miRTarBase - #MIRT105334


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pre-miRNA Information
pre-miRNA hsa-mir-124-1   
Genomic Coordinates chr8: 9903388 - 9903472
Description Homo sapiens miR-124-1 stem-loop
Comment miR-124 was first identified by cloning studies in mouse . The 5' end of the miRNA may be offset with respect to previous annotations.
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-124-2   
Genomic Coordinates chr8: 64379149 - 64379257
Description Homo sapiens miR-124-2 stem-loop
Comment miR-124 was first identified by cloning studies in mouse . The 5' end of the miRNA may be offset with respect to previous annotations.
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-124-3   
Genomic Coordinates chr20: 63178500 - 63178586
Description Homo sapiens miR-124-3 stem-loop
Comment miR-124 was first identified by cloning studies in mouse . The 5' end of the miRNA may be offset with respect to previous annotations.
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-124-5p
Sequence 14| CGUGUUCACAGCGGACCUUGAU |35
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 8 8 + 64379180 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1280076135 1 dbSNP
rs775858016 4 dbSNP
rs760972715 7 dbSNP
rs1334649236 11 dbSNP
rs1160219511 12 dbSNP
rs764591061 12 dbSNP
rs1261326747 13 dbSNP
rs1344491363 20 dbSNP
rs1340798465 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B28CWB miR-124 Safety Biomarker (SAF); Monitoring Biomarker (MOI) Clinical/Experimental Data Expression Increase Plasma Polymerase chain reaction
B28CWB miR-124 Safety Biomarker (SAF); Monitoring Biomarker (MOI) Clinical/Experimental Data Expression Decrease Neuron Reverse transcription-polymerase chain reaction
B28CWB miR-124 Safety Biomarker (SAF); Monitoring Biomarker (MOI) Clinical/Experimental Data Expression Decrease Peripheral blood mononuclear cell Reverse transcription-polymerase chain reaction
Gene Information
Gene Symbol SLC7A2   
Synonyms ATRC2, CAT2, HCAT2
Description solute carrier family 7 member 2
Transcript NM_001008539   
Other Transcripts NM_001164771 , NM_003046   
Expression
Putative miRNA Targets on SLC7A2
3'UTR of SLC7A2
(miRNA target sites are highlighted)		 
>SLC7A2|NM_001008539|3'UTR
   1 CACTTGCAGGAGCAGAGCTGGTCATCGTCTTAGCATACATATCCTACACTGAGTAAACCGTAACGGGATGTCATCAGCAT
  81 GCTGGGTTGTCATGGGTTTGCTGCATACATAGTTCACCCTAATTTATACTTACTCATCTGGACAGCATCTCCTCAGATGG
 161 TGAATTATGTGCACGGGGAAACCTCCTGAGTGGAAGTTTCATTCATCAGTGATGAATAGCCCCCAAACAGTGGGAGTGTG
 241 TATGTATGTGTGTATGTATGTATCTATGTATATGCTTGGGAACATGAGTGTTACAAGTTAGCTGGTGTTTTACTATTATT
 321 GTGTTACATTTTTCCAGTGTCGTCATTAATCGGTGGCATATACTGCACATACTGAAATAGAGGGAAATCACTGAATGTAA
 401 AGAGGTTTCATCTATGCCCCCTGCAGTTGGGGAAATACTAGTAGCTTTACCTTGTTTGACTTCATTAATGTCAGTTTAGG
 481 GGATGCCAAAAATGCAGTTACTCATCATGGTGTCTGTCACTGGTTAGGGGTAAGATGAGGGGATAAGGAAAGAGACTTTT
 561 CAATAAGTTGTGAATGCCAACAGTGGGTTTAATGCAAATTTTTTTTCCTGTGAGGTATGACAGTTTGCTCAAACTTCAGC
 641 CAACAGGGGTGTCTGCTTCTGCTGCACTACACAGGCCAGGAGTGGCATTCCATGCCACTAGTTGGCATCCTTTTGAACTT
 721 TTGTCTCCTTTGCAAACAGTGGTCCTAAAATACGAGGTCTTCACTTGCTGTGAATGACGTATCCCCAGTCAGGGACTTAA
 801 GAGAGGCACTGTGATATACTTGGGACCCTTTAAATTAAAAAGTGAAGATAGTCACCAGGGCCAGAAAGCTCATGGAGTGG
 881 CCGTAATGAGAATATGTTTGAAGATCAAAGAGTTAGACCAATGCTTGAATAAGTAGACCCCAAGCATCCTTTTCTAAAAA
 961 GTGACTTAAAATAAGCCAACAGACTCTCCCAGACCACACAACTAGTGGAATGATTCCTCCTTTTTCCATTACTTACTTAA
1041 TCACAGTTTAGTTTTTTTCTTAACCTCGTCAGGCCCAGAGTTCACTTCTTTGTTTCTCTGTTTCTTTTGTCTTGTCTTAG
1121 AGATGAGGGGGCTACAGCAGCATCATGCAAAGAGGGAAAGATGAAGGGATAGAAGAAGAGAAAATCCCCCTGTTCTGATA
1201 GGAACGGCCTGTTCCATTGTTAAATGGCAAATGGCCCAATTTAAGGGCTTTGGATCTAATTTGCCTCTGATGTTTCCTTT
1281 GGAAACATTTAGGAATATTTTTCTCCCCCTACCCCATAAATTGTGTAGCACTTTTTATTCCATTTGCTTTCAAATGACTA
1361 CACTAAGCCTAATAATACAAGCTCCAGTGTTATACAATAACCCATCAGTGATTGGGGAATCAAACATTTTGGTTTAAAAA
1441 ACATGATTATTTAAAACTGGAAACTAAAAAGAATCAAATTGAATTAAAGCTATATAAACACAGTTAACCCTTGTAAATGA
1521 GTAAACAAATTTTTACATGTAAGATTCTCTAATTGTCATATTTTACTTTTTAGGATTCCCTAATAGTGGACTGTTTATTT
1601 GCAGTGTATTTGCTTCTCATGAACTATTTCTCGTACAAATCATTAAATAGTTCATTGGATGAGGCTGGGTGACATTTCCC
1681 AGGACAGCATGGTGAACATTACCAGGCATGCTAGCTGGCCCGTGTAATCCCAAGACAAGGAAAACATTCGTTTTCCTCAT
1761 GGGTCTTCCAAGAAATGAGCTATTTTATTGATGCCATTAAAAAGCAAGTTGCGATGGTTTTGTATAGCCAGGAGTTTATT
1841 GTGATTAAACATCAAAGAAACAGGTAGAAAGCCTGGGTTTCTGGCTGCTAGCGTTATAGCATCCATGACACAGAACTCAT
1921 TACGGACATTCCACAACTTCCAGGGTGCACATGGTAAAATCTGAAGCCCAGAATTTTCTCTCAAGCTGCGTGGTTTACTG
2001 GAGAGAAGGAGTTGGATAAGCACAGGCTCGGGTATTTTGGTAGGGACTGTAGGCATGCTCATAAATCCTTGCTGTTGTCA
2081 CAGTACGCTGAAAACCCGTTTGATTCTATACCCAATCAAGAATAGACCCTTCACACAGGAAATGTGAACAATTGTTATAT
2161 ATGAACACTCAAATCTTTTACTGTAACGAAACCAAGAAACTTGTTTAGAATGTGATAGGCAGCTAAAACTGTTATGCCCA
2241 CTGTGCTCAATTTGAAGCAGAATTTAGTGAAAAATTATTTTTCCACATTGAAACACTTTGCAGACACAAATATCTATGAA
