miRTarBase - #MIRT109807


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pre-miRNA Information
pre-miRNA hsa-mir-1185-1   
Genomic Coordinates chr14: 101042977 - 101043062
Synonyms MIRN1185-1, hsa-mir-1185-1, MIR1185-1
Description Homo sapiens miR-1185-1 stem-loop
Comment This sequence was proposed as a miRNA candidate by Berezikov et al by RAKE analysis .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1185-1-3p
Sequence 53| AUAUACAGGGGGAGACUCUUAU |74
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 14 + 101043033 29233923 MiREDiBase
A-to-I 7 14 + 101043035 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs749794228 1 dbSNP
rs369414498 4 dbSNP
rs771096180 5 dbSNP
rs774958411 7 dbSNP
rs1226171972 11 dbSNP
rs1449899083 14 dbSNP
rs761183893 16 dbSNP
rs1380874583 20 dbSNP
rs771625921 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZFX   
Synonyms ZNF926
Description zinc finger protein, X-linked
Transcript NM_001178095   
Other Transcripts NM_001178085 , NM_001178086 , NM_001178084 , NM_003410   
Expression
Putative miRNA Targets on ZFX
3'UTR of ZFX
(miRNA target sites are highlighted)		 
>ZFX|NM_001178095|3'UTR
   1 TTATTGGCCCTGATGGACATCCTTTGACTGTCTATCCTTGCATGATTTGTGGGAAGAAGTTTAAGTCGAGAGGTTTTTTG
  81 AAAAGGCACATGAAAAACCATCCCGAACACCTTGCCAAGAAGAAATACCGCTGTACTGACTGTGATTACACTACCAACAA
 161 GAAGATAAGTTTACACAACCACCTGGAGAGCCACAAGCTGACCAGCAAGGCAGAGAAGGCCATTGAATGCGATGAGTGTG
 241 GGAAGCATTTCTCTCATGCAGGGGCTTTGTTTACTCACAAAATGGTGCATAAGGAAAAAGGAGCCAACAAAATGCACAAG
 321 TGTAAATTCTGTGAATACGAGACAGCTGAACAAGGGTTATTGAATCGCCACCTCTTGGCAGTCCACAGCAAGAACTTTCC
 401 TCATATTTGTGTGGAGTGTGGTAAGGGTTTTCGTCACCCGTCAGAGCTCAAAAAGCACATGAGAATCCATACTGGGGAGA
 481 AGCCGTACCAATGCCAGTACTGCGAATATAGGTCTGCAGACTCTTCTAACTTGAAAACGCATGTCAAAACTAAGCATAGT
 561 AAAGAGATGCCATTCAAGTGTGACATTTGTCTTCTGACTTTCTCGGATACCAAAGAGGTGCAGCAACATGCTCTTATCCA
 641 CCAAGAAAGCAAAACACACCAGTGTTTGCATTGCGACCACAAGAGTTCGAACTCAAGTGATTTGAAACGACACATAATTT
 721 CAGTTCACACGAAAGACTACCCCCATAAGTGTGACATGTGTGATAAAGGCTTTCACAGGCCTTCAGAACTCAAGAAACAC
 801 GTGGCTGCCCACAAGGGCAAAAAAATGCACCAGTGTAGACATTGTGACTTTAAGATTGCAGATCCATTTGTTCTAAGTCG
 881 CCATATTCTCTCAGTTCACACAAAGGATCTTCCATTTAGGTGCAAGAGATGTAGAAAGGGATTTAGGCAACAGAGTGAGC
 961 TTAAAAAGCATATGAAGACACACAGTGGCAGGAAAGTGTATCAGTGTGAGTACTGTGAGTATAGCACTACAGATGCCTCA
1041 GGCTTTAAACGGCACGTTATTTCCATTCACACGAAAGACTATCCTCACCGGTGTGAGTACTGCAAGAAAGGCTTCCGAAG
1121 ACCTTCAGAAAAGAACCAGCACATAATGCGACATCATAAAGAAGTTGGCCTGCCCTAACAATACTTCTACAGAACGTTTG
1201 TAGAGATATTGGCCTTGAAGCAGAAAATTCATTTTAAAGCCAATCAGTCTCATTCACATACAATACTGTATATTGATTTA
1281 TGCTGTGTACAAATAGAATTATTACTTCTAGTTGACTTTTTTTTAAATATACATTTTGCTCAGTAGTGTGTTCTGAATTC
1361 TATTCAGTTTGTTTAATAAATAGGGAAAACTGGCAACATGCTAGTTACTTTTAATAAAGTAATCCCTGATTCTATACCGA
1441 AGTTTTATATCTTAGAATTTTATATTTATTTAAATATTTACCTTGCTTACCTTGATGGTACTCTTCTAAGACCATTAACT
1521 TAAGGTAACTTTATATTGGTAACTCTGAAAGTATTCATGTTGACTCATTTTTTTCCCCATACATTTCTCACAATAAAATT
1601 GTCAGAGACATCTACTAATATAAATGGGAGATTTTACAGTCAGGTCTAATTATCATAACATGGAAGTCATTTACTTGTCT
1681 TGCTTAATATTTTCAGACCACTTGACAGTGAAAGTTTCCATTTGAGCTGTTGCGTCCCTGGCTTTGCTGAGTAAAGAGCA
1761 GTGGCTGGGTTCGTGTTTACTTTTCAAATATACTTCTTTTGGCTTTCTTTGGATTATTTACATCTTTTGTCAGCGTAGCA
1841 AACTTTTAGAAAACCTTATTGAAAAACTGTGCTTGCTCATGTTGTATTTTGATTATTCTGTCTGTGCGGCTTCATCTTGG
