miRTarBase - #MIRT102252


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pre-miRNA Information
pre-miRNA hsa-mir-548g   
Genomic Coordinates chr4: 147344629 - 147344717
Synonyms MIRN548G, hsa-mir-548g, MIR548G
Description Homo sapiens miR-548g stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548g-5p
Sequence 15| UGCAAAAGUAAUUGCAGUUUUUG |37
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 4 - 147344700 29233923 MiREDiBase
A-to-I 7 4 - 147344697 29233923 MiREDiBase
A-to-I 16 4 - 147344688 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1428532945 1 dbSNP
rs749197968 2 dbSNP
rs1271780804 3 dbSNP
rs375562730 4 dbSNP
rs1340837915 12 dbSNP
rs1222552086 20 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HBP1   
Synonyms -
Description HMG-box transcription factor 1
Transcript NM_012257   
Expression
Putative miRNA Targets on HBP1
3'UTR of HBP1
(miRNA target sites are highlighted)		 
>HBP1|NM_012257|3'UTR
   1 ACCAGGATGCTTATGTTCTTAAGTCTATATTTGCATATACATTGACTCTTGATGGAAAGACTTAAGAAGATCAAGGTCTC
  81 ACCATTTGTCCTCAATTCGTGTGACCATAAGATACTGATAGCATTGAGTCTTGAAATGATTTAATAATATGAGTGAGGAT
 161 TTGCTTTCTCCATTAGAGCATTAAGCTAAAACTATCAACATTTTAAACCAAATTGCCTTATTTTTCTTCCAAACTTCATA
 241 TATGTCTATCAGGTAATAATAGGCTTGAAAATTGATATCCTGTGGTGCTAAAGTACAGTAGAAAGAGAGGAGAAGTGTAT
 321 ACATGTTTTATTTTAAATTGTACGAAAGGGGAATTTAAAAAATATGTAACTGCTGTTTATACATTGGCTCCTTACTGCTT
 401 ATTAATCTGTATTGTACACATGATGAAATGAAGCAGAAGCTGGGAGTCGGCCTTTCCTCTAGTAACCACCACATGGCTCA
 481 GCATCTGTGCCAAACATAGGCGCTCCTAGTCTGGTCAGTGCCAAGAGGCTACCAGAACATGGGGCAGGTGGCTGGTGTTG
 561 GTGTCCCAGCCTAAGAGCCACCTGCTGCAGTTACCATGGCATGCTGAGTTGATGCACCAGGTGGCAGCAGCCATCCGTTA
 641 TTATTTCCAATGGAGACCTAGCCCAGGCCAAGGTAAAGTTAGTTAATAGCATTGGGATATAGTCACTGTAATGGTGCTAT
 721 TAACAAACAGTCAACACCATTGTATTTTTTAACTTCGTGTTCTGTATCTCCTCAGCCATGTATCTTAAATATATTTTGTC
 801 ATCATAATCTTTATGGTGGGGGCAGACTTTGCACTTACTGCAGTGCAACACTTGCACTTTAATTTTCCTCCAACTGTCTA
 881 AAATTAGAGCAAATACATTGGCAATACAGCTGCTTTTGCTCTGAGCTACAATCATGGCTTTTCATGTTACTTACCAAGTG
 961 GTGTTTCTGGTTAGGAATCACAGCTGTAAAATTGATTTCAGTTCATCACACTTCTTCATGATGTTGCCCCTAAATTTTGC
1041 ACACTATATTCTTGTATATTATTTCAAATAAATGGAAAAAAAAGTTGCTTATCTCTGAAAAAAAAAAAAAAAAAAAAAAA
1121 AAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUU---UGA-CGUUA-----AUGAAAACGu 5'
            |||   |:| |||||     |:||||||| 
Target 5' gcAAATACATTGGCAATACAGCTGCTTTTGCt 3'
 889 - 920 161.00 -13.50
2 
miRNA  3' guUUUUGAC-GUUAAUGAAAACGu 5'
            :| ::|| |  | | |||||| 
Target 5' atGATGTTGCCCCTAAATTTTGCa 3'
 1018 - 1041 121.00 -7.72
3 
miRNA  3' guuUUUGACGUUAAUGAAAAcgu 5'
             |||:|||  |||:||||   
Target 5' accAAATTGC-CTTATTTTTctt 3'
 207 - 228 119.00 -6.32
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
911613 344 ClinVar
358434 366 ClinVar
358435 449 ClinVar
358436 602 ClinVar
911614 618 ClinVar
911615 637 ClinVar
911616 660 ClinVar
911617 746 ClinVar
358437 808 ClinVar
908663 843 ClinVar
358438 975 ClinVar
358439 1088 ClinVar
358440 1089 ClinVar
COSN30148695 16 COSMIC
COSN30155969 49 COSMIC
COSN31540908 55 COSMIC
