| pre-miRNA Information | |
|---|---|
| pre-miRNA | hsa-mir-548am |
| Genomic Coordinates | chrX: 16627012 - 16627085 |
| Description | Homo sapiens miR-548am stem-loop |
| Comment | None |
| RNA Secondary Structure |  |
| Mature miRNA Information | |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Mature miRNA | hsa-miR-548am-5p | ||||||||||||||||||||||||||||
| Sequence | 10| AAAAGUAAUUGCGGUUUUUGCC |31 | ||||||||||||||||||||||||||||
| Evidence | Not_experimental | ||||||||||||||||||||||||||||
| Experiments | |||||||||||||||||||||||||||||
| Editing Events in miRNAs |
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| SNPs in miRNA |
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| Putative Targets | |||||||||||||||||||||||||||||
| miRNA Expression profile | |
|---|---|
| Human miRNA Tissue Atlas | |
| miRNAs in Extracellular Vesicles |
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| Circulating MicroRNA Expression Profiling | |
| Gene Information | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene Symbol | PEG10 | ||||||||||||||||||||
| Synonyms | EDR, HB-1, MEF3L, Mar2, Mart2, RGAG3, RTL2, SIRH1 | ||||||||||||||||||||
| Description | paternally expressed 10 | ||||||||||||||||||||
| Transcript | NM_001040152 | ||||||||||||||||||||
| Other Transcripts | NM_001172437 , NM_001172438 , NM_001184961 , NM_001184962 , NM_015068 | ||||||||||||||||||||
| Expression | |||||||||||||||||||||
| Putative miRNA Targets on PEG10 | |||||||||||||||||||||
| 3'UTR of PEG10 (miRNA target sites are highlighted) |
>PEG10|NM_001040152|3'UTR 1 AGGGACCTTCAGCGACCGGGCCAGAAATAATAAGGTCCCCACAAGATGATGCCTCATCTCCACACTTGCAAGTGATGCTC 81 CAGATTCATCTTCCGGGCAGACACACCCTGTTCGTCCGAGCCATGATCGATTCTGGTGCTTCTGGCAACTTCATTGATCA 161 CGAATATGTTGCTCAAAATGGAATTCCTCTAAGAATCAAGGACTGGCCAATACTTGTGGAAGCAATTGATGGGCGCCCCA 241 TAGCATCGGGCCCAGTTGTCCACGAAACTCACGACCTGATAGTTGACCTGGGAGATCACCGAGAGGTGCTGTCATTTGAT 321 GTGACTCAGTCTCCATTCTTCCCTGTCGTCCTAGGGGTTCGCTGGCTGAGCACACATGATCCCAATATCACATGGAGCAC 401 TCGATCTATCGTCTTTGATTCTGAATACTGCCGCTACCACTGCCGGATGTATTCTCCAATACCACCATCGCTCCCACCAC 481 CAGCACCACAACCGCCACTCTATTATCCAGTAGATGGATACAGAGTTTACCAACCAGTGAGGTATTACTATGTCCAGAAT 561 GTGTACACTCCAGTAGATGAGCACGTCTACCCAGATCACCGCCTGGTTGACCCTCACATAGAAATGATACCTGGAGCACA 641 CAGTATTCCCAGTGGACATGTGTATTCACTGTCCGAACCTGAAATGGCAGCTCTTCGAGATTTTGTGGCAAGAAATGTAA 721 AAGATGGGCTAATTACTCCAACGATTGCACCTAATGGAGCCCAAGTTCTCCAGGTGAAGAGGGGGTGGAAACTGCAAGTT 801 TCTTATGATTGCCGAGCTCCAAACAATTTTACTATCCAGAATCAGTATCCTCGCCTATCTATTCCAAATTTAGAAGACCA 881 AGCACACCTGGCAACGTACACTGAATTCGTACCTCAAATACCTGGATACCAAACATACCCCACATATGCCGCGTACCCGA 961 CCTACCCAGTAGGATTCGCCTGGTACCCAGTGGGACGAGACGGACAAGGAAGATCACTATATGTACCTGTGATGATCACT 1041 TGGAATCCACACTGGTACCGCCAGCCTCCGGTACCACAGTACCCGCCGCCACAGCCGCCGCCTCCACCACCACCACCGCC 1121 GCCGCCTCCATCTTACAGTACCCTGTAAATACCTGTCATGTCCTTCAGGATCTCTGCCCTCAAAATTTATTCCTGTTCAG 1201 CTTCTCAATCAGTGACTGTGTGCTAAATTTTAGGCTACTGTATCTTCAGGCCACCTGAGGCACATCCTCTCTGAAACGGC 