1921 AATGGTTGTGTGCTACAAATGACACTTACTGAGGACTGCATTTTGGAATCTCCTAGAGGTAACTCATGGCTTATAGGATC
2001 TTTTGCAACTTTATGTATGTAAATGTACCCTGAATTATATATATACACATATATATCATGTACCTGTGTGTATTGCTTAT
2081 TTTACATATTTATACACACAACCCCAAGTAGTAGTTGTTTAAAATCTATAATGAAAAGTATTAAATTTACAATAACATGA
2161 AAGATCCAGGGATGCATGAGAGAGCATTTTGTAAGTCATGCTCTTCAGAGAGACTACTCAGGTGAAGAATTAGAAGGAAA
2241 ATAAGGACACTAGTATTTTTAAAGAGTAAAGATATTTTCTTTTAAATATCTTTGGTAATTGAAACATAGAGGTTAAGATG
2321 TTTCTAGGTAGAATGTTTTCATACAATTTCACCTCCATGTCTTTATGTTTTTCTGAAAAGCAAATGAGTATCCAGACATG
2401 ACTCCCACAGTTCTCTTTGAGAAGCCTGAGAGGGAACTCTGTCTTACCTAGTGAGGGGGATGGAAAAGAAGTGATGGCTC
2481 TGTGGACCAGAGAACGGGTGCTAATTATGACTTCACACTCGGCAAGTTCAGGCTGATCTGTTATTTCTCAGTTACAGTTA
2561 GCAAACTTTAAAAACTTAACACTCAAGTTGGCTTTGATTAAAAGGTAAAGATGTGTTTTAAGTGGATAAGGAAAGTCTGA
2641 GGCCTTATTTGGAACATCACTAAGTCTTCCACAGGTTTTTTGTTTGTTTGTTTTTTTTTGTTGTTTTTTTTTCTTAAGAC
2721 GGAGTCTTGCTCTGTTGCCCAGGCTGGACTGCAGTGGTGTGATCACTGCAACCTCTGCAGCTCACTGCAACCTCTGCTTC
2801 CTGGGTTCAAGCAATTATCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCGCCCACCACCACGCCCGGCTAATTTTT
2881 TGTATTTTTAATAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACCCTGACCTCGTGATCCACCTGCCTCGG
2961 CCTTCCATAGTGCTGGGTTTACAGGCGTGAGCCACCGTGCCCAGACACCACATAGGTCTGAATCAGTGTCATACATTCAT
3041 AAAACAAACTCGGTTAATTAGAACTTGGTTATGTTAAGACGAATCTGGGAGAACAGAAAACAGTTTTTGGGGTCCCTTCA
3121 GTTGGCTATTGGTCCGTATGCATCTAGCACATTGTAGGAGATTTAGAAATTGTCTTCCCACCCGATAGCTGCCTTGTCAC
3201 CTCATTATGGTGCTCCATCCCCTGTGTGCTTAGGTTTTTACCTTTCATCTTTCTCTTTGCCATTGATGTTTGTATTCAAG
3281 AGTTATATTTTTAGGGTTAGAAATCAAAATATTTGGTGTTTGGCAAACCTCTGAAGTGCTAGACTGATTTAGTCTAGTTT
3361 TAAACCAAGTGCTTTAGGCAGGTGTGAACTCCAGCCCAAATGCCAGTCAAAGTCAAGGCATGGGTTTTCCTAGCCTATCT
3441 TATAGGAAATTCCTGTACCTTCTTGGCCCCCATAATGTGTTTTTTTTTTTTTTTTTTTTTTAAACTAACTTACAATTTTG
3521 TGATCCGTGATTCATTGCCCTGCGATTCTTGAAAGCTCTGTCTGTTTTTTTGTGAGAACCTTTAAAATCTCCCTTAATTT
3601 TTATTTTCCCAGAAATAATGTAAAAACACTTAAATGAAAGTGGAAATGTATTAATTTTAAATCCTATAAAATTAATACAG
3681 AAAATATAAATGATTGGGTCATTTAACTATATTTTTTTAAATAAACTGAAAGATAAAGAACACAACACTTCACACATTTT
3761 ATATTTCTCTTACATACTCCGGAATCATACACAGTTCTTTTTAAAGCACAACATTAAAACCTTTAAAAGGTATTTAAGGG
3841 TTTGGTCAAGTGAATATGATAAAACATACTTGTCTGTATAAAGAGAAAATGAAATTGTAGTCACTGTTATGTACTGACAT
3921 TAGTTACAACCTAGTTTTAATTCTTAAAACAATTTTGATTAGCAAAGCTAAAAAAAAATGGATGTTTCAGTTAAATGTTT
4001 TAAAGAGGTACAGATTTTTACAAGGACATAATATAAGTTATTGTTCTGTAGAAATATCCTATTAAATATTGTATGTCCCT
4081 CCCTCTGTACACTTTGTAAAGAAAGTAAAATACATAAAAAGAAAATCATATAGGGATGTGTGACATTATTGTAATTGTGT
4161 ACTTGAGAATAACGTGCAAAAATAAAAATCAGAATATTTTCCTGTTATTGAATGTTTAGTCTATTTGATACCAGTACTAA
4241 GTTAATGCTTTTTCTCAAGGAAAAAAAATGTACAGTTTTTGTAAACCTAATAAACATCAAAAGCAGTGGATTATTTTCAT
4321 CCCCCCATTTCTTAATTTCTTTTTCACAGCAGTGGAATGCAAAGTGCTTGATTGCTTTGAATTTTGTGACTCGGATGCAA
4401 ATACTGGTAATATTTCAGTTCTGTGAATTTGCAAGTAATATTTCAGAGAAGTTAAGAGGTGATTGGTGAGTCCTTTGATG
4481 AGCATGTCCTTGGAATTCATTTTTTCTTTTATCTTCATAAAGGATTTGTTTTATTAGCATCTCCAATTCCCCTGAGATAA
4561 ATTACTCATGCATAAAGTGGTTTTTGAGAGCACTTAAAGTTCATTTCAGTATTAATTTACAGCATATTTAATCAGTGGGG
4641 ACTGTTACCACCTCCACAACAGAAATCATGCCCTCGAGTTACCCCACTGCGCCCAGTTTAGAGGACTAGTAGATGCTAAC
4721 ATACTAGGGAATGGTCATTGCCACAGTTAAAAATCGGCAGTTAAGTAAATGTCAGGAGTCAAAAGAGATAGAGTTGTGCC