COSN30157727 70 COSMIC
COSN30132621 78 COSMIC
COSN30154518 81 COSMIC
COSN30539614 134 COSMIC
COSN31519578 134 COSMIC
COSN30539615 139 COSMIC
COSN31576319 148 COSMIC
COSN27901732 247 COSMIC
COSN31485796 247 COSMIC
COSN30176150 249 COSMIC
COSN31488250 275 COSMIC
COSN31547068 318 COSMIC
COSN31515346 345 COSMIC
COSN31481467 483 COSMIC
COSN31603248 718 COSMIC
COSN7919476 765 COSMIC
COSN26553478 902 COSMIC
COSN21453202 1040 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1176230094 4 dbSNP
rs761182181 7 dbSNP
rs575270872 10 dbSNP
rs1159172313 19 dbSNP
rs760187814 21 dbSNP
rs1384319631 24 dbSNP
rs769329259 28 dbSNP
rs1316131613 30 dbSNP
rs547734050 32 dbSNP
rs760018179 34 dbSNP
rs906880981 35 dbSNP
rs767877405 36 dbSNP
rs1001374263 37 dbSNP
rs1463038595 38 dbSNP
rs1320919449 44 dbSNP
rs752989307 49 dbSNP
rs987092102 54 dbSNP
rs1472441877 59 dbSNP
rs1235487368 60 dbSNP
rs908800575 60 dbSNP
rs1011398658 62 dbSNP
rs1477737867 64 dbSNP
rs1202598329 67 dbSNP
rs940154744 68 dbSNP
rs561139290 69 dbSNP
rs530266824 73 dbSNP
rs1289998120 75 dbSNP
rs550225636 77 dbSNP
rs966846011 80 dbSNP
rs1356321808 83 dbSNP
rs1291803271 89 dbSNP
rs1412138039 94 dbSNP
rs770526035 99 dbSNP
rs1351490604 100 dbSNP
rs948859334 108 dbSNP
rs1044367246 116 dbSNP
rs570071183 119 dbSNP
rs1351646152 120 dbSNP
rs1165619035 124 dbSNP
rs1404678253 125 dbSNP
rs1397096674 126 dbSNP
rs907251834 133 dbSNP
rs1437639635 141 dbSNP
rs1157775438 142 dbSNP
rs1411617025 142 dbSNP
rs1000038820 144 dbSNP
rs1250821099 144 dbSNP
rs1002830899 145 dbSNP
rs1179511344 147 dbSNP
rs1402306368 147 dbSNP
rs1056277387 148 dbSNP
rs746984593 150 dbSNP
rs892397863 151 dbSNP
rs1271746494 152 dbSNP
rs1009791925 154 dbSNP
rs1022152894 166 dbSNP
rs1436540914 174 dbSNP
rs1330180898 185 dbSNP
rs1305228082 191 dbSNP
rs1288149110 193 dbSNP
rs140869666 195 dbSNP
rs1041263171 196 dbSNP
rs562248212 199 dbSNP
rs996635341 208 dbSNP
rs191952814 213 dbSNP
rs1322399392 214 dbSNP
rs1207481690 215 dbSNP
rs1288333721 218 dbSNP
rs907598098 221 dbSNP
rs1410903911 233 dbSNP
rs954989032 241 dbSNP
rs1451158477 244 dbSNP
rs781036742 248 dbSNP
rs529549920 249 dbSNP
rs1045903251 254 dbSNP
rs908767852 255 dbSNP
rs1211078883 261 dbSNP
rs1465773599 264 dbSNP
rs1267866054 269 dbSNP
rs1456564176 272 dbSNP
rs774715082 273 dbSNP
rs974634233 275 dbSNP
rs1302164833 277 dbSNP
rs1366158552 279 dbSNP
rs571520604 283 dbSNP
rs1299957655 288 dbSNP
rs1435684536 289 dbSNP
rs1055630710 293 dbSNP
rs765212427 300 dbSNP
rs1359538583 305 dbSNP
rs1174856123 307 dbSNP
rs1412935089 307 dbSNP
rs1391446726 308 dbSNP
rs1405473560 313 dbSNP
rs1011349378 316 dbSNP
rs375479179 318 dbSNP
rs1041530723 323 dbSNP
rs772552151 323 dbSNP
rs1185295427 326 dbSNP
rs948812373 331 dbSNP
rs1484410307 332 dbSNP
rs534075932 344 dbSNP
rs554148267 345 dbSNP
rs1346044938 353 dbSNP
rs938656791 353 dbSNP
rs1229315949 360 dbSNP
rs1364552082 360 dbSNP
rs1445500121 364 dbSNP
rs773755170 366 dbSNP
rs1802028 367 dbSNP
rs1432453111 370 dbSNP
rs1336785949 374 dbSNP
rs111247485 375 dbSNP
rs1168672810 381 dbSNP
