770 dbSNP
rs1037369140 1778 dbSNP
rs1005072177 1781 dbSNP
rs1451585770 1784 dbSNP
rs1283313147 1785 dbSNP
rs939456233 1792 dbSNP
rs926585116 1796 dbSNP
rs1278600997 1800 dbSNP
rs1345015691 1801 dbSNP
rs3214989 1801 dbSNP
rs397805900 1801 dbSNP
rs550808046 1801 dbSNP
rs191733379 1813 dbSNP
rs1051849262 1815 dbSNP
rs946770493 1817 dbSNP
rs1421309375 1819 dbSNP
rs1179851493 1822 dbSNP
rs914469428 1826 dbSNP
rs1478374715 1831 dbSNP
rs1178708068 1851 dbSNP
rs1298271845 1864 dbSNP
rs1332039818 1864 dbSNP
rs1404064689 1864 dbSNP
rs1398355012 1865 dbSNP
rs1389461574 1869 dbSNP
rs990104143 1879 dbSNP
rs956052547 1896 dbSNP
rs1930932 1900 dbSNP
rs933501688 1906 dbSNP
rs1471052920 1911 dbSNP
rs1280769635 1926 dbSNP
rs1406944315 1928 dbSNP
rs1031523876 1934 dbSNP
rs975808999 1941 dbSNP
rs35401776 1951 dbSNP
rs1469289264 1952 dbSNP
rs562292049 1954 dbSNP
rs867712769 1958 dbSNP
rs752049255 1968 dbSNP
rs1039534841 1972 dbSNP
rs965790127 1981 dbSNP
rs1201919077 1992 dbSNP
rs1427289113 1993 dbSNP
rs561025741 1998 dbSNP
rs1374751463 2002 dbSNP
rs573562890 2005 dbSNP
rs1167081310 2009 dbSNP
rs1260726668 2014 dbSNP
rs1391235854 2018 dbSNP
rs887490984 2022 dbSNP
rs1300970882 2023 dbSNP
rs1186305855 2025 dbSNP
rs1028304399 2032 dbSNP
rs1400084706 2033 dbSNP
rs752600485 2057 dbSNP
rs1263221373 2058 dbSNP
rs1251079343 2059 dbSNP
rs780123316 2065 dbSNP
rs1357581166 2071 dbSNP
rs756450482 2080 dbSNP
rs1056560709 2083 dbSNP
rs1267059372 2093 dbSNP
rs144055555 2096 dbSNP
rs1490194371 2097 dbSNP
rs865981506 2100 dbSNP
rs1003547938 2105 dbSNP
rs913166908 2109 dbSNP
rs188793705 2111 dbSNP
rs1426628989 2113 dbSNP
rs1169733003 2119 dbSNP
rs1368815622 2121 dbSNP
rs1426332665 2133 dbSNP
rs576766958 2134 dbSNP
rs1034069295 2138 dbSNP
rs1419723488 2139 dbSNP
rs1293813544 2156 dbSNP
rs1290096139 2168 dbSNP
rs1381022481 2179 dbSNP
rs575587535 2180 dbSNP
rs757017519 2181 dbSNP
rs1295572993 2183 dbSNP
rs1454788039 2184 dbSNP
rs1248659806 2187 dbSNP
rs1383798097 2187 dbSNP
rs565147340 2191 dbSNP
rs376957238 2198 dbSNP
rs1217670053 2216 dbSNP
rs1400033028 2218 dbSNP
rs1169612537 2224 dbSNP
rs1262562078 2230 dbSNP
rs202190335 2232 dbSNP
rs1004516988 2234 dbSNP
rs1256784801 2237 dbSNP
rs1446189424 2239 dbSNP
rs886667830 2241 dbSNP
rs536768595 2243 dbSNP
rs1462389244 2249 dbSNP
rs934616022 2268 dbSNP
rs1384435579 2272 dbSNP
rs867292170 2277 dbSNP
rs753761090 2278 dbSNP
rs1372302459 2283 dbSNP
rs1160925458 2286 dbSNP
rs1052447694 2287 dbSNP
rs1452451151 2292 dbSNP
rs997659012 2293 dbSNP
rs1166407818 2301 dbSNP
rs1455096830 2302 dbSNP
rs184515015 2308 dbSNP
rs1382586834 2317 dbSNP
rs192309813 2318 dbSNP
rs1182494084 2319 dbSNP
rs965902613 2324 dbSNP
rs910301776 2331 dbSNP
rs534545463 2349 dbSNP
rs1215195576 2352 dbSNP
rs936734754 2362 dbSNP
rs951790122 2371 dbSNP
rs1201737964 2375 dbSNP
rs368775158 2376 dbSNP
rs345741 2380 dbSNP
rs1273016975 2390 dbSNP
rs1042383914 2405 dbSNP
rs962278281 2407 dbSNP
rs763224115 2413 dbSNP
rs558429473 2415 dbSNP
rs539777307 2423 dbSNP
rs1314593587 2426 dbSNP
rs1335385302 2428 dbSNP
rs1244003936 2434 dbSNP
rs993161795 2446 dbSNP
rs960023090 2454 dbSNP
rs1329557114 2480 dbSNP
rs1223469767 2483 dbSNP
rs1283977549 2500 dbSNP
rs927100847 2502 dbSNP
rs570776061 2503 dbSNP
rs1306014590 2515 dbSNP
rs1438124657 2524 dbSNP
rs775983195 2528 dbSNP
rs138297561 2540 dbSNP
rs868289191 2541 dbSNP
rs62414212 2550 dbSNP
rs1199774728 2555 dbSNP
rs1471574731 2567 dbSNP
rs924516467 2577 dbSNP
rs10806473 2578 dbSNP
rs944504284 2579 dbSNP
rs377056780 2580 dbSNP
rs1172946565 2587 dbSNP
rs1353170700 2600 dbSNP
rs183876070 2601 dbSNP
rs1437822512 2604 dbSNP
rs1250223036 2606 dbSNP
rs1347396795 2608 dbSNP
rs950393039 2620 dbSNP
rs1225239496 2625 dbSNP
rs1030030878 2632 dbSNP
rs1282500409 2638 dbSNP
rs34175783 2639 dbSNP
rs1339964483 2640 dbSNP
rs1216312331 2641 dbSNP
rs998175766 2642 dbSNP
rs985574095 2658 dbSNP
rs1490625190 2663 dbSNP
rs986255849 2665 dbSNP
rs1306775167 2674 dbSNP
rs900779579 2678 dbSNP
rs1198104037 2679 dbSNP
rs142329466 2679 dbSNP
rs1242235066 2681 dbSNP
rs1226833567 2682 dbSNP
rs1018178471 2686 dbSNP
rs528743058 2689 dbSNP
rs1280281283 2690 dbSNP
rs1417805627 2696 dbSNP
rs1238404709 2698 dbSNP
rs1409750954 2700 dbSNP
rs71542006 2700 dbSNP
rs1349845891 2708 dbSNP
rs1367705546 2709 dbSNP
rs971748832 2712 dbSNP
rs1302608854 2713 dbSNP
rs961724593 2715 dbSNP
rs560040839 2719 dbSNP