4801 ATCTTTGATTTTATAGACAAGATTCTGCAGTTCTTCCAACTGTATGAACAAACGTTTGCCTAATAGTTGAAACAATAAAT
4881 TAAAATTTTAGGTAAATGACGAAGGGAATGTGGTGAATGTCACTGTCCAGAGCCATAAATCAGACAAAACCATACATAGC
4961 ATGCTGAAAAACTTTTGTAATGGAACACCCAACAAATGACACCTAACCTGTCTGTGATCCAACAAGTCCGATAACATGCT
5041 GCTGTATTTGTATTCTCTGGGAATCTCAGTATTAATAATTTCATTTCCCACAAATTCTAGCATTCATGTAAGGAAAAACA
5121 TGGCTAATCAATATCTTAAAGGGGCAATCTTTCAGAGCAGTGGTTTTCAAAGTATGGCCGGACAGCATTGGCAGCATCTT
5201 AATCTCCTGGGACTTTGTTAAAAATGCAAATTCTCAGCCCCACCCTAGTCCTACTGAATTGGGAAACTGGCGTGGGACCC
5281 AGCAGTCTTTGTTTTAACATGTTCTCCAAGTGATTCTGATGCCTGTTCAAACTTGGGAAACACTTTTAGAGCACTTGAGG
5361 AACCTAAAAGATGACTGGTTCAGCATTTTGTGTGGTAGATAAGAAAGAAATTATCACAAAAAATCAGAAATGAACAGTGA
5441 GAGAAAAATAGGACCCCAGACAGTTTATACCTTCCATTTGCTGTTTTAAAAGTGTGAGCCTGCCAAGTCAACAAGTATGC
5521 CTTTAGCGCACATGTAAATAGCCTGCACTTCCTAAATCTCGTGTGGCCTCCCATGGTTACATTCTTCAAAGGTAAACTGA
5601 GTTGAGAGGAAGATTCAGCATTTAAAAGAGAAGGGTTGAAAAAGATTGTGTGTGTGTGTGTGTGTGTTTAATTGGCCCAG
5681 GGTTACTTAAATAAATCATAACCATTTTGCCACATTCTGTAACTGTTTAGCTAAGGTCAAATTAAGTTTACCCTATGGAT
5761 TTTGTTTCATCTTTTGTTTCGTGTATATACTGTTTGCCTTTTTCATAAAAATCTTGGATTTGTTATATATTGTTCCTGTT
5841 ATTTTTGACATCTTTGCTATTGTAAATAAATTACTATTTTGTTTTAAGTTACCCTAGTGGAGTGTTGGCTATAGACAAGG
5921 TATATACTCGAAACGAGGAGACTTAAATCACACAGTTAATGAATTCCCAACTTGTTTGAAGCTGGAGGTGATTCGACTCC
6001 CTTCAGTGGTTCAACACTAATAATAGCACCAAGGAACATGTCACTGGTGCATATAGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaUUCUCAGAGGGGGACAUAUa 5'
            || |  || : :||||||| 
Target 5' aaAACATACT-TGTCTGTATAa 3'
 3861 - 3881 147.00 -7.90
2 
miRNA  3' uauucUCAGAG---GGG--------GACAUAUa 5'
               ||||||   | |        ||||||| 
Target 5' caatcAGTCTCATTCACATACAATACTGTATAt 3'
 1241 - 1273 143.00 -13.13
3 
miRNA  3' uauucUC-AGAGGG-GGACAUAUa 5'
               || |||:||  ||||||: 
Target 5' tctgcAGTTCTTCCAACTGTATGa 3'
 4824 - 4847 141.00 -14.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
731146 348 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139682828 1 dbSNP
rs755229158 18 dbSNP
rs781462585 21 dbSNP
rs748257715 33 dbSNP
rs756639616 68 dbSNP
rs142947188 69 dbSNP
rs2228659 75 dbSNP
rs750678446 96 dbSNP
rs770464534 105 dbSNP
rs1382962915 106 dbSNP
rs1333652595 114 dbSNP
rs771679814 117 dbSNP
rs775044184 125 dbSNP
rs267606422 129 dbSNP
rs887269226 130 dbSNP
rs776053792 131 dbSNP
rs1322401348 137 dbSNP
rs776565504 140 dbSNP
rs761543769 143 dbSNP
rs149869172 144 dbSNP
rs750213223 151 dbSNP
rs1484408368 153 dbSNP
rs759906548 156 dbSNP
rs925019736 166 dbSNP
rs767840780 170 dbSNP
rs752736534 177 dbSNP
rs141995872 183 dbSNP
rs202063826 184 dbSNP
rs778178895 189 dbSNP
rs1355214061 197 dbSNP
rs1454557990 206 dbSNP
rs1172206592 207 dbSNP
rs1340951412 219 dbSNP
rs1400249023 230 dbSNP
rs372941972 231 dbSNP
rs974391730 232 dbSNP
rs1356045776 233 dbSNP
rs747372153 236 dbSNP
rs1304660335 237 dbSNP
rs1318500916 243 dbSNP
rs779286591 253 dbSNP
rs1255064273 257 dbSNP
rs746224649 267 dbSNP
rs1212444359 272 dbSNP
rs1280384649 273 dbSNP
rs771767752 274 dbSNP
rs571082669 276 dbSNP
rs1405964354 281 dbSNP
rs921619691 302 dbSNP
rs746503325 308 dbSNP
rs1420051704 309 dbSNP
rs768172471 315 dbSNP
rs955071759 317 dbSNP
rs1393522258 320 dbSNP
rs776455237 321 dbSNP
rs933228699 327 dbSNP
rs1424822502 330 dbSNP
rs1193330435 334 dbSNP