2321 AAGATGCTTTGTCAGCCACTGTGCCTTTTTTTCTGTGAAGACTCAACGGATGTGTGTGTTTGTATGTTTGTTAACAGTTA
2401 CATATGTTTGTATGAGTGTATATATATATCTGTGTGTGTGTATCTCTAACGTCAGTGTATAAGTAAGTTGGGTTTATGGT
2481 GGGCTTTGACTATGTCATTAGGTGGGTACAAAACCCAACTGATGTGGAGAAAAATTGATGTTTGATGTTGATAGATATGC
2561 TTATACCTAATTTTTAGTTTTTAAACTATTTTAAAATATACTATGATTTTATATGTATATTTCCTATAGACTCTTTAAGA
2641 CGTATTTATAATGTTTCTAATATGAAATCACTAAACTCTAGTACATTATAGCAGGTGCTTTGTAATCTGGAATGGAGAAG
2721 AGGTAGGGGCATTTGGGGATTCCTGTTTACTTGCTGCTGCCACACCTTTTCCGACTGATCTGTCCTGGTAGGTGTTTATT
2801 AGCAAAAGTCAGTATCACCAGCTCTTTGGCACCTTTCTGTTTCTGCTTGTGAATTCATAATGTTTTCAACTAAATTTTTT
2881 TTTTACTTTCTCAGAATTACCTAAATGTTTTGTAGAGTTTTGACTAGTAATCAATCAAAATTATATAAAGTCTTCTCCAG
2961 TAATTAAGAAATACATATGCAAATTCTTTTGTGATTGAGTAAAAGCAGCTTAAATTACTTTTCTTTTCTACATTAAGAAA
3041 TATATTCTCAACATTTTCAGTGAGAATTTCTTGTAATGGCACCTCAAATTTTATACTCTTAAAAAAAAACAATAATTTGT
3121 GAATTACCACCAAAAGGCAATGGCAGTCCTACATTTAAGAATAGAGCTATGCAAACTCTGTTAAAAACTATGAGGAAAAC
3201 TTATATTAGAACTTTTGATATATACTAAAATACTGATTATCTTAATCACATTTTCCCCAGAGATAAACATTGAGAGAACG
3281 AAAGCCAAAGTGTCATTTAAGAGAGATATATATGAAAAAGTAACATTAATATATAGAACTTTACCATCACCAGCCGTAGT
3361 TGATAGAAAATATTAGTTTCAGAATTACCCTCCTTTAAAAAATAAGAGACTATTTGTTTTCTTTTAATTTCTATGAATAA
3441 AAGAAATTTTTAAAAACTTTAAAATTTTAAATATTAGTCAAAATACTTTTTAAGTCCTGAGTGCTTACAGGTAGTTGTTA
3521 AAAAAATTTTAAGGCCAGGCATGGTGGCTCGCTCACACCTATAATCCTAGGATCTTGGGAGGTCGAGGCAAGCTGATCGC
3601 TTGAGCCCAGGAGTTTAAGACCGGCCTGAGTAGCATAGCAAGACCCTGTCTCTACAAAAAAAACAAAAATTAGCTGGGCA
3681 TGGTGGCATGCACATGTAGTCAGAGCTACTGGGGGTGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGAGTGAGGCTGCA
3761 GTGAGCTGAGATTACGCCACTGCACTCTAGCCTGGGCAACGGTGAGACCCTGCCTCAAAAAAAATAAAAATAAAAATAAA
3841 ACACTTTAATTAGAATCTATTTTTACCTATTTTCTAAATTTATTTAAATGCTTAGCAGGAAGCATAAGGAAAAGCCATCG
3921 GCCTCCAATACCCATGATGACAGAGGGAGCACTTGAGCCTTGCCTTCCCTCCTCTTAAATCAGGGTGTGTTCCGAGATTA
4001 CAGAACATCACACCTTGGCGTGATGAAATCATGCCAAGATTCTGACTCTCCCTTTCCGGTGATACTGCTCATGATTTCTC
4081 CTAATACGCTTCAAGCAACTGTTACCACAAAAAATACAGTTTCCGCAGGGCTTTAAAGGATTGAGTTTAGCATGTATATC
4161 ATGCGTTATTAAAGTTCACGTGATTCATGTGAAATTAACTGTCCTTTTTGCTAGTGCCAAAACAGTGCCTTCTCTGCACA
4241 CTTTACTTGTTTATAAAGTTCTCCCACATGTCCTTAAATATCAAGGGGGAAAGTATGGATATTCGCGTAGCAATAATGCC
4321 AGCAAAGGTCATTTTCATTTTTTAGTCATATAGATATGAAAATAAGTTCATATAGATATGAAATTGCTTGACTTTATTGT
4401 TTTGGGGAGATTTTTTTTCCTTACATGATTATATTAAACACTTTAAAATAGCCTTCCGGTTTCTGGATTTTGAGAAGCCT
4481 GATCTGTTATTGTTGTGGTTGTTGGTGTTTGTAATATTCATTATTGTTTGTATATACACGGTTTAGTCTTACTGATTTCA
4561 AATGCATTTTGTTATTGCTCAACCCAACTGGTAACACTGTTTGCTGGGAGCATTATACTTAACTTTGATTCACCATGGTT
4641 GATGCCACTGCCATGATCGCTGGGTCTTAAAGAGCTTTCCCTAGCCACTGACAGCCCCGTGGAGATCATAATCAGGGCCC
4721 CAGGCTGGTTCCAGGATCAGGCAGCCTATAGAGTGTGAGCATCTATGTGTAGCTACCCTTGTTGGGTGGGCTCTTAGACT
4801 GATGGGGTAGGATATGAAGTGAAAGACTTCAAATGCAAGTAAGGTAGTTTGGGCTCCTTAATTCCAAACATCCCATGAGT
4881 ATATCAAGATGAATAAGGACCAAGGGACCTCTGTGACTCATAGAAGGGCTGGCTGAATCCTGAAGTAGCATAGTGGGACC
4961 TGGTCTACAATTTATGCACATGCACTGACAGCCTTGCTGTGCCACGTGTCTCACCAAGACCCAGTTGGGAAAGAGCGTCA
5041 TATTGCCAACAGGTTGGGTTTCTCTGGCCTACACCTGATTAATGGGCCCTTTATCTTTGGTGTCCCCTAGGAGTGTCCAG
5121 TTGTTTTATTGCTGTATTTTGTTATTGCAGTACTTAATAAAAATTGTTGATAGGGCCCAAAACCCTACAGAAATTCTATG
5201 TCTGTAAAAACCAACAAAGGCATTGGACTTGTGTGAATGTACAGGGTTTTTTTAGTAGTAATTTTAAATTTAAATGTTTT
5281 AAGTGATCATCAGTGTTCCTTTTTACTTATAAAGTTGGATTCTTTTTTAGAATTTGTAATAAATAAAAACTGCTGCTTTA
5361 CCACTGTAAAATATGCTTTCTGATGTGGTGTATTTTTAAAATAAATTTTAATATGTAATAATAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaGUU-CCAGGCGACACUUGUGc 5'
            |||  ||:   | ||||||| 
Target 5' aaCAATTGTTATATATGAACACt 3'
 2147 - 2169 148.00 -7.60
2 
miRNA  3' uaGUUCCAGGCG-A-CACUUGUGc 5'
            | ||| | || | |||||||: 
Target 5' tcCCAGGACAGCATGGTGAACATt 3'
 1677 - 1700 144.00 -12.20
3 
miRNA  3' uaGUUCCAGGCGACACUUGUGc 5'
            |||  |  |:||||||::| 
Target 5' ttCAA--TAAGTTGTGAATGCc 3'
 559 - 578 128.00 -9.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30100951 28 COSMIC
COSN30151014 54 COSMIC
COSN31552292 61 COSMIC
COSN28663526 63 COSMIC
COSN30472820 68 COSMIC
COSN28884021 69 COSMIC
COSN30121880 125 COSMIC
COSN15661822 528 COSMIC
COSN22879599 607 COSMIC
COSN9607517 865 COSMIC
COSN17076525 1069 COSMIC
COSN9258955 1182 COSMIC
COSN20105184 1508 COSMIC
COSN27786335 1587 COSMIC
COSN20105185 1608 COSMIC
COSN31540432 1790 COSMIC
COSN26572888 1877 COSMIC
COSN26562584 1908 COSMIC
COSN31530107 1977 COSMIC
COSN26325612 2353 COSMIC
COSN22047960 2555 COSMIC
COSN9607518 2871 COSMIC
COSN20091762 2885 COSMIC
COSN20105186 2885 COSMIC
COSN19573394 3136 COSMIC
COSN5110422 3161 COSMIC
COSN21093587 3274 COSMIC
COSN27652839 3491 COSMIC
COSN23776758 3676 COSMIC
COSN6918445 3722 COSMIC
COSN29914878 4028 COSMIC
COSN21636952 4132 COSMIC
COSN25622437 4305 COSMIC
COSN20091764 4417 COSMIC