1281 TATGGAAGGTTAGGGCCACTCTGGACTGGCACACATCCTAAAGCACCAAAAGACCTTCAACATTTTCTGAGAGCAACAGA 1361 GTATTTGCCAATAAATGATCTCTCATTTTTCCACCTTGACTGCCAATCTAACTAAAATAATTAATAAGTTTACTTTCCAG 1441 CCAGTCCTGGAAGTCTGGGTTTTACCTGCCAAAACCTCCATCACCATCTAAATTATAGGCTGCCAAATTTGCTGTTTAAC 1521 ATTTACAGAGAAGCTGATACAAACGCAGGAAATGCTGATTTCTTTATGGAGGGGGAGACGAGGAGGAGGAGGACATGACT 1601 TTTCTTGCGGTTTCGGTACCCTCTTTTTAAATCACTGGAGGACTGAGGCCTTATTAAGGAAGCCAAAATTATCGGTGCAG 1681 TGTGGAAAGGCTTCCGTGATCCTCTCGCTGCACCCTTAGAAACTTCACCGTCTTCAAACTCCATTTCCATGGTTCTGTTA 1761 ATTCTCAAGGAGCAGCAACTCGACTGGTTCTCCCAGGAGCAGGAAAAACCCTTGTGACATGAAACATCTCAGGCCTGAAA 1841 AGAAAGTGCTCTCTCAGATGGACTCTTGCATGTTAAGACTATGTCTTCACATCATGGTGCAAATCACATGTACCCAATGA 1921 CTCCGGCTTTGACACAACACCTTACCATCATCATGCCATGATGGCTTCCACAAAGCATTAAACCTGGTAACCAGAGATTA 2001 CTGGTGGCTCCAGCGTTGTTAGATGTTCATGAAATGTGACCACCTCTCAATCACCTTTGAGGGCTAAAGAGTAGCACATC 2081 AAAAGGACTCCAAAATCCCATACCCAACTCTTAAGAGATTTGTCCTGGTACTTCAGAAAGAATTTTCATGAGTGTTCTTA 2161 ATTGGCTGGAAAAGCACCAGCTGACGTTTTGGAAGAATCTATCCATGTGTCTGCCTCCATATGCATCTGGGCATTTCATC 2241 TTCAGTCCCCTCATTAGACTGTAGCATTAGGATGTGTGGAGAGAGGAGAAATGATTTAGCACCCAGATTCACACTCCTAT 2321 GCCTGGAAGGGGGACATCTTTGAAGAAGAGGAATTAGGGCTGTGGACACTGTCTTGAGGATGTGGACTTCCTTAGTGAGC 2401 TCCACATTACTTGATGGTAACCACTTCAAAAGGATCAGAATCCACGTAATGAAAAAGGTCCCTCTAGAGGATGGAGCTGA 2481 TGTGAAGCTGCCAATGGATGAAAAGCCTCAGAAAGCAACTCAAAGGACTCAAAGCAACGGACAACACAAGAGTTGTCTTC 2561 AGCCCAGTGACACCTCTGATGTCCCCTGGAAGCTTTGTGCTAACCTGGGACTGCCTGACTTCCTTTAGCCTGGTCCCTTG 2641 CTACTACCTTGAACTGTTTTATCTAACCTCTCTTTTTCTGTTTAATTCTTTGCTACTGCCATTGACCCTGCTGCAGGATT 2721 TGTGTCATTTTCCTGCCTGGTTGCTGAGACTCCATTTTGCTGCCACACACAGAGATGTAAGAGGCAGGCTTTAATTGCCA 2801 AAGCACAGTTTGAGCAGTAGAAAACAACATGGTGTATATCTCAAATTGCCTGACATGAAGAGGAGTCTAACGGTGAAGTT 2881 TCACTTTTCATCAGCATCATCTTTCACATGTTCATTATCATCTGCTCTTATTCTTGCATGTTTAAACACTTAAAATTTTT 2961 AGTATAATTTTTAGTGTGTTTTGAAGTGGTGACTAGGCTTTCAAAAACTTCCATTGAATTACAAAGCACTATCCAGTTCT 3041 TATTGTTAAACTAAGTAAAAATGATAAGTAACATAGTGTAAAATATTCCTTTACTGTGAACTTCTTACAATGCTGTGAAT 3121 GAGAGGCTCCTCAGAACTGGAGCATTTGTATAATAATTCATCCTGTTCATCTTCAATTTTAACATCATATATAATTTCAA 3201 TTCTATCAATTGGGCCTTTAAAAATCATATAAAAGGATATAAAATTTGAAAAGAGAAACCTAATTGGCTATTTAATCCAA 3281 AACAACTTTTTTTTTCCTTCAATGGAATCAGAAAGCTTGTCAATCACTCATGTGTTTTAGAGTAATTACTTTTAAAATGG 3361 TGCATTTGTGCTTCTGAACTATTTTGAAGAGTCACTTCTGTTTACCTCAAGTATCAATTCATCCTCCATACATTTGAATT 3441 CAAGTTGTTTTTTTGTCAAATTTACAGTTGTCAATTGATCTTCAAGCTGCAGGGTGCCTAGAAATGGGCCGTTGTCTGTA 3521 GCCCTGGCATGTGCACACGGACATTTGCCACCACTGCAAGCAAAAGTCTGGAGAAGTTCACCAACGACAAGAACGATTAG 3601 GGAAAATATGCTGCTGTGGGTTAACAACTCAGAAAGTCCCTGATCCACATTTGGCTGTTTACTAAAGCTTGTGATTAACT 3681 TTTTGGCAGTGTGTACTATGCTCTATTGCTATATATGCTATCTATAAATGTAGATGTTAAGGATAAGTAATTCTAAATTT 3761 ATTATTCTATAGTTTTGAAGTTTGGTTAAGTTTCCTTTCACTCAATTGATTTATTTTGTTGTTAATCAAATTTATGTTAA 3841 TTGGATCCTTTAAATTTTTTTTGGCATTTTCCAACAAAAATGGCTTTATTCATAAGAAAGGAAAAAAATCAATGGAATTT 3921 