rs766688861 339 dbSNP
rs769777242 342 dbSNP
rs144297435 348 dbSNP
rs1222944872 360 dbSNP
rs940522347 365 dbSNP
rs147810543 378 dbSNP
rs773201273 380 dbSNP
rs762361961 387 dbSNP
rs762780438 400 dbSNP
rs1200188128 413 dbSNP
rs767859505 426 dbSNP
rs899248950 429 dbSNP
rs1280498890 433 dbSNP
rs1340843621 440 dbSNP
rs752927326 441 dbSNP
rs1001603443 444 dbSNP
rs1253606404 460 dbSNP
rs760695305 464 dbSNP
rs764287419 467 dbSNP
rs753826435 472 dbSNP
rs757825264 474 dbSNP
rs779376824 477 dbSNP
rs750798495 478 dbSNP
rs779602850 480 dbSNP
rs1194490165 485 dbSNP
rs746622902 486 dbSNP
rs768162894 489 dbSNP
rs202145837 491 dbSNP
rs1356241795 497 dbSNP
rs747650106 498 dbSNP
rs141285716 501 dbSNP
rs143557208 504 dbSNP
rs762875158 505 dbSNP
rs1435661709 518 dbSNP
rs1330651442 523 dbSNP
rs1321625120 525 dbSNP
rs770714295 539 dbSNP
rs773999465 540 dbSNP
rs760993473 543 dbSNP
rs990031789 563 dbSNP
rs1297042343 582 dbSNP
rs1308639503 586 dbSNP
rs776827619 605 dbSNP
rs376089345 606 dbSNP
rs1470102339 608 dbSNP
rs1214644134 613 dbSNP
rs148052051 614 dbSNP
rs1269818607 615 dbSNP
rs750888389 622 dbSNP
rs758783556 624 dbSNP
rs1427682509 627 dbSNP
rs766815041 636 dbSNP
rs56171102 637 dbSNP
rs371967051 638 dbSNP
rs754719211 651 dbSNP
rs980866887 660 dbSNP
rs751460995 661 dbSNP
rs754820918 662 dbSNP
rs1415498950 669 dbSNP
rs780651874 672 dbSNP
rs747668510 675 dbSNP
rs755647975 676 dbSNP
rs1020966198 689 dbSNP
rs369124495 690 dbSNP
rs1457945344 694 dbSNP
rs749290255 696 dbSNP
rs770746632 697 dbSNP
rs774264411 705 dbSNP
rs867194697 710 dbSNP
rs927917341 715 dbSNP
rs1196366905 731 dbSNP
rs55704019 741 dbSNP
rs768934718 747 dbSNP
rs776765155 801 dbSNP
rs761910904 808 dbSNP
rs765251984 814 dbSNP
rs1279045205 816 dbSNP
rs1315407761 825 dbSNP
rs1218605237 856 dbSNP
rs1218196602 876 dbSNP
rs372943857 880 dbSNP
rs1482971610 909 dbSNP
rs939337977 918 dbSNP
rs376980290 929 dbSNP
rs967535007 930 dbSNP
rs1255341708 935 dbSNP
rs1476122341 936 dbSNP
rs766783661 951 dbSNP
rs751969128 960 dbSNP
rs371397342 966 dbSNP
rs140896363 986 dbSNP
rs1345346154 990 dbSNP
rs752352008 994 dbSNP
rs1310501617 996 dbSNP
rs1357961278 998 dbSNP
rs755809582 999 dbSNP
rs1033204930 1003 dbSNP
rs777469791 1005 dbSNP
rs1371628051 1018 dbSNP
rs748798870 1038 dbSNP
rs957753890 1041 dbSNP
rs1361301322 1044 dbSNP
rs757272601 1056 dbSNP
rs1311772895 1057 dbSNP
rs150173584 1074 dbSNP
rs1282523060 1080 dbSNP
rs1486637918 1090 dbSNP
rs1188549776 1091 dbSNP
rs771723278 1092 dbSNP
rs199864282 1098 dbSNP
rs941513028 1107 dbSNP
rs751424706 1113 dbSNP
rs748417793 1118 dbSNP
rs769972761 1137 dbSNP
rs932987939 1144 dbSNP
rs1433683179 1145 dbSNP
rs1237021854 1152 dbSNP
rs1171257154 1162 dbSNP
rs138803126 1176 dbSNP
rs1038557801 1179 dbSNP
rs758750697 1179 dbSNP
rs201957788 1182 dbSNP
rs996579981 1185 dbSNP
rs1050808911 1187 dbSNP
rs372957514 1190 dbSNP
rs1280458962 1192 dbSNP
rs774683085 1194 dbSNP
rs374127334 1195 dbSNP
rs768047147 1196 dbSNP
rs760474980 1197 dbSNP
rs1204440360 1205 dbSNP
rs763820951 1210 dbSNP
rs112501460 1220 dbSNP
rs753408336 1221 dbSNP
rs1206412911 1225 dbSNP
rs187192709 1230 dbSNP
rs376311819 1240 dbSNP
rs1357783913 1241 dbSNP
rs1300649813 1243 dbSNP
rs539403251 1244 dbSNP
rs1022771175 1254 dbSNP