COSN25368209 4528 COSMIC
COSN2268544 4661 COSMIC
COSN29644187 4852 COSMIC
COSN25099073 5073 COSMIC
COSN31606560 5270 COSMIC
COSN26644082 5284 COSMIC
COSN31569767 5322 COSMIC
COSN31568203 5324 COSMIC
COSN27463621 5387 COSMIC
rs7838611 63 GWAS
rs75902664 4532 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs545197993 5 dbSNP
rs772335787 6 dbSNP
rs527383903 8 dbSNP
rs1354750393 9 dbSNP
rs1298718170 11 dbSNP
rs760846248 12 dbSNP
rs1283643250 13 dbSNP
rs1334433119 15 dbSNP
rs1209304937 16 dbSNP
rs371271210 24 dbSNP
rs375940483 25 dbSNP
rs367821752 27 dbSNP
rs750945665 28 dbSNP
rs1300481899 30 dbSNP
rs1421122383 34 dbSNP
rs1260618746 35 dbSNP
rs759038687 36 dbSNP
rs1190302573 37 dbSNP
rs1261488510 38 dbSNP
rs1390519773 39 dbSNP
rs767083662 42 dbSNP
rs752318750 44 dbSNP
rs1360811262 45 dbSNP
rs755670099 48 dbSNP
rs760888772 53 dbSNP
rs145799230 56 dbSNP
rs1427123801 58 dbSNP
rs1200102304 59 dbSNP
rs548268454 60 dbSNP
rs1010805755 61 dbSNP
rs7838611 63 dbSNP
rs953065353 65 dbSNP
rs1339975364 66 dbSNP
rs1209069258 72 dbSNP
rs998422607 76 dbSNP
rs1009101547 77 dbSNP
rs529600028 79 dbSNP
rs138456382 80 dbSNP
rs1200351220 84 dbSNP
rs1223405375 91 dbSNP
rs961757474 99 dbSNP
rs1262587343 104 dbSNP
rs569984863 110 dbSNP
rs868739931 116 dbSNP
rs79677945 119 dbSNP
rs778501899 120 dbSNP
rs1362153864 121 dbSNP
rs1287949538 129 dbSNP
rs991744868 132 dbSNP
rs1161859892 134 dbSNP
rs558868747 136 dbSNP
rs566192987 146 dbSNP
rs950078943 158 dbSNP
rs1176586495 161 dbSNP
rs1469217872 162 dbSNP
rs12156021 163 dbSNP
rs7842106 164 dbSNP
rs1428919230 165 dbSNP
rs934720701 168 dbSNP
rs1184966899 173 dbSNP
rs7842109 174 dbSNP
rs1243806134 175 dbSNP
rs893626763 176 dbSNP
rs537397658 183 dbSNP
rs1260570441 191 dbSNP
rs1219582077 192 dbSNP
rs1307320132 197 dbSNP
rs956928458 203 dbSNP
rs556520512 206 dbSNP
rs761341672 227 dbSNP
rs576373070 229 dbSNP
rs1243930345 230 dbSNP
rs765149092 235 dbSNP
rs1451295252 236 dbSNP
rs888993132 238 dbSNP
rs1008576780 239 dbSNP
rs1223507736 241 dbSNP
rs113583223 243 dbSNP
rs79003887 245 dbSNP
rs7842267 247 dbSNP
rs934122068 249 dbSNP
rs1183006872 252 dbSNP
rs1442883858 253 dbSNP
rs993231059 254 dbSNP
rs77477437 255 dbSNP
rs952240666 256 dbSNP
rs1262468324 261 dbSNP
rs1442371765 268 dbSNP
rs886961121 269 dbSNP
rs1004095039 271 dbSNP
rs992191234 274 dbSNP
rs12155849 278 dbSNP
rs898450558 279 dbSNP
rs1012994901 280 dbSNP
rs1310872706 281 dbSNP
rs972025798 282 dbSNP
rs1395766070 285 dbSNP
rs1459264212 289 dbSNP
rs1366377463 291 dbSNP
rs981424465 304 dbSNP
rs186345827 305 dbSNP
rs1423022137 311 dbSNP
rs1417445326 312 dbSNP
rs574449878 314 dbSNP
rs1182696422 315 dbSNP
rs1419002468 320 dbSNP
rs934774887 328 dbSNP
rs560601543 331 dbSNP
rs1395402650 339 dbSNP
rs529661284 342 dbSNP
rs751445160 343 dbSNP
rs544305022 346 dbSNP
rs1356896971 349 dbSNP
rs541824260 352 dbSNP
rs1239140861 353 dbSNP
rs1335041279 354 dbSNP
rs1304817853 357 dbSNP
rs1388259935 361 dbSNP
rs1345882668 367 dbSNP
rs1302366583 374 dbSNP
rs190209106 397 dbSNP
rs1384901012 405 dbSNP
rs879158806 410 dbSNP
rs7842456 411 dbSNP
rs572463143 417 dbSNP
rs1159154458 428 dbSNP
rs1453171691 439 dbSNP
rs915097225 443 dbSNP
rs1308231462 449 dbSNP
rs1351821360 451 dbSNP
rs1242520427 452 dbSNP
rs946572211 454 dbSNP
rs1268605648 456 dbSNP
rs1197791221 471 dbSNP
rs377748150 480 dbSNP
rs546312331 485 dbSNP
rs1205157859 490 dbSNP
rs1349373560 499 dbSNP
rs781215318 505 dbSNP
rs1225249312 507 dbSNP
rs968292718 513 dbSNP
rs7823792 517 dbSNP
rs566133272 523 dbSNP
rs1040086018 524 dbSNP
rs1328365425 539 dbSNP
rs535179636 545 dbSNP
rs1381903204 547 dbSNP
rs548398397 549 dbSNP
rs993283373 555 dbSNP
rs752132661 557 dbSNP
rs1470584804 564 dbSNP
rs1236691459 568 dbSNP
rs1174654132 571 dbSNP
rs1479021853 575 dbSNP
rs986907689 578 dbSNP
rs1193421301 587 dbSNP
rs1437461913 592 dbSNP
rs1027405378 596 dbSNP
rs1259041437 599 dbSNP
rs908342178 599 dbSNP
rs1461662494 607 dbSNP
rs1160775248 619 dbSNP
rs1221419258 624 dbSNP
rs1262449833 624 dbSNP
rs939829086 631 dbSNP
rs1270600320 639 dbSNP
rs1226949508 642 dbSNP
rs1324970523 646 dbSNP
rs1363885262 649 dbSNP
rs1338699891 650 dbSNP
rs1453486603 657 dbSNP
rs375828795 665 dbSNP
rs1038249575 666 dbSNP
rs1405927003 692 dbSNP
rs1335359981 694 dbSNP
rs1467683307 696 dbSNP
rs1465167378 699 dbSNP
rs887486667 705 dbSNP
rs568540221 707 dbSNP
rs1474875668 719 dbSNP
rs537460122 724 dbSNP
rs557379770 726 dbSNP
rs898398212 728 dbSNP
rs1453248987 729 dbSNP
rs948677654 730 dbSNP
rs1013097401 733 dbSNP
rs1023529825 740 dbSNP
rs1242030308 751 dbSNP
rs1374305796 754 dbSNP
rs1439549541 757 dbSNP
rs368050803 764 dbSNP
rs1195011632 772 dbSNP
rs74844803 779 dbSNP
rs538544488 789 dbSNP
rs150185104 795 dbSNP
rs1313075732 807 dbSNP
rs1265046623 817 dbSNP
rs891584447 818 dbSNP