GATATCTAAAGAAGTTAGAAAGGGAGCAAAATAAAAAACATAAAGGAGATAGATGAATTAGTAAGCAAATCAGTAGTCGA 4001 GTTTTTCAAACTGGCAAAATTAATTAATTGACTTTTAGCCCAAATTTACATTGTTAATTAAATCAAGAAGGAAGAAGATC 4081 TAAGAGCTCCCATTGATAGGCAAGCCTAGAGAGAACTAGCTAAATTTATCATGCTAGGATATTGAAACACAGAAAGTTTA 4161 CATACATTTATGAAGGGTCAATTTAGTTTGGACAGTGAGGTATTTGTCTTAGTGGAAAAAAGGAGAATTAGTCTGATCAA 4241 ATCGTGAAGTAATACAGTGAACTTGCAGGTGCACAAAATAAGAGGGCCACATCTATATGGTGCAGTCTGGAATTCTGTTT 4321 AAGTTTGTAGGTACCTCTTGGACTTCTGAATTGATCCAGTTGTCATCCACCACAGACATCTCACATCAGATACAGACAGT 4401 TCCAAGATTGACAACAGAGAACAACCTGCTGGAAAGACCTGGGCAGAAATGGAGAGCCCTGCGGGAACCATGCTACATTT 4481 TCATCTAAAGAGAGAATGCACATCTGATGAGACTGAAAGTTCTTTGTTGTTTTAGATTGTAGAATGGTATTGAATTGGTC 4561 TGTGGAAAATTGCATTGCTTTTATTTCTTTGTGTAATCAAGTTTAAGTAATAGGGGATATATAATCATAAGCATTTTAGG 4641 GTGGGAGGGACTATTAAGTAATTTTAAGTGGGTGGGGTTATTTAGAATGTTAGAATAATATTATGTATTAGATATCGCTA 4721 TAAGTGGACATGCGTACTTACTTGTAACCCTTTACCCTATAATTGCTATCCTTAAAGATTTCAAATAAACTCGGAGGGAA 4801 CTGCAGGGAGACCAACTTATTTAGAGCGAATTGGACATGGATAAAAACCCCAGTGGGAGAAAGTTCAAAGGTGATTAGAT 4881 TAATAATTTAATAGAGGATGAGTGACCTCTGATAAATTACTGCTAGAATGAACTTGTCAATGATGGATGGTAAATTTTCA 4961 TGGAAGTTATAAAAGTGATAAATAAAAACCCTTGCTTTTACCCCTGTCAGTAGCCCTCCTCCTACCACTGAACCCCATTG 5041 CCCCTACCCCTCCTTCTAACTTTATTGCTGTATTCTCTTCACTCTATATTTCTCTCTATTTGCTAATATTGCATTGCTGT 5121 TACAATAAAAATTCAATAAAGATTTAGTGGTTAAGTGCAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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| miRNA-target interactions (Predicted by miRanda) |
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| DRVs in gene 3'UTRs | |||||||||||||||||||||
| SNPs in gene 3'UTRs | |||||||||||||||||||||
| Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
|---|---|---|---|---|---|---|---|
| miRNA:Target | ---- | ||||||
| Validation Method |
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| Conditions | HEK293 | ||||||
| Location of target site | 3'UTR | ||||||
| Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
| Original Description (Extracted from the article) |
...
PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection
... - Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell. |
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| miRNA-target interactions (Provided by authors) |
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| Article |
- Hafner M; Landthaler M; Burger L; Khorshid et al. - Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
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| Experimental Support 2 for Functional miRNA-Target Interaction | |||||||
|---|---|---|---|---|---|---|---|
| miRNA:Target | ---- | ||||||
| Validation Method |
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| Conditions | HEK293 | ||||||
| Disease | 23089.0 | ||||||
| Location of target site | 3'UTR | ||||||
| Tools used in this research | TargetScan , miRTarCLIP , Piranha | ||||||
| Original Description (Extracted from the article) |
...
"PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1
... - Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods. |
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| miRNA-target interactions (Provided by authors) |
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| Article |
- Kishore S; Jaskiewicz L; Burger L; Hausser et al. - Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
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| Experimental Support 3 for Functional miRNA-Target Interaction | |
|---|---|
| miRNA:Target | ---- |
| Validation Method |
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| Conditions | TZM-bl |
| Location of target site | 3'UTR |
| Tools used in this research | TargetScan , miRTarCLIP , Piranha |
| Original Description (Extracted from the article) |
...
PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL
... - Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio. |
| Article |
- Whisnant AW; Bogerd HP; Flores O; Ho P; et al. - mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
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| CLIP-seq Support 1 for dataset GSM545216 | |
|---|---|
| Method / RBP | PAR-CLIP / AGO2 |
| Cell line / Condition | HEK293 / miR-124 transfection |
| Location of target site | ENST00000482108.1 | 3UTR | UAAUUACUUUUAAAAUGGUGCAUUUG |
| Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
| Article / Accession Series | PMID: 20371350 / GSE21578 |
| CLIP-seq Viewer | Link |
| CLIP-seq Support 2 for dataset GSM714644 | |
|---|---|
| Method / RBP | PAR-CLIP / AGO2 |
| Cell line / Condition | HEK293 / completeT1, repA |
| Location of target site | ENST00000482108.1 | 3UTR | UAAUUACUUUUAAAAUGGUGCAUUUG |
| Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
| Article / Accession Series | PMID: 21572407 / GSE28865 |
| CLIP-seq Viewer | Link |
| CLIP-seq Support 3 for dataset GSM1462574 | |
|---|---|
| Method / RBP | PAR-CLIP / AGO2 |
| Cell line / Condition | TZM-bl / TZM-bl ami BaL |
| Location of target site | ENST00000482108.1 | 3UTR | UAAUUACUUUUAAAAUGGUGCAUUUG |
| Tools used in this analysis | TargetScan, miRTarCLIP, and Piranha |
| Article / Accession Series | PMID: 23592263 / GSE59944 |
| CLIP-seq Viewer | Link |
| MiRNA-Target Expression Profile | |||||||
|---|---|---|---|---|---|---|---|
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| MiRNA-Target Expression Profile (TCGA) | |||||||
|---|---|---|---|---|---|---|---|
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184 hsa-miR-548am-5p Target Genes:
Functional analysis:
ID |
Target | Description | Validation methods |
 |
 |
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| Strong evidence | Less strong evidence | |||||||||||
 |
 |
 |
 |
 |
 |
 |
 |
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| MIRT057132 | DDIT4 | DNA damage inducible transcript 4 |  |
|
2 | 4 | ||||||
| MIRT063379 | ETNK1 | ethanolamine kinase 1 | |
|
2 | 2 | ||||||
| MIRT072501 | RAB8B | RAB8B, member RAS oncogene family | |
|
2 | 2 | ||||||
| MIRT082193 | ACTN4 | actinin alpha 4 | |
|
2 | 6 | ||||||
| MIRT083043 | PTBP1 | polypyrimidine tract binding protein 1 | |
|
2 | 2 | ||||||
| MIRT085196 | SLC5A3 | solute carrier family 5 member 3 | |
|
2 | 4 | ||||||
| MIRT088913 | FOXN2 | forkhead box N2 | |
|
2 | 4 | ||||||
| MIRT089506 | MTHFD2 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase | |
|
2 | 6 | ||||||