rs1428469988 384 dbSNP
rs892359660 384 dbSNP
rs1370862292 386 dbSNP
rs1241595606 391 dbSNP
rs573763819 400 dbSNP
rs1356217564 401 dbSNP
rs1257265413 403 dbSNP
rs1233991836 404 dbSNP
rs1484807365 408 dbSNP
rs1009517226 410 dbSNP
rs1206152323 414 dbSNP
rs71566719 416 dbSNP
rs1029235773 417 dbSNP
rs1341486292 417 dbSNP
rs761053124 419 dbSNP
rs144869808 421 dbSNP
rs903726551 423 dbSNP
rs996687555 430 dbSNP
rs1028044889 434 dbSNP
rs1352106384 436 dbSNP
rs955123981 442 dbSNP
rs556191560 443 dbSNP
rs147954001 449 dbSNP
rs751654417 450 dbSNP
rs1439380668 456 dbSNP
rs1164536325 461 dbSNP
rs753846764 463 dbSNP
rs544557530 465 dbSNP
rs1015286259 470 dbSNP
rs961921352 473 dbSNP
rs1185089051 477 dbSNP
rs1164657600 486 dbSNP
rs1474396735 488 dbSNP
rs1414681987 503 dbSNP
rs1183115200 512 dbSNP
rs1236855460 515 dbSNP
rs974389117 518 dbSNP
rs1473053746 534 dbSNP
rs1211769417 538 dbSNP
rs1488762469 540 dbSNP
rs920174050 545 dbSNP
rs1166476456 552 dbSNP
rs755241520 553 dbSNP
rs1231396191 559 dbSNP
rs1330892357 561 dbSNP
rs1420930278 565 dbSNP
rs928407669 565 dbSNP
rs936996365 569 dbSNP
rs1324942368 571 dbSNP
rs1386916863 573 dbSNP
rs564539024 577 dbSNP
rs1055413755 583 dbSNP
rs980253424 591 dbSNP
rs1391250134 595 dbSNP
rs1160430395 597 dbSNP
rs886061867 602 dbSNP
rs765487365 604 dbSNP
rs914259199 606 dbSNP
rs1398147739 609 dbSNP
rs1433790902 611 dbSNP
rs1252478609 612 dbSNP
rs762556812 614 dbSNP
rs183289135 618 dbSNP
rs938792917 622 dbSNP
rs533473434 624 dbSNP
rs913267653 630 dbSNP
rs551727433 637 dbSNP
rs1204395255 638 dbSNP
rs1043613478 641 dbSNP
rs902975377 642 dbSNP
rs1276186975 645 dbSNP
rs139428063 651 dbSNP
rs1329962709 656 dbSNP
rs1300675969 657 dbSNP
rs1040449537 658 dbSNP
rs932447330 665 dbSNP
rs1368039380 666 dbSNP
rs1049611446 670 dbSNP
rs6952928 671 dbSNP
rs530284324 674 dbSNP
rs1383281252 675 dbSNP
rs1296596701 676 dbSNP
rs1466776631 686 dbSNP
rs996160715 690 dbSNP
rs1028975136 691 dbSNP
rs543667847 692 dbSNP
rs887789551 697 dbSNP
rs563759284 700 dbSNP
rs1006438718 707 dbSNP
rs890863976 708 dbSNP
rs1280507715 709 dbSNP
rs1200644972 713 dbSNP
rs532499495 720 dbSNP
rs539124790 722 dbSNP
rs962230103 722 dbSNP
rs1365296603 723 dbSNP
rs1198532541 725 dbSNP
rs187030164 726 dbSNP
rs1277575022 730 dbSNP
rs566069137 731 dbSNP
rs1008014170 735 dbSNP
rs1325011712 736 dbSNP
rs757140171 736 dbSNP
rs1035429276 738 dbSNP
rs1396808582 739 dbSNP
rs958427593 741 dbSNP
rs1171842964 743 dbSNP
rs1431633360 744 dbSNP
rs1390882714 745 dbSNP
rs190095596 746 dbSNP
rs1474407892 747 dbSNP
rs1238965162 749 dbSNP
rs182338996 757 dbSNP
rs1485136301 768 dbSNP
rs1254870859 769 dbSNP
rs567466802 779 dbSNP
rs1206865392 781 dbSNP
rs1342194542 781 dbSNP
rs947054835 782 dbSNP
rs977361633 786 dbSNP
rs1338076422 788 dbSNP
rs1193708106 794 dbSNP
rs924554793 795 dbSNP
rs1374462186 799 dbSNP
rs1355231363 807 dbSNP
rs10699573 808 dbSNP
rs192948081 814 dbSNP
rs1355156032 816 dbSNP
rs1027209832 823 dbSNP
rs1408127330 835 dbSNP
rs1415952478 839 dbSNP
rs530897270 843 dbSNP
rs1474723203 855 dbSNP