rs1324916862 822 dbSNP
rs879081752 822 dbSNP
rs1198519965 827 dbSNP
rs1328522852 845 dbSNP
rs1009670316 848 dbSNP
rs1165050454 852 dbSNP
rs1424953455 854 dbSNP
rs374034884 856 dbSNP
rs1181290807 858 dbSNP
rs6586610 859 dbSNP
rs1178139852 869 dbSNP
rs968679178 874 dbSNP
rs142976486 877 dbSNP
rs1491509339 877 dbSNP
rs56300620 878 dbSNP
rs67726594 878 dbSNP
rs11427242 879 dbSNP
rs60692064 879 dbSNP
rs956036066 882 dbSNP
rs35210464 883 dbSNP
rs1470266285 884 dbSNP
rs1440421003 893 dbSNP
rs908625829 897 dbSNP
rs914671252 902 dbSNP
rs1398020059 913 dbSNP
rs6980566 915 dbSNP
rs986000196 919 dbSNP
rs1367215315 928 dbSNP
rs910359491 935 dbSNP
rs1364576026 940 dbSNP
rs1285302102 942 dbSNP
rs1401956882 949 dbSNP
rs1408570447 950 dbSNP
rs1346171321 954 dbSNP
rs944636868 955 dbSNP
rs1471599561 959 dbSNP
rs1276943130 967 dbSNP
rs560621922 980 dbSNP
rs1309768201 981 dbSNP
rs768104838 996 dbSNP
rs375378914 998 dbSNP
rs185224414 1001 dbSNP
rs386723005 1001 dbSNP
rs371483534 1002 dbSNP
rs7014645 1002 dbSNP
rs10093732 1003 dbSNP
rs1326363402 1018 dbSNP
rs1284252956 1020 dbSNP
rs1223292185 1023 dbSNP
rs1344418995 1028 dbSNP
rs1013060436 1029 dbSNP
rs191169449 1037 dbSNP
rs1270417366 1038 dbSNP
rs1432506913 1042 dbSNP
rs1345249398 1047 dbSNP
rs1317097183 1048 dbSNP
rs1455577590 1052 dbSNP
rs1431364546 1055 dbSNP
rs548767844 1061 dbSNP
rs1176817109 1066 dbSNP
rs60447279 1068 dbSNP
rs116690091 1069 dbSNP
rs1052739513 1075 dbSNP
rs1003118346 1084 dbSNP
rs1241590117 1085 dbSNP
rs1213740514 1088 dbSNP
rs1463002423 1089 dbSNP
rs1421446029 1090 dbSNP
rs1203387239 1095 dbSNP
rs1321813942 1100 dbSNP
rs891532093 1101 dbSNP
rs551044104 1106 dbSNP
rs1215951861 1109 dbSNP
rs73560701 1132 dbSNP
rs1170915932 1136 dbSNP
rs1269016047 1138 dbSNP
rs533627426 1144 dbSNP
rs1408148689 1150 dbSNP
rs1337347624 1153 dbSNP
rs558598845 1155 dbSNP
rs997475666 1157 dbSNP
rs1305119751 1163 dbSNP
rs1366426958 1165 dbSNP
rs1028567571 1171 dbSNP
rs1186693440 1180 dbSNP
rs1446550320 1184 dbSNP
rs990180806 1188 dbSNP
rs565930450 1189 dbSNP
rs1276361274 1190 dbSNP
rs112082357 1191 dbSNP
rs554320993 1200 dbSNP
rs6998033 1202 dbSNP
rs553842519 1205 dbSNP
rs144729091 1206 dbSNP
rs766136135 1207 dbSNP
rs1225494141 1209 dbSNP
rs6998037 1212 dbSNP
rs1248618640 1213 dbSNP
rs975876047 1217 dbSNP
rs1451817642 1219 dbSNP
rs1376891225 1220 dbSNP
rs1293565083 1226 dbSNP
rs1490404024 1232 dbSNP
rs1462326098 1234 dbSNP
rs1354113395 1236 dbSNP
rs1166909950 1238 dbSNP
rs1426843215 1239 dbSNP
rs1385926060 1243 dbSNP
rs1215305309 1245 dbSNP
rs1239819045 1249 dbSNP
rs1183141921 1250 dbSNP
rs969908040 1251 dbSNP
rs556599395 1257 dbSNP
rs1178094934 1265 dbSNP
rs1412811716 1268 dbSNP
rs576767111 1271 dbSNP
rs1202563672 1274 dbSNP
rs6980866 1288 dbSNP
rs1048742671 1294 dbSNP
rs114429564 1298 dbSNP
rs948530187 1304 dbSNP
rs1052688774 1306 dbSNP
rs1319799297 1307 dbSNP
rs1309098717 1310 dbSNP
rs758242165 1312 dbSNP
rs1372314737 1314 dbSNP
rs906921640 1321 dbSNP
rs752730729 1324 dbSNP
rs947100656 1325 dbSNP
rs1366434605 1326 dbSNP
rs1042796869 1332 dbSNP
rs756150731 1336 dbSNP
rs1377604405 1338 dbSNP
rs528768899 1348 dbSNP
rs892066042 1350 dbSNP
rs80099757 1357 dbSNP
rs777568283 1361 dbSNP
rs1250050033 1373 dbSNP
rs764253201 1374 dbSNP
rs1050372921 1375 dbSNP
rs1238907578 1388 dbSNP
rs1269178621 1394 dbSNP
rs754043361 1398 dbSNP
rs746432777 1412 dbSNP
rs891365647 1413 dbSNP
rs183910483 1416 dbSNP
rs1239660949 1417 dbSNP
rs1328478139 1418 dbSNP
rs1007017280 1424 dbSNP
rs6999536 1426 dbSNP
rs1225131715 1430 dbSNP
rs142782143 1432 dbSNP
rs6998481 1433 dbSNP
rs1385354092 1434 dbSNP
rs1387209133 1435 dbSNP
rs553865171 1447 dbSNP
rs1289582483 1452 dbSNP
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rs970569750 1467 dbSNP
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rs928468671 1480 dbSNP
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rs1263212314 1495 dbSNP
rs533186424 1499 dbSNP
rs988694552 1504 dbSNP
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rs56780055 1506 dbSNP
rs796117489 1506 dbSNP
rs1205286997 1509 dbSNP
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rs1274083932 1514 dbSNP
rs60218157 1521 dbSNP
rs1328491270 1527 dbSNP
rs1296313764 1532 dbSNP
rs1434489029 1538 dbSNP
rs1387034731 1540 dbSNP
rs565862061 1543 dbSNP
rs938410643 1546 dbSNP
rs1053240633 1548 dbSNP
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rs188460077 1554 dbSNP
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rs1171258821 1566 dbSNP
rs35506586 1567 dbSNP
rs1011866689 1575 dbSNP
rs1445590049 1578 dbSNP
rs1193216652 1581 dbSNP
rs1043700688 1585 dbSNP
rs1448384961 1586 dbSNP
rs890006976 1589 dbSNP
rs931752898 1591 dbSNP
rs1375056023 1594 dbSNP
rs1049893874 1596 dbSNP
rs769311240 1598 dbSNP
