miRTarBase - #MIRT105530


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pre-miRNA Information
pre-miRNA hsa-mir-548f-1   
Genomic Coordinates chr10: 54607874 - 54607957
Synonyms MIR548F-1, MIRN548F1, hsa-mir-548f-1, MIR548F1
Description Homo sapiens miR-548f-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-2   
Genomic Coordinates chr2: 212426263 - 212426360
Synonyms MIR548F-2, MIRN548F2, hsa-mir-548f-2, MIR548F2
Description Homo sapiens miR-548f-2 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-3   
Genomic Coordinates chr5: 110513829 - 110513915
Synonyms MIR548F-3, MIRN548F3, hsa-mir-548f-3, MIR548F3
Description Homo sapiens miR-548f-3 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-4   
Genomic Coordinates chr7: 147378017 - 147378121
Synonyms MIR548F-4, MIRN548F4, hsa-mir-548f-4, MIR548F4
Description Homo sapiens miR-548f-4 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-548f-5   
Genomic Coordinates chrX: 32641474 - 32641559
Synonyms MIR548F-5, MIRN548F5, hsa-mir-548f-5, MIR548F5
Description Homo sapiens miR-548f-5 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548f-3p
Sequence 59| AAAAACUGUAAUUACUUUU |77
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 10 - 54607905 29233923 MiREDiBase
A-to-I 4 10 - 54607904 29233923 MiREDiBase
A-to-I 5 10 - 54607903 29233923 MiREDiBase
A-to-I 10 10 - 54607898 29233923 MiREDiBase
A-to-I 3 2 - 212426300 29233923 MiREDiBase
A-to-I 4 2 - 212426299 29233923 MiREDiBase
A-to-I 5 2 - 212426298 29233923 MiREDiBase
A-to-I 3 5 - 110513860 29233923 MiREDiBase
A-to-I 4 5 - 110513859 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26988089 5 COSMIC
COSN30456990 6 COSMIC
COSN15625252 6 COSMIC
COSN31522782 7 COSMIC
COSN31545996 8 COSMIC
COSN31570212 9 COSMIC
COSN1084275 12 COSMIC
COSN15625251 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs966876049 1 dbSNP
rs1321394893 2 dbSNP
rs923504759 3 dbSNP
rs1168522027 5 dbSNP
rs1187070531 5 dbSNP
rs1485986292 6 dbSNP
rs776299100 6 dbSNP
rs1421488925 6 dbSNP
rs748224431 6 dbSNP
rs1262049804 7 dbSNP
rs1258250226 7 dbSNP
rs568151991 8 dbSNP
rs1233367754 8 dbSNP
rs778777095 9 dbSNP
rs760758823 9 dbSNP
rs1330282349 10 dbSNP
rs749737324 10 dbSNP
rs760103713 10 dbSNP
rs754285569 10 dbSNP
rs756628155 10 dbSNP
rs1380895949 10 dbSNP
rs768673400 12 dbSNP
rs1478761955 13 dbSNP
rs1437534303 15 dbSNP
rs749009182 15 dbSNP
rs773271422 15 dbSNP
rs747569615 15 dbSNP
rs779944053 16 dbSNP
rs771761319 16 dbSNP
rs1159501553 18 dbSNP
rs757404662 19 dbSNP
rs1191871489 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ENTPD4   
Synonyms LALP70, LAP70, LYSAL1, NTPDase-4, UDPase
Description ectonucleoside triphosphate diphosphohydrolase 4
Transcript NM_001128930   
Other Transcripts NM_004901   
Expression
Putative miRNA Targets on ENTPD4
3'UTR of ENTPD4
(miRNA target sites are highlighted)		 
>ENTPD4|NM_001128930|3'UTR
   1 TCCAGCTCACAGCTCCACGAAGACTCAAAAGGAAAAGCCATTTTTGCCTCAGGGTTTCTCCTCTTTATTTTCCTGTGGTT
  81 TTGTTTTTTCTTTCCCTTTTTTGTTCCTCCAAACAAAAACAAAATGCAGGCCGAGCGCGGTGGCTCACGCCTGTAATCCC
 161 AGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTC
 241 TCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGCGCCCGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAG
 321 AATGGCATGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGTGAGA
 401 CTCCGTCTCAAAAAAAAAAAATGCATTGTTTATAAGCCCTGCTGTCTAGAAGTATTGCGTTTAGCCATTTTGAGTACAGC
 481 ATTAAATTGAGGAGTGGGGAAGAGGGAAATTCACTTGATTTTTGCTGCACAGGATATCTGCCAAAAATAAATGAGATTTC
 561 TGGGGTTTCTCTAAGGAATGTTAAATTTAAACACATGCACTTTGATACTGGAGGGAGGTGGAAAGATGCATTCTGTCAGT
 641 GGAGAGGGGACTGAATAGTGATGCTTTCATAGAACCAAAAAACTTACTGCCTGAAATGATAATCCTCTTTTTTCTCTATC
 721 TTGAAAGCTCTAACCTGAAGAGGGTGATTTTTTTTTTTATTTATTGTTCAGGTCTGTTACTGTATATGTTTTCTTTGCAA
 801 ATTTAAATTTTTTAAACCATTTATATCCAAAACAGAGAAACATGGGCACCAGGAGATAACCATTTATAAAAGTGATAGTG
 881 AACTATCGACTACAGCTTTGTGCGAGTGTGTGAAAAATCCCAAGAAACCAGCGTGAGGGGAGGCAATGCTGGTTCTTTAA
 961 AAACACACACTTCAGAATTTACTGGTACATTTTATTTAGAAAAATCCTCGTTACTGTTATCTTTTCCTGACCGCAGGTAA
1041 TTACGCTCCTTATTCCATATTTCAGTGGCATTAGAACACTGTGGTTTTGAAAGAATTGGAAATTCCTAGTTTCACCAGTT
1121 TCGGTTTTATTGGAACTAGAGCACATGCCCACTTCTTGCTCAGTATTCCTCAGTGTTTCTGCTTAATCGTGCCTCAGTTT
1201 CTTCCAGCTTCCAATTGGTGTTTCCCCCACCCCCCTTAATTAAAAGTCATCTCAGCTTTTAATCGTACTGGGAGACCCCA
1281 TGCACAGCCTGCCGAGTCCTCTTCCTAACCGCATTGACTGAGGCTGTTGCTGGCAGCACCACTGTAAATCCAGAAGGGAA
1361 GAGTCTGCATCCAATACAGGAAATAAATTCACATTTTGAAGGAAAAAATTCGACAATTTAAGCCAAAATCTAAAAAGGAC
1441 AATTGGATTGGCATATGTGAGATTGGTGTTTTTTCACCTATTTATTTAGTTGAGAAGTTTGGGGAATTCTCGTACAGTTT
1521 TTTTAGGTGGAGTTTGTTTTGTGCGAGTGTCTGTGTGTGCTGTTCCCTAACTCCAGAACAGTTAAATTCCTGTAGTTGGT
1601 AGCAGATTAGTACCCAGAAGTGGGGTTGTTGCTATAACAGATAACTGAGGATATTATAAAAGTGGCTTTGGAACTAGGTA
1681 CTGGGCAGAGGCTGGGAGAGTTTGGAGAAACAGGAGAGAAAAGGCCTGTATTGCCATGAACTGAGCATTAGGGGCAGTTC
1761 TGCTGAGGGATCAGAAGAGAAGACCAAGGGAATTCTGTCCCAGTTGTGGCTCAAACTGCCTCAGGTGCAGCTTAACCTGC