rs1415420149 859 dbSNP
rs1183847504 861 dbSNP
rs1483203480 868 dbSNP
rs1231797727 869 dbSNP
rs1201904121 871 dbSNP
rs536406901 874 dbSNP
rs1292565635 877 dbSNP
rs781682808 882 dbSNP
rs980222657 888 dbSNP
rs1339034006 895 dbSNP
rs1035849823 897 dbSNP
rs1334559304 903 dbSNP
rs932023661 905 dbSNP
rs1230435797 914 dbSNP
rs1374405313 917 dbSNP
rs556088585 940 dbSNP
rs569879796 941 dbSNP
rs149977658 949 dbSNP
rs1440024081 950 dbSNP
rs1296312837 955 dbSNP
rs568858422 962 dbSNP
rs1351697023 969 dbSNP
rs960108609 972 dbSNP
rs1328433197 973 dbSNP
rs115287891 975 dbSNP
rs913312889 993 dbSNP
rs1406879726 1003 dbSNP
rs1472709002 1003 dbSNP
rs947378063 1006 dbSNP
rs1175126221 1008 dbSNP
rs778274629 1011 dbSNP
rs1246808587 1020 dbSNP
rs898096015 1031 dbSNP
rs367826914 1047 dbSNP
rs979187673 1050 dbSNP
rs925203343 1057 dbSNP
rs1348390072 1058 dbSNP
rs1271644076 1066 dbSNP
rs1003147034 1076 dbSNP
rs1035794232 1076 dbSNP
rs932583060 1077 dbSNP
rs886061868 1088 dbSNP
rs886061869 1089 dbSNP
rs1491187157 1090 dbSNP
rs958874260 1091 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 26959.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guuuuugacguuaaugAAAACGu 5'
                          |||||| 
Target 5' -----uugccccuaaaUUUUGCa 3'
 		1 - 18
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000222574.4 | 3UTR | CCCCUAAAUUUUGCACACUAUAUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000222574.4 | 3UTR | CCCCUAAAUUUUGCACACUAUAUUCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000222574.4 | 3UTR | CCCCUAAAUUUUGCACACUAUAUUCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000222574.4 | 3UTR | UUGCCCCUAAAUUUUGCACACUAUAUUCUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
249 hsa-miR-548g-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057504 CEP55 centrosomal protein 55 2 4
MIRT060829 CEP350 centrosomal protein 350 2 4
MIRT062719 MLEC malectin 2 4
MIRT064766 CCND2 cyclin D2 2 8
MIRT075336 SF3B3 splicing factor 3b subunit 3 2 2
MIRT080205 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT080236 SMAD4 SMAD family member 4 2 6
MIRT087395 AGFG1 ArfGAP with FG repeats 1 2 4
MIRT088228 GRAMD4 GRAM domain containing 4 2 2
MIRT089490 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 6
MIRT091222 USP13 ubiquitin specific peptidase 13 2 2
MIRT092959 CYP2U1 cytochrome P450 family 2 subfamily U member 1 2 4
MIRT094091 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 4
MIRT097469 PAPD4 poly(A) RNA polymerase D4, non-canonical 2 2
MIRT102252 HBP1 HMG-box transcription factor 1 2 4
MIRT105440 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT107286 FAM73B mitoguardin 2 2 2
MIRT113584 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT113886 KPNA6 karyopherin subunit alpha 6 2 6
MIRT126457 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT135023 ADSS adenylosuccinate synthase 2 6
MIRT139889 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT149702 LDLR low density lipoprotein receptor 2 2
MIRT163230 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT165198 GRAMD3 GRAM domain containing 2B 2 2