| MIRT092047 | ABHD5 | abhydrolase domain containing 5 | |
|
2 | 2 | ||||||
| MIRT094692 | FEM1C | fem-1 homolog C | |
|
2 | 2 | ||||||
| MIRT095403 | UBE2D2 | ubiquitin conjugating enzyme E2 D2 | |
|
2 | 2 | ||||||
| MIRT096509 | BRIX1 | BRX1, biogenesis of ribosomes | |
|
2 | 2 | ||||||
| MIRT101303 | FAM135A | family with sequence similarity 135 member A | |
|
2 | 2 | ||||||
| MIRT103366 | CBX3 | chromobox 3 | |
|
2 | 2 | ||||||
| MIRT103883 | FOXK1 | forkhead box K1 | |
|
2 | 2 | ||||||
| MIRT104343 | CLDN12 | claudin 12 | |
|
2 | 2 | ||||||
| MIRT104508 | PEG10 | paternally expressed 10 | |
|
2 | 6 | ||||||
| MIRT111808 | MPZL1 | myelin protein zero like 1 | |
|
2 | 2 | ||||||
| MIRT177246 | BMI1 | BMI1 proto-oncogene, polycomb ring finger | |
|
2 | 2 | ||||||
| MIRT177281 | COMMD3-BMI1 | COMMD3-BMI1 readthrough | |
|
2 | 2 | ||||||
| MIRT177633 | UBE2D1 | ubiquitin conjugating enzyme E2 D1 | |
|
2 | 6 | ||||||
| MIRT178049 | SAMD8 | sterile alpha motif domain containing 8 | |
|
2 | 2 | ||||||
| MIRT179109 | PAFAH1B2 | platelet activating factor acetylhydrolase 1b catalytic subunit 2 | |
|
2 | 6 | ||||||
| MIRT179594 | CAPZA1 | capping actin protein of muscle Z-line alpha subunit 1 | |
|
2 | 6 | ||||||
| MIRT195307 | LEPROT | leptin receptor overlapping transcript | |
|
2 | 2 | ||||||
| MIRT203152 | BACH1 | BTB domain and CNC homolog 1 | |
|
2 | 2 | ||||||
| MIRT208437 | ZBTB38 | zinc finger and BTB domain containing 38 | |
|
2 | 2 | ||||||
| MIRT214585 | SMAD5 | SMAD family member 5 | |
|
2 | 4 | ||||||
| MIRT216112 | IL6ST | interleukin 6 signal transducer | |
|
2 | 2 | ||||||
| MIRT216363 | CCNB1 | cyclin B1 | |
|
2 | 4 | ||||||
| MIRT220059 | MDFIC | MyoD family inhibitor domain containing | |
|
2 | 2 | ||||||
| MIRT226737 | ANP32B | acidic nuclear phosphoprotein 32 family member B | |
|
2 | 4 | ||||||
| MIRT227706 | TBC1D13 | TBC1 domain family member 13 | |
|
2 | 2 | ||||||
| MIRT230079 | SH3BGRL | SH3 domain binding glutamate rich protein like | |
|
2 | 2 | ||||||
| MIRT248644 | HMGN2 | high mobility group nucleosomal binding domain 2 | |
|
2 | 4 | ||||||
| MIRT254799 | XRCC6 | X-ray repair cross complementing 6 | |
|
2 | 6 | ||||||
| MIRT264388 | YAP1 | Yes associated protein 1 | |
|
2 | 2 | ||||||
| MIRT266982 | LRRC55 | leucine rich repeat containing 55 | |
|
2 | 4 | ||||||
| MIRT273957 | SPRYD4 | SPRY domain containing 4 | |
|
2 | 2 | ||||||
| MIRT281809 | MAP2K1 | mitogen-activated protein kinase kinase 1 | |
|
2 | 2 | ||||||
| MIRT293262 | DR1 | down-regulator of transcription 1 | |
|
2 | 2 | ||||||
| MIRT297105 | RGPD4 | RANBP2-like and GRIP domain containing 4 | |
|
2 | 2 | ||||||
| MIRT308178 | PDE12 | phosphodiesterase 12 | |
|
2 | 2 | ||||||
| MIRT309022 | USP53 | ubiquitin specific peptidase 53 | |
|
2 | 2 | ||||||
| MIRT311477 | PRRC1 | proline rich coiled-coil 1 | |
|
2 | 2 | ||||||
| MIRT312595 | G3BP1 | G3BP stress granule assembly factor 1 | |
|
2 | 4 | ||||||
| MIRT328137 | ZNF711 | zinc finger protein 711 | |
|
2 | 2 | ||||||
| MIRT329321 | FAM53C | family with sequence similarity 53 member C | |
|
2 | 2 | ||||||
| MIRT334649 | NEK7 | NIMA related kinase 7 | |
|
2 | 2 | ||||||
| MIRT340680 | THRAP3 | thyroid hormone receptor associated protein 3 | |
|
2 | 2 | ||||||
| MIRT378865 | ITGB8 | integrin subunit beta 8 | |
|
2 | 2 | ||||||
| MIRT395798 | SPCS3 | signal peptidase complex subunit 3 | |
|
2 | 2 | ||||||
| MIRT405648 | WBP4 | WW domain binding protein 4 | |