rs142658536 1608 dbSNP
rs375289263 1608 dbSNP
rs34780401 1609 dbSNP
rs397749802 1609 dbSNP
rs57092123 1609 dbSNP
rs1341673578 1613 dbSNP
rs965474908 1620 dbSNP
rs1205432156 1623 dbSNP
rs1252136897 1624 dbSNP
rs1263545524 1625 dbSNP
rs567923397 1625 dbSNP
rs1227986987 1627 dbSNP
rs183038897 1633 dbSNP
rs748936399 1634 dbSNP
rs1453982210 1638 dbSNP
rs1340401613 1647 dbSNP
rs950600857 1648 dbSNP
rs1470617131 1657 dbSNP
rs984601935 1663 dbSNP
rs556660091 1670 dbSNP
rs1168105127 1671 dbSNP
rs897450292 1673 dbSNP
rs1387774296 1675 dbSNP
rs576840054 1678 dbSNP
rs995486814 1683 dbSNP
rs969970322 1688 dbSNP
rs58218284 1690 dbSNP
rs928287114 1693 dbSNP
rs1185089132 1701 dbSNP
rs1439304458 1706 dbSNP
rs1251030895 1707 dbSNP
rs774116656 1709 dbSNP
rs1204683771 1716 dbSNP
rs139731868 1722 dbSNP
rs541916876 1723 dbSNP
rs1246819760 1737 dbSNP
rs1356206960 1747 dbSNP
rs988512962 1750 dbSNP
rs75400410 1751 dbSNP
rs527326031 1755 dbSNP
rs878884916 1756 dbSNP
rs1464448717 1759 dbSNP
rs1408836785 1760 dbSNP
rs1368323312 1762 dbSNP
rs1164880045 1765 dbSNP
rs542534341 1778 dbSNP
rs947547069 1779 dbSNP
rs1355962764 1780 dbSNP
rs1412491523 1782 dbSNP
rs142714429 1789 dbSNP
rs1471152142 1791 dbSNP
rs1364156260 1800 dbSNP
rs1181191602 1805 dbSNP
rs988640550 1809 dbSNP
rs1271351543 1812 dbSNP
rs1223267876 1813 dbSNP
rs767445488 1814 dbSNP
rs775457769 1816 dbSNP
rs1225964575 1817 dbSNP
rs531148567 1818 dbSNP
rs1352126389 1825 dbSNP
rs968630682 1832 dbSNP
rs187159342 1837 dbSNP
rs921608300 1842 dbSNP
rs1304546345 1851 dbSNP
rs564455695 1852 dbSNP
rs1283909474 1856 dbSNP
rs773741287 1859 dbSNP
rs1402306316 1861 dbSNP
rs1317197883 1864 dbSNP
rs377719227 1866 dbSNP
rs150596605 1872 dbSNP
rs1158080090 1879 dbSNP
rs1471506408 1883 dbSNP
rs1274809044 1889 dbSNP
rs139457516 1893 dbSNP
rs566849060 1894 dbSNP
rs529209443 1896 dbSNP
rs191656847 1900 dbSNP
rs567986744 1903 dbSNP
rs1006478673 1906 dbSNP
rs1200218866 1910 dbSNP
rs1326069229 1913 dbSNP
rs1423608094 1915 dbSNP
rs879068288 1916 dbSNP
rs1048364494 1917 dbSNP
rs866240615 1924 dbSNP
rs1016074933 1925 dbSNP
rs1001594880 1928 dbSNP
rs1365791029 1931 dbSNP
rs1170042260 1934 dbSNP
rs757549858 1938 dbSNP
rs979977107 1941 dbSNP
rs1455621620 1943 dbSNP
rs1035352608 1952 dbSNP
rs1036177373 1954 dbSNP
rs1414058248 1958 dbSNP
rs1302073057 1961 dbSNP
rs1423344305 1962 dbSNP
rs529633336 1972 dbSNP
rs1188310606 1981 dbSNP
rs959697029 1983 dbSNP
rs1450128233 1990 dbSNP
rs765756195 1991 dbSNP
rs1187207179 1994 dbSNP
rs536864775 1995 dbSNP
rs1264069243 2006 dbSNP
rs1020103490 2010 dbSNP
rs1311198361 2015 dbSNP
rs968578124 2024 dbSNP
rs1303194060 2025 dbSNP
rs550737423 2030 dbSNP
rs947130301 2031 dbSNP
rs1271728388 2032 dbSNP
rs979359432 2033 dbSNP
rs974360402 2034 dbSNP
rs1384917299 2041 dbSNP
rs1303159837 2042 dbSNP
rs911380311 2044 dbSNP
rs942964837 2046 dbSNP
rs1041314413 2048 dbSNP
rs750832954 2049 dbSNP
rs1289941412 2050 dbSNP
rs901384169 2056 dbSNP
rs929968724 2061 dbSNP
rs183751914 2062 dbSNP
rs539508076 2067 dbSNP
rs888545370 2076 dbSNP
rs1005616052 2080 dbSNP
rs961817809 2082 dbSNP
rs1262516490 2086 dbSNP
rs1016541581 2087 dbSNP
rs918775062 2088 dbSNP
rs1225568543 2091 dbSNP
rs11991148 2094 dbSNP
rs780459748 2096 dbSNP
rs1001446427 2097 dbSNP
rs1227718498 2098 dbSNP
rs1035576175 2099 dbSNP
rs1162028992 2114 dbSNP
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rs959916621 2117 dbSNP
rs1426656863 2120 dbSNP
rs988450504 2121 dbSNP
rs1422642691 2129 dbSNP
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rs1383539768 2158 dbSNP
rs752060670 2159 dbSNP
rs1202365653 2160 dbSNP
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rs978525437 2173 dbSNP
rs755615308 2175 dbSNP
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rs1320283037 2179 dbSNP
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rs559887009 2189 dbSNP
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rs1293086230 2204 dbSNP
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rs2705021 2266 dbSNP
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rs1201978373 2341 dbSNP
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rs1000228886 2370 dbSNP
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rs1251428696 2397 dbSNP
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rs376384621 2419 dbSNP
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rs202055069 2421 dbSNP
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rs750636708 2998 dbSNP
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rs1020988045 3644 dbSNP
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rs1008247055 3655 dbSNP
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rs964762060 3703 dbSNP
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rs1301100732 3713 dbSNP