rs895783780 1259 dbSNP
rs1396295927 1262 dbSNP
rs1425196408 1264 dbSNP
rs757000001 1273 dbSNP
rs778711257 1286 dbSNP
rs1041752234 1289 dbSNP
rs745458853 1291 dbSNP
rs1294255073 1294 dbSNP
rs1265030410 1309 dbSNP
rs1217298063 1311 dbSNP
rs1487898575 1315 dbSNP
rs1313787379 1317 dbSNP
rs769164751 1317 dbSNP
rs781656650 1317 dbSNP
rs982810366 1317 dbSNP
rs1000471669 1325 dbSNP
rs1354011178 1328 dbSNP
rs748731969 1330 dbSNP
rs908768754 1331 dbSNP
rs1401182674 1334 dbSNP
rs1217319585 1341 dbSNP
rs1360381243 1342 dbSNP
rs192618174 1344 dbSNP
rs1459051459 1346 dbSNP
rs1349941262 1354 dbSNP
rs1163694499 1363 dbSNP
rs777109485 1377 dbSNP
rs921407260 1402 dbSNP
rs1209547330 1404 dbSNP
rs1477462930 1431 dbSNP
rs10126378 1439 dbSNP
rs990879702 1443 dbSNP
rs1028749382 1448 dbSNP
rs1050797573 1451 dbSNP
rs954524872 1452 dbSNP
rs1260408474 1504 dbSNP
rs1219553711 1508 dbSNP
rs1340290547 1513 dbSNP
rs1188974155 1518 dbSNP
rs998462160 1521 dbSNP
rs1292395587 1524 dbSNP
rs1367740115 1524 dbSNP
rs1459567202 1527 dbSNP
rs1401954443 1535 dbSNP
rs1427001937 1538 dbSNP
rs762940015 1538 dbSNP
rs1262201685 1543 dbSNP
rs987535023 1550 dbSNP
rs907563538 1553 dbSNP
rs1162043841 1554 dbSNP
rs185339050 1559 dbSNP
rs1476753801 1560 dbSNP
rs1052739461 1567 dbSNP
rs188305835 1573 dbSNP
rs1190640578 1575 dbSNP
rs774573740 1575 dbSNP
rs1420152121 1584 dbSNP
rs1432038685 1588 dbSNP
rs1467311481 1590 dbSNP
rs962252260 1592 dbSNP
rs372119745 1599 dbSNP
rs1236107642 1601 dbSNP
rs767336920 1608 dbSNP
rs1297259324 1618 dbSNP
rs1300006626 1632 dbSNP
rs1023308902 1638 dbSNP
rs1378467856 1642 dbSNP
rs969916082 1646 dbSNP
rs12389526 1647 dbSNP
rs756950599 1649 dbSNP
rs752464112 1656 dbSNP
rs1174074377 1663 dbSNP
rs1466512133 1664 dbSNP
rs1055768656 1669 dbSNP
rs1171673822 1670 dbSNP
rs917321265 1676 dbSNP
rs950189286 1697 dbSNP
rs1042090408 1698 dbSNP
rs760720628 1702 dbSNP
rs982882459 1702 dbSNP
rs1363296777 1708 dbSNP
rs1179538806 1709 dbSNP
rs1015566027 1721 dbSNP
rs763932001 1725 dbSNP
rs1363402906 1735 dbSNP
rs1248887949 1741 dbSNP
rs778523644 1742 dbSNP
rs1483867648 1750 dbSNP
rs1255994013 1753 dbSNP
rs1232727511 1757 dbSNP
rs1355291915 1763 dbSNP
rs1299246401 1765 dbSNP
rs753740831 1773 dbSNP
rs1335955513 1774 dbSNP
rs1396453948 1776 dbSNP
rs1314088915 1787 dbSNP
rs1311041516 1793 dbSNP
rs1401213863 1793 dbSNP
rs1421406433 1804 dbSNP
rs1211854301 1821 dbSNP
rs1159275296 1825 dbSNP
rs963040733 1830 dbSNP
rs1469828316 1831 dbSNP
rs1362209728 1836 dbSNP
rs375484177 1842 dbSNP
rs778517161 1851 dbSNP
rs1255880774 1854 dbSNP
rs1209410390 1855 dbSNP
rs747440308 1860 dbSNP
rs1286140841 1867 dbSNP
rs974311976 1868 dbSNP
rs1000419437 1870 dbSNP
rs1242534604 1879 dbSNP
rs1347911068 1889 dbSNP
rs1285650739 1897 dbSNP
rs1245034934 1898 dbSNP
rs1339695896 1899 dbSNP
rs16982932 1905 dbSNP
rs1401790322 1908 dbSNP
rs1361025873 1909 dbSNP
rs1189467376 1911 dbSNP
rs899961382 1915 dbSNP
rs773684586 1921 dbSNP
rs921550184 1930 dbSNP
rs997014446 1931 dbSNP
rs932812447 1939 dbSNP
rs768938413 1942 dbSNP
rs986956718 1942 dbSNP
rs1458577621 1944 dbSNP
rs912292522 1944 dbSNP
rs758093446 1950 dbSNP
rs781724403 1952 dbSNP
rs954600189 1957 dbSNP
rs1193080186 1970 dbSNP
rs1444825969 1983 dbSNP