rs903917257 2721 dbSNP
rs1042499017 2722 dbSNP
rs982356763 2727 dbSNP
rs969497471 2732 dbSNP
rs867988170 2737 dbSNP
rs1356786521 2751 dbSNP
rs1403317833 2760 dbSNP
rs1221343112 2764 dbSNP
rs1284328295 2765 dbSNP
rs1448294098 2770 dbSNP
rs1386672483 2785 dbSNP
rs1023824976 2790 dbSNP
rs1011370398 2791 dbSNP
rs1469154696 2796 dbSNP
rs1387530516 2797 dbSNP
rs945325131 2800 dbSNP
rs546195509 2801 dbSNP
rs1162960829 2803 dbSNP
rs896471202 2817 dbSNP
rs1031539926 2832 dbSNP
rs1402540964 2834 dbSNP
rs1316076821 2835 dbSNP
rs1344569077 2836 dbSNP
rs1453337948 2858 dbSNP
rs532104624 2868 dbSNP
rs1316862942 2870 dbSNP
rs1380381095 2880 dbSNP
rs1244782481 2881 dbSNP
rs1279773243 2886 dbSNP
rs770384012 2890 dbSNP
rs192616485 2897 dbSNP
rs543439076 2899 dbSNP
rs938584358 2904 dbSNP
rs1221596170 2913 dbSNP
rs1409078605 2915 dbSNP
rs1464814236 2915 dbSNP
rs1204929177 2928 dbSNP
rs1245354915 2930 dbSNP
rs148905252 2931 dbSNP
rs1187036931 2932 dbSNP
rs901199036 2933 dbSNP
rs1040303369 2935 dbSNP
rs1202548339 2942 dbSNP
rs927244770 2945 dbSNP
rs574184913 2949 dbSNP
rs1268629206 2958 dbSNP
rs1470242561 2959 dbSNP
rs187646556 2961 dbSNP
rs540778755 2962 dbSNP
rs571916669 2964 dbSNP
rs763244637 2967 dbSNP
rs1050279013 2968 dbSNP
rs777507683 2969 dbSNP
rs1341970057 2980 dbSNP
rs1236474962 2986 dbSNP
rs1327200322 2988 dbSNP
rs1358719301 2994 dbSNP
rs772101917 2998 dbSNP
rs1323710870 2999 dbSNP
rs1265028139 3001 dbSNP
rs1265560309 3002 dbSNP
rs1225278900 3003 dbSNP
rs773725846 3017 dbSNP
rs1251742563 3021 dbSNP
rs1439755437 3022 dbSNP
rs1048177 3024 dbSNP
rs182308872 3025 dbSNP
rs1480806273 3038 dbSNP
rs1178427992 3041 dbSNP
rs1427137860 3070 dbSNP
rs972246430 3070 dbSNP
rs1168247266 3088 dbSNP
rs975803760 3095 dbSNP
rs1398422004 3098 dbSNP
rs1307035571 3105 dbSNP
rs940346281 3110 dbSNP
rs754849836 3121 dbSNP
rs1285704564 3135 dbSNP
rs1339152296 3138 dbSNP
rs1318601130 3147 dbSNP
rs1233222108 3152 dbSNP
rs879074409 3156 dbSNP
rs879202043 3157 dbSNP
rs1456337459 3159 dbSNP
rs927644531 3161 dbSNP
rs1177882255 3173 dbSNP
rs1274205213 3173 dbSNP
rs1017874438 3176 dbSNP
rs1490519298 3183 dbSNP
rs969617412 3191 dbSNP
rs1000996418 3193 dbSNP
rs1432500341 3201 dbSNP
rs746036615 3202 dbSNP
rs904030379 3206 dbSNP
rs989658929 3207 dbSNP
rs958489473 3212 dbSNP
rs1426209001 3213 dbSNP
rs1031067292 3217 dbSNP
rs1366363275 3219 dbSNP
rs569963470 3220 dbSNP
rs1009636860 3221 dbSNP
rs1296925547 3229 dbSNP
rs1476574337 3233 dbSNP
rs1328506200 3234 dbSNP
rs781578949 3241 dbSNP
rs901146834 3250 dbSNP
rs1225061161 3259 dbSNP
rs776748444 3264 dbSNP
rs34207193 3265 dbSNP
rs1289662803 3277 dbSNP
rs896598216 3279 dbSNP
rs190016097 3281 dbSNP
rs1263796768 3282 dbSNP
rs889028812 3287 dbSNP
rs1187665418 3288 dbSNP
rs938042948 3295 dbSNP
rs905734620 3310 dbSNP
rs1446070214 3318 dbSNP
rs1161356625 3319 dbSNP
rs1044297528 3324 dbSNP
rs941983632 3328 dbSNP
rs909045824 3330 dbSNP
rs1348724623 3331 dbSNP
rs536786164 3336 dbSNP
rs1289912052 3338 dbSNP
rs751729933 3347 dbSNP
rs1320275675 3359 dbSNP
rs1324258949 3365 dbSNP
rs1248365808 3379 dbSNP
rs187168420 3379 dbSNP
rs369361754 3380 dbSNP
rs923059898 3384 dbSNP
rs1217366797 3385 dbSNP
rs1036040027 3407 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 2045.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 "PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000369303.4 | 3UTR | UUAUCUAAAAAUUAAUCUGAGCACAUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000369303.4 | 3UTR | UUAUCUAAAAAUUAAUCUGAGCACAUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000369303.4 | 3UTR | UCAAGAUUUUUUCAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000369303.4 | 3UTR | UCAAGAUUUUUUCAUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE32688 Pancreatic cancer 0.589 2.0e-4 0.264 7.2e-2 32 Click to see details
GSE21032 Prostate cancer -0.325 1.4e-3 -0.305 2.5e-3 83 Click to see details
GSE28260 Renal cortex and medulla -0.725 2.5e-3 -0.707 3.4e-3 13 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.486 6.9e-3 0.275 9.2e-2 25 Click to see details
GSE28544 Breast cancer 0.391 2.9e-2 0.458 1.2e-2 24 Click to see details
GSE19350 CNS germ cell tumors 0.485 5.5e-2 0.573 2.6e-2 12 Click to see details
GSE26953 Aortic valvular endothelial cells -0.26 1.1e-1 -0.371 3.7e-2 24 Click to see details
GSE19783 ER- ER- breast cancer -0.123 1.4e-1 -0.199 3.9e-2 79 Click to see details