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rs1428871428 3733 dbSNP
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rs767332679 3745 dbSNP
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rs1038009970 3751 dbSNP
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rs937742563 3755 dbSNP
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rs1185195206 3761 dbSNP
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rs1055247527 3768 dbSNP
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rs1290260025 3884 dbSNP
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rs1156381781 3993 dbSNP
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rs895207087 4310 dbSNP
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rs1322316326 4341 dbSNP
rs146463791 4350 dbSNP
rs1012306427 4351 dbSNP
rs1272091452 4352 dbSNP
rs1046177905 4356 dbSNP
rs924145997 4357 dbSNP
rs139870095 4363 dbSNP
rs1279691624 4366 dbSNP
rs567582473 4368 dbSNP
rs1451640756 4369 dbSNP
rs757787384 4370 dbSNP
rs1313266538 4373 dbSNP
rs541615246 4377 dbSNP
rs989616037 4379 dbSNP
rs545582135 4387 dbSNP
rs536479888 4390 dbSNP
rs766076174 4395 dbSNP
rs567670293 4409 dbSNP
rs1010977166 4410 dbSNP
rs553361348 4410 dbSNP
rs879765050 4415 dbSNP
rs578207531 4417 dbSNP
rs1438352522 4418 dbSNP
rs1349196140 4422 dbSNP
rs1397385593 4425 dbSNP
rs976505879 4432 dbSNP
rs1251526702 4433 dbSNP
rs200077799 4433 dbSNP
rs1218921252 4439 dbSNP
rs922379483 4440 dbSNP
rs563715980 4442 dbSNP
rs1204076959 4449 dbSNP
rs549949791 4452 dbSNP
rs570174874 4456 dbSNP
rs538755892 4457 dbSNP
rs899211003 4458 dbSNP
rs558964108 4467 dbSNP
rs572360230 4474 dbSNP
rs916586053 4476 dbSNP
rs948107421 4481 dbSNP
rs534983569 4483 dbSNP
rs1377367597 4484 dbSNP
rs1174740814 4485 dbSNP
rs554129957 4486 dbSNP
rs1434714775 4498 dbSNP
rs552064539 4506 dbSNP
rs200423982 4511 dbSNP
rs542876251 4512 dbSNP
rs1362654101 4514 dbSNP
rs1333746915 4516 dbSNP
rs562532313 4520 dbSNP
rs970504938 4523 dbSNP
rs1242296901 4531 dbSNP
rs75902664 4532 dbSNP
rs544778290 4533 dbSNP
rs1030656061 4536 dbSNP
rs1486986084 4537 dbSNP
rs564951233 4539 dbSNP
rs989709403 4540 dbSNP
rs149838039 4541 dbSNP
rs893686806 4546 dbSNP
rs1216068938 4554 dbSNP
rs922194379 4560 dbSNP
rs1362428837 4564 dbSNP
rs1010825463 4566 dbSNP
rs1398387358 4571 dbSNP
rs1357442886 4581 dbSNP
rs7827805 4582 dbSNP
rs899489925 4583 dbSNP
rs1357964941 4584 dbSNP
rs12156132 4587 dbSNP
rs912087115 4588 dbSNP
rs1419259518 4591 dbSNP
rs1169516023 4596 dbSNP
rs1396778142 4597 dbSNP
rs951139169 4598 dbSNP
rs12156191 4602 dbSNP
rs1230284946 4604 dbSNP
rs550010725 4615 dbSNP
rs972587694 4619 dbSNP
rs1188096227 4622 dbSNP
rs1015112694 4626 dbSNP
rs1235619360 4628 dbSNP
rs963926955 4636 dbSNP
rs1206551221 4638 dbSNP
rs973688943 4644 dbSNP
rs920588905 4646 dbSNP
rs1323411261 4647 dbSNP
rs1217017884 4653 dbSNP
rs930662936 4658 dbSNP
rs1048269194 4659 dbSNP
rs746055677 4662 dbSNP
rs895073019 4663 dbSNP
rs1377095686 4664 dbSNP
rs145842872 4665 dbSNP
rs928041838 4666 dbSNP
rs185375015 4676 dbSNP
rs529193019 4681 dbSNP
rs879574445 4690 dbSNP
rs370315519 4691 dbSNP
rs1435629738 4692 dbSNP
rs1463706731 4696 dbSNP
rs567175890 4698 dbSNP
rs189732713 4699 dbSNP
rs1412672167 4708 dbSNP
rs946574430 4716 dbSNP
rs535044739 4718 dbSNP
rs1031189575 4723 dbSNP
rs997838784 4724 dbSNP
rs1319997726 4727 dbSNP
rs760962248 4733 dbSNP
rs1373305743 4734 dbSNP
rs1010585667 4735 dbSNP
rs1443508279 4736 dbSNP
rs1029211321 4739 dbSNP
rs559353341 4742 dbSNP
rs3173997 4743 dbSNP
rs1029346554 4744 dbSNP
rs554987239 4748 dbSNP
rs987757762 4751 dbSNP
rs1394571566 4752 dbSNP
rs12156195 4754 dbSNP
rs2285294 4759 dbSNP
rs972151127 4763 dbSNP
rs576165220 4766 dbSNP
rs762552662 4771 dbSNP
rs1345458210 4772 dbSNP
rs1455373509 4774 dbSNP
rs920689351 4777 dbSNP
rs963570606 4783 dbSNP
rs974019893 4792 dbSNP
rs767299434 4793 dbSNP
rs1313220689 4797 dbSNP
rs969643615 4804 dbSNP
rs545151935 4810 dbSNP
rs991450138 4816 dbSNP
rs1284433743 4817 dbSNP
rs1237150497 4824 dbSNP
rs1372173301 4831 dbSNP
rs1303201459 4836 dbSNP
rs1250462394 4850 dbSNP
rs1365095347 4852 dbSNP
rs1337010049 4854 dbSNP
rs564848175 4856 dbSNP
rs1206722613 4859 dbSNP
rs915950192 4870 dbSNP
rs1490170839 4872 dbSNP
rs765771497 4875 dbSNP
rs935378774 4881 dbSNP
rs1197113057 4886 dbSNP
rs2285295 4887 dbSNP
rs1197954117 4890 dbSNP
rs915348947 4895 dbSNP
rs1433604434 4897 dbSNP
rs946550687 4899 dbSNP
rs1187346645 4901 dbSNP
rs1261206029 4903 dbSNP
rs1487966809 4903 dbSNP
rs1046771364 4905 dbSNP
rs1349293978 4907 dbSNP
rs56359653 4911 dbSNP
rs1431805853 4925 dbSNP
rs1231473605 4928 dbSNP
rs182126424 4951 dbSNP
rs1400230331 4952 dbSNP
rs1339262082 4956 dbSNP
rs1295864786 4957 dbSNP
rs1416511815 4963 dbSNP