1841 GTCTCTGGAAGGTAAAATGCATCTGATCCTTGAGGCAAGAGCTGTGGGGGCATGGCTCCCTCACCTGGATTTCAAAGCGT
1921 GTTACCAGCAGCCTGGGGACCCAGGCTCTGCCTCTGGATTTACCTGCATCGTATTTGCGCTTCGTGGTCAAAGTTGTTAA
2001 GAAAGGGGTGAGCTTCTGGCTACCTAATAAGTTGGTCTTGGCCACCTGCCTGCGACACTTCCTGGAGGAGCCATGGATTA
2081 TTGGTGGAGGCTGCAGGGAGCTGGCGATGGAGCCACTGGTGTCAGCAGCAGAGAGGGAAGAAAGGAAAGGAAGGGGCCAC
2161 AAATGGTTGAAGTGGGCAGGTGGGCACCCAGGGAGTTAGGGGACCCCGCCTTCCAGCTCTGGGCATAGAAGAGTTAGTCA
2241 CATACCTGAGGATCCTGAAACAAGGGCTGAGAAAACCTCATTGCTCCAGCTGAGAGGTAGTAGTGGATTTGCCATTTTTA
2321 AACAGTTGCCTAAGAAAAAACGTTGAAGAATATGCAGCAGACACTATATGTGGCCTGTAAAGCCTAGAATATTTACTAAA
2401 ATATTTACAGAAAAAGTTTGCTGGTCCTTGTGAGAACAATGCAGTTCAAAAAAGGATACAGACAGAAGCATCCTCTTAAA
2481 TCAGGAATGTAGTTTCCATTTGTGGGCACGAAAAGATGGACAAGAGAAGTAACCAAACTTCAATCTTAAAATATTTGTTG
2561 CACCAGAATTTCACTTCGGATTTTTCCGTCTAGATTATTTTCAAGATGAGTTTTGAAACAAACCAAGAAACCTGCCCCTC
2641 ACCCAAAATTGTTTAAAAAGAGACCACTCAAGGGAGTTCATTATGCCGTATGGAGATGTCTGCAGTCGCAGCAAATCACA
2721 TTCCAGAGAAGGTCTCGCGTAGGTGAAGACAGCCAGGTGCTTTCTCTAAGAGATACAGGGTGGGTGAGAGACAAGCCAGG
2801 GAGGATCTTAATTCAAGAGAAGAATTCATACCAAGAGCTGACCAAGAAGGCAGTAAATTCTGTGTACTTGTAGCAGAAGA
2881 AATTGGACTAGGAACTTGCCCAAAGCTTTATCAAAGAAAAGCATTGTGTTCAATCTTGGTAGAAACATGCCAGCAATAAG
2961 TGCTTATGTTCCATAGCCATATCATGGGCTTCTCACTTTTAAACCTCCTCCAGGGGATGTTCTCAGACATTTCACAATCC
3041 CTCTGGGGACATTACAGTAGAAGAGAAACACATGGAACTGTACCAGTGCTTTTTGCCCATGTTCATCCTAAGCTCCGGCT
3121 TTAGGCAGTGCTTTCTGACCTGGGCGGAGTGAAGACGCTGCTGGTGGCTGAGGCCAGTAACATGGGGCCCCTGCCCAGCC
3201 ACCCTGAAGGCTGGGTAGGTCCCTCTTTTCACCACCAGTTTTCCACATCTGTGTACTCTAGATTAACAAACTCTGGATAA
3281 ACAGATATTTACATTTTAAACTCAGGCCTACACAGAGTAGTTTTCCTTATAAGGAGCATGTATCACTTAGCAAGAAACTA
3361 AAAATGGCAAATGAGTTTTTCATCCTTTAAGAAAAAAATCAGCTTTAGAATTCTCTGCGGTCAGTTGTGTGCAATGCAAC
3441 AAAACTACCTTTCAGTAAATTACTTAGTTATTTATTTCAGTGTTTTGTTTCTTTTGATACTAAGTTTCCCTTTCAATAAT
3521 GAATGATGTGACCAACCAAGGAGAATTTGTTTGTTCTGTACTAAAATTATATTTTACAGTTAGGAATTATAAAAAGCAAG
3601 GGAGCATCTTTAAATGTTTTTTGTTTAAGCGATGTCTTCCATCCAAAGTAAGAATAATACTCTCGGAAGGTCCTTTTGGT
3681 GTCATGTCACTTGCTGTATGTGGCAGCCTTACAGTGCCACACTTGGGTACTGAAAAATCAATAAAACGAAAGTTCATCAT
3761 CCCATGGCCCGTAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuUUCAUUA-----AUGUCAAAAa 5'
            ::| |||     ||||||||| 
Target 5' ttGGGGAATTCTCGTACAGTTTTt 3'
 1499 - 1522 153.00 -9.50
2 
miRNA  3' uuuucaUUAAUGUCAAAAa 5'
                |:|| |:||||| 
Target 5' ttcaccAGTTTCGGTTTTa 3'
 1111 - 1129 137.00 -5.10
3 
miRNA  3' uuUUCAUUAAUGUCAAAAa 5'
            |||| ||  ||| ||| 
Target 5' aaAAGTCATCTCAGCTTTt 3'
 1242 - 1260 129.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30127300 4 COSMIC
COSN14336346 19 COSMIC
COSN31522380 31 COSMIC
COSN31548268 63 COSMIC
COSN31605436 63 COSMIC
COSN30135187 92 COSMIC
COSN20496019 359 COSMIC
COSN20105284 409 COSMIC
COSN9459225 613 COSMIC
COSN32061537 748 COSMIC
COSN29389758 1114 COSMIC
COSN25432631 1600 COSMIC
COSN4923335 1753 COSMIC
COSN8077627 2009 COSMIC
COSN17975080 2093 COSMIC
COSN18985742 2302 COSMIC
COSN32020014 2450 COSMIC
COSN9259753 2494 COSMIC
COSN19294601 2606 COSMIC
COSN19294541 2659 COSMIC
COSN26390135 2708 COSMIC
COSN26658405 3027 COSMIC
COSN22593117 3418 COSMIC
COSN27090898 3484 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs533879942 1 dbSNP
rs1309612180 3 dbSNP
rs1427523467 5 dbSNP
rs370967876 8 dbSNP
rs1389329246 10 dbSNP
rs376465431 13 dbSNP
rs1225093299 14 dbSNP
rs752151301 17 dbSNP
rs1311397726 18 dbSNP
rs780475296 18 dbSNP
rs201075031 19 dbSNP
rs1253066764 23 dbSNP
rs1180230956 24 dbSNP
rs754593207 26 dbSNP
rs1046443934 29 dbSNP
rs1253240417 32 dbSNP
rs1331776895 37 dbSNP
rs751275484 38 dbSNP
rs1482239334 40 dbSNP
rs1467415132 46 dbSNP
rs548817345 48 dbSNP
rs1248721912 55 dbSNP
rs908953004 58 dbSNP
rs942307847 60 dbSNP
rs769692133 67 dbSNP
rs1432978565 72 dbSNP
rs1174555422 73 dbSNP
rs1341468020 87 dbSNP
rs889456576 88 dbSNP
rs1306710106 91 dbSNP
rs1168094327 92 dbSNP
rs1368814557 94 dbSNP
rs1050807690 96 dbSNP
rs1389361123 97 dbSNP
rs1375067414 103 dbSNP
rs1366629241 104 dbSNP
rs530301042 105 dbSNP
rs958320126 116 dbSNP
rs933748231 117 dbSNP
rs1308175822 121 dbSNP
rs1227608295 125 dbSNP
rs569480085 126 dbSNP
rs1360983139 127 dbSNP
rs1222692754 130 dbSNP
rs575808542 132 dbSNP
rs1189877821 133 dbSNP
rs60497420 135 dbSNP
rs61390254 136 dbSNP
rs958240075 137 dbSNP
rs565289231 138 dbSNP
rs1349558003 140 dbSNP
rs1456182119 149 dbSNP
rs1363056726 151 dbSNP
rs1290368510 161 dbSNP
rs980330144 173 dbSNP
rs1184614409 175 dbSNP
rs969993940 176 dbSNP
rs1024279348 177 dbSNP
rs1417622597 180 dbSNP
rs992846355 181 dbSNP
rs368575254 182 dbSNP
rs540215421 185 dbSNP
rs144973738 186 dbSNP
rs903690643 187 dbSNP
rs981453592 188 dbSNP
rs1208637073 190 dbSNP
rs1246799495 191 dbSNP
rs1022179859 192 dbSNP
rs971837745 197 dbSNP
rs561009712 201 dbSNP
rs889425339 206 dbSNP
rs1422247663 207 dbSNP
rs1161562876 211 dbSNP
rs1055518476 220 dbSNP
rs1319047921 226 dbSNP