MIRT172169 FZD6 frizzled class receptor 6 2 8
MIRT177396 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT179427 TBRG1 transforming growth factor beta regulator 1 2 6
MIRT195617 FAM195A MAPK regulated corepressor interacting protein 2 2 6
MIRT208727 MED12L mediator complex subunit 12 like 2 6
MIRT211508 ELMOD2 ELMO domain containing 2 2 2
MIRT213434 MOB1B MOB kinase activator 1B 2 6
MIRT240121 NDRG1 N-myc downstream regulated 1 2 2
MIRT243102 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT247387 HCFC2 host cell factor C2 2 4
MIRT248057 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT249457 ZNF691 zinc finger protein 691 2 4
MIRT253421 EVI5L ecotropic viral integration site 5 like 2 2
MIRT254148 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT258906 LAPTM4B lysosomal protein transmembrane 4 beta 2 4
MIRT259391 SLC6A8 solute carrier family 6 member 8 2 4
MIRT266966 LRRC55 leucine rich repeat containing 55 2 4
MIRT279001 GMFB glia maturation factor beta 2 10
MIRT288802 KCNJ2 potassium voltage-gated channel subfamily J member 2 2 2
MIRT325678 ZNF367 zinc finger protein 367 2 2
MIRT330543 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 4
MIRT334269 RCC2 regulator of chromosome condensation 2 2 2
MIRT350225 PRNP prion protein 2 2
MIRT400510 SKIL SKI like proto-oncogene 2 10
MIRT405635 WBP4 WW domain binding protein 4 2 4
MIRT408651 QKI QKI, KH domain containing RNA binding 2 2
MIRT444161 ZNF701 zinc finger protein 701 2 2
MIRT444509 ZNF525 zinc finger protein 525 2 2
MIRT445209 CRYBG3 crystallin beta-gamma domain containing 3 2 2
MIRT446844 FOXP1 forkhead box P1 2 2
MIRT449026 ADRB1 adrenoceptor beta 1 2 2
MIRT450746 POLI DNA polymerase iota 2 4
MIRT450793 OTUD7A OTU deubiquitinase 7A 2 2
MIRT454916 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 12
MIRT455266 DDX39B DExD-box helicase 39B 2 10
MIRT455715 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT456098 MB21D1 Mab-21 domain containing 1 2 6
MIRT463635 YY1 YY1 transcription factor 2 8
MIRT463891 WNT7B Wnt family member 7B 2 2
MIRT466262 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 4
MIRT466820 STX6 syntaxin 6 2 6
MIRT466879 STX16 syntaxin 16 2 2
MIRT467524 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT468199 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT468633 SELT selenoprotein T 2 2
MIRT470367 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT470998 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471559 PATL1 PAT1 homolog 1, processing body mRNA decay factor 2 6
MIRT472277 NFIB nuclear factor I B 2 4
MIRT472758 MTMR6 myotubularin related protein 6 2 8
MIRT474719 KIF13A kinesin family member 13A 2 6
MIRT475869 H3F3C H3 histone family member 3C 2 10
MIRT475903 H3F3B H3 histone family member 3B 2 8
MIRT477350 EOGT EGF domain specific O-linked N-acetylglucosamine transferase 2 4
MIRT477486 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT478096 DLG5 discs large MAGUK scaffold protein 5 2 6