GSE19536 Breast cancer -0.099 1.6e-1 -0.097 1.7e-1 100 Click to see details
GSE27834 Pluripotent stem cells 0.249 1.8e-1 0.282 1.4e-1 16 Click to see details
GSE17498 Multiple myeloma -0.146 1.8e-1 -0.176 1.4e-1 40 Click to see details
GSE19783 ER+ ER+ breast cancer -0.211 1.9e-1 -0.141 2.8e-1 20 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.183 1.9e-1 0.111 3.0e-1 25 Click to see details
GSE17306 Multiple myeloma 0.047 3.7e-1 -0.081 2.9e-1 49 Click to see details
GSE21849 B cell lymphoma -0.059 3.8e-1 0.414 1.3e-2 29 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.128 3.8e-1 0.143 3.7e-1 8 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.027 4.6e-1 -0.081 3.7e-1 20 Click to see details
GSE21687 Ependynoma primary tumors -0.014 4.6e-1 -0.040 3.8e-1 64 Click to see details
GSE14794 Lymphoblastoid cells 0.007 4.7e-1 0.023 4.1e-1 90 Click to see details
GSE38226 Liver fibrosis -0.013 4.8e-1 -0.654 6.5e-4 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
459 hsa-miR-548c-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055126 SCD stearoyl-CoA desaturase 2 2
MIRT055360 PDCD4 programmed cell death 4 2 2
MIRT057340 PANK1 pantothenate kinase 1 2 2
MIRT058532 PRDM10 PR/SET domain 10 2 2
MIRT064700 CCND2 cyclin D2 2 4
MIRT068070 SPATA13 spermatogenesis associated 13 2 4
MIRT069438 CDCA4 cell division cycle associated 4 2 4
MIRT070546 EXOC5 exocyst complex component 5 2 2
MIRT070866 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT071492 CALM1 calmodulin 1 2 6
MIRT077694 ZNF652 zinc finger protein 652 2 2
MIRT078290 RPS6KB1 ribosomal protein S6 kinase B1 2 2
MIRT080233 SMAD4 SMAD family member 4 2 6
MIRT080612 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT081130 LDLR low density lipoprotein receptor 2 6
MIRT083622 NCOA3 nuclear receptor coactivator 3 2 2
MIRT088674 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT089617 MAT2A methionine adenosyltransferase 2A 2 2
MIRT091138 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT091699 TGFBR2 transforming growth factor beta receptor 2 2 4
MIRT093590 SPCS3 signal peptidase complex subunit 3 2 2
MIRT096243 CANX calnexin 2 2
MIRT099747 SOX4 SRY-box 4 2 6
MIRT101977 EPHA7 EPH receptor A7 2 4
MIRT102959 EN2 engrailed homeobox 2 2 4
MIRT107464 NFIB nuclear factor I B 2 2
MIRT107876 FXN frataxin 2 2
MIRT110174 ZNF711 zinc finger protein 711 2 2
MIRT115410 UNKL unkempt family like zinc finger 2 4
MIRT121611 LMNB1 lamin B1 2 2
MIRT130394 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT134673 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT142311 RBBP6 RB binding protein 6, ubiquitin ligase 2 2
MIRT165349 AFF4 AF4/FMR2 family member 4 2 2
MIRT165649 DCTN4 dynactin subunit 4 2 2
MIRT166971 FCHO2 FCH domain only 2 2 2
MIRT176163 PGK1 phosphoglycerate kinase 1 2 2
MIRT181740 UHMK1 U2AF homology motif kinase 1 2 4
MIRT186876 CCNT1 cyclin T1 2 2
MIRT187285 DAZAP2 DAZ associated protein 2 2 2
MIRT188824 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 4
MIRT196761 CRLF3 cytokine receptor like factor 3 2 2
MIRT200994 ZNF805 zinc finger protein 805 2 4
MIRT203681 DIP2A disco interacting protein 2 homolog A 2 2
MIRT206304 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT208377 SLC25A36 solute carrier family 25 member 36 2 2
MIRT211083 C4ORF32 family with sequence similarity 241 member A 2 2
MIRT211231 FGF2 fibroblast growth factor 2 2 6
MIRT212651 SH3BP2 SH3 domain binding protein 2 2 2
MIRT217310 FOXO3 forkhead box O3 2 2
MIRT218910 GLO1 glyoxalase I 2 4
MIRT223962 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT242382 TMC5 transmembrane channel like 5 2 2
MIRT262836 CCDC6 coiled-coil domain containing 6 2 2
MIRT264533 TARDBP TAR DNA binding protein 2 6
MIRT273412 SLC11A2 solute carrier family 11 member 2 2 2
MIRT274711 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT275277 NUDT4 nudix hydrolase 4 2 2
MIRT298516 SPOPL speckle type BTB/POZ protein like 2 2
MIRT298567 BRWD1 bromodomain and WD repeat domain containing 1 2 2
MIRT302422 CLIP4 CAP-Gly domain containing linker protein family member 4 2 4
MIRT320613 ZNRF2 zinc and ring finger 2 2 2
MIRT320791 PURB purine rich element binding protein B 2 2
MIRT322922 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT340714 MZT1 mitotic spindle organizing protein 1 2 2