rs1288595846 227 dbSNP
rs937086794 229 dbSNP
rs928262203 234 dbSNP
rs981501804 235 dbSNP
rs1376378651 236 dbSNP
rs1225043050 237 dbSNP
rs1403913852 237 dbSNP
rs1330240588 238 dbSNP
rs541653918 242 dbSNP
rs1208540134 245 dbSNP
rs1050736891 246 dbSNP
rs1266758077 251 dbSNP
rs933694965 261 dbSNP
rs1304403024 269 dbSNP
rs574269454 270 dbSNP
rs185704643 276 dbSNP
rs1482327363 278 dbSNP
rs896895719 282 dbSNP
rs1413058223 283 dbSNP
rs4872135 286 dbSNP
rs577019991 287 dbSNP
rs1431189791 288 dbSNP
rs1414930619 294 dbSNP
rs958167915 296 dbSNP
rs558547175 307 dbSNP
rs1160222390 309 dbSNP
rs866205253 314 dbSNP
rs189128330 315 dbSNP
rs1030443146 316 dbSNP
rs1226214346 326 dbSNP
rs1286809546 328 dbSNP
rs1326114450 332 dbSNP
rs1220262813 334 dbSNP
rs1201089192 341 dbSNP
rs1310509792 345 dbSNP
rs1452754022 356 dbSNP
rs111851628 358 dbSNP
rs1138445 359 dbSNP
rs917530309 362 dbSNP
rs1482821612 368 dbSNP
rs1466557771 374 dbSNP
rs1013256827 375 dbSNP
rs1269114088 383 dbSNP
rs55894164 388 dbSNP
rs370603221 389 dbSNP
rs1423027367 393 dbSNP
rs1411131734 395 dbSNP
rs1032136635 396 dbSNP
rs1276173539 397 dbSNP
rs1233321041 398 dbSNP
rs1226411232 399 dbSNP
rs550854645 402 dbSNP
rs1325292142 404 dbSNP
rs1333181056 405 dbSNP
rs1437709409 406 dbSNP
rs1293355491 407 dbSNP
rs1383809616 408 dbSNP
rs369303343 409 dbSNP
rs398073241 409 dbSNP
rs1343547969 415 dbSNP
rs1335805291 419 dbSNP
rs1469543707 420 dbSNP
rs11403204 422 dbSNP
rs1203211691 422 dbSNP
rs1341550505 422 dbSNP
rs33928899 422 dbSNP
rs34507802 422 dbSNP
rs978870643 423 dbSNP
rs532843241 427 dbSNP
rs887581121 428 dbSNP
rs1055654513 429 dbSNP
rs867954708 431 dbSNP
rs937186783 439 dbSNP
rs113957461 442 dbSNP
rs906944120 446 dbSNP
rs1372539188 447 dbSNP
rs1406295420 448 dbSNP
rs1323245671 449 dbSNP
rs534610800 458 dbSNP
rs1006756497 459 dbSNP
rs1364530214 466 dbSNP
rs1249072529 475 dbSNP
rs1286154754 477 dbSNP
rs1357261592 487 dbSNP
rs988771783 487 dbSNP
rs1287391999 501 dbSNP
rs936945732 514 dbSNP
rs1448536511 517 dbSNP
rs1209267700 519 dbSNP
rs1247419421 524 dbSNP
rs1447094741 524 dbSNP
rs889688101 532 dbSNP
rs1029625193 537 dbSNP
rs1061293 538 dbSNP
rs896827459 547 dbSNP
rs1472235798 555 dbSNP
rs1200608345 560 dbSNP
rs1161098459 564 dbSNP
rs1388950651 565 dbSNP
rs1459208181 567 dbSNP
rs986246750 570 dbSNP
rs1338215644 571 dbSNP
rs546602683 576 dbSNP
rs1037150090 586 dbSNP
rs1230571450 590 dbSNP
rs1005321376 598 dbSNP
rs888587058 600 dbSNP
rs923346510 601 dbSNP
rs1244266501 605 dbSNP
rs976194621 610 dbSNP
rs1044531777 614 dbSNP
rs1450201409 618 dbSNP
rs948914570 620 dbSNP
rs917489321 623 dbSNP
rs1336439106 634 dbSNP
rs528450127 635 dbSNP
rs1441347321 637 dbSNP
rs934616566 640 dbSNP
rs1365250364 645 dbSNP
rs1473758673 658 dbSNP
rs1160300339 664 dbSNP
rs561072424 674 dbSNP
rs979225340 675 dbSNP
rs1166196207 678 dbSNP
rs1456051739 680 dbSNP
rs1305128405 683 dbSNP
rs1402988148 687 dbSNP
rs968775570 690 dbSNP
rs1395597622 699 dbSNP
rs951923996 709 dbSNP
rs147840534 714 dbSNP
rs1410687031 718 dbSNP
rs542707184 719 dbSNP
rs985288677 734 dbSNP
rs530870339 742 dbSNP
rs1235248422 744 dbSNP
rs1183453594 747 dbSNP
rs1256575518 755 dbSNP
rs536838792 757 dbSNP
rs907036980 758 dbSNP
rs1198268866 759 dbSNP
rs1434534261 759 dbSNP
rs372491459 759 dbSNP
rs796488493 759 dbSNP
rs1045857213 761 dbSNP
rs1369328999 766 dbSNP
rs953895067 775 dbSNP
rs1378763549 782 dbSNP
rs1465591854 784 dbSNP
rs568155422 797 dbSNP
rs1372518693 805 dbSNP
rs1054028808 807 dbSNP
rs1430565461 808 dbSNP
rs1307669224 823 dbSNP
rs1348379782 832 dbSNP
rs1187840508 833 dbSNP
rs868312718 842 dbSNP
rs1301858577 844 dbSNP
rs935700067 844 dbSNP
rs925532444 847 dbSNP
rs1231018625 853 dbSNP
rs1276073282 854 dbSNP
rs1342273827 859 dbSNP
rs1203988149 866 dbSNP
rs1272124331 870 dbSNP
rs1050676238 872 dbSNP
rs768341725 876 dbSNP
rs1193339084 879 dbSNP
rs1268517179 880 dbSNP
rs1433068069 885 dbSNP
rs544050977 888 dbSNP
rs775048982 894 dbSNP
rs1430547231 895 dbSNP
rs1168190751 900 dbSNP
rs1342181718 900 dbSNP
rs1368991566 902 dbSNP
rs7843529 903 dbSNP
rs565116191 904 dbSNP
rs1005206210 905 dbSNP
rs746241363 907 dbSNP
rs1384950773 926 dbSNP
rs190330817 929 dbSNP
rs1365289866 931 dbSNP
rs779436500 932 dbSNP
rs540260746 933 dbSNP
rs1335390244 953 dbSNP
rs1221886392 958 dbSNP
rs1306319176 966 dbSNP
rs1266332917 975 dbSNP
rs1488365533 980 dbSNP
rs1411752578 982 dbSNP
rs1212349212 989 dbSNP
rs1250515303 1002 dbSNP
rs1034228390 1004 dbSNP
rs1417487358 1005 dbSNP
rs1371169391 1009 dbSNP
rs776624409 1010 dbSNP
rs1163541504 1013 dbSNP
rs17089243 1019 dbSNP
rs1459743837 1020 dbSNP
rs141362003 1032 dbSNP
rs532682211 1033 dbSNP
rs895989225 1035 dbSNP
rs1057498327 1040 dbSNP
rs934940485 1041 dbSNP
rs1380711141 1044 dbSNP
rs1164196153 1045 dbSNP
rs1311636989 1047 dbSNP
rs1367218951 1048 dbSNP
rs1321489503 1053 dbSNP
rs924885115 1054 dbSNP
rs1231885543 1056 dbSNP
rs1043043577 1060 dbSNP