|
2 | 4 | ||||||
| MIRT408294 | GRPEL2 | GrpE like 2, mitochondrial | |
|
2 | 2 | ||||||
| MIRT442112 | ZNRF2 | zinc and ring finger 2 | |
|
2 | 8 | ||||||
| MIRT442855 | GTF2H5 | general transcription factor IIH subunit 5 | |
|
2 | 2 | ||||||
| MIRT443131 | VLDLR | very low density lipoprotein receptor | |
|
2 | 2 | ||||||
| MIRT443162 | ZDHHC21 | zinc finger DHHC-type containing 21 | |
|
2 | 2 | ||||||
| MIRT443313 | PRPS1L1 | phosphoribosyl pyrophosphate synthetase 1-like 1 | |
|
2 | 2 | ||||||
| MIRT445095 | ZNF207 | zinc finger protein 207 | |
|
2 | 2 | ||||||
| MIRT445399 | PTCHD1 | patched domain containing 1 | |
|
2 | 4 | ||||||
| MIRT447085 | MCC | mutated in colorectal cancers | |
|
2 | 2 | ||||||
| MIRT447315 | ZNF562 | zinc finger protein 562 | |
|
2 | 2 | ||||||
| MIRT447528 | MRPS5 | mitochondrial ribosomal protein S5 | |
|
2 | 2 | ||||||
| MIRT449526 | TM6SF1 | transmembrane 6 superfamily member 1 | |
|
2 | 2 | ||||||
| MIRT449917 | C11orf34 | placenta expressed transcript 1 | |
1 | 2 | |||||||
| MIRT450566 | SHFM1 | SEM1, 26S proteasome complex subunit | |
|
2 | 2 | ||||||
| MIRT450734 | PVRL3 | nectin cell adhesion molecule 3 | |
|
2 | 2 | ||||||
| MIRT454938 | ANKEF1 | ankyrin repeat and EF-hand domain containing 1 | |
|
2 | 12 | ||||||
| MIRT455907 | KIF2C | kinesin family member 2C | |
|
2 | 2 | ||||||
| MIRT463747 | YWHAE | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon | |
|
2 | 8 | ||||||
| MIRT471197 | PHB2 | prohibitin 2 | |
|
2 | 2 | ||||||
| MIRT472779 | MTMR6 | myotubularin related protein 6 | |
|
2 | 8 | ||||||
| MIRT474472 | KLHL11 | kelch like family member 11 | |
|
2 | 8 | ||||||
| MIRT476000 | GTPBP2 | GTP binding protein 2 | |
|
2 | 2 | ||||||
| MIRT482291 | AGO2 | argonaute 2, RISC catalytic component | |
|
2 | 4 | ||||||
| MIRT485873 | ALG9 | ALG9, alpha-1,2-mannosyltransferase | |
|
2 | 2 | ||||||
| MIRT486207 | ERH | ERH, mRNA splicing and mitosis factor | |
|
2 | 4 | ||||||
| MIRT488624 | FAM3C | family with sequence similarity 3 member C | |
|
2 | 6 | ||||||
| MIRT489999 | DDB1 | damage specific DNA binding protein 1 | |
|
2 | 2 | ||||||
| MIRT493491 | IPMK | inositol polyphosphate multikinase | |
|
2 | 2 | ||||||
| MIRT494295 | CEP120 | centrosomal protein 120 | |
|
2 | 2 | ||||||
| MIRT498007 | ZBTB20 | zinc finger and BTB domain containing 20 | |
|
2 | 2 | ||||||
| MIRT498488 | PTBP2 | polypyrimidine tract binding protein 2 | |
|
2 | 10 | ||||||
| MIRT498575 | TMEM30B | transmembrane protein 30B | |
|
2 | 2 | ||||||
| MIRT499882 | SVOP | SV2 related protein | |
|
2 | 10 | ||||||
| MIRT500235 | INHBA | inhibin beta A subunit | |
|
2 | 10 | ||||||
| MIRT500709 | TRIM37 | tripartite motif containing 37 | |
|
2 | 2 | ||||||
| MIRT501003 | SPPL2A | signal peptide peptidase like 2A | |
|
2 | 4 | ||||||
| MIRT501038 | SMG1 | SMG1, nonsense mediated mRNA decay associated PI3K related kinase | |
|
2 | 6 | ||||||
| MIRT502751 | CLIP1 | CAP-Gly domain containing linker protein 1 | |
|
2 | 8 | ||||||
| MIRT502813 | CELSR3 | cadherin EGF LAG seven-pass G-type receptor 3 | |
|
2 | 6 | ||||||
| MIRT502903 | CDK4 | cyclin dependent kinase 4 | |
|
2 | 8 | ||||||
| MIRT503498 | ZNF154 | zinc finger protein 154 | |
|
2 | 6 | ||||||
| MIRT503732 | GRM5 | glutamate metabotropic receptor 5 | |
|
2 | 2 | ||||||
| MIRT505152 | YOD1 | YOD1 deubiquitinase | |
|
2 | 2 | ||||||
| MIRT505817 | RSBN1 | round spermatid basic protein 1 | |