MIRT347234 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT348559 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT354233 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT354310 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT358523 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT362352 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT363825 GOLGA7 golgin A7 2 2
MIRT367234 RPL5 ribosomal protein L5 2 6
MIRT368206 ADIPOR2 adiponectin receptor 2 2 2
MIRT372013 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 4
MIRT374304 ZBTB39 zinc finger and BTB domain containing 39 2 2
MIRT377387 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT379837 USP6NL USP6 N-terminal like 2 8
MIRT392413 RREB1 ras responsive element binding protein 1 2 4
MIRT395591 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT400810 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT401743 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT408462 MTX3 metaxin 3 2 2
MIRT441521 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT442173 AZF1 azoospermia factor 1 2 2
MIRT443086 ABLIM1 actin binding LIM protein 1 2 2
MIRT443391 CHML CHM like, Rab escort protein 2 2 2
MIRT443459 ANP32B acidic nuclear phosphoprotein 32 family member B 2 6
MIRT443653 MRAS muscle RAS oncogene homolog 2 2
MIRT443718 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT443963 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT444249 CTNND1 catenin delta 1 2 2
MIRT444795 TMEM251 transmembrane protein 251 2 2
MIRT444943 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT445180 ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 2 2
MIRT445334 CWC27 CWC27 spliceosome associated protein homolog 2 2
MIRT445707 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT446048 TPR translocated promoter region, nuclear basket protein 2 2
MIRT446091 ENAH ENAH, actin regulator 2 2
MIRT446236 FZD6 frizzled class receptor 6 2 4
MIRT446543 GOLGA8B golgin A8 family member B 2 2
MIRT446592 FBXO40 F-box protein 40 2 2
MIRT446741 MYEF2 myelin expression factor 2 2 2
MIRT446775 ATAD5 ATPase family, AAA domain containing 5 2 2
MIRT447451 ADM adrenomedullin 2 2
MIRT447801 EPC2 enhancer of polycomb homolog 2 2 2
MIRT448179 IL1RAP interleukin 1 receptor accessory protein 2 4
MIRT448773 GOLGA8A golgin A8 family member A 2 2
MIRT449473 HAT1 histone acetyltransferase 1 2 2
MIRT449635 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT450237 CDKN2AIP CDKN2A interacting protein 2 2
MIRT450379 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT450506 ALPK3 alpha kinase 3 2 2
MIRT451500 FOPNL FGFR1OP N-terminal like 2 2
MIRT452105 NUCB2 nucleobindin 2 2 2
MIRT456851 ZNF460 zinc finger protein 460 2 2
MIRT463263 ZIC5 Zic family member 5 2 4
MIRT463348 ZFHX3 zinc finger homeobox 3 2 2
MIRT464778 UBE2G1 ubiquitin conjugating enzyme E2 G1 2 2
MIRT467594 SLC7A5 solute carrier family 7 member 5 2 6
MIRT468223 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468469 SET SET nuclear proto-oncogene 2 4
MIRT469368 REST RE1 silencing transcription factor 2 6
MIRT470526 PPP1CC protein phosphatase 1 catalytic subunit gamma 2 4
MIRT472908 MT1E metallothionein 1E 2 2
MIRT473336 METTL21A methyltransferase like 21A 2 2
MIRT476666 FXR1 FMR1 autosomal homolog 1 2 2
MIRT477145 FAM102B family with sequence similarity 102 member B 2 2
MIRT478928 CPNE3 copine 3 2 2
MIRT479047 COIL coilin 2 8
MIRT481917 ANKRD40 ankyrin repeat domain 40 2 6
MIRT483700 BICD2 BICD cargo adaptor 2 2 8
MIRT483889 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT484733 SF3A1 splicing factor 3a subunit 1 2 2
MIRT485053 THBS1 thrombospondin 1 2 2
MIRT485497 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT485747 CALCR calcitonin receptor 2 2
MIRT486125 MT2A metallothionein 2A 2 2
MIRT494099 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT494103 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT499091 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT501109 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503173 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT504132 RCC1 regulator of chromosome condensation 1 2 6
MIRT504717 DLC1 DLC1 Rho GTPase activating protein 2 6
MIRT505379 TMEM154 transmembrane protein 154 2 4
MIRT505657 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT505887 RNF219 ring finger protein 219 2 2