rs947408852 1067 dbSNP
rs891529162 1068 dbSNP
rs1208655444 1070 dbSNP
rs1240372401 1072 dbSNP
rs536360521 1073 dbSNP
rs986223264 1084 dbSNP
rs953820780 1089 dbSNP
rs571420390 1095 dbSNP
rs1413398234 1096 dbSNP
rs1267500648 1104 dbSNP
rs1054169732 1106 dbSNP
rs1161048948 1108 dbSNP
rs184657978 1122 dbSNP
rs77552170 1123 dbSNP
rs961307394 1135 dbSNP
rs777815617 1136 dbSNP
rs1301866416 1144 dbSNP
rs144479911 1144 dbSNP
rs1348201282 1145 dbSNP
rs1286685927 1150 dbSNP
rs569222399 1168 dbSNP
rs1351206045 1171 dbSNP
rs756251998 1172 dbSNP
rs1228305083 1174 dbSNP
rs1282851063 1181 dbSNP
rs923411498 1188 dbSNP
rs191281160 1189 dbSNP
rs1237004250 1198 dbSNP
rs1484793421 1207 dbSNP
rs940883831 1208 dbSNP
rs534740864 1212 dbSNP
rs1352109419 1215 dbSNP
rs1324720489 1219 dbSNP
rs1472173863 1219 dbSNP
rs1400496799 1224 dbSNP
rs984875765 1230 dbSNP
rs895942567 1232 dbSNP
rs930596778 1233 dbSNP
rs567310264 1234 dbSNP
rs1431192025 1235 dbSNP
rs1160958762 1236 dbSNP
rs927291014 1237 dbSNP
rs752884879 1255 dbSNP
rs186472754 1262 dbSNP
rs1278274565 1263 dbSNP
rs758159801 1264 dbSNP
rs947337106 1265 dbSNP
rs971318788 1267 dbSNP
rs1024669601 1269 dbSNP
rs1275698419 1278 dbSNP
rs750212589 1293 dbSNP
rs889123284 1294 dbSNP
rs531058209 1298 dbSNP
rs765152904 1299 dbSNP
rs3115066 1301 dbSNP
rs1478292095 1306 dbSNP
rs184024740 1310 dbSNP
rs923380606 1311 dbSNP
rs1450867913 1313 dbSNP
rs1168807803 1314 dbSNP
rs1369617252 1316 dbSNP
rs976596969 1320 dbSNP
rs73551657 1322 dbSNP
rs879848901 1326 dbSNP
rs758146573 1335 dbSNP
rs998283584 1335 dbSNP
rs115167235 1340 dbSNP
rs1041065015 1354 dbSNP
rs1341661123 1355 dbSNP
rs940829432 1356 dbSNP
rs1291674770 1360 dbSNP
rs776780153 1365 dbSNP
rs886614540 1367 dbSNP
rs763669345 1376 dbSNP
rs952356178 1387 dbSNP
rs1220737393 1389 dbSNP
rs1251108047 1398 dbSNP
rs1275995778 1399 dbSNP
rs1188590449 1400 dbSNP
rs17089242 1400 dbSNP
rs1474186360 1408 dbSNP
rs772581433 1411 dbSNP
rs1406381607 1412 dbSNP
rs930731252 1413 dbSNP
rs142283082 1427 dbSNP
rs775159163 1432 dbSNP
rs1321257590 1438 dbSNP
rs1325936971 1442 dbSNP
rs1225444931 1443 dbSNP
rs573136345 1451 dbSNP
rs1286242281 1452 dbSNP
rs1322938106 1453 dbSNP
rs771654194 1455 dbSNP
rs1457508651 1456 dbSNP
rs191542982 1461 dbSNP
rs542616433 1465 dbSNP
rs1232504708 1478 dbSNP
rs369823136 1479 dbSNP
rs188767140 1480 dbSNP
rs1209278380 1484 dbSNP
rs1246810743 1489 dbSNP
rs1444843142 1490 dbSNP
rs1021846907 1496 dbSNP
rs1189188680 1498 dbSNP
rs376406097 1512 dbSNP
rs1416187086 1513 dbSNP
rs1459224322 1515 dbSNP
rs749789830 1516 dbSNP
rs1160570337 1517 dbSNP
rs1011854588 1518 dbSNP
rs778291028 1521 dbSNP
rs756164049 1522 dbSNP
rs1336375175 1525 dbSNP
rs368477555 1525 dbSNP
rs955867628 1526 dbSNP
rs1032821330 1527 dbSNP
rs1291136235 1529 dbSNP
rs933342854 1541 dbSNP
rs7842651 1544 dbSNP
rs1036889987 1545 dbSNP
rs1260146079 1549 dbSNP
rs1028058480 1557 dbSNP
rs1201727699 1560 dbSNP
rs900837346 1565 dbSNP
rs939828121 1573 dbSNP
rs1185354134 1580 dbSNP
rs1255780364 1600 dbSNP
rs1473809612 1616 dbSNP
rs1183494398 1625 dbSNP
rs1363774154 1626 dbSNP
rs553290848 1630 dbSNP
rs908387186 1631 dbSNP
rs561209453 1632 dbSNP
rs1005557717 1635 dbSNP
rs931216100 1636 dbSNP
rs915851901 1645 dbSNP
rs373855843 1655 dbSNP
rs960008811 1664 dbSNP
rs1363641579 1666 dbSNP
rs1352097720 1671 dbSNP
rs1410254811 1686 dbSNP
rs1306180097 1711 dbSNP
rs1333861070 1713 dbSNP
rs1235369301 1718 dbSNP
rs1274856052 1725 dbSNP
rs1346541603 1727 dbSNP
rs1208262093 1729 dbSNP
rs930825909 1736 dbSNP
rs1436290241 1743 dbSNP
rs1196697920 1747 dbSNP
rs1250292447 1751 dbSNP
rs905936678 1754 dbSNP
rs1035411662 1757 dbSNP
rs1201659966 1759 dbSNP
rs769133710 1771 dbSNP
rs1453929414 1772 dbSNP
rs1171980305 1774 dbSNP
rs73551653 1800 dbSNP
rs567592877 1806 dbSNP
rs967549518 1807 dbSNP
rs750172869 1808 dbSNP
rs1021815920 1812 dbSNP
rs10113258 1814 dbSNP
rs1388389457 1818 dbSNP
rs1301967885 1825 dbSNP
rs1490894264 1829 dbSNP
rs537037963 1830 dbSNP
rs55645624 1832 dbSNP
rs1342384191 1834 dbSNP
rs1029289853 1836 dbSNP
rs997520939 1837 dbSNP
rs753808368 1840 dbSNP
rs901851192 1841 dbSNP
rs953914827 1844 dbSNP
rs1427815817 1847 dbSNP
rs1429273298 1852 dbSNP
rs1036423131 1866 dbSNP
rs1170025304 1877 dbSNP
rs1005388955 1884 dbSNP
rs887889923 1885 dbSNP
rs563952685 1886 dbSNP
rs1393577201 1887 dbSNP
rs1438661057 1888 dbSNP
rs193293313 1891 dbSNP
rs915820824 1892 dbSNP
rs1381287473 1898 dbSNP
rs565085663 1899 dbSNP
rs1180391351 1907 dbSNP
rs965045203 1908 dbSNP
rs1247511361 1914 dbSNP
rs1484343369 1918 dbSNP
rs938321401 1919 dbSNP
rs544767645 1923 dbSNP
rs977170189 1925 dbSNP
rs767141819 1929 dbSNP
rs147863557 1938 dbSNP
rs759099295 1945 dbSNP
rs1259963704 1954 dbSNP
rs1277398196 1964 dbSNP
rs1165328629 1970 dbSNP
rs1027940209 1971 dbSNP
rs1459755897 1975 dbSNP
rs914350080 1978 dbSNP
rs1359207622 1979 dbSNP
rs561132103 1983 dbSNP
rs774117678 1984 dbSNP