rs1052158645 4978 dbSNP
rs767215176 4979 dbSNP
rs752556538 4980 dbSNP
rs1010701483 4985 dbSNP
rs1171953160 4987 dbSNP
rs1028656692 4993 dbSNP
rs888813583 4999 dbSNP
rs12155892 5002 dbSNP
rs1477650325 5003 dbSNP
rs898266107 5005 dbSNP
rs1293833936 5006 dbSNP
rs1019633585 5016 dbSNP
rs962207364 5020 dbSNP
rs972649701 5021 dbSNP
rs543769921 5024 dbSNP
rs969589907 5025 dbSNP
rs1027699577 5036 dbSNP
rs534159439 5037 dbSNP
rs563975195 5047 dbSNP
rs1275946888 5049 dbSNP
rs532619202 5057 dbSNP
rs1230087963 5066 dbSNP
rs1394290497 5067 dbSNP
rs147673174 5068 dbSNP
rs73198106 5071 dbSNP
rs1465267390 5072 dbSNP
rs1421699263 5074 dbSNP
rs1167398861 5075 dbSNP
rs187215179 5078 dbSNP
rs548648426 5083 dbSNP
rs568466467 5086 dbSNP
rs1186040364 5089 dbSNP
rs537399493 5093 dbSNP
rs142358950 5102 dbSNP
rs1052697069 5104 dbSNP
rs1198363417 5106 dbSNP
rs915113658 5107 dbSNP
rs1456733337 5108 dbSNP
rs146522397 5131 dbSNP
rs1215185531 5134 dbSNP
rs1356436538 5146 dbSNP
rs1283156404 5148 dbSNP
rs1242485989 5153 dbSNP
rs915315905 5159 dbSNP
rs1050196932 5160 dbSNP
rs1259331141 5163 dbSNP
rs538494630 5166 dbSNP
rs558710614 5168 dbSNP
rs1451564279 5169 dbSNP
rs139188107 5173 dbSNP
rs1008993453 5174 dbSNP
rs1384830771 5175 dbSNP
rs1161578353 5177 dbSNP
rs1442909846 5191 dbSNP
rs1216265042 5193 dbSNP
rs1364830016 5194 dbSNP
rs921100299 5197 dbSNP
rs540732172 5198 dbSNP
rs1255362641 5199 dbSNP
rs1051000859 5210 dbSNP
rs1451869054 5211 dbSNP
rs780191638 5214 dbSNP
rs191924031 5222 dbSNP
rs1207507648 5223 dbSNP
rs1351009457 5231 dbSNP
rs1453617133 5234 dbSNP
rs993803302 5239 dbSNP
rs1437421272 5246 dbSNP
rs745814019 5246 dbSNP
rs1330704073 5248 dbSNP
rs1321855442 5249 dbSNP
rs1361256322 5251 dbSNP
rs1158574163 5257 dbSNP
rs1418473287 5258 dbSNP
rs1397249004 5261 dbSNP
rs1391210211 5263 dbSNP
rs375691023 5267 dbSNP
rs952240552 5268 dbSNP
rs1297958056 5274 dbSNP
rs543378062 5276 dbSNP
rs898217707 5277 dbSNP
rs1012641311 5283 dbSNP
rs1045172778 5290 dbSNP
rs534879065 5291 dbSNP
rs1351481678 5293 dbSNP
rs1219541274 5299 dbSNP
rs1023021866 5304 dbSNP
rs1273233941 5309 dbSNP
rs1226145486 5310 dbSNP
rs971339465 5314 dbSNP
rs1433241247 5326 dbSNP
rs1341200657 5328 dbSNP
rs905360079 5332 dbSNP
rs981853399 5340 dbSNP
rs1377753274 5345 dbSNP
rs1177449765 5351 dbSNP
rs1214899800 5357 dbSNP
rs1423511197 5360 dbSNP
rs3178072 5363 dbSNP
rs1170440981 5367 dbSNP
rs3178073 5372 dbSNP
rs924676867 5383 dbSNP
rs1423693631 5384 dbSNP
rs957204630 5385 dbSNP
rs201249146 5387 dbSNP
rs1259456323 5388 dbSNP
rs183836131 5391 dbSNP
rs111767880 5392 dbSNP
rs145311527 5397 dbSNP
rs187320994 5398 dbSNP
rs988105103 5402 dbSNP
rs915059885 5405 dbSNP
rs546121771 5406 dbSNP
rs1050142259 5411 dbSNP
rs910311570 5414 dbSNP
rs578135741 5415 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uaguuccaggcgACACUUGUGc 5'
                      | ||||||| 
Target 5' -------uuauaUAUGAACACu 3'
 		1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 6542.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000494857.1 | 3UTR | AACACUCAAAUCUUUUACUGUAACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000494857.1 | 3UTR | UUAUAUAUGAACACUCAAAUCUUUUACUGUAACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000494857.1 | 3UTR | AACACUCAAAUCUUUUACUGUAACG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19350 CNS germ cell tumors -0.441 7.6e-2 -0.154 3.2e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.248 8.6e-2 0.207 1.3e-1 32 Click to see details
GSE28544 Breast cancer 0.2 1.7e-1 0.122 2.9e-1 24 Click to see details
GSE26953 Aortic valvular endothelial cells -0.197 1.8e-1 -0.157 2.3e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.152 2.4e-1 0.029 4.5e-1 23 Click to see details
GSE38226 Liver fibrosis 0.078 3.7e-1 -0.187 2.1e-1 21 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.06 4.0e-1 -0.326 8.0e-2 20 Click to see details
GSE28260 Renal cortex and medulla 0.077 4.0e-1 0.115 3.5e-1 13 Click to see details
GSE17498 Multiple myeloma 0.028 4.3e-1 -0.024 4.4e-1 40 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.017 4.7e-1 0.027 4.5e-1 25 Click to see details
GSE21687 Ependynoma primary tumors -0.004 4.9e-1 0.028 4.1e-1 64 Click to see details
GSE21687 Ependynoma primary tumors -0.004 4.9e-1 0.028 4.1e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
-0.004 4.9e-1 0.028 4.1e-1 64 Click to see details
-0.004 4.9e-1 0.028 4.1e-1 64 Click to see details
-0.004 4.9e-1 0.028 4.1e-1 64 Click to see details
65 hsa-miR-124-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT064177 KIAA1804 mitogen-activated protein kinase kinase kinase 21 2 2
MIRT069736 FOXG1 forkhead box G1 2 4
MIRT086429 NABP1 nucleic acid binding protein 1 2 6
MIRT105334 SLC7A2 solute carrier family 7 member 2 2 4