MIRT479805 CCNA2 cyclin A2 2 6
MIRT480813 BLCAP bladder cancer associated protein 2 10
MIRT481947 ANKRD11 ankyrin repeat domain 11 2 2
MIRT483060 EXT2 exostosin glycosyltransferase 2 2 6
MIRT484143 LRRC45 leucine rich repeat containing 45 2 4
MIRT484904 ZFYVE26 zinc finger FYVE-type containing 26 2 4
MIRT485080 SOX4 SRY-box 4 2 10
MIRT485639 DICER1 dicer 1, ribonuclease III 2 4
MIRT485798 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT486271 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT486740 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT487167 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 2 2
MIRT491642 PDRG1 p53 and DNA damage regulated 1 2 10
MIRT491934 WDR45B WD repeat domain 45B 2 8
MIRT492232 SLC48A1 solute carrier family 48 member 1 2 2
MIRT493089 MMGT1 membrane magnesium transporter 1 2 12
MIRT494479 BRWD3 bromodomain and WD repeat domain containing 3 2 2
MIRT494986 ROCK1 Rho associated coiled-coil containing protein kinase 1 2 2
MIRT495671 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT498467 PTBP2 polypyrimidine tract binding protein 2 2 10
MIRT499268 NBPF11 NBPF member 11 2 2
MIRT499855 SVOP SV2 related protein 2 12
MIRT500307 ZNF622 zinc finger protein 622 2 8
MIRT500640 TUBB2A tubulin beta 2A class IIa 2 8
MIRT501222 SEMA4C semaphorin 4C 2 6
MIRT501526 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 8
MIRT501569 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502430 G3BP2 G3BP stress granule assembly factor 2 2 10
MIRT502967 CCNL1 cyclin L1 2 8
MIRT503470 ZNF154 zinc finger protein 154 2 6
MIRT504572 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit 2 4
MIRT504956 ZNRF2 zinc and ring finger 2 2 6
MIRT505206 UBN2 ubinuclein 2 2 8
MIRT505238 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT507570 DEK DEK proto-oncogene 2 2
MIRT509412 MCM7 minichromosome maintenance complex component 7 2 6
MIRT510715 SPG20 spartin 2 6
MIRT510859 RAN RAN, member RAS oncogene family 2 8
MIRT510914 PSMA2 proteasome subunit alpha 2 2 4
MIRT510944 PPTC7 PTC7 protein phosphatase homolog 2 8
MIRT511072 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 2 4
MIRT511213 LNPEP leucyl and cystinyl aminopeptidase 2 4
MIRT511959 ELOVL5 ELOVL fatty acid elongase 5 2 6
MIRT512123 CREBL2 cAMP responsive element binding protein like 2 2 8
MIRT513686 RNF111 ring finger protein 111 2 2
MIRT513896 GRB10 growth factor receptor bound protein 10 2 6
MIRT516305 F8A2 coagulation factor VIII associated 2 2 2
MIRT516331 F8A3 coagulation factor VIII associated 3 2 2
MIRT517521 ITM2C integral membrane protein 2C 2 6
MIRT517930 IMPA1 inositol monophosphatase 1 2 2
MIRT521368 RNF11 ring finger protein 11 2 6
MIRT525192 ZNF93 zinc finger protein 93 2 2
MIRT527216 CCNL2 cyclin L2 2 2
MIRT527835 NUPL1 nucleoporin 58 2 2
MIRT529433 MALT1 MALT1 paracaspase 2 2
MIRT530166 C11orf44 chromosome 11 open reading frame 44 2 4
MIRT530515 C4orf32 family with sequence similarity 241 member A 2 4