rs994998886 1985 dbSNP
rs1380832149 1986 dbSNP
rs1396284503 1990 dbSNP
rs780606863 2007 dbSNP
rs1379440823 2008 dbSNP
rs1355241697 2012 dbSNP
rs1231988296 2013 dbSNP
rs1297160662 2014 dbSNP
rs61745334 2022 dbSNP
rs1044454051 2023 dbSNP
rs1215097897 2026 dbSNP
rs142296309 2028 dbSNP
rs895794963 2032 dbSNP
rs1188938964 2034 dbSNP
rs148740800 2035 dbSNP
rs966040606 2036 dbSNP
rs773660994 2037 dbSNP
rs1015324290 2038 dbSNP
rs1184212550 2042 dbSNP
rs1423900838 2043 dbSNP
rs1400071325 2053 dbSNP
rs1004907008 2054 dbSNP
rs113850166 2056 dbSNP
rs867012143 2060 dbSNP
rs1425835712 2061 dbSNP
rs1311954806 2063 dbSNP
rs542476860 2064 dbSNP
rs748188562 2065 dbSNP
rs1414811040 2068 dbSNP
rs1181652214 2070 dbSNP
rs1375218731 2070 dbSNP
rs386723571 2070 dbSNP
rs144302827 2071 dbSNP
rs528687506 2071 dbSNP
rs894315339 2073 dbSNP
rs544765869 2077 dbSNP
rs61744075 2093 dbSNP
rs1304887949 2101 dbSNP
rs1314077643 2103 dbSNP
rs1211859751 2106 dbSNP
rs1279928295 2119 dbSNP
rs1490321219 2142 dbSNP
rs1206965031 2144 dbSNP
rs1233277812 2148 dbSNP
rs1264125339 2151 dbSNP
rs976503946 2151 dbSNP
rs1247425121 2153 dbSNP
rs938615454 2163 dbSNP
rs1426649239 2165 dbSNP
rs928592074 2172 dbSNP
rs1373290551 2173 dbSNP
rs908313141 2176 dbSNP
rs1355492020 2178 dbSNP
rs1442097221 2180 dbSNP
rs1297029494 2181 dbSNP
rs1373246228 2184 dbSNP
rs747171316 2185 dbSNP
rs1235176506 2195 dbSNP
rs780475570 2200 dbSNP
rs553174368 2201 dbSNP
rs952393111 2207 dbSNP
rs945727153 2208 dbSNP
rs914320606 2210 dbSNP
rs1351848553 2215 dbSNP
rs995097176 2222 dbSNP
rs989900105 2225 dbSNP
rs932101918 2233 dbSNP
rs1202353178 2235 dbSNP
rs970187985 2246 dbSNP
rs1308078828 2248 dbSNP
rs1404327051 2265 dbSNP
rs1192409153 2274 dbSNP
rs1392729766 2283 dbSNP
rs541195291 2286 dbSNP
rs1168195591 2297 dbSNP
rs764817379 2305 dbSNP
rs1420662362 2307 dbSNP
rs1409789028 2310 dbSNP
rs757073532 2314 dbSNP
rs1014448616 2332 dbSNP
rs115273243 2341 dbSNP
rs1325231540 2342 dbSNP
rs555621143 2344 dbSNP
rs966683926 2350 dbSNP
rs1271060951 2357 dbSNP
rs1158737962 2359 dbSNP
rs1212638737 2363 dbSNP
rs1291791921 2365 dbSNP
rs1053242673 2367 dbSNP
rs998810724 2373 dbSNP
rs1250581138 2396 dbSNP
rs1015212308 2398 dbSNP
rs1465915285 2415 dbSNP
rs188759094 2419 dbSNP
rs114374719 2423 dbSNP
rs1182984849 2426 dbSNP
rs1241205753 2428 dbSNP
rs1433173916 2434 dbSNP
rs758222074 2439 dbSNP
rs1042925782 2440 dbSNP
rs1420483193 2441 dbSNP
rs932587968 2443 dbSNP
rs1164907217 2444 dbSNP
rs899771020 2449 dbSNP
rs1402566720 2462 dbSNP
rs558092372 2473 dbSNP
rs1212111303 2481 dbSNP
rs539554652 2492 dbSNP
rs1027662274 2494 dbSNP
rs540993894 2498 dbSNP
rs1267868317 2506 dbSNP
rs1012299829 2509 dbSNP
rs183209260 2510 dbSNP
rs1406285150 2515 dbSNP
rs1034578512 2517 dbSNP
rs982529381 2522 dbSNP
rs1352181130 2523 dbSNP
rs1002738198 2533 dbSNP
rs1282977740 2535 dbSNP
rs546831784 2536 dbSNP
rs1189209912 2538 dbSNP
rs919608188 2543 dbSNP
rs1475779587 2545 dbSNP
rs1187824242 2554 dbSNP
rs1416403157 2557 dbSNP
rs1041673768 2563 dbSNP
rs1471456004 2572 dbSNP
rs945653463 2573 dbSNP
rs973629200 2574 dbSNP
rs892812571 2577 dbSNP
rs1365804459 2578 dbSNP
rs1413989318 2579 dbSNP
rs1054184537 2582 dbSNP
rs931704326 2587 dbSNP
rs1337418321 2588 dbSNP
rs1239683204 2594 dbSNP
rs1023245798 2597 dbSNP
rs1222384201 2597 dbSNP
rs993399105 2603 dbSNP
rs1328779791 2604 dbSNP
rs765476077 2605 dbSNP
rs528280251 2606 dbSNP
rs1280652267 2621 dbSNP
rs1486191119 2626 dbSNP
rs1210552854 2631 dbSNP
rs1254550665 2633 dbSNP
rs1439995423 2638 dbSNP
rs1183236446 2642 dbSNP
rs752739486 2643 dbSNP
rs1175733341 2651 dbSNP
rs1387233183 2653 dbSNP
rs1395863437 2661 dbSNP
rs1384040580 2662 dbSNP
rs1318263955 2664 dbSNP
rs567591532 2670 dbSNP
rs1310775548 2674 dbSNP
rs35136291 2675 dbSNP
rs555353520 2675 dbSNP
rs377246729 2687 dbSNP
rs61747487 2688 dbSNP
rs530566915 2693 dbSNP
rs1465634823 2694 dbSNP
rs34640797 2694 dbSNP
rs996830516 2696 dbSNP
rs1346658188 2707 dbSNP
rs1231632936 2710 dbSNP
rs1201706253 2719 dbSNP
rs1434225526 2720 dbSNP
rs866269882 2721 dbSNP
rs372900144 2723 dbSNP
rs1247865435 2731 dbSNP
rs1481861807 2732 dbSNP
rs1196855286 2735 dbSNP
rs563145377 2736 dbSNP
rs1456838683 2737 dbSNP
rs544962980 2737 dbSNP
rs1253707057 2738 dbSNP
rs943827252 2739 dbSNP
rs1172073398 2743 dbSNP
rs559840863 2744 dbSNP
rs532881463 2757 dbSNP
rs919699271 2759 dbSNP
rs1199491975 2760 dbSNP
rs1325916959 2764 dbSNP
rs1369630913 2772 dbSNP
rs1342293690 2780 dbSNP
rs1257224970 2789 dbSNP
rs1233934225 2794 dbSNP
rs1322540877 2795 dbSNP
rs1309609952 2796 dbSNP
rs1364369348 2807 dbSNP
rs1251134386 2812 dbSNP
rs559010504 2814 dbSNP
rs947781606 2822 dbSNP
rs1273873334 2831 dbSNP
rs541257540 2832 dbSNP
rs1468147821 2835 dbSNP
rs916145931 2838 dbSNP
rs949338199 2848 dbSNP
rs573893626 2849 dbSNP
rs1365571974 2853 dbSNP
rs952019408 2860 dbSNP
rs1429366501 2863 dbSNP
rs150030711 2868 dbSNP
rs1192152718 2870 dbSNP
rs75694354 2878 dbSNP