MIRT506525 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT507083 GXYLT1 glucoside xylosyltransferase 1 2 6
MIRT507090 GPR180 G protein-coupled receptor 180 2 6
MIRT507174 GAN gigaxonin 2 10
MIRT507940 BTG3 BTG anti-proliferation factor 3 2 6
MIRT508316 RPL18 ribosomal protein L18 2 4
MIRT509452 CAPRIN1 cell cycle associated protein 1 2 4
MIRT509488 LARP1 La ribonucleoprotein domain family member 1 2 10
MIRT509609 GALK2 galactokinase 2 2 8
MIRT510229 PLEKHG3 pleckstrin homology and RhoGEF domain containing G3 2 8
MIRT510607 TPPP tubulin polymerization promoting protein 2 6
MIRT510842 RARB retinoic acid receptor beta 2 6
MIRT510983 PFN2 profilin 2 2 6
MIRT511370 IKZF4 IKAROS family zinc finger 4 2 6
MIRT512481 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 4
MIRT513061 LYPD6 LY6/PLAUR domain containing 6 2 6
MIRT513873 HOXA5 homeobox A5 2 2
MIRT515645 MYBPC1 myosin binding protein C, slow type 2 2
MIRT516649 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT516926 OSTF1 osteoclast stimulating factor 1 2 6
MIRT517348 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 2 6
MIRT519196 NAA38 LSM8 homolog, U6 small nuclear RNA associated 2 6
MIRT520215 WASL Wiskott-Aldrich syndrome like 2 8
MIRT520541 TRA2B transformer 2 beta homolog 2 4
MIRT521613 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT522258 NLK nemo like kinase 2 2
MIRT522809 KPNA3 karyopherin subunit alpha 3 2 6
MIRT522945 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT523347 GUCD1 guanylyl cyclase domain containing 1 2 4
MIRT523375 GSR glutathione-disulfide reductase 2 4
MIRT525158 ZNF329 zinc finger protein 329 2 2
MIRT526066 CCDC81 coiled-coil domain containing 81 2 2
MIRT526164 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT526182 HEPH hephaestin 2 2
MIRT526646 TRIM16L tripartite motif containing 16 like 2 2
MIRT527156 SCN9A sodium voltage-gated channel alpha subunit 9 2 4
MIRT527442 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527685 ZNF552 zinc finger protein 552 2 4
MIRT527751 NANOGNB NANOG neighbor homeobox 2 2
MIRT527788 TMEM44 transmembrane protein 44 2 8
MIRT528462 NXT2 nuclear transport factor 2 like export factor 2 2 4
MIRT528869 RSPH3 radial spoke head 3 homolog 2 2
MIRT529046 ARL9 ADP ribosylation factor like GTPase 9 2 2
MIRT529107 TLL2 tolloid like 2 2 2
MIRT529377 SKP1 S-phase kinase associated protein 1 2 4
MIRT529403 ICK intestinal cell kinase 2 2
MIRT529591 TMEM220 transmembrane protein 220 2 2
MIRT530213 NSUN7 NOP2/Sun RNA methyltransferase family member 7 2 2
MIRT530800 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT530839 MAPK7 mitogen-activated protein kinase 7 2 2
MIRT530859 TTLL5 tubulin tyrosine ligase like 5 2 2
MIRT531433 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT532311 HAUS3 HAUS augmin like complex subunit 3 2 4
MIRT532501 HOXA13 homeobox A13 2 2
MIRT532601 SIX4 SIX homeobox 4 2 2
MIRT533356 UBE2W ubiquitin conjugating enzyme E2 W 2 4
MIRT534389 SEPT2 septin 2 2 2
MIRT534798 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT536193 MAML3 mastermind like transcriptional coactivator 3 2 2
MIRT536243 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT536534 KCTD10 potassium channel tetramerization domain containing 10 2 2
MIRT536932 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 2 2
MIRT538628 CCSER2 coiled-coil serine rich protein 2 2 4
MIRT538836 C16orf70 chromosome 16 open reading frame 70 2 2
MIRT538944 BMP2K BMP2 inducible kinase 2 2
MIRT539038 ATXN7L1 ataxin 7 like 1 2 2
MIRT539379 ADSS adenylosuccinate synthase 2 6
MIRT539746 SH3RF2 SH3 domain containing ring finger 2 2 2
MIRT539879 RPL32 ribosomal protein L32 2 2
MIRT539956 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT540458 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT541611 ASB11 ankyrin repeat and SOCS box containing 11 2 2
MIRT543034 C15orf48 chromosome 15 open reading frame 48 2 2
MIRT544838 PLA2G16 phospholipase A2 group XVI 2 2
MIRT546177 TRIAP1 TP53 regulated inhibitor of apoptosis 1 2 2
MIRT546320 TM9SF3 transmembrane 9 superfamily member 3 2 4
MIRT546897 PTPRK protein tyrosine phosphatase, receptor type K 2 2
MIRT546950 SFTPA1 surfactant protein A1 2 2
MIRT547166 PDZD8 PDZ domain containing 8 2 2
MIRT547323 NPTN neuroplastin 2 2
MIRT547359 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT547562 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548082 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548218 FKBP1A FK506 binding protein 1A 2 2