MIRT532372 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT533855 TEAD1 TEA domain transcription factor 1 2 2
MIRT534750 RAVER2 ribonucleoprotein, PTB binding 2 2 4
MIRT534795 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT538602 CDK19 cyclin dependent kinase 19 2 2
MIRT539247 ANKRD50 ankyrin repeat domain 50 2 2
MIRT539467 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT543100 TNFRSF11A TNF receptor superfamily member 11a 2 2
MIRT543897 ESYT1 extended synaptotagmin 1 2 2
MIRT544980 MFF mitochondrial fission factor 2 4
MIRT545794 ZNF772 zinc finger protein 772 2 4
MIRT546009 WDR26 WD repeat domain 26 2 4
MIRT546378 STOX2 storkhead box 2 2 4
MIRT546681 RORA RAR related orphan receptor A 2 4
MIRT546947 SFTPA1 surfactant protein A1 2 2
MIRT547034 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT547397 MKX mohawk homeobox 2 2
MIRT547470 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT547501 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT548077 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548500 E2F8 E2F transcription factor 8 2 2
MIRT548883 CHEK2 checkpoint kinase 2 2 4
MIRT549063 CALM1 calmodulin 1 2 2
MIRT549166 BMP3 bone morphogenetic protein 3 2 2
MIRT549310 ARHGAP12 Rho GTPase activating protein 12 2 4
MIRT549345 ARC activity regulated cytoskeleton associated protein 2 2
MIRT549475 ACBD5 acyl-CoA binding domain containing 5 2 2
MIRT549678 ZNF598 zinc finger protein 598 2 2
MIRT550209 MAVS mitochondrial antiviral signaling protein 2 4
MIRT550356 INCENP inner centromere protein 2 4
MIRT550531 MYZAP myocardial zonula adherens protein 2 2
MIRT551156 ZNF678 zinc finger protein 678 2 2
MIRT552311 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT552880 WASL Wiskott-Aldrich syndrome like 2 4
MIRT553383 TRIM33 tripartite motif containing 33 2 2
MIRT554453 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT554868 RCAN2 regulator of calcineurin 2 2 2
MIRT556022 MYBL1 MYB proto-oncogene like 1 2 2
MIRT556175 MCC mutated in colorectal cancers 2 2
MIRT556238 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT556878 ITGA2 integrin subunit alpha 2 2 2
MIRT557575 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT557690 GATA6 GATA binding protein 6 2 2
MIRT557906 FBXO8 F-box protein 8 2 2
MIRT558132 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) 2 2
MIRT558481 DBN1 drebrin 1 2 2
MIRT558744 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT558760 CFL2 cofilin 2 2 2
MIRT559122 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT559406 GDNF glial cell derived neurotrophic factor 2 4
MIRT559476 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT559677 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT560049 ZNF680 zinc finger protein 680 2 2
MIRT560643 ZNF107 zinc finger protein 107 2 2
MIRT562581 CBX3 chromobox 3 2 2
MIRT564188 CLVS2 clavesin 2 2 2
MIRT564530 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT564540 CCDC80 coiled-coil domain containing 80 2 2
MIRT565290 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT565315 TMEM41A transmembrane protein 41A 2 2