|
2 | 8 | ||||||
| MIRT505856 | POLR1B | RNA polymerase I subunit B | |
|
2 | 4 | ||||||
| MIRT509299 | NPM3 | nucleophosmin/nucleoplasmin 3 | |
|
2 | 6 | ||||||
| MIRT516844 | CYP20A1 | cytochrome P450 family 20 subfamily A member 1 | |
|
2 | 2 | ||||||
| MIRT520534 | TRA2B | transformer 2 beta homolog | |
|
2 | 2 | ||||||
| MIRT520738 | TM9SF3 | transmembrane 9 superfamily member 3 | |
|
2 | 6 | ||||||
| MIRT525418 | SHISA9 | shisa family member 9 | |
|
2 | 4 | ||||||
| MIRT525882 | ARL13B | ADP ribosylation factor like GTPase 13B | |
|
2 | 2 | ||||||
| MIRT526028 | RBM4B | RNA binding motif protein 4B | |
|
2 | 2 | ||||||
| MIRT526099 | TMEM41B | transmembrane protein 41B | |
|
2 | 2 | ||||||
| MIRT527946 | FRY | FRY microtubule binding protein | |
|
2 | 2 | ||||||
| MIRT528833 | RAB32 | RAB32, member RAS oncogene family | |
|
2 | 2 | ||||||
| MIRT531077 | SLC9A4 | solute carrier family 9 member A4 | |
|
2 | 4 | ||||||
| MIRT535510 | PANX1 | pannexin 1 | |
|
2 | 2 | ||||||
| MIRT536697 | IKZF5 | IKAROS family zinc finger 5 | |
|
2 | 2 | ||||||
| MIRT536850 | HMBOX1 | homeobox containing 1 | |
|
2 | 2 | ||||||
| MIRT537217 | GDE1 | glycerophosphodiester phosphodiesterase 1 | |
|
2 | 4 | ||||||
| MIRT537849 | EFNA5 | ephrin A5 | |
|
2 | 2 | ||||||
| MIRT538360 | CSE1L | chromosome segregation 1 like | |
|
2 | 4 | ||||||
| MIRT541257 | GPC4 | glypican 4 | |
|
2 | 2 | ||||||
| MIRT543250 | PEX7 | peroxisomal biogenesis factor 7 | |
|
2 | 2 | ||||||
| MIRT543465 | PARP15 | poly(ADP-ribose) polymerase family member 15 | |
|
2 | 2 | ||||||
| MIRT543726 | XKR9 | XK related 9 | |
|
2 | 2 | ||||||
| MIRT543922 | ESYT1 | extended synaptotagmin 1 | |
|
2 | 2 | ||||||
| MIRT544014 | KLRC3 | killer cell lectin like receptor C3 | |
|
2 | 2 | ||||||
| MIRT544085 | METTL8 | methyltransferase like 8 | |
|
2 | 2 | ||||||
| MIRT544202 | ANGPTL3 | angiopoietin like 3 | |
|
2 | 2 | ||||||
| MIRT544823 | ACSM2B | acyl-CoA synthetase medium chain family member 2B | |
|
2 | 2 | ||||||
| MIRT545061 | PRELID1 | PRELI domain containing 1 | |
|
2 | 2 | ||||||
| MIRT545229 | HIST1H2BD | histone cluster 1 H2B family member d | |
|
2 | 2 | ||||||
| MIRT545304 | SPC25 | SPC25, NDC80 kinetochore complex component | |
|
2 | 2 | ||||||
| MIRT545565 | GIMAP4 | GTPase, IMAP family member 4 | |
|
2 | 2 | ||||||
| MIRT546512 | SIK1 | salt inducible kinase 1 | |
|
2 | 2 | ||||||
| MIRT546929 | PTP4A1 | protein tyrosine phosphatase type IVA, member 1 | |
|
2 | 2 | ||||||
| MIRT547690 | KPNA1 | karyopherin subunit alpha 1 | |
|
2 | 4 | ||||||
| MIRT547783 | KATNAL1 | katanin catalytic subunit A1 like 1 | |
|
2 | 2 | ||||||
| MIRT548702 | CRNKL1 | crooked neck pre-mRNA splicing factor 1 | |
|
2 | 2 | ||||||
| MIRT548916 | CHEK2 | checkpoint kinase 2 | |
|
2 | 4 | ||||||
| MIRT549972 | RPL7L1 | ribosomal protein L7 like 1 | |
|
2 | 4 | ||||||
| MIRT550504 | TMEM241 | transmembrane protein 241 | |
|
2 | 2 | ||||||
| MIRT551064 | MKLN1 | muskelin 1 | |
|
2 | 2 | ||||||
| MIRT552826 | XIAP | X-linked inhibitor of apoptosis | |
|
2 | 4 | ||||||
| MIRT553160 | UBE2H | ubiquitin conjugating enzyme E2 H | |
|
2 | 2 | ||||||
| MIRT553845 | SYNCRIP | synaptotagmin binding cytoplasmic RNA interacting protein | |
|
2 | 2 | ||||||
| MIRT554273 | SIX4 | SIX homeobox 4 | |
|
2 | 2 | ||||||
| MIRT555796 | PCMTD1 | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 | |
|
2 | 2 | ||||||