MIRT548768 CNN3 calponin 3 2 2
MIRT548925 CDK6 cyclin dependent kinase 6 2 2
MIRT548954 CDC27 cell division cycle 27 2 2
MIRT549696 TLE3 transducin like enhancer of split 3 2 4
MIRT549734 NUP37 nucleoporin 37 2 2
MIRT549863 MCM4 minichromosome maintenance complex component 4 2 2
MIRT551070 MKLN1 muskelin 1 2 2
MIRT551194 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT552113 EMC7 ER membrane protein complex subunit 7 2 2
MIRT552236 SART3 squamous cell carcinoma antigen recognized by T-cells 3 2 2
MIRT552287 CBY1 chibby family member 1, beta catenin antagonist 2 4
MIRT552468 ZNF280B zinc finger protein 280B 2 2
MIRT553628 TJP1 tight junction protein 1 2 2
MIRT555507 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT556953 IGF1R insulin like growth factor 1 receptor 2 4
MIRT557203 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 4
MIRT557538 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 2
MIRT557603 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT558233 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT558261 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT558336 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558875 CCT6A chaperonin containing TCP1 subunit 6A 2 2
MIRT559684 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT559986 RPL24 ribosomal protein L24 2 2
MIRT561051 SKP2 S-phase kinase associated protein 2 2 2
MIRT561783 PAXBP1 PAX3 and PAX7 binding protein 1 2 2
MIRT561833 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT562588 CBX2 chromobox 2 2 2
MIRT562956 TNIP2 TNFAIP3 interacting protein 2 2 2
MIRT563047 NBPF12 NBPF member 12 2 2
MIRT563157 NOLC1 nucleolar and coiled-body phosphoprotein 1 2 2
MIRT563213 ZNF813 zinc finger protein 813 2 2
MIRT563436 SLC3A2 solute carrier family 3 member 2 2 2
MIRT563927 STAT2 signal transducer and activator of transcription 2 2 2
MIRT564149 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT564204 ABT1 activator of basal transcription 1 2 2
MIRT564214 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564637 ZNF562 zinc finger protein 562 2 4
MIRT564932 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 2
MIRT565587 SLC6A8 solute carrier family 6 member 8 2 2
MIRT565667 SIX1 SIX homeobox 1 2 2
MIRT566233 PTMA prothymosin, alpha 2 2
MIRT566237 PTCH1 patched 1 2 2
MIRT566454 PHAX phosphorylated adaptor for RNA export 2 4
MIRT566949 LEPROT leptin receptor overlapping transcript 2 2
MIRT567323 HMGB2 high mobility group box 2 2 2
MIRT568381 ATP13A3 ATPase 13A3 2 2
MIRT568427 ATF7IP activating transcription factor 7 interacting protein 2 4
MIRT571579 USP15 ubiquitin specific peptidase 15 2 2
MIRT572335 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT573391 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT573574 RANBP1 RAN binding protein 1 2 2
MIRT574388 UBE2N ubiquitin conjugating enzyme E2 N 2 2
MIRT576611 Ccdc117 coiled-coil domain containing 117 2 2
MIRT608962 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609962 ATF7IP2 activating transcription factor 7 interacting protein 2 2 2
MIRT611714 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT613603 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT614014 PAOX polyamine oxidase 2 2
MIRT614159 GNA14 G protein subunit alpha 14 2 2
MIRT614181 FAM53B family with sequence similarity 53 member B 2 2
MIRT614544 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 2 2
MIRT615284 FGF5 fibroblast growth factor 5 2 2
MIRT615831 PCSK7 proprotein convertase subtilisin/kexin type 7 2 2
MIRT618541 SEMA5A semaphorin 5A 2 2
MIRT619136 MCOLN3 mucolipin 3 2 2
MIRT619455 NUP214 nucleoporin 214 2 2
MIRT620038 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT620243 CCDC65 coiled-coil domain containing 65 2 2
MIRT620369 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT620474 CERS6 ceramide synthase 6 2 2
MIRT620881 KCTD7 potassium channel tetramerization domain containing 7 2 2
MIRT621948 STYX serine/threonine/tyrosine interacting protein 2 2
MIRT622156 SNTG1 syntrophin gamma 1 2 2
MIRT622312 SETD5 SET domain containing 5 2 2
MIRT622486 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT623190 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit 2 2
MIRT623650 HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 2 2