rs766929800 2884 dbSNP
rs1462897849 2886 dbSNP
rs1165649020 2889 dbSNP
rs960454505 2892 dbSNP
rs959435039 2894 dbSNP
rs867653866 2896 dbSNP
rs1459458105 2901 dbSNP
rs369035798 2903 dbSNP
rs1321493291 2912 dbSNP
rs1362168641 2917 dbSNP
rs1031819088 2921 dbSNP
rs1295228510 2924 dbSNP
rs189872678 2926 dbSNP
rs1274398202 2928 dbSNP
rs1334229231 2936 dbSNP
rs1400208529 2937 dbSNP
rs1219406392 2941 dbSNP
rs1003115471 2942 dbSNP
rs1467051738 2950 dbSNP
rs907036713 2967 dbSNP
rs1260750185 2969 dbSNP
rs1167184431 2983 dbSNP
rs1188538885 2989 dbSNP
rs1417014202 2992 dbSNP
rs1422018472 2996 dbSNP
rs997249388 2999 dbSNP
rs1345280011 3005 dbSNP
rs1452586526 3006 dbSNP
rs1286823403 3008 dbSNP
rs1020585043 3012 dbSNP
rs1417067196 3015 dbSNP
rs1294317694 3028 dbSNP
rs1355343552 3031 dbSNP
rs185168341 3037 dbSNP
rs1309164305 3039 dbSNP
rs1440310701 3042 dbSNP
rs893085041 3064 dbSNP
rs1054111693 3070 dbSNP
rs751145755 3072 dbSNP
rs1284203777 3073 dbSNP
rs557887296 3075 dbSNP
rs371685091 3078 dbSNP
rs139666539 3079 dbSNP
rs566211924 3080 dbSNP
rs900248401 3083 dbSNP
rs1040128215 3086 dbSNP
rs78884740 3099 dbSNP
rs569743394 3102 dbSNP
rs1408063047 3112 dbSNP
rs773569453 3116 dbSNP
rs1047944014 3117 dbSNP
rs1156439586 3120 dbSNP
rs1396462663 3140 dbSNP
rs1272397061 3144 dbSNP
rs534858117 3145 dbSNP
rs529227070 3146 dbSNP
rs1300491527 3156 dbSNP
rs567457122 3157 dbSNP
rs1223243976 3164 dbSNP
rs369033589 3167 dbSNP
rs78390958 3172 dbSNP
rs1350241494 3175 dbSNP
rs990772498 3180 dbSNP
rs959438755 3181 dbSNP
rs770226792 3183 dbSNP
rs1044877961 3186 dbSNP
rs947671906 3187 dbSNP
rs917599341 3188 dbSNP
rs1233439155 3189 dbSNP
rs1480283168 3190 dbSNP
rs1176195817 3195 dbSNP
rs549119016 3196 dbSNP
rs1454402663 3214 dbSNP
rs938928320 3215 dbSNP
rs1424900994 3217 dbSNP
rs762212056 3222 dbSNP
rs1413166182 3223 dbSNP
rs1173016461 3226 dbSNP
rs1336334256 3231 dbSNP
rs1446701918 3235 dbSNP
rs1396678774 3238 dbSNP
rs1329326826 3243 dbSNP
rs924894187 3243 dbSNP
rs1064960 3248 dbSNP
rs968895997 3252 dbSNP
rs371897561 3257 dbSNP
rs569898556 3259 dbSNP
rs370015860 3262 dbSNP
rs1196688739 3263 dbSNP
rs182745350 3264 dbSNP
rs1274492732 3268 dbSNP
rs1471640236 3271 dbSNP
rs747135999 3273 dbSNP
rs1008671347 3275 dbSNP
rs951265043 3279 dbSNP
rs1188584326 3282 dbSNP
rs995803913 3288 dbSNP
rs35554077 3298 dbSNP
rs1482461014 3299 dbSNP
rs546428643 3301 dbSNP
rs1462076418 3314 dbSNP
rs900174275 3318 dbSNP
rs1323000497 3319 dbSNP
rs1207258198 3323 dbSNP
rs1329525917 3325 dbSNP
rs1483338402 3330 dbSNP
rs571376248 3338 dbSNP
rs1270499521 3353 dbSNP
rs532745204 3354 dbSNP
rs546702843 3362 dbSNP
rs995337884 3365 dbSNP
rs534679925 3372 dbSNP
rs77527324 3375 dbSNP
rs12545040 3396 dbSNP
rs1287137541 3397 dbSNP
rs1448313468 3398 dbSNP
rs1216130656 3399 dbSNP
rs1243047419 3403 dbSNP
rs114290451 3404 dbSNP
rs896247614 3413 dbSNP
rs1192098145 3415 dbSNP
rs1306233840 3419 dbSNP
rs1047871615 3420 dbSNP
rs191099813 3423 dbSNP
rs935024405 3433 dbSNP
rs187121986 3434 dbSNP
rs1402656585 3438 dbSNP
rs1319309126 3447 dbSNP
rs576677774 3448 dbSNP
rs564783719 3449 dbSNP
rs947521142 3453 dbSNP
rs1314522945 3454 dbSNP
rs1355930161 3467 dbSNP
rs1163531160 3471 dbSNP
rs914754118 3471 dbSNP
rs1352300168 3478 dbSNP
rs1223962831 3484 dbSNP
rs1284926799 3486 dbSNP
rs546245515 3487 dbSNP
rs1214855513 3491 dbSNP
rs1260060065 3500 dbSNP
rs1486252491 3501 dbSNP
rs572468180 3502 dbSNP
rs927998357 3507 dbSNP
rs1183696762 3513 dbSNP
rs1471224849 3526 dbSNP
rs1159347498 3552 dbSNP
rs746000852 3556 dbSNP
rs982579452 3557 dbSNP
rs1219227706 3561 dbSNP
rs1453131842 3562 dbSNP
rs1332158423 3564 dbSNP
rs1336991665 3572 dbSNP
rs966808632 3573 dbSNP
rs986812452 3577 dbSNP
rs914025330 3582 dbSNP
rs1350967491 3585 dbSNP
rs1025528550 3600 dbSNP
rs752542779 3608 dbSNP
rs554346795 3613 dbSNP
rs1346239787 3622 dbSNP
rs1200357704 3630 dbSNP
rs1328754330 3631 dbSNP
rs995432652 3634 dbSNP
rs962510197 3635 dbSNP
rs1032896122 3641 dbSNP
rs1179259436 3643 dbSNP
rs1237652064 3648 dbSNP
rs1438045958 3650 dbSNP
rs1175828377 3661 dbSNP
rs996122398 3662 dbSNP
rs964709034 3664 dbSNP
rs896229014 3665 dbSNP
rs1170617030 3670 dbSNP
rs1018594508 3673 dbSNP
rs865817357 3680 dbSNP
rs1398493444 3681 dbSNP
rs1035221799 3684 dbSNP
rs1330023622 3685 dbSNP
rs999105363 3686 dbSNP
rs1374067406 3688 dbSNP
rs1442643317 3690 dbSNP
rs535962185 3700 dbSNP
rs1009008418 3702 dbSNP
rs902193427 3707 dbSNP
rs1333230017 3714 dbSNP
rs574828020 3718 dbSNP
rs1254661956 3729 dbSNP
rs886182256 3743 dbSNP
rs781237035 3747 dbSNP
rs555290152 3748 dbSNP
rs1268255654 3752 dbSNP
rs1457337280 3755 dbSNP
rs751095672 3761 dbSNP
rs1189449465 3764 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000358689.4 | 3UTR | CCUCUUUUCACCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000358689.4 | 3UTR | CCUCUUUUCACCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000358689.4 | 3UTR | CCUCUUUUCACCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.974 0.01 0.800 0.1 4 Click to see details