rs934384782 1993 dbSNP
rs1210091544 1994 dbSNP
rs1008671979 1995 dbSNP
rs1271050894 1998 dbSNP
rs1014980755 2000 dbSNP
rs1340891590 2004 dbSNP
rs1418203579 2020 dbSNP
rs892764514 2028 dbSNP
rs1428527049 2036 dbSNP
rs1324803710 2043 dbSNP
rs748449176 2047 dbSNP
rs961702532 2052 dbSNP
rs1044313517 2053 dbSNP
rs1289027112 2054 dbSNP
rs1346203221 2064 dbSNP
rs1436387704 2065 dbSNP
rs770401701 2065 dbSNP
rs1167882940 2071 dbSNP
rs1424755710 2071 dbSNP
rs1474688648 2076 dbSNP
rs1247970126 2084 dbSNP
rs973261084 2089 dbSNP
rs920516407 2090 dbSNP
rs1292355533 2094 dbSNP
rs1369750743 2102 dbSNP
rs778150242 2102 dbSNP
rs958657057 2104 dbSNP
rs1235125684 2114 dbSNP
rs991276695 2117 dbSNP
rs193278826 2118 dbSNP
rs1271988206 2119 dbSNP
rs1212769093 2122 dbSNP
rs771025745 2129 dbSNP
rs1276706959 2130 dbSNP
rs1437205097 2142 dbSNP
rs1242632610 2145 dbSNP
rs977545115 2157 dbSNP
rs1284685925 2159 dbSNP
rs1324191645 2159 dbSNP
rs1320952148 2167 dbSNP
rs748551235 2175 dbSNP
rs1328541410 2176 dbSNP
rs1219209760 2180 dbSNP
rs924571317 2181 dbSNP
rs1248387451 2184 dbSNP
rs1427787257 2186 dbSNP
rs1173665956 2189 dbSNP
rs774380120 2190 dbSNP
rs1491085250 2191 dbSNP
rs1392699197 2193 dbSNP
rs759799252 2196 dbSNP
rs886285983 2200 dbSNP
rs1232115687 2203 dbSNP
rs772266590 2205 dbSNP
rs1016095613 2207 dbSNP
rs763115671 2207 dbSNP
rs1441126144 2222 dbSNP
rs1347288693 2223 dbSNP
rs1158855702 2246 dbSNP
rs150948701 2249 dbSNP
rs962738372 2252 dbSNP
rs1242611870 2260 dbSNP
rs974513593 2263 dbSNP
rs900077349 2267 dbSNP
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rs943019086 6015 dbSNP
rs182872451 6019 dbSNP
rs771168291 6030 dbSNP
rs901529356 6037 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uauucUCAGAG---GGG--------GACAUAUa 5'
               ||||||   | |        ||||||| 
Target 5' caaucAGUCUCAUUCACAUACAAUACUGUAUA- 3'
 		2 - 33
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000539115.1 | 3UTR | CCAAUCAGUCUCAUUCACAUACAAUACUGUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
114 hsa-miR-1185-1-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066415 TBK1 TANK binding kinase 1 2 4
MIRT073567 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT074516 USP1 ubiquitin specific peptidase 1 2 4
MIRT080576 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT086539 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT086547 MOB4 MOB family member 4, phocein 2 2
MIRT088684 EML4 echinoderm microtubule associated protein like 4 2 4
MIRT090811 MBNL1 muscleblind like splicing regulator 1 2 4
MIRT095500 PURA purine rich element binding protein A 2 2
MIRT109530 KLHL15 kelch like family member 15 2 6
MIRT109807 ZFX zinc finger protein, X-linked 2 2
MIRT117888 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT120273 GSK3B glycogen synthase kinase 3 beta 2 4
MIRT149892 LDLR low density lipoprotein receptor 2 2
MIRT178475 LCOR ligand dependent nuclear receptor corepressor 2 4
MIRT193445 RORA RAR related orphan receptor A 2 2
MIRT198527 DSG2 desmoglein 2 2 2
MIRT226427 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT227669 SET SET nuclear proto-oncogene 2 2
MIRT320405 HOXA9 homeobox A9 2 2
MIRT407774 MRPL35 mitochondrial ribosomal protein L35 2 2