MIRT623655 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT624403 CCDC80 coiled-coil domain containing 80 2 4
MIRT624489 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 2 2
MIRT624694 AR androgen receptor 2 2
MIRT625011 PAK4 p21 (RAC1) activated kinase 4 2 2
MIRT625792 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha 2 2
MIRT625987 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT626122 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626394 ZMYM6 zinc finger MYM-type containing 6 2 2
MIRT626560 NAGS N-acetylglutamate synthase 2 2
MIRT626568 DRAM2 DNA damage regulated autophagy modulator 2 2 2
MIRT626647 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT626956 PRDM2 PR/SET domain 2 2 2
MIRT627868 PARVB parvin beta 2 2
MIRT628071 KCNJ13 potassium voltage-gated channel subfamily J member 13 2 2
MIRT628198 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 2 2
MIRT630547 GJB7 gap junction protein beta 7 2 2
MIRT633570 LAMP2 lysosomal associated membrane protein 2 2 2
MIRT635535 ELMOD2 ELMO domain containing 2 2 2
MIRT636219 SNAI2 snail family transcriptional repressor 2 2 2
MIRT636614 CLIC5 chloride intracellular channel 5 2 2
MIRT640754 ZBTB26 zinc finger and BTB domain containing 26 2 2
MIRT640996 PROK2 prokineticin 2 2 2
MIRT641143 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT642288 ZNF99 zinc finger protein 99 2 2
MIRT643506 ZNF28 zinc finger protein 28 2 2
MIRT644027 ZNF792 zinc finger protein 792 2 2
MIRT644073 PARG poly(ADP-ribose) glycohydrolase 2 2
MIRT644598 SPOP speckle type BTB/POZ protein 2 2
MIRT644631 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT644955 IFNB1 interferon beta 1 2 2
MIRT646357 CPT1B carnitine palmitoyltransferase 1B 2 2
MIRT647624 IGSF9B immunoglobulin superfamily member 9B 2 2
MIRT649089 FBXO25 F-box protein 25 2 4
MIRT649382 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT651176 ZNF319 zinc finger protein 319 2 2
MIRT652305 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT652393 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 2 2
MIRT652815 TBL2 transducin beta like 2 2 2
MIRT653111 SRSF1 serine and arginine rich splicing factor 1 2 2
MIRT653145 SRPK2 SRSF protein kinase 2 2 2
MIRT653815 SIN3A SIN3 transcription regulator family member A 2 2
MIRT653947 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 2 2
MIRT655157 PHF21A PHD finger protein 21A 2 2
MIRT655317 PDCD11 programmed cell death 11 2 2
MIRT656937 KIAA1456 KIAA1456 2 2
MIRT657000 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT657557 GSK3B glycogen synthase kinase 3 beta 2 2
MIRT657692 GPR135 G protein-coupled receptor 135 2 2
MIRT658251 FAXC failed axon connections homolog 2 2
MIRT658717 ELOVL4 ELOVL fatty acid elongase 4 2 2
MIRT659421 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT659488 CLDN1 claudin 1 2 2
MIRT659534 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT659574 CEP85L centrosomal protein 85 like 2 2
MIRT660570 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT661595 BMPR1B bone morphogenetic protein receptor type 1B 2 2
MIRT661844 ZNF587B zinc finger protein 587B 2 2
MIRT663397 COA4 cytochrome c oxidase assembly factor 4 homolog 2 2
MIRT664409 TNFRSF21 TNF receptor superfamily member 21 2 2
MIRT664804 GALC galactosylceramidase 2 2
MIRT664834 GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 2 2
MIRT666146 SP4 Sp4 transcription factor 2 2
MIRT666779 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT667105 SLC25A2 solute carrier family 25 member 2 2 2
MIRT667115 OLA1 Obg like ATPase 1 2 2
MIRT667504 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT668011 HCFC2 host cell factor C2 2 2
MIRT672876 TTC28 tetratricopeptide repeat domain 28 2 2
MIRT682598 CPA4 carboxypeptidase A4 2 2
MIRT683340 ZNF581 zinc finger protein 581 2 2
MIRT683581 CARD8 caspase recruitment domain family member 8 2 2
MIRT683691 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT683712 EXOSC6 exosome component 6 2 4
MIRT684560 ZNF708 zinc finger protein 708 2 2
MIRT685425 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT685509 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT686052 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686140 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT686425 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT687716 KLF2 Kruppel like factor 2 2 2