LUSC 0.976 0.07 0.500 0.33 3 Click to see details
STAD 0.943 0.11 1.000 0.5 3 Click to see details
BLCA 0.843 0.18 0.500 0.33 3 Click to see details
UCEC -0.626 0.28 -0.500 0.33 3 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
THCA -0.26 0.37 -0.800 0.1 4 Click to see details
153 hsa-miR-548f-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075032 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 2 2
MIRT076422 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT077732 ZNF652 zinc finger protein 652 2 2
MIRT097425 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT099605 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT105530 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT109834 MID1IP1 MID1 interacting protein 1 2 8
MIRT132952 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT134169 KLHL42 kelch like family member 42 2 4
MIRT138721 MPP5 membrane palmitoylated protein 5 2 2
MIRT187755 ESYT1 extended synaptotagmin 1 2 2
MIRT208054 LRRC58 leucine rich repeat containing 58 2 2
MIRT222029 PURB purine rich element binding protein B 2 2
MIRT243457 LMLN leishmanolysin like peptidase 2 2
MIRT266062 FJX1 four jointed box 1 2 6
MIRT279835 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT285122 TERF2IP TERF2 interacting protein 2 6
MIRT323906 TMEM245 transmembrane protein 245 2 2
MIRT325430 CKS2 CDC28 protein kinase regulatory subunit 2 2 2
MIRT338909 HMGN2 high mobility group nucleosomal binding domain 2 2 6
MIRT350498 MRGBP MRG domain binding protein 2 6
MIRT405877 CALM1 calmodulin 1 2 2
MIRT442081 NDRG1 N-myc downstream regulated 1 2 2
MIRT442371 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442397 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT444255 INTS8 integrator complex subunit 8 2 2
MIRT444875 ISPD isoprenoid synthase domain containing 2 2
MIRT445407 PTCHD1 patched domain containing 1 2 4
MIRT445493 HMGN4 high mobility group nucleosomal binding domain 4 2 2
MIRT446136 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 2 2
MIRT446261 GRAMD1C GRAM domain containing 1C 2 2
MIRT446353 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446403 SNX1 sorting nexin 1 2 2
MIRT446826 STK17A serine/threonine kinase 17a 2 2
MIRT447222 ABI2 abl interactor 2 2 2
MIRT447705 ERP44 endoplasmic reticulum protein 44 2 2
MIRT448248 ZNF774 zinc finger protein 774 2 2
MIRT448819 FKBP1A FK506 binding protein 1A 2 4
MIRT449060 ZNF558 zinc finger protein 558 2 2
MIRT449668 ZNF451 zinc finger protein 451 2 2
MIRT449974 ZNF555 zinc finger protein 555 2 2
MIRT450476 TRMT5 tRNA methyltransferase 5 2 4
MIRT450483 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT467980 SKIL SKI like proto-oncogene 2 4
MIRT470733 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT475012 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT490478 FEM1C fem-1 homolog C 2 2
MIRT497368 DIRAS2 DIRAS family GTPase 2 2 2
MIRT497561 PRLR prolactin receptor 2 2
MIRT497943 ABCB7 ATP binding cassette subfamily B member 7 2 2
MIRT498014 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT498206 ACVR2B activin A receptor type 2B 2 2
MIRT502637 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT505633 SLC16A1 solute carrier family 16 member 1 2 6
MIRT512261 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT518247 SCIN scinderin 2 4
MIRT520483 TRIM13 tripartite motif containing 13 2 4
MIRT521196 SBNO1 strawberry notch homolog 1 2 6
MIRT522764 LARP1 La ribonucleoprotein domain family member 1 2 4
MIRT525021 ABHD13 abhydrolase domain containing 13 2 4
MIRT525100 FRK fyn related Src family tyrosine kinase 2 2
MIRT525268 CD226 CD226 molecule 2 4
MIRT528662 FUNDC2 FUN14 domain containing 2 2 2
MIRT529353 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 2
MIRT529651 ZNF81 zinc finger protein 81 2 2
MIRT529815 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT530316 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT532775 LDHD lactate dehydrogenase D 2 2
MIRT533888 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT535657 NLN neurolysin 2 4
MIRT536351 LEFTY1 left-right determination factor 1 2 2
MIRT538089 DGKE diacylglycerol kinase epsilon 2 2
MIRT538118 DDX6 DEAD-box helicase 6 2 2
MIRT538950 BMP2K BMP2 inducible kinase 2 2
MIRT539086 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 4
MIRT539374 ADSS adenylosuccinate synthase 2 6
MIRT539860 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 2 4
MIRT539976 SPRY1 sprouty RTK signaling antagonist 1 2 2
MIRT541264 GPC4 glypican 4 2 4
MIRT543374 CYB5B cytochrome b5 type B 2 2
MIRT543472 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT543685 HHLA1 HERV-H LTR-associating 1 2 2
MIRT543877 SLC16A9 solute carrier family 16 member 9 2 2