MIRT439228 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT439312 VAT1L vesicle amine transport 1 like 1 1
MIRT439421 TMOD1 tropomodulin 1 1 1
MIRT439446 TMEM104 transmembrane protein 104 1 1
MIRT439524 STIM2 stromal interaction molecule 2 1 1
MIRT439612 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 1 1
MIRT439997 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 1 1
MIRT440017 PCSK1 proprotein convertase subtilisin/kexin type 1 1 1
MIRT440131 NCOA4 nuclear receptor coactivator 4 1 1
MIRT440311 LRRC1 leucine rich repeat containing 1 1 1
MIRT440475 IAPP islet amyloid polypeptide 1 1
MIRT440511 HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 1 1
MIRT440617 FOXA2 forkhead box A2 1 1
MIRT440666 FBXL16 F-box and leucine rich repeat protein 16 1 1
MIRT440705 ERO1LB endoplasmic reticulum oxidoreductase 1 beta 1 1
MIRT441007 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 1 1
MIRT441018 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT441062 C1orf43 chromosome 1 open reading frame 43 1 1
MIRT441209 ARCN1 archain 1 1 1
MIRT449461 HAT1 histone acetyltransferase 1 2 2
MIRT467104 SRI sorcin 2 2
MIRT468060 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 10
MIRT468476 SESN3 sestrin 3 2 4
MIRT473533 MAX MYC associated factor X 2 2
MIRT473852 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT474711 KIF13A kinesin family member 13A 2 6
MIRT481665 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 2 2
MIRT485120 SF3B3 splicing factor 3b subunit 3 2 2
MIRT493055 MTFR1 mitochondrial fission regulator 1 2 2
MIRT504258 C1orf147 chromosome 1 open reading frame 147 2 4
MIRT504361 ARID1B AT-rich interaction domain 1B 2 4
MIRT505748 SENP1 SUMO1/sentrin specific peptidase 1 2 8
MIRT506298 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 6
MIRT508442 ZNF608 zinc finger protein 608 2 4
MIRT512782 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT520447 TSPAN2 tetraspanin 2 2 4
MIRT522133 NRBF2 nuclear receptor binding factor 2 2 6
MIRT522395 MYADM myeloid associated differentiation marker 2 4
MIRT523397 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 4
MIRT523938 E2F8 E2F transcription factor 8 2 4
MIRT524349 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524711 BRMS1L breast cancer metastasis-suppressor 1 like 2 4
MIRT525134 ZNF256 zinc finger protein 256 2 2
MIRT525710 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 2 2
MIRT531264 PPIL3 peptidylprolyl isomerase like 3 2 2
MIRT538844 BTG1 BTG anti-proliferation factor 1 2 2
MIRT541366 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT542093 KCNK10 potassium two pore domain channel subfamily K member 10 2 6
MIRT543770 RBM12B RNA binding motif protein 12B 2 4
MIRT543940 NCOA7 nuclear receptor coactivator 7 2 2
MIRT545150 GABRG1 gamma-aminobutyric acid type A receptor gamma1 subunit 2 2
MIRT545842 ZNF264 zinc finger protein 264 2 4
MIRT548057 GOLGA7 golgin A7 2 2
MIRT549242 ATXN1L ataxin 1 like 2 4
MIRT551829 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT552484 ZNF136 zinc finger protein 136 2 2
MIRT553663 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT554988 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT555760 PCTP phosphatidylcholine transfer protein 2 2