MIRT110455 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT172998 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT196428 TAOK1 TAO kinase 1 2 14
MIRT325704 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT365670 TSC22D3 TSC22 domain family member 3 2 4
MIRT365873 XIAP X-linked inhibitor of apoptosis 2 2
MIRT404126 ASB1 ankyrin repeat and SOCS box containing 1 2 2
MIRT404626 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT405284 ARF1 ADP ribosylation factor 1 2 2
MIRT406099 PAGR1 PAXIP1 associated glutamate rich protein 1 2 2
MIRT446627 SDC3 syndecan 3 2 2
MIRT446906 RGS5 regulator of G protein signaling 5 2 2
MIRT461790 FXR2 FMR1 autosomal homolog 2 2 2
MIRT463982 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT464204 VGLL4 vestigial like family member 4 2 2
MIRT472790 MTMR4 myotubularin related protein 4 2 4
MIRT473485 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT481124 AZIN1 antizyme inhibitor 1 2 4
MIRT485060 SUCO SUN domain containing ossification factor 2 2
MIRT487343 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT491948 VPS52 VPS52, GARP complex subunit 2 2
MIRT497208 CDH7 cadherin 7 2 2
MIRT497476 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT528203 NELFE negative elongation factor complex member E 2 2
MIRT529255 TRIM4 tripartite motif containing 4 2 4
MIRT530096 PSAPL1 prosaposin like 1 (gene/pseudogene) 2 2
MIRT530597 C7orf33 chromosome 7 open reading frame 33 2 4
MIRT534980 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT538326 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 2 2
MIRT561237 ZNF652 zinc finger protein 652 2 2
MIRT562035 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT563120 THAP5 THAP domain containing 5 2 2
MIRT563538 RBM41 RNA binding motif protein 41 2 2
MIRT566037 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT566505 PAWR pro-apoptotic WT1 regulator 2 2
MIRT566745 MRPL35 mitochondrial ribosomal protein L35 2 2
MIRT566850 LRRC58 leucine rich repeat containing 58 2 2
MIRT568077 CELF2 CUGBP Elav-like family member 2 2 2
MIRT576826 Tgfbr3 transforming growth factor, beta receptor III 2 2
MIRT608870 NR2E1 nuclear receptor subfamily 2 group E member 1 2 4
MIRT611997 VAC14 Vac14, PIKFYVE complex component 2 2
MIRT614054 FAM89A family with sequence similarity 89 member A 2 2
MIRT618800 SPATA21 spermatogenesis associated 21 2 2
MIRT619389 RSPH3 radial spoke head 3 homolog 2 2
MIRT622282 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT624026 EN2 engrailed homeobox 2 2 2
MIRT626000 MPEG1 macrophage expressed 1 2 2
MIRT641792 USP32 ubiquitin specific peptidase 32 2 2
MIRT651599 WDFY2 WD repeat and FYVE domain containing 2 2 2
MIRT659662 CDC73 cell division cycle 73 2 2
MIRT663010 KIAA1586 KIAA1586 2 2
MIRT663561 ASTN2 astrotactin 2 2 2
MIRT669312 C16orf72 chromosome 16 open reading frame 72 2 2
MIRT685216 POTED POTE ankyrin domain family member D 2 2
MIRT695757 ZNF117 zinc finger protein 117 2 2
MIRT697909 TXNRD1 thioredoxin reductase 1 2 2
MIRT707181 RPH3A rabphilin 3A 2 2
MIRT707214 TRIM13 tripartite motif containing 13 2 2
MIRT707478 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT719507 LMAN2L lectin, mannose binding 2 like 2 2
MIRT755814 PARP1 poly(ADP-ribose) polymerase 1 2 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-124 5-aminoimidazole-4-carboxamide-1-β-d-ribofuranoside (AICAR) NULL 16078949 Microarray hepatocytes 23107762 2013 up-regulated
miR-124 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 up-regulated
miR-124 Vorinostat (SAHA) approved 5311 Microarray A549 human non-small cell lung cancer cells 19513533 2009 up-regulated
miR-124 Cocaine NULL 446220 Quantitative real-time PCR HEK293 cells or rat brain parts 19703567 2009 down-regulated
miR-124 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-124 Chaihu Shugan San NULL NULL Microarray hippocampus 23947143 2013 up-regualted
miR-124 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-124 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-124-5p Paclitaxel 36314 NSC125973 approved resistant High Laryngeal Cancer cell line (Hep2)
hsa-miR-124-5p Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (MGC803)
hsa-miR-124-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-124-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-124-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-124-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-124-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-124-5p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-124-5p Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-124-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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