MIRT565950 RRAGD Ras related GTP binding D 2 2
MIRT566633 NFYA nuclear transcription factor Y subunit alpha 2 4
MIRT566818 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT567529 FGFR1OP FGFR1 oncogene partner 2 2
MIRT568631 ACVR2A activin A receptor type 2A 2 2
MIRT572141 DESI1 desumoylating isopeptidase 1 2 2
MIRT616029 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 4
MIRT620048 ODF4 outer dense fiber of sperm tails 4 2 2
MIRT620531 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621878 TAOK3 TAO kinase 3 2 2
MIRT623242 MLLT6 MLLT6, PHD finger containing 2 2
MIRT623994 FAM104A family with sequence similarity 104 member A 2 2
MIRT624301 COL12A1 collagen type XII alpha 1 chain 2 2
MIRT626283 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT627771 RAB30 RAB30, member RAS oncogene family 2 2
MIRT641139 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT644587 SPOP speckle type BTB/POZ protein 2 2
MIRT644820 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT645971 NHLRC2 NHL repeat containing 2 2 2
MIRT646171 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT646496 ZNF429 zinc finger protein 429 2 2
MIRT647834 RAB23 RAB23, member RAS oncogene family 2 2
MIRT648463 CCDC127 coiled-coil domain containing 127 2 2
MIRT657281 HRK harakiri, BCL2 interacting protein 2 2
MIRT658644 ENAH ENAH, actin regulator 2 2
MIRT658677 EMP2 epithelial membrane protein 2 2 2
MIRT665229 ZZZ3 zinc finger ZZ-type containing 3 2 2
MIRT669277 C19orf44 chromosome 19 open reading frame 44 2 2
MIRT676048 AUTS8 Autism, susceptibility to, 8 2 2
MIRT681484 DIP2A disco interacting protein 2 homolog A 2 2
MIRT681555 UBXN2A UBX domain protein 2A 2 2
MIRT683143 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 2 2
MIRT688535 DCAF7 DDB1 and CUL4 associated factor 7 2 2
MIRT689429 CYB561 cytochrome b561 2 2
MIRT689535 KIAA0513 KIAA0513 2 2
MIRT689895 SOD2 superoxide dismutase 2 2 2
MIRT695990 SNX19 sorting nexin 19 2 2
MIRT697781 UBXN7 UBX domain protein 7 2 2
MIRT702915 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT703145 GPR137C G protein-coupled receptor 137C 2 2
MIRT703525 FKBP15 FK506 binding protein 15 2 2
MIRT704537 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 2 2
MIRT704998 CAMSAP1 calmodulin regulated spectrin associated protein 1 2 2
MIRT705722 AMMECR1L AMMECR1 like 2 2
MIRT707121 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT707452 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707776 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT707889 SLC30A7 solute carrier family 30 member 7 2 2
MIRT720532 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT723860 CD209 CD209 molecule 2 2
MIRT725350 MUC21 mucin 21, cell surface associated 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548g Cisplatin 5460033 NSC119875 approved resistant cell line (OE19)
hsa-mir-548g Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)

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