MIRT544021 KLRC3 killer cell lectin like receptor C3 2 2
MIRT544119 TTLL11 tubulin tyrosine ligase like 11 2 4
MIRT545311 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT545769 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT545991 XKR4 XK related 4 2 2
MIRT546078 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT546717 RNPS1 RNA binding protein with serine rich domain 1 2 4
MIRT548964 CCNT2 cyclin T2 2 2
MIRT552133 MED10 mediator complex subunit 10 2 2
MIRT553941 STARD3NL STARD3 N-terminal like 2 2
MIRT554148 SLX4 SLX4 structure-specific endonuclease subunit 2 2
MIRT555009 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT555495 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT555651 PHF12 PHD finger protein 12 2 2
MIRT557631 GJD3 gap junction protein delta 3 2 2
MIRT557989 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT558838 CDCA4 cell division cycle associated 4 2 4
MIRT563344 RPLP0 ribosomal protein lateral stalk subunit P0 2 2
MIRT563902 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564263 DEPDC1B DEP domain containing 1B 2 2
MIRT565516 SOX4 SRY-box 4 2 2
MIRT565847 SCML2 Scm polycomb group protein like 2 2 2
MIRT567174 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT573142 ABT1 activator of basal transcription 1 2 2
MIRT573248 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT573740 KHSRP KH-type splicing regulatory protein 2 2
MIRT573983 DDX21 DExD-box helicase 21 2 2
MIRT574478 RPS16 ribosomal protein S16 2 2
MIRT608343 ZRANB1 zinc finger RANBP2-type containing 1 2 2
MIRT609782 NHSL1 NHS like 1 2 2
MIRT612536 RSF1 remodeling and spacing factor 1 2 2
MIRT613193 CLOCK clock circadian regulator 2 2
MIRT617539 GRK4 G protein-coupled receptor kinase 4 2 2
MIRT617779 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT620252 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT621740 TNPO2 transportin 2 2 2
MIRT628105 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT629471 CRLS1 cardiolipin synthase 1 2 6
MIRT638139 TTC26 tetratricopeptide repeat domain 26 2 2
MIRT641039 PITPNB phosphatidylinositol transfer protein beta 2 2
MIRT642453 CLUAP1 clusterin associated protein 1 2 2
MIRT643159 NCK1 NCK adaptor protein 1 2 2
MIRT643260 ZNF566 zinc finger protein 566 2 2
MIRT649827 LIPG lipase G, endothelial type 2 2
MIRT651199 ZNF280B zinc finger protein 280B 2 2
MIRT654633 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 2
MIRT656633 LRRC15 leucine rich repeat containing 15 2 2
MIRT660588 APP amyloid beta precursor protein 2 2
MIRT660865 AFAP1 actin filament associated protein 1 2 2
MIRT664141 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT666130 SPATS2L spermatogenesis associated serine rich 2 like 2 2
MIRT666391 SHMT1 serine hydroxymethyltransferase 1 2 2
MIRT667143 NT5DC3 5'-nucleotidase domain containing 3 2 2
MIRT673834 SPPL2A signal peptide peptidase like 2A 2 2
MIRT675539 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT693450 PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma 2 2
MIRT694852 KRT80 keratin 80 2 2
MIRT696047 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT696951 CERK ceramide kinase 2 2
MIRT697839 UBL3 ubiquitin like 3 2 2
MIRT700270 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT702733 INSIG1 insulin induced gene 1 2 2
MIRT705310 AVL9 AVL9 cell migration associated 2 2
MIRT705325 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707735 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT711798 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT713736 SUCO SUN domain containing ossification factor 2 2
MIRT715766 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT719186 KCNS2 potassium voltage-gated channel modifier subfamily S member 2 2 2
MIRT719478 PECR peroxisomal trans-2-enoyl-CoA reductase 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-548f 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548f-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-548f-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (1uM)
hsa-miR-548f-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (200nM)
hsa-miR-548f-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (200nM)
hsa-miR-548f-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (500nM)
hsa-miR-548f-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (1uM)
hsa-miR-548f-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (500nM)
hsa-miR-548f-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-548f-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548f-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-548f-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-548f-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-548f-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-548f-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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