| MIRT556333 | MAP2K4 | mitogen-activated protein kinase kinase 4 | |
|
2 | 2 | ||||||
| MIRT556514 | LIPA | lipase A, lysosomal acid type | |
|
2 | 2 | ||||||
| MIRT556708 | KLHL28 | kelch like family member 28 | |
|
2 | 2 | ||||||
| MIRT556767 | KLF7 | Kruppel like factor 7 | |
|
2 | 2 | ||||||
| MIRT557005 | HPRT1 | hypoxanthine phosphoribosyltransferase 1 | |
|
2 | 2 | ||||||
| MIRT557161 | HOXA13 | homeobox A13 | |
|
2 | 2 | ||||||
| MIRT557502 | GPR27 | G protein-coupled receptor 27 | |
|
2 | 4 | ||||||
| MIRT558117 | ENPP5 | ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) | |
|
2 | 2 | ||||||
| MIRT559359 | ATP5G3 | ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) | |
|
2 | 2 | ||||||
| MIRT560350 | ZWINT | ZW10 interacting kinetochore protein | |
|
2 | 2 | ||||||
| MIRT561314 | ZBTB43 | zinc finger and BTB domain containing 43 | |
|
2 | 2 | ||||||
| MIRT561898 | MSANTD4 | Myb/SANT DNA binding domain containing 4 with coiled-coils | |
|
2 | 2 | ||||||
| MIRT561942 | MFSD9 | major facilitator superfamily domain containing 9 | |
|
2 | 2 | ||||||
| MIRT562950 | TNIP2 | TNFAIP3 interacting protein 2 | |
|
2 | 2 | ||||||
| MIRT563306 | BBS10 | Bardet-Biedl syndrome 10 | |
|
2 | 2 | ||||||
| MIRT563420 | KIF3A | kinesin family member 3A | |
|
2 | 2 | ||||||
| MIRT563577 | KIAA1586 | KIAA1586 | |
|
2 | 2 | ||||||
| MIRT565891 | NHS | NHS actin remodeling regulator | |
|
2 | 2 | ||||||
| MIRT566096 | RCC2 | regulator of chromosome condensation 2 | |
|
2 | 2 | ||||||
| MIRT566411 | PLAGL2 | PLAG1 like zinc finger 2 | |
|
2 | 2 | ||||||
| MIRT567274 | HSP90AA1 | heat shock protein 90 alpha family class A member 1 | |
|
2 | 2 | ||||||
| MIRT571483 | CCDC80 | coiled-coil domain containing 80 | |
|
2 | 2 | ||||||
| MIRT572954 | VDAC2 | voltage dependent anion channel 2 | |
|
2 | 2 | ||||||
| MIRT573643 | ZNF724P | zinc finger protein 724 | |
|
2 | 2 | ||||||
| MIRT573732 | KHSRP | KH-type splicing regulatory protein | |
|
2 | 2 | ||||||
| MIRT609103 | SMIM15 | small integral membrane protein 15 | |
|
2 | 6 | ||||||
| MIRT617951 | EBNA1BP2 | EBNA1 binding protein 2 | |
|
2 | 2 | ||||||
| MIRT618394 | PRKG2 | protein kinase, cGMP-dependent, type II | |
|
2 | 2 | ||||||
| MIRT619642 | PLEKHG7 | pleckstrin homology and RhoGEF domain containing G7 | |
|
2 | 2 | ||||||
| MIRT623470 | KDM5A | lysine demethylase 5A | |
|
2 | 2 | ||||||
| MIRT629160 | CTCFL | CCCTC-binding factor like | |
|
2 | 2 | ||||||
| MIRT638536 | LYRM2 | LYR motif containing 2 | |
|
2 | 2 | ||||||
| MIRT649498 | CLDN16 | claudin 16 | |
|
2 | 2 | ||||||
| MIRT683163 | MTHFD1 | methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 | |
|
2 | 2 | ||||||
| MIRT691675 | SLC43A3 | solute carrier family 43 member 3 | |
|
2 | 2 | ||||||
| MIRT693216 | MKI67 | marker of proliferation Ki-67 | |
|
2 | 2 | ||||||
| MIRT695349 | AQP3 | aquaporin 3 (Gill blood group) | |
|
2 | 2 | ||||||
| MIRT701038 | PCGF5 | polycomb group ring finger 5 | |
|
2 | 2 | ||||||
| MIRT708768 | RYBP | RING1 and YY1 binding protein | |
|
2 | 2 | ||||||
| MIRT717573 | ZBTB37 | zinc finger and BTB domain containing 37 | |
|
2 | 2 | ||||||
| MIRT719301 | SETD7 | SET domain containing lysine methyltransferase 7 | |
|
2 | 2 | ||||||
| MIRT725187 | SDAD1 | SDA1 domain containing 1 | |
|
2 | 2 | ||||||
| miRNA-Drug Resistance Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||
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