MIRT556923 IRF2BP2 interferon regulatory factor 2 binding protein 2 2 4
MIRT564991 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT566458 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT566538 PANK3 pantothenate kinase 3 2 2
MIRT567732 DLX2 distal-less homeobox 2 2 2
MIRT570081 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 2
MIRT571735 RNF11 ring finger protein 11 2 2
MIRT573529 MDM2 MDM2 proto-oncogene 2 2
MIRT574459 RPS16 ribosomal protein S16 2 2
MIRT574992 Phka1 phosphorylase kinase alpha 1 2 3
MIRT576349 Pxdn peroxidasin 2 2
MIRT610196 CD99 CD99 molecule (Xg blood group) 2 4
MIRT612920 GPRIN3 GPRIN family member 3 2 2
MIRT615021 DUSP6 dual specificity phosphatase 6 2 2
MIRT623573 IRS1 insulin receptor substrate 1 2 2
MIRT624437 CASD1 CAS1 domain containing 1 2 2
MIRT628714 ZNF585A zinc finger protein 585A 2 2
MIRT639565 PCK1 phosphoenolpyruvate carboxykinase 1 2 4
MIRT641485 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT641657 PAPOLG poly(A) polymerase gamma 2 2
MIRT642210 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT653010 STX7 syntaxin 7 2 2
MIRT656130 MSH6 mutS homolog 6 2 2
MIRT656893 KIAA2018 upstream transcription factor family member 3 2 2
MIRT660130 BRPF3 bromodomain and PHD finger containing 3 2 2
MIRT660855 AFAP1 actin filament associated protein 1 2 2
MIRT676843 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 3
MIRT681473 DIP2A disco interacting protein 2 homolog A 2 2
MIRT682253 RS1 retinoschisin 1 2 2
MIRT694296 COPB2 coatomer protein complex subunit beta 2 2 2
MIRT694401 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT705277 BACH1 BTB domain and CNC homolog 1 2 2
MIRT720833 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT735713 SIRT1 sirtuin 1 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1185-1 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-1185-1 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1185-1-3p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-1185-1-3p Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-1185-1-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-1185-1-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1185-1-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1185-1-3p Palbociclib 5330286 NSC758247 approved resistant cell line (T47D)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1185-1-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1185-1-3p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-1185-1-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-1185-1-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-1185-1-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1185-1-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1185-1-3p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-1185-1-3p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-1185-1-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-1185-1-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-1185-1-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1185-1-3p Cisplatin 5460033 NSC119875 approved resistant cell line (TOV-112D)

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