MIRT687727 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT688183 FRRS1 ferric chelate reductase 1 2 2
MIRT688306 FAM208A family with sequence similarity 208 member A 2 2
MIRT688420 DUSP2 dual specificity phosphatase 2 2 2
MIRT688491 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT688725 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689208 ZNF574 zinc finger protein 574 2 2
MIRT690340 DHX36 DEAH-box helicase 36 2 2
MIRT690516 ZNF845 zinc finger protein 845 2 2
MIRT690614 DCTN3 dynactin subunit 3 2 2
MIRT691051 RDH13 retinol dehydrogenase 13 2 2
MIRT691265 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT692171 RNF207 ring finger protein 207 2 2
MIRT692728 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT693384 ZNF528 zinc finger protein 528 2 2
MIRT694449 GSG2 histone H3 associated protein kinase 2 2
MIRT694485 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT695650 NUP205 nucleoporin 205 2 2
MIRT695803 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT696128 GLP2R glucagon like peptide 2 receptor 2 2
MIRT696694 APOC3 apolipoprotein C3 2 2
MIRT696888 SAMD15 sterile alpha motif domain containing 15 2 2
MIRT697790 UBXN7 UBX domain protein 7 2 2
MIRT698144 TNPO3 transportin 3 2 2
MIRT698363 TMEM127 transmembrane protein 127 2 2
MIRT698489 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699121 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT699849 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT701321 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT701386 NOA1 nitric oxide associated 1 2 2
MIRT701391 NLRC3 NLR family CARD domain containing 3 2 2
MIRT701954 MITF melanogenesis associated transcription factor 2 2
MIRT702167 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT702782 IFNLR1 interferon lambda receptor 1 2 2
MIRT703466 FOXJ3 forkhead box J3 2 2
MIRT703968 EMP2 epithelial membrane protein 2 2 2
MIRT703973 EMC10 ER membrane protein complex subunit 10 2 2
MIRT704350 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704603 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705272 BAHD1 bromo adjacent homology domain containing 1 2 2
MIRT707156 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707271 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT707461 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707505 AXL AXL receptor tyrosine kinase 2 2
MIRT707705 FAM118A family with sequence similarity 118 member A 2 2
MIRT707722 CDC6 cell division cycle 6 2 2
MIRT708018 TSPAN1 tetraspanin 1 2 2
MIRT708071 LIX1L limb and CNS expressed 1 like 2 2
MIRT708139 GK5 glycerol kinase 5 (putative) 2 2
MIRT710550 NR4A2 nuclear receptor subfamily 4 group A member 2 2 2
MIRT713228 GPR75 G protein-coupled receptor 75 2 2
MIRT713273 SPRTN SprT-like N-terminal domain 2 2
MIRT715622 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT716477 SESTD1 SEC14 and spectrin domain containing 1 2 2
MIRT716492 ZNF394 zinc finger protein 394 2 2
MIRT717715 NCKAP1 NCK associated protein 1 2 2
MIRT718046 ANAPC1 anaphase promoting complex subunit 1 2 2
MIRT719400 SLC15A4 solute carrier family 15 member 4 2 2
MIRT719899 PTGIS prostaglandin I2 synthase 2 2
MIRT720781 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722063 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
MIRT723234 FAM91A1 family with sequence similarity 91 member A1 2 2
MIRT723768 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT724057 FAM84A family with sequence similarity 84 member A 2 2
MIRT725194 SDAD1 SDA1 domain containing 1 2 2
MIRT735687 IL6ST interleukin 6 signal transducer 2 0
MIRT735689 ACVR1C activin A receptor type 1C 2 0
MIRT736080 SPOCK1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-548c-3p Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548c Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-548c-3p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (HepG2, Hep-394, Hep-SWX, Huh-7)
hsa-miR-548c-3p Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer tissue
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548c-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548c-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548c-